Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47141.t1 | XP_003618833.1 | 95.5 | 242 | 11 | 0 | 1 | 242 | 1 | 242 | 1.90E-121 | 445.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47141.t1 | Q5C9I9 | 55.8 | 231 | 102 | 0 | 12 | 242 | 6 | 236 | 5.1e-62 | 239.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47141.t1 | G7KNM8 | 95.5 | 242 | 11 | 0 | 1 | 242 | 1 | 242 | 1.4e-121 | 445.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050584 | MS.gene47141 | 0.811943 | 5.44E-51 | -1.69E-46 |
| MS.gene051789 | MS.gene47141 | 0.808094 | 3.67E-50 | -1.69E-46 |
| MS.gene053074 | MS.gene47141 | 0.831311 | 1.79E-55 | -1.69E-46 |
| MS.gene054596 | MS.gene47141 | 0.814461 | 1.52E-51 | -1.69E-46 |
| MS.gene058168 | MS.gene47141 | 0.800458 | 1.43E-48 | -1.69E-46 |
| MS.gene059006 | MS.gene47141 | 0.843931 | 1.03E-58 | -1.69E-46 |
| MS.gene059124 | MS.gene47141 | 0.818412 | 1.99E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47141.t1 | MTR_6g023610 | 95.455 | 242 | 11 | 0 | 1 | 242 | 1 | 242 | 1.47e-170 | 471 |
| MS.gene47141.t1 | MTR_6g023910 | 79.268 | 246 | 51 | 0 | 1 | 246 | 1 | 246 | 2.51e-145 | 407 |
| MS.gene47141.t1 | MTR_6g023590 | 72.314 | 242 | 67 | 0 | 1 | 242 | 1 | 242 | 6.74e-128 | 363 |
| MS.gene47141.t1 | MTR_6g023990 | 71.605 | 243 | 68 | 1 | 1 | 242 | 1 | 243 | 8.44e-126 | 358 |
| MS.gene47141.t1 | MTR_6g023600 | 73.140 | 242 | 65 | 0 | 1 | 242 | 1 | 242 | 1.17e-123 | 352 |
| MS.gene47141.t1 | MTR_6g023950 | 71.951 | 246 | 69 | 0 | 1 | 246 | 1 | 246 | 1.21e-121 | 347 |
| MS.gene47141.t1 | MTR_6g023600 | 71.488 | 242 | 63 | 1 | 1 | 242 | 1 | 236 | 1.98e-117 | 336 |
| MS.gene47141.t1 | MTR_7g110130 | 51.515 | 231 | 111 | 1 | 12 | 242 | 5 | 234 | 1.46e-76 | 233 |
| MS.gene47141.t1 | MTR_2g090165 | 51.082 | 231 | 111 | 2 | 12 | 242 | 5 | 233 | 5.47e-73 | 224 |
| MS.gene47141.t1 | MTR_7g110140 | 48.163 | 245 | 124 | 3 | 11 | 255 | 4 | 245 | 1.40e-70 | 218 |
| MS.gene47141.t1 | MTR_7g110160 | 48.485 | 231 | 99 | 2 | 12 | 242 | 5 | 215 | 1.74e-66 | 206 |
| MS.gene47141.t1 | MTR_7g105460 | 44.758 | 248 | 135 | 2 | 1 | 248 | 1 | 246 | 1.33e-65 | 205 |
| MS.gene47141.t1 | MTR_6g023940 | 54.206 | 214 | 36 | 3 | 1 | 214 | 1 | 152 | 6.37e-64 | 197 |
| MS.gene47141.t1 | MTR_4g052320 | 45.106 | 235 | 125 | 3 | 8 | 242 | 3 | 233 | 1.35e-62 | 197 |
| MS.gene47141.t1 | MTR_4g052300 | 45.532 | 235 | 123 | 3 | 8 | 242 | 3 | 232 | 2.28e-62 | 197 |
| MS.gene47141.t1 | MTR_4g052340 | 44.589 | 231 | 123 | 3 | 12 | 242 | 13 | 238 | 5.18e-62 | 196 |
| MS.gene47141.t1 | MTR_4g052350 | 45.022 | 231 | 122 | 3 | 12 | 242 | 13 | 238 | 3.30e-61 | 194 |
| MS.gene47141.t1 | MTR_6g035395 | 45.492 | 244 | 117 | 4 | 12 | 255 | 4 | 231 | 2.30e-59 | 188 |
| MS.gene47141.t1 | MTR_4g078630 | 43.697 | 238 | 123 | 4 | 12 | 242 | 18 | 251 | 3.53e-57 | 184 |
| MS.gene47141.t1 | MTR_7g071680 | 41.797 | 256 | 127 | 6 | 12 | 248 | 28 | 280 | 4.94e-57 | 184 |
| MS.gene47141.t1 | MTR_7g107670 | 39.357 | 249 | 141 | 5 | 6 | 248 | 26 | 270 | 2.38e-53 | 174 |
| MS.gene47141.t1 | MTR_7g105590 | 45.026 | 191 | 103 | 2 | 10 | 200 | 5 | 193 | 6.75e-53 | 170 |
| MS.gene47141.t1 | MTR_7g083870 | 40.000 | 245 | 134 | 6 | 6 | 242 | 28 | 267 | 1.69e-50 | 167 |
| MS.gene47141.t1 | MTR_7g105580 | 39.916 | 238 | 123 | 4 | 12 | 249 | 7 | 224 | 2.78e-46 | 155 |
| MS.gene47141.t1 | MTR_3g113870 | 39.437 | 213 | 117 | 5 | 21 | 231 | 29 | 231 | 1.28e-45 | 153 |
| MS.gene47141.t1 | MTR_4g084800 | 48.667 | 150 | 76 | 1 | 1 | 150 | 1 | 149 | 2.42e-45 | 149 |
| MS.gene47141.t1 | MTR_3g020670 | 40.244 | 246 | 138 | 4 | 4 | 242 | 7 | 250 | 5.24e-44 | 150 |
| MS.gene47141.t1 | MTR_7g105570 | 34.746 | 236 | 101 | 2 | 13 | 248 | 21 | 203 | 1.37e-34 | 124 |
| MS.gene47141.t1 | MTR_7g113650 | 34.314 | 204 | 114 | 5 | 12 | 203 | 39 | 234 | 1.83e-26 | 104 |
| MS.gene47141.t1 | MTR_1g082760 | 35.000 | 200 | 118 | 4 | 12 | 203 | 39 | 234 | 1.89e-26 | 104 |
| MS.gene47141.t1 | MTR_7g094510 | 31.092 | 238 | 152 | 5 | 11 | 242 | 4 | 235 | 4.14e-24 | 97.4 |
| MS.gene47141.t1 | MTR_3g085740 | 31.280 | 211 | 135 | 6 | 1 | 207 | 64 | 268 | 1.77e-23 | 97.1 |
| MS.gene47141.t1 | MTR_7g094520 | 31.967 | 244 | 156 | 5 | 4 | 242 | 2 | 240 | 2.23e-23 | 95.9 |
| MS.gene47141.t1 | MTR_4g132850 | 32.479 | 234 | 145 | 6 | 12 | 242 | 6 | 229 | 2.71e-22 | 92.8 |
| MS.gene47141.t1 | MTR_4g131740 | 32.836 | 201 | 122 | 5 | 12 | 203 | 39 | 235 | 8.04e-21 | 89.4 |
| MS.gene47141.t1 | MTR_4g058840 | 31.068 | 206 | 127 | 6 | 13 | 208 | 11 | 211 | 4.31e-20 | 87.0 |
| MS.gene47141.t1 | MTR_4g058820 | 31.068 | 206 | 127 | 6 | 13 | 208 | 11 | 211 | 4.31e-20 | 87.0 |
| MS.gene47141.t1 | MTR_4g058810 | 29.126 | 206 | 131 | 5 | 13 | 208 | 11 | 211 | 2.65e-18 | 82.4 |
| MS.gene47141.t1 | MTR_4g064887 | 31.308 | 214 | 136 | 8 | 1 | 208 | 1 | 209 | 9.43e-18 | 79.7 |
