AlfalfaGEDB | MS.gene47141

M. sativa cultivar XinJiangDaYe / MS.gene47141

KEGG: -
GO: GO:0003674 GO:0003824 GO:0016491
PFAM: PF13561.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47141.t1	XP_003618833.1	95.5	242	11	0	1	242	1	242	1.90E-121	445.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47141.t1	Q5C9I9	55.8	231	102	0	12	242	6	236	5.1e-62	239.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47141.t1	G7KNM8	95.5	242	11	0	1	242	1	242	1.4e-121	445.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050584	MS.gene47141	0.811943	5.44E-51	-1.69E-46
MS.gene051789	MS.gene47141	0.808094	3.67E-50	-1.69E-46
MS.gene053074	MS.gene47141	0.831311	1.79E-55	-1.69E-46
MS.gene054596	MS.gene47141	0.814461	1.52E-51	-1.69E-46
MS.gene058168	MS.gene47141	0.800458	1.43E-48	-1.69E-46
MS.gene059006	MS.gene47141	0.843931	1.03E-58	-1.69E-46
MS.gene059124	MS.gene47141	0.818412	1.99E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47141.t1	MTR_6g023610	95.455	242	11	0	1	242	1	242	1.47e-170	471
MS.gene47141.t1	MTR_6g023910	79.268	246	51	0	1	246	1	246	2.51e-145	407
MS.gene47141.t1	MTR_6g023590	72.314	242	67	0	1	242	1	242	6.74e-128	363
MS.gene47141.t1	MTR_6g023990	71.605	243	68	1	1	242	1	243	8.44e-126	358
MS.gene47141.t1	MTR_6g023600	73.140	242	65	0	1	242	1	242	1.17e-123	352
MS.gene47141.t1	MTR_6g023950	71.951	246	69	0	1	246	1	246	1.21e-121	347
MS.gene47141.t1	MTR_6g023600	71.488	242	63	1	1	242	1	236	1.98