| MS.gene47141.t1 | MTR_4g064887 | 32.057 | 209 | 131 | 8 | 1 | 203 | 1 | 204 | 1.64e-17 | 80.1 |
| MS.gene47141.t1 | MTR_8g096580 | 28.889 | 225 | 132 | 8 | 16 | 232 | 48 | 252 | 5.91e-16 | 76.3 |
| MS.gene47141.t1 | MTR_7g105560 | 59.701 | 67 | 26 | 1 | 1 | 67 | 1 | 66 | 1.09e-15 | 72.4 |
| MS.gene47141.t1 | MTR_1g068955 | 31.667 | 240 | 149 | 7 | 11 | 242 | 12 | 244 | 1.28e-15 | 75.1 |
| MS.gene47141.t1 | MTR_1g051165 | 27.885 | 208 | 138 | 6 | 12 | 208 | 13 | 219 | 9.68e-15 | 72.4 |
| MS.gene47141.t1 | MTR_3g068175 | 30.522 | 249 | 153 | 10 | 3 | 242 | 5 | 242 | 1.86e-14 | 71.6 |
| MS.gene47141.t1 | MTR_1196s0010 | 32.086 | 187 | 113 | 6 | 16 | 197 | 277 | 454 | 3.91e-14 | 72.0 |
| MS.gene47141.t1 | MTR_7g063330 | 29.146 | 199 | 134 | 5 | 13 | 208 | 15 | 209 | 8.91e-14 | 69.7 |
| MS.gene47141.t1 | MTR_7g063360 | 27.413 | 259 | 160 | 8 | 1 | 253 | 1 | 237 | 2.79e-13 | 68.2 |
| MS.gene47141.t1 | MTR_4g086400 | 27.488 | 211 | 129 | 6 | 14 | 207 | 5 | 208 | 3.25e-13 | 69.3 |
| MS.gene47141.t1 | MTR_4g086410 | 28.436 | 211 | 127 | 6 | 14 | 207 | 5 | 208 | 3.57e-13 | 69.3 |
| MS.gene47141.t1 | MTR_8g096620 | 27.411 | 197 | 131 | 6 | 13 | 204 | 45 | 234 | 4.09e-13 | 68.6 |
| MS.gene47141.t1 | MTR_3g068085 | 31.628 | 215 | 130 | 9 | 2 | 208 | 4 | 209 | 9.38e-13 | 66.6 |
| MS.gene47141.t1 | MTR_3g068175 | 30.040 | 253 | 153 | 11 | 3 | 242 | 5 | 246 | 2.20e-12 | 65.9 |
| MS.gene47141.t1 | MTR_3g068070 | 26.800 | 250 | 150 | 8 | 3 | 247 | 5 | 226 | 1.08e-11 | 63.5 |
| MS.gene47141.t1 | MTR_4g134660 | 26.214 | 206 | 147 | 5 | 10 | 212 | 3 | 206 | 1.80e-11 | 62.8 |
| MS.gene47141.t1 | MTR_4g097510 | 26.984 | 189 | 132 | 5 | 16 | 203 | 5 | 188 | 2.18e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47141.t1 | AT2G47140 | 49.573 | 234 | 116 | 2 | 9 | 242 | 2 | 233 | 6.39e-75 | 228 |
| MS.gene47141.t1 | AT3G29260 | 49.798 | 247 | 120 | 4 | 9 | 255 | 2 | 244 | 1.88e-70 | 217 |
| MS.gene47141.t1 | AT2G47130 | 48.945 | 237 | 112 | 4 | 9 | 242 | 2 | 232 | 2.32e-70 | 217 |
| MS.gene47141.t1 | AT2G47120 | 47.436 | 234 | 119 | 4 | 9 | 242 | 2 | 231 | 1.75e-68 | 212 |
| MS.gene47141.t1 | AT3G29250 | 46.559 | 247 | 129 | 3 | 9 | 255 | 2 | 245 | 2.39e-68 | 212 |
| MS.gene47141.t1 | AT3G29250 | 46.586 | 249 | 130 | 3 | 7 | 255 | 36 | 281 | 3.60e-68 | 213 |
| MS.gene47141.t1 | AT2G47120 | 47.186 | 231 | 118 | 4 | 12 | 242 | 6 | 232 | 7.65e-67 | 208 |
| MS.gene47141.t1 | AT3G29250 | 45.850 | 253 | 132 | 4 | 5 | 255 | 34 | 283 | 3.21e-66 | 207 |
| MS.gene47141.t1 | AT3G51680 | 41.729 | 266 | 133 | 5 | 1 | 248 | 20 | 281 | 3.94e-57 | 184 |
| MS.gene47141.t1 | AT3G26760 | 41.004 | 239 | 130 | 6 | 12 | 242 | 35 | 270 | 8.25e-53 | 173 |
| MS.gene47141.t1 | AT3G26770 | 39.167 | 240 | 131 | 6 | 12 | 242 | 40 | 273 | 5.50e-50 | 166 |
| MS.gene47141.t1 | AT1G52340 | 40.486 | 247 | 135 | 5 | 12 | 248 | 17 | 261 | 1.27e-46 | 157 |
| MS.gene47141.t1 | AT4G03140 | 38.559 | 236 | 137 | 4 | 12 | 242 | 77 | 309 | 1.53e-46 | 158 |
| MS.gene47141.t1 | AT3G42960 | 38.683 | 243 | 136 | 5 | 8 | 242 | 3 | 240 | 1.15e-42 | 146 |
| MS.gene47141.t1 | AT5G18210 | 34.874 | 238 | 142 | 5 | 13 | 242 | 8 | 240 | 2.26e-27 | 106 |
| MS.gene47141.t1 | AT5G18210 | 34.874 | 238 | 142 | 5 | 13 | 242 | 8 | 240 | 2.36e-27 | 106 |
| MS.gene47141.t1 | AT1G54870 | 35.323 | 201 | 116 | 5 | 12 | 203 | 81 | 276 | 5.93e-27 | 107 |
| MS.gene47141.t1 | AT3G05260 | 33.962 | 212 | 125 | 5 | 2 | 203 | 24 | 230 | 5.98e-27 | 105 |
| MS.gene47141.t1 | AT1G54870 | 35.323 | 201 | 116 | 5 | 12 | 203 | 83 | 278 | 6.25e-27 | 106 |
| MS.gene47141.t1 | AT3G04000 | 33.203 | 256 | 152 | 6 | 1 | 242 | 1 | 251 | 8.49e-24 | 97.1 |
| MS.gene47141.t1 | AT3G03980 | 31.557 | 244 | 150 | 5 | 11 | 242 | 12 | 250 | 1.75e-22 | 93.6 |
| MS.gene47141.t1 | AT2G47150 | 32.759 | 232 | 97 | 9 | 13 | 242 | 1 | 175 | 1.22e-21 | 89.7 |
| MS.gene47141.t1 | AT1G24360 | 28.500 | 200 | 134 | 5 | 12 | 207 | 73 | 267 | 1.50e-19 | 86.3 |
| MS.gene47141.t1 | AT4G13180 | 28.511 | 235 | 136 | 7 | 1 | 218 | 1 | 220 | 1.59e-19 | 85.5 |
| MS.gene47141.t1 | AT4G05530 | 30.348 | 201 | 134 | 4 | 12 | 211 | 8 | 203 | 1.98e-18 | 82.4 |
| MS.gene47141.t1 | AT1G63380 | 29.412 | 204 | 134 | 6 | 13 | 208 | 15 | 216 | 2.58e-18 | 82.4 |
| MS.gene47141.t1 | AT1G63380 | 29.268 | 205 | 135 | 6 | 12 | 208 | 18 | 220 | 2.78e-18 | 82.4 |
| MS.gene47141.t1 | AT1G63380 | 29.268 | 205 | 135 | 6 | 12 | 208 | 16 | 218 | 3.17e-18 | 82.4 |
| MS.gene47141.t1 | AT1G63380 | 29.268 | 205 | 135 | 6 | 12 | 208 | 21 | 223 | 3.60e-18 | 82.0 |
| MS.gene47141.t1 | AT1G62610 | 28.922 | 204 | 135 | 6 | 13 | 208 | 15 | 216 | 1.46e-17 | 80.5 |
| MS.gene47141.t1 | AT1G62610 | 28.780 | 205 | 136 | 6 | 12 | 208 | 18 | 220 | 1.65e-17 | 80.1 |
| MS.gene47141.t1 | AT1G62610 | 28.922 | 204 | 135 | 6 | 13 | 208 | 13 | 214 | 1.65e-17 | 80.1 |
| MS.gene47141.t1 | AT1G62610 | 28.922 | 204 | 135 | 6 | 13 | 208 | 14 | 215 | 1.78e-17 | 80.1 |
| MS.gene47141.t1 | AT3G46170 | 27.354 | 223 | 147 | 6 | 12 | 221 | 25 | 245 | 2.17e-17 | 80.1 |
| MS.gene47141.t1 | AT3G47350 | 25.381 | 197 | 135 | 5 | 13 | 204 | 44 | 233 | 6.60e-17 | 79.0 |
| MS.gene47141.t1 | AT3G47350 | 25.381 | 197 | 135 | 5 | 13 | 204 | 44 | 233 | 8.45e-17 | 79.0 |
| MS.gene47141.t1 | AT5G50770 | 30.481 | 187 | 122 | 5 | 13 | 196 | 45 | 226 | 1.06e-16 | 78.6 |
| MS.gene47141.t1 | AT3G47360 | 26.904 | 197 | 132 | 5 | 13 | 204 | 45 | 234 | 3.72e-16 | 77.0 |
| MS.gene47141.t1 | AT3G55310 | 27.556 | 225 | 144 | 7 | 12 | 221 | 16 | 236 | 4.60e-16 | 76.3 |
| MS.gene47141.t1 | AT5G50690 | 29.444 | 180 | 112 | 6 | 12 | 184 | 44 | 215 | 4.84e-16 | 75.9 |
| MS.gene47141.t1 | AT5G50590 | 29.444 | 180 | 112 | 6 | 12 | 184 | 44 | 215 | 4.84e-16 | 75.9 |
| MS.gene47141.t1 | AT5G50690 | 29.444 | 180 | 112 | 6 | 12 | 184 | 44 | 215 | 6.79e-16 | 75.9 |
| MS.gene47141.t1 | AT5G50590 | 29.444 | 180 | 112 | 6 | 12 | 184 | 44 | 215 | 6.79e-16 | 75.9 |
| MS.gene47141.t1 | AT3G55290 | 26.906 | 223 | 148 | 6 | 12 | 221 | 16 | 236 | 9.90e-16 | 75.1 |
| MS.gene47141.t1 | AT3G55290 | 26.906 | 223 | 148 | 6 | 12 | 221 | 17 | 237 | 1.16e-15 | 75.1 |
| MS.gene47141.t1 | AT2G29340 | 28.431 | 204 | 133 | 6 | 11 | 208 | 5 | 201 | 1.92e-15 | 73.2 |
| MS.gene47141.t1 | AT2G29340 | 28.431 | 204 | 133 | 6 | 11 | 208 | 5 | 201 | 1.92e-15 | 73.2 |
| MS.gene47141.t1 | AT5G50600 | 25.258 | 194 | 139 | 4 | 13 | 204 | 45 | 234 | 2.27e-15 | 75.1 |
| MS.gene47141.t1 | AT5G50700 | 25.258 | 194 | 139 | 4 | 13 | 204 | 45 | 234 | 2.27e-15 | 75.1 |
| MS.gene47141.t1 | AT2G29340 | 28.571 | 203 | 134 | 6 | 11 | 208 | 5 | 201 | 2.74e-15 | 73.9 |
| MS.gene47141.t1 | AT2G29340 | 28.856 | 201 | 132 | 6 | 13 | 208 | 7 | 201 | 4.79e-15 | 73.6 |
| MS.gene47141.t1 | AT2G30670 | 27.805 | 205 | 133 | 6 | 11 | 208 | 5 | 201 | 7.40e-15 | 72.8 |
| MS.gene47141.t1 | AT2G29310 | 30.000 | 210 | 118 | 9 | 13 | 208 | 7 | 201 | 5.82e-14 | 68.9 |
| MS.gene47141.t1 | AT5G06060 | 28.033 | 239 | 134 | 7 | 7 | 232 | 3 | 216 | 5.93e-14 | 70.1 |
| MS.gene47141.t1 | AT2G29310 | 30.476 | 210 | 117 | 9 | 13 | 208 | 7 | 201 | 7.64e-14 | 69.7 |
| MS.gene47141.t1 | AT2G29370 | 28.643 | 199 | 137 | 4 | 13 | 209 | 16 | 211 | 9.84e-14 | 69.7 |
| MS.gene47141.t1 | AT2G17845 | 28.641 | 206 | 135 | 6 | 13 | 208 | 47 | 250 | 7.43e-13 | 67.4 |
| MS.gene47141.t1 | AT2G29150 | 30.288 | 208 | 131 | 7 | 3 | 204 | 6 | 205 | 1.23e-12 | 66.2 |
| MS.gene47141.t1 | AT2G29350 | 29.353 | 201 | 133 | 6 | 8 | 204 | 10 | 205 | 1.45e-12 | 65.5 |
| MS.gene47141.t1 | AT2G29350 | 29.353 | 201 | 133 | 6 | 8 | 204 | 10 | 205 | 3.25e-12 | 65.1 |
| MS.gene47141.t1 | AT2G29260 | 26.923 | 234 | 159 | 7 | 13 | 242 | 68 | 293 | 9.54e-12 | 64.3 |
| MS.gene47141.t1 | AT1G07450 | 30.435 | 207 | 128 | 9 | 9 | 208 | 4 | 201 | 4.26e-11 | 62.0 |
| MS.gene47141.t1 | AT3G47350 | 30.189 | 106 | 68 | 2 | 13 | 116 | 44 | 145 | 4.81e-11 | 62.0 |
| MS.gene47141.t1 | AT2G29330 | 27.136 | 199 | 138 | 5 | 13 | 208 | 7 | 201 | 5.80e-11 | 61.6 |
Find 72 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCACCCTTATCCCATATT+TGG | 0.193090 | 6.3:+16795209 | None:intergenic |
| TCCATCTGATCAGACTATTT+TGG | 0.219303 | 6.3:-16795454 | MS.gene47141:CDS |
| ATATCGAAGCATGCAATAAT+AGG | 0.242360 | 6.3:-16795261 | MS.gene47141:CDS |
| CATCTACTAACAACGGTCTT+AGG | 0.262828 | 6.3:-16796938 | MS.gene47141:CDS |
| CCATTGACTATGAGATTGTT+AGG | 0.292303 | 6.3:-16795159 | MS.gene47141:CDS |
| AGTGTGCAACTTGCCAAATA+TGG | 0.311353 | 6.3:-16795222 | MS.gene47141:CDS |
| GGCAGATGCTGTGTTGTTCT+TGG | 0.317529 | 6.3:-16795058 | MS.gene47141:intron |
| CAATCAACGGTCAATGCTTA+TGG | 0.322095 | 6.3:-16796705 | MS.gene47141:CDS |
| ATTTGAACACGGCGTCTAGA+AGG | 0.357339 | 6.3:+16793127 | None:intergenic |
| GATATTATGTTTAGCAATGC+TGG | 0.362324 | 6.3:-16795486 | MS.gene47141:CDS |
| GCCAATGCCACTGGCACCTC+CGG | 0.395916 | 6.3:+16796890 | None:intergenic |
| CAATGGTGGAGGGGCGCGTG+AGG | 0.412179 | 6.3:-16795350 | MS.gene47141:CDS |
| TTATGAACAAAACAAGAGAT+TGG | 0.413460 | 6.3:-16795109 | MS.gene47141:CDS |
| CGTCTCTTTGCCAATGCCAC+TGG | 0.416288 | 6.3:+16796881 | None:intergenic |
| TGTGTGCACAGCGTCCGTCC+TGG | 0.420600 | 6.3:-16795319 | MS.gene47141:CDS |
| AATGGTGTTGCTAATCCATT+TGG | 0.430166 | 6.3:+16795177 | None:intergenic |
| AACTTGCCAAATATGGGATA+AGG | 0.435956 | 6.3:-16795215 | MS.gene47141:CDS |
| CACCATGCGTGCACCTTGAT+CGG | 0.442941 | 6.3:+16796845 | None:intergenic |
| CTGCATCCATTGGCGGCCAC+AGG | 0.444834 | 6.3:-16796782 | MS.gene47141:CDS |
| ACCGGAGGTGCCAGTGGCAT+TGG | 0.446047 | 6.3:-16796891 | MS.gene47141:CDS |
| AATGGTGGAGGGGCGCGTGA+GGG | 0.448062 | 6.3:-16795349 | MS.gene47141:CDS |
| TATCGAAGCATGCAATAATA+GGG | 0.448557 | 6.3:-16795260 | MS.gene47141:CDS |
| GTGAATTGTGTCTCGCCAAA+TGG | 0.451124 | 6.3:-16795192 | MS.gene47141:CDS |
| CGCGGCGCGTGCAATGGTGG+AGG | 0.462300 | 6.3:-16795361 | MS.gene47141:CDS |
| ACTTGCCAAATATGGGATAA+GGG | 0.469695 | 6.3:-16795214 | MS.gene47141:CDS |
| AATCAAGTGGCTGCATCCAT+TGG | 0.471481 | 6.3:-16796792 | MS.gene47141:CDS |
| GCGCATCTCTTTGCCGATCA+AGG | 0.473582 | 6.3:-16796858 | MS.gene47141:CDS |
| GTGTTTGCAGTTAACATTCG+AGG | 0.478434 | 6.3:-16795405 | MS.gene47141:CDS |
| GCTGACATTCAAGACGAGTT+GGG | 0.480846 | 6.3:-16796816 | MS.gene47141:CDS |
| ATGGTGGAGGGGCGCGTGAG+GGG | 0.485342 | 6.3:-16795348 | MS.gene47141:CDS |
| CATTGACTATGAGATTGTTA+GGG | 0.487258 | 6.3:-16795158 | MS.gene47141:CDS |
| TGCTGACATTCAAGACGAGT+TGG | 0.487544 | 6.3:-16796817 | MS.gene47141:CDS |
| GGTGACGATGGCTACTTTGC+CGG | 0.490347 | 6.3:+16796911 | None:intergenic |
| GTGTGCAACTTGCCAAATAT+GGG | 0.491153 | 6.3:-16795221 | MS.gene47141:CDS |
| GGTGCTCCTGTGGCCGCCAA+TGG | 0.498816 | 6.3:+16796776 | None:intergenic |
| GCGGCGCGTGCAATGGTGGA+GGG | 0.502098 | 6.3:-16795360 | MS.gene47141:CDS |
| GTGTGCACAGCGTCCGTCCT+GGG | 0.507953 | 6.3:-16795318 | MS.gene47141:CDS |
| CCTAACAATCTCATAGTCAA+TGG | 0.517810 | 6.3:+16795159 | None:intergenic |
| ATATTATGTTTAGCAATGCT+GGG | 0.517928 | 6.3:-16795485 | MS.gene47141:CDS |
| AACAACGGTCTTAGGTTAGC+CGG | 0.520911 | 6.3:-16796930 | MS.gene47141:CDS |
| GAAATACGCGGCGCGTGCAA+TGG | 0.524610 | 6.3:-16795367 | MS.gene47141:CDS |
| AACGGTCAATGCTTATGGAC+AGG | 0.524985 | 6.3:-16796700 | MS.gene47141:intron |
| TTTGAACACGGCGTCTAGAA+GGG | 0.525893 | 6.3:+16793128 | None:intergenic |
| TCCAAAATAGTCTGATCAGA+TGG | 0.534810 | 6.3:+16795453 | None:intergenic |
| GGCAAAGTAGCCATCGTCAC+CGG | 0.538495 | 6.3:-16796909 | MS.gene47141:CDS |
| GAACAAAACAAGAGATTGGA+AGG | 0.539933 | 6.3:-16795105 | MS.gene47141:CDS |
| TGCCGATCAAGGTGCACGCA+TGG | 0.543365 | 6.3:-16796847 | MS.gene47141:CDS |
| ATACGCGGCGCGTGCAATGG+TGG | 0.549661 | 6.3:-16795364 | MS.gene47141:CDS |
| CAGTGGCATTGGCAAAGAGA+CGG | 0.560685 | 6.3:-16796880 | MS.gene47141:CDS |
| ACTGGCACCTCCGGTGACGA+TGG | 0.561243 | 6.3:+16796899 | None:intergenic |
| ATCGTCACCGGAGGTGCCAG+TGG | 0.562053 | 6.3:-16796897 | MS.gene47141:CDS |
| CAAGTGGCTGCATCCATTGG+CGG | 0.565708 | 6.3:-16796789 | MS.gene47141:CDS |
| CGGCGCGTGCAATGGTGGAG+GGG | 0.566170 | 6.3:-16795359 | MS.gene47141:CDS |
| GCGTCCGTCCTGGGTAGCGT+AGG | 0.569550 | 6.3:-16795309 | MS.gene47141:CDS |
| TGCTATGTCACAATGGATGA+AGG | 0.590504 | 6.3:+16796755 | None:intergenic |
| TCAAGACACCTACGCTACCC+AGG | 0.598002 | 6.3:+16795301 | None:intergenic |
| AAACAAGAGATTGGAAGGAG+TGG | 0.601180 | 6.3:-16795100 | MS.gene47141:CDS |
| AGACGAGTTGGGCAATCAAG+TGG | 0.608891 | 6.3:-16796805 | MS.gene47141:CDS |
| AATAATAGGGTTGATGCGCT+CGG | 0.618943 | 6.3:-16795247 | MS.gene47141:CDS |
| TCTTATCTTTGATTTGAACA+CGG | 0.620333 | 6.3:+16793116 | None:intergenic |
| GACACCTACGCTACCCAGGA+CGG | 0.620647 | 6.3:+16795305 | None:intergenic |
| GAATGTTAACTGCAAACACA+TGG | 0.631228 | 6.3:+16795409 | None:intergenic |
| TTGAACACGGCGTCTAGAAG+GGG | 0.631851 | 6.3:+16793129 | None:intergenic |
| CTTCATTTGCTATGTCACAA+TGG | 0.633784 | 6.3:+16796748 | None:intergenic |
| AATGGATGAAGGTGCTCCTG+TGG | 0.649213 | 6.3:+16796766 | None:intergenic |
| AAAGTAGCCATCGTCACCGG+AGG | 0.651370 | 6.3:-16796906 | MS.gene47141:CDS |
| ATTGACTATGAGATTGTTAG+GGG | 0.661906 | 6.3:-16795157 | MS.gene47141:CDS |
| TGGGTAGCGTAGGTGTCTTG+AGG | 0.663825 | 6.3:-16795299 | MS.gene47141:CDS |
| GACATTGTGCGTGAAATACG+CGG | 0.664173 | 6.3:-16795379 | MS.gene47141:CDS |
| CGATCAAGGTGCACGCATGG+TGG | 0.678300 | 6.3:-16796844 | MS.gene47141:CDS |
| GGTTCTTAACACTAAACATG+TGG | 0.680290 | 6.3:-16795079 | MS.gene47141:CDS |
| GAAGCTTCATCTACTAACAA+CGG | 0.689074 | 6.3:-16796945 | MS.gene47141:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATTATATTAAATAAA+TGG | + | chr6.3:16795549-16795568 | None:intergenic | 0.0% |
| !! | AAAAATTATATTAAATAAAT+GGG | + | chr6.3:16795548-16795567 | None:intergenic | 0.0% |
| !!! | ATAAAATAAAATTTTTTTAT+AGG | - | chr6.3:16794384-16794403 | MS.gene47141:intron | 0.0% |
| !!! | TAAAATAAAATTTTTTTATA+GGG | - | chr6.3:16794385-16794404 | MS.gene47141:intron | 0.0% |
| !! | ATAAAAATTAAACTATATCA+TGG | - | chr6.3:16795514-16795533 | MS.gene47141:intron | 10.0% |
| !! | TAAAAATTAAACTATATCAT+GGG | - | chr6.3:16795515-16795534 | MS.gene47141:intron | 10.0% |
| !! | TTAAAAAATTTAAGAGTTTA+AGG | + | chr6.3:16793672-16793691 | None:intergenic | 10.0% |
| !!! | ATAAGTAATTTTTTTTTTGT+AGG | + | chr6.3:16793611-16793630 | None:intergenic | 10.0% |
| !!! | TAAGTAATTTTTTTTTTGTA+GGG | + | chr6.3:16793610-16793629 | None:intergenic | 10.0% |
| !!! | TGTTTAATTTTTAATTCAAA+AGG | - | chr6.3:16795988-16796007 | MS.gene47141:intron | 10.0% |
| !!! | TTGACATTTATTTAATTTAA+TGG | + | chr6.3:16796072-16796091 | None:intergenic | 10.0% |
| !!! | TTTTAACATGTTTAAATTTT+GGG | - | chr6.3:16793507-16793526 | MS.gene47141:intron | 10.0% |
| !! | AAAGCTATTAAAATTAAGTA+AGG | - | chr6.3:16793994-16794013 | MS.gene47141:intron | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | + | chr6.3:16795266-16795285 | None:intergenic | 15.0% |
| !! | AAGCATAAATTAAACAAATT+TGG | - | chr6.3:16793922-16793941 | MS.gene47141:intron | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | - | chr6.3:16795265-16795284 | MS.gene47141:CDS | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+AGG | + | chr6.3:16793581-16793600 | None:intergenic | 15.0% |
| !! | ACATTATAATGTAGAAATTA+TGG | + | chr6.3:16794236-16794255 | None:intergenic | 15.0% |
| !! | CTTATATTGAATTTATTTGA+AGG | - | chr6.3:16795412-16795431 | MS.gene47141:CDS | 15.0% |
| !!! | AAACAAAATTTATTTTAGCA+GGG | + | chr6.3:16793643-16793662 | None:intergenic | 15.0% |
| !!! | ATAAAGTCTTATATAGTAAA+CGG | + | chr6.3:16794430-16794449 | None:intergenic | 15.0% |
| !!! | ATTTATGTATGACATTTTTT+TGG | - | chr6.3:16795848-16795867 | MS.gene47141:intron | 15.0% |
| !!! | CATTTTGAAACAATTTTTTT+TGG | + | chr6.3:16795139-16795158 | None:intergenic | 15.0% |
| !!! | GTTTTAACATGTTTAAATTT+TGG | - | chr6.3:16793506-16793525 | MS.gene47141:intron | 15.0% |
| !!! | TAAACAAAATTTATTTTAGC+AGG | + | chr6.3:16793644-16793663 | None:intergenic | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | + | chr6.3:16795242-16795261 | None:intergenic | 15.0% |
| !! | AAAAAATCTCATTCAATCAA+CGG | - | chr6.3:16793344-16793363 | MS.gene47141:intron | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | - | chr6.3:16795256-16795275 | MS.gene47141:CDS | 20.0% |
| !! | AAATAGTTTGATTCTACAAA+GGG | + | chr6.3:16796898-16796917 | None:intergenic | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | + | chr6.3:16795179-16795198 | None:intergenic | 20.0% |
| !! | TGCAACAATCTAAAAAATTT+AGG | + | chr6.3:16796579-16796598 | None:intergenic | 20.0% |
| !! | TTATACTTATAATGAACCAA+AGG | + | chr6.3:16795748-16795767 | None:intergenic | 20.0% |
| !!! | AAAGGGTTTAAATTTTCTTT+TGG | + | chr6.3:16796881-16796900 | None:intergenic | 20.0% |
| !!! | GAAAGAAAAAGTTGTTTTTT+AGG | + | chr6.3:16794540-16794559 | None:intergenic | 20.0% |
| !!! | GTTTTTCAACAATTTTTTAC+AGG | + | chr6.3:16793892-16793911 | None:intergenic | 20.0% |
| !!! | TAAAGTCTTATATAGTAAAC+GGG | + | chr6.3:16794429-16794448 | None:intergenic | 20.0% |
| !!! | TACTGATAGTATAATTTTGT+AGG | - | chr6.3:16794323-16794342 | MS.gene47141:intron | 20.0% |
| !!! | TGAAGAATTTGAAGTTTTTT+GGG | + | chr6.3:16794086-16794105 | None:intergenic | 20.0% |
| !!! | TTAAGGGTTAATTATGTTTT+TGG | + | chr6.3:16794052-16794071 | None:intergenic | 20.0% |
| !!! | TTGAAGAATTTGAAGTTTTT+TGG | + | chr6.3:16794087-16794106 | None:intergenic | 20.0% |
| !!! | TTTTGGGTTAAATAAGTTTT+TGG | - | chr6.3:16793523-16793542 | MS.gene47141:intron | 20.0% |
| ! | AAGAAGTAAGACATATAAGA+GGG | - | chr6.3:16796446-16796465 | MS.gene47141:intron | 25.0% |
| ! | AATGATTAAGAGAAAGAGAA+TGG | + | chr6.3:16795299-16795318 | None:intergenic | 25.0% |
| ! | AATTGTCAAAATAAACCTCA+TGG | + | chr6.3:16796530-16796549 | None:intergenic | 25.0% |
| ! | ATATTATGTTTAGCAATGCT+GGG | - | chr6.3:16794577-16794596 | MS.gene47141:intron | 25.0% |
| ! | ATGGTTTCTTGTTAAGAAAA+AGG | + | chr6.3:16796505-16796524 | None:intergenic | 25.0% |
| ! | CAAAATTTCATAATACACGT+AGG | + | chr6.3:16793422-16793441 | None:intergenic | 25.0% |
| ! | GAAATAGTTTGATTCTACAA+AGG | + | chr6.3:16796899-16796918 | None:intergenic | 25.0% |
| ! | GTGTTAAGAACGTTATTAAA+AGG | + | chr6.3:16793868-16793887 | None:intergenic | 25.0% |
| ! | TAAGAAGTAAGACATATAAG+AGG | - | chr6.3:16796445-16796464 | MS.gene47141:intron | 25.0% |
| ! | TCTTACAACTATTTAGATGA+TGG | + | chr6.3:16795692-16795711 | None:intergenic | 25.0% |
| ! | TTATGAACAAAACAAGAGAT+TGG | - | chr6.3:16794953-16794972 | MS.gene47141:intron | 25.0% |
| ! | TTGGGGAATGAAAAATTTAA+GGG | + | chr6.3:16794068-16794087 | None:intergenic | 25.0% |
| ! | TTTGGGGAATGAAAAATTTA+AGG | + | chr6.3:16794069-16794088 | None:intergenic | 25.0% |
| !! | AAAGTCTTATATAGTAAACG+GGG | + | chr6.3:16794428-16794447 | None:intergenic | 25.0% |
| !! | GGTGTTTGTTTATTTAAAGT+AGG | + | chr6.3:16796419-16796438 | None:intergenic | 25.0% |
| !! | TTTCTTTTGGCATTAATTCT+TGG | + | chr6.3:16796868-16796887 | None:intergenic | 25.0% |
| !!! | CAATTTTAGAACACTATGAA+AGG | - | chr6.3:16793706-16793725 | MS.gene47141:intron | 25.0% |
| !!! | GAAGAATTTGAAGTTTTTTG+GGG | + | chr6.3:16794085-16794104 | None:intergenic | 25.0% |
| !!! | TATTGTAGATGTAGTTTTGT+CGG | + | chr6.3:16796738-16796757 | None:intergenic | 25.0% |
| !!! | TCTTATCTTTGATTTGAACA+CGG | + | chr6.3:16796949-16796968 | None:intergenic | 25.0% |
| AAAAAATTCCTCACACTTCT+AGG | - | chr6.3:16795438-16795457 | MS.gene47141:CDS | 30.0% | |
| AAACAAATTTGGATCGAGTA+AGG | - | chr6.3:16793933-16793952 | MS.gene47141:intron | 30.0% | |
| AACATAATATCTACCTGTTG+TGG | + | chr6.3:16794567-16794586 | None:intergenic | 30.0% | |
| AACGTTATTAAAAGGTCCTT+CGG | + | chr6.3:16793860-16793879 | None:intergenic | 30.0% | |
| AACTACATCTACAATACAAG+TGG | - | chr6.3:16796742-16796761 | MS.gene47141:CDS | 30.0% | |
| AAGTAAGGACTAAACTTACA+AGG | - | chr6.3:16794009-16794028 | MS.gene47141:intron | 30.0% | |
| AAGTAAGGACTAAACTTAGA+AGG | + | chr6.3:16793566-16793585 | None:intergenic | 30.0% | |
| ATATCGAAGCATGCAATAAT+AGG | - | chr6.3:16794801-16794820 | MS.gene47141:intron | 30.0% | |
| ATGTCTTACTTCTTAGTGTA+CGG | + | chr6.3:16796440-16796459 | None:intergenic | 30.0% | |
| ATTGACTATGAGATTGTTAG+GGG | - | chr6.3:16794905-16794924 | MS.gene47141:intron | 30.0% | |
| GACAATGCATAAAATATGCA+AGG | + | chr6.3:16795899-16795918 | None:intergenic | 30.0% | |
| GATATTATGTTTAGCAATGC+TGG | - | chr6.3:16794576-16794595 | MS.gene47141:intron | 30.0% | |
| GCTAATCATATCCAAAAATG+TGG | + | chr6.3:16796676-16796695 | None:intergenic | 30.0% | |
| GGACAGGTAAAAATTAACTA+GGG | - | chr6.3:16793378-16793397 | MS.gene47141:intron | 30.0% | |
| GTAAACAAGACACTTATGTA+TGG | - | chr6.3:16796208-16796227 | MS.gene47141:intron | 30.0% | |
| GTAGTGTGCAGAATATTAAT+TGG | + | chr6.3:16795217-16795236 | None:intergenic | 30.0% | |
| GTTTCTTGTTAAGAAAAAGG+AGG | + | chr6.3:16796502-16796521 | None:intergenic | 30.0% | |
| TAAATCTTGCATTATGCACA+AGG | - | chr6.3:16796016-16796035 | MS.gene47141:intron | 30.0% | |
| TATCGAAGCATGCAATAATA+GGG | - | chr6.3:16794802-16794821 | MS.gene47141:intron | 30.0% | |
| TATTTCTCACTCTACAATGA+AGG | - | chr6.3:16795634-16795653 | MS.gene47141:intron | 30.0% | |
| TGCATAAAATATGCAAGGTT+CGG | + | chr6.3:16795894-16795913 | None:intergenic | 30.0% | |
| TGGACAGGTAAAAATTAACT+AGG | - | chr6.3:16793377-16793396 | MS.gene47141:intron | 30.0% | |
| TGTGCAGAATATTAATTGGA+GGG | + | chr6.3:16795213-16795232 | None:intergenic | 30.0% | |
| TTAAACTATATCATGGGCTT+TGG | - | chr6.3:16795521-16795540 | MS.gene47141:intron | 30.0% | |
| TTGAATGTGTTTCACGTTTA+GGG | + | chr6.3:16796785-16796804 | None:intergenic | 30.0% | |
| TTTGAATGTGTTTCACGTTT+AGG | + | chr6.3:16796786-16796805 | None:intergenic | 30.0% | |
| TTTGTAAGTGTGTTTGAACA+AGG | + | chr6.3:16796698-16796717 | None:intergenic | 30.0% | |
| ! | CATTGACTATGAGATTGTTA+GGG | - | chr6.3:16794904-16794923 | MS.gene47141:intron | 30.0% |
| ! | TAACTTTAATTAGTCTCTGC+TGG | + | chr6.3:16794305-16794324 | None:intergenic | 30.0% |
| ! | TACAAGGTTGCAATTTTGTA+GGG | - | chr6.3:16794025-16794044 | MS.gene47141:intron | 30.0% |
| ! | TAGAAGGTCGCAATTTTATA+GGG | + | chr6.3:16793550-16793569 | None:intergenic | 30.0% |
| ! | TATGAGAGAAACCACATTTT+TGG | - | chr6.3:16796662-16796681 | MS.gene47141:intron | 30.0% |
| ! | TTACAAGGTTGCAATTTTGT+AGG | - | chr6.3:16794024-16794043 | MS.gene47141:intron | 30.0% |
| ! | TTAGAAGGTCGCAATTTTAT+AGG | + | chr6.3:16793551-16793570 | None:intergenic | 30.0% |
| ! | TTTTCTTTCTTTTCCACAAC+AGG | - | chr6.3:16794551-16794570 | MS.gene47141:intron | 30.0% |
| !! | GAGTGCAGAATATTTTTGTA+GGG | - | chr6.3:16793965-16793984 | MS.gene47141:intron | 30.0% |
| !! | TGAGTGCAGAATATTTTTGT+AGG | - | chr6.3:16793964-16793983 | MS.gene47141:intron | 30.0% |
| !!! | TTTTGCGATATTTTTTCCGA+AGG | - | chr6.3:16793841-16793860 | MS.gene47141:intron | 30.0% |
| AACTTGCCAAATATGGGATA+AGG | - | chr6.3:16794847-16794866 | MS.gene47141:intron | 35.0% | |
| AATGAATCTGACTTTGTCAC+TGG | - | chr6.3:16795032-16795051 | MS.gene47141:intron | 35.0% | |
| ACTTGCCAAATATGGGATAA+GGG | - | chr6.3:16794848-16794867 | MS.gene47141:intron | 35.0% | |
| ATACTTCTTAGTCAGAGAAG+AGG | - | chr6.3:16796625-16796644 | MS.gene47141:intron | 35.0% | |
| ATGTGAAGTAGAAGAGATTG+TGG | + | chr6.3:16796554-16796573 | None:intergenic | 35.0% | |
| ATTCACCCTTATCCCATATT+TGG | + | chr6.3:16794856-16794875 | None:intergenic | 35.0% | |
| CAAAATAAACCTCATGGAGA+TGG | + | chr6.3:16796524-16796543 | None:intergenic | 35.0% | |
| CATAAAATATGCAAGGTTCG+GGG | + | chr6.3:16795892-16795911 | None:intergenic | 35.0% | |
| CATTGTAGAGTGAGAAATAC+AGG | + | chr6.3:16795633-16795652 | None:intergenic | 35.0% | |
| CCTAACAATCTCATAGTCAA+TGG | + | chr6.3:16794906-16794925 | None:intergenic | 35.0% | |
| CGTGAGATTTATTGATCCAA+TGG | + | chr6.3:16796153-16796172 | None:intergenic | 35.0% | |
| GAACAAAACAAGAGATTGGA+AGG | - | chr6.3:16794957-16794976 | MS.gene47141:intron | 35.0% | |
| GAAGCTTCATCTACTAACAA+CGG | - | chr6.3:16793117-16793136 | MS.gene47141:CDS | 35.0% | |
| GAATGTTAACTGCAAACACA+TGG | + | chr6.3:16794656-16794675 | None:intergenic | 35.0% | |
| GATGTGAGTTATTGATCTAG+TGG | - | chr6.3:16796186-16796205 | MS.gene47141:intron | 35.0% | |
| GCATAAAATATGCAAGGTTC+GGG | + | chr6.3:16795893-16795912 | None:intergenic | 35.0% | |
| GGTTCTTAACACTAAACATG+TGG | - | chr6.3:16794983-16795002 | MS.gene47141:intron | 35.0% | |
| GTGTGCAGAATATTAATTGG+AGG | + | chr6.3:16795214-16795233 | None:intergenic | 35.0% | |
| TACTTCTTAGTCAGAGAAGA+GGG | - | chr6.3:16796626-16796645 | MS.gene47141:intron | 35.0% | |
| TCCAAAATAGTCTGATCAGA+TGG | + | chr6.3:16794612-16794631 | None:intergenic | 35.0% | |
| TCTTGGTAGACTTTCTATCT+GGG | + | chr6.3:16796851-16796870 | None:intergenic | 35.0% | |
| TTCGTTATGCGCAAACAAAA+TGG | + | chr6.3:16796241-16796260 | None:intergenic | 35.0% | |
| TTCTTGGTAGACTTTCTATC+TGG | + | chr6.3:16796852-16796871 | None:intergenic | 35.0% | |
| ! | CCATTGACTATGAGATTGTT+AGG | - | chr6.3:16794903-16794922 | MS.gene47141:intron | 35.0% |
| ! | TCCATCTGATCAGACTATTT+TGG | - | chr6.3:16794608-16794627 | MS.gene47141:intron | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | - | chr6.3:16795348-16795367 | MS.gene47141:CDS | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | + | chr6.3:16795367-16795348 | None:intergenic | 35.0% |
| !! | AATGGTGTTGCTAATCCATT+TGG | + | chr6.3:16794888-16794907 | None:intergenic | 35.0% |
| !! | ATTTAGAAGAGGAGTGTTGT+TGG | + | chr6.3:16796819-16796838 | None:intergenic | 35.0% |
| !! | CTTCATTTGCTATGTCACAA+TGG | + | chr6.3:16793317-16793336 | None:intergenic | 35.0% |
| !! | TTCAAAATGAGTGTCGCTTT+AGG | + | chr6.3:16795133-16795114 | None:intergenic | 35.0% |
| !!! | CACAAACTAGTTTTCACCAT+TGG | - | chr6.3:16796134-16796153 | MS.gene47141:intron | 35.0% |
| !!! | GACATTTTTTTGGTAGTGAC+CGG | - | chr6.3:16795858-16795877 | MS.gene47141:intron | 35.0% |
| AAACAAGAGATTGGAAGGAG+TGG | - | chr6.3:16794962-16794981 | MS.gene47141:intron | 40.0% | |
| AAATTCCTCACACTTCTAGG+TGG | - | chr6.3:16795441-16795460 | MS.gene47141:CDS | 40.0% | |
| AACAAGAAACCATCTCCATG+AGG | - | chr6.3:16796512-16796531 | MS.gene47141:intron | 40.0% | |
| AGTGTGCAACTTGCCAAATA+TGG | - | chr6.3:16794840-16794859 | MS.gene47141:intron | 40.0% | |
| CAATCAACGGTCAATGCTTA+TGG | - | chr6.3:16793357-16793376 | MS.gene47141:intron | 40.0% | |
| CATCTACTAACAACGGTCTT+AGG | - | chr6.3:16793124-16793143 | MS.gene47141:CDS | 40.0% | |
| CTTGGTAGACTTTCTATCTG+GGG | + | chr6.3:16796850-16796869 | None:intergenic | 40.0% | |
| GAAGAGACTCATTGATCGAA+TGG | - | chr6.3:16796265-16796284 | MS.gene47141:intron | 40.0% | |
| GTGTGCAACTTGCCAAATAT+GGG | - | chr6.3:16794841-16794860 | MS.gene47141:intron | 40.0% | |
| GTGTTTGCAGTTAACATTCG+AGG | - | chr6.3:16794657-16794676 | MS.gene47141:intron | 40.0% | |
| TGCTATGTCACAATGGATGA+AGG | + | chr6.3:16793310-16793329 | None:intergenic | 40.0% | |
| TTCACGTTTAGGGACCATAA+AGG | + | chr6.3:16796775-16796794 | None:intergenic | 40.0% | |
| TTGGTAGACTTTCTATCTGG+GGG | + | chr6.3:16796849-16796868 | None:intergenic | 40.0% | |
| TTGTTTGCGCATAACGAAAC+AGG | - | chr6.3:16796243-16796262 | MS.gene47141:intron | 40.0% | |
| !! | AATAATAGGGTTGATGCGCT+CGG | - | chr6.3:16794815-16794834 | MS.gene47141:intron | 40.0% |
| !! | GGGGGACTTTTATTTAGAAG+AGG | + | chr6.3:16796830-16796849 | None:intergenic | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr6.3:16795352-16795371 | MS.gene47141:CDS | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr6.3:16795371-16795352 | None:intergenic | 40.0% |
| AACAACGGTCTTAGGTTAGC+CGG | - | chr6.3:16793132-16793151 | MS.gene47141:CDS | 45.0% | |
| AACGGTCAATGCTTATGGAC+AGG | - | chr6.3:16793362-16793381 | MS.gene47141:intron | 45.0% | |
| AATCAAGTGGCTGCATCCAT+TGG | - | chr6.3:16793270-16793289 | MS.gene47141:intron | 45.0% | |
| ACGTTTAGGGACCATAAAGG+AGG | + | chr6.3:16796772-16796791 | None:intergenic | 45.0% | |
| ACTCGTGAGCTTAGCTCAAT+TGG | + | chr6.3:16795925-16795944 | None:intergenic | 45.0% | |
| ATTTGAACACGGCGTCTAGA+AGG | + | chr6.3:16796938-16796957 | None:intergenic | 45.0% | |
| GACATTGTGCGTGAAATACG+CGG | - | chr6.3:16794683-16794702 | MS.gene47141:intron | 45.0% | |
| GCTGACATTCAAGACGAGTT+GGG | - | chr6.3:16793246-16793265 | MS.gene47141:intron | 45.0% | |
| GTGAATTGTGTCTCGCCAAA+TGG | - | chr6.3:16794870-16794889 | MS.gene47141:intron | 45.0% | |
| GTGAGCTTAGCTCAATTGGT+TGG | + | chr6.3:16795921-16795940 | None:intergenic | 45.0% | |
| GTGGATGGCAGCTATGTTTA+TGG | - | chr6.3:16795068-16795087 | MS.gene47141:CDS | 45.0% | |
| TGCTGACATTCAAGACGAGT+TGG | - | chr6.3:16793245-16793264 | MS.gene47141:intron | 45.0% | |
| TGGTAGACTTTCTATCTGGG+GGG | + | chr6.3:16796848-16796867 | None:intergenic | 45.0% | |
| TTTAGGGACCATAAAGGAGG+AGG | + | chr6.3:16796769-16796788 | None:intergenic | 45.0% | |
| TTTGAACACGGCGTCTAGAA+GGG | + | chr6.3:16796937-16796956 | None:intergenic | 45.0% | |
| ! | ACTTCTAGGTGGAGTGTTAG+AGG | - | chr6.3:16795452-16795471 | MS.gene47141:CDS | 45.0% |
| ! | TGTTAGAGGTGTATGGAGTG+AGG | - | chr6.3:16795466-16795485 | MS.gene47141:CDS | 45.0% |
| !! | AGAAGAGGAGTGTTGTTGGT+TGG | + | chr6.3:16796815-16796834 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr6.3:16795351-16795370 | MS.gene47141:CDS | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr6.3:16795370-16795351 | None:intergenic | 45.0% |
| !!! | ATTTAATATAATTTTTTAAG+TGG | - | chr6.3:16795552-16795571 | MS.gene47141:intron | 5.0% |
| !!! | TTTAGATAAATTATTTTATT+TGG | + | chr6.3:16795778-16795797 | None:intergenic | 5.0% |
| AAGGTTCGGGGTTCAAACTC+CGG | + | chr6.3:16795880-16795899 | None:intergenic | 50.0% | |
| CAAGTGGTCCTCCTCCTTTA+TGG | - | chr6.3:16796758-16796777 | MS.gene47141:CDS | 50.0% | |
| TGTGTCGTGCATGTTGCCTT+TGG | - | chr6.3:16795729-16795748 | MS.gene47141:intron | 50.0% | |
| TTGAACACGGCGTCTAGAAG+GGG | + | chr6.3:16796936-16796955 | None:intergenic | 50.0% | |
| ! | ACACTCCACCTAGAAGTGTG+AGG | + | chr6.3:16795449-16795468 | None:intergenic | 50.0% |
| ! | AGACGAGTTGGGCAATCAAG+TGG | - | chr6.3:16793257-16793276 | MS.gene47141:intron | 50.0% |
| ! | GGCAGATGCTGTGTTGTTCT+TGG | - | chr6.3:16795004-16795023 | MS.gene47141:intron | 50.0% |
| ! | GGTGGAGTGTTAGAGGTGTA+TGG | - | chr6.3:16795459-16795478 | MS.gene47141:CDS | 50.0% |
| !! | AATGGATGAAGGTGCTCCTG+TGG | + | chr6.3:16793299-16793318 | None:intergenic | 50.0% |
| !! | CACTGGCATTGATCTTCGTG+TGG | - | chr6.3:16795049-16795068 | MS.gene47141:intron | 50.0% |
| !! | CAGTGGCATTGGCAAAGAGA+CGG | - | chr6.3:16793182-16793201 | MS.gene47141:intron | 50.0% |
| !! | GGCATTGATCTTCGTGTGGA+TGG | - | chr6.3:16795053-16795072 | MS.gene47141:intron | 50.0% |
| AAAGTAGCCATCGTCACCGG+AGG | - | chr6.3:16793156-16793175 | MS.gene47141:intron | 55.0% | |
| CAAGTGGCTGCATCCATTGG+CGG | - | chr6.3:16793273-16793292 | MS.gene47141:intron | 55.0% | |
| CACCATGCGTGCACCTTGAT+CGG | + | chr6.3:16793220-16793239 | None:intergenic | 55.0% | |
| CGTCTCTTTGCCAATGCCAC+TGG | + | chr6.3:16793184-16793203 | None:intergenic | 55.0% | |
| GCGCATCTCTTTGCCGATCA+AGG | - | chr6.3:16793204-16793223 | MS.gene47141:intron | 55.0% | |
| GGCAAAGTAGCCATCGTCAC+CGG | - | chr6.3:16793153-16793172 | MS.gene47141:intron | 55.0% | |
| TCAAGACACCTACGCTACCC+AGG | + | chr6.3:16794764-16794783 | None:intergenic | 55.0% | |
| TGGGTAGCGTAGGTGTCTTG+AGG | - | chr6.3:16794763-16794782 | MS.gene47141:intron | 55.0% | |
| ! | GGTGACGATGGCTACTTTGC+CGG | + | chr6.3:16793154-16793173 | None:intergenic | 55.0% |
| CGATCAAGGTGCACGCATGG+TGG | - | chr6.3:16793218-16793237 | MS.gene47141:intron | 60.0% | |
| GAAATACGCGGCGCGTGCAA+TGG | - | chr6.3:16794695-16794714 | MS.gene47141:intron | 60.0% | |
| GACACCTACGCTACCCAGGA+CGG | + | chr6.3:16794760-16794779 | None:intergenic | 60.0% | |
| TGCCGATCAAGGTGCACGCA+TGG | - | chr6.3:16793215-16793234 | MS.gene47141:intron | 60.0% | |
| ACTGGCACCTCCGGTGACGA+TGG | + | chr6.3:16793166-16793185 | None:intergenic | 65.0% | |
| ATACGCGGCGCGTGCAATGG+TGG | - | chr6.3:16794698-16794717 | MS.gene47141:intron | 65.0% | |
| CTGCATCCATTGGCGGCCAC+AGG | - | chr6.3:16793280-16793299 | MS.gene47141:intron | 65.0% | |
| GCCAATGCCACTGGCACCTC+CGG | + | chr6.3:16793175-16793194 | None:intergenic | 65.0% | |
| GTGTGCACAGCGTCCGTCCT+GGG | - | chr6.3:16794744-16794763 | MS.gene47141:intron | 65.0% | |
| TGTGTGCACAGCGTCCGTCC+TGG | - | chr6.3:16794743-16794762 | MS.gene47141:intron | 65.0% | |
| ! | AATGGTGGAGGGGCGCGTGA+GGG | - | chr6.3:16794713-16794732 | MS.gene47141:intron | 65.0% |
| !! | ACCGGAGGTGCCAGTGGCAT+TGG | - | chr6.3:16793171-16793190 | MS.gene47141:intron | 65.0% |
| !! | ATCGTCACCGGAGGTGCCAG+TGG | - | chr6.3:16793165-16793184 | MS.gene47141:intron | 65.0% |
| GCGTCCGTCCTGGGTAGCGT+AGG | - | chr6.3:16794753-16794772 | MS.gene47141:intron | 70.0% | |
| GGTGCTCCTGTGGCCGCCAA+TGG | + | chr6.3:16793289-16793308 | None:intergenic | 70.0% | |
| ! | ATGGTGGAGGGGCGCGTGAG+GGG | - | chr6.3:16794714-16794733 | MS.gene47141:intron | 70.0% |
| ! | CAATGGTGGAGGGGCGCGTG+AGG | - | chr6.3:16794712-16794731 | MS.gene47141:intron | 70.0% |
| ! | CGGCGCGTGCAATGGTGGAG+GGG | - | chr6.3:16794703-16794722 | MS.gene47141:intron | 70.0% |
| ! | GCGGCGCGTGCAATGGTGGA+GGG | - | chr6.3:16794702-16794721 | MS.gene47141:intron | 70.0% |
| CGCGGCGCGTGCAATGGTGG+AGG | - | chr6.3:16794701-16794720 | MS.gene47141:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 16793111 | 16796973 | 16793111 | ID=MS.gene47141 |
| chr6.3 | mRNA | 16793111 | 16796973 | 16793111 | ID=MS.gene47141.t1;Parent=MS.gene47141 |
| chr6.3 | exon | 16796701 | 16796973 | 16796701 | ID=MS.gene47141.t1.exon1;Parent=MS.gene47141.t1 |
| chr6.3 | CDS | 16796701 | 16796973 | 16796701 | ID=cds.MS.gene47141.t1;Parent=MS.gene47141.t1 |
| chr6.3 | exon | 16795059 | 16795511 | 16795059 | ID=MS.gene47141.t1.exon2;Parent=MS.gene47141.t1 |
| chr6.3 | CDS | 16795059 | 16795511 | 16795059 | ID=cds.MS.gene47141.t1;Parent=MS.gene47141.t1 |
| chr6.3 | exon | 16793111 | 16793152 | 16793111 | ID=MS.gene47141.t1.exon3;Parent=MS.gene47141.t1 |
| chr6.3 | CDS | 16793111 | 16793152 | 16793111 | ID=cds.MS.gene47141.t1;Parent=MS.gene47141.t1 |
| Gene Sequence |
| Protein sequence |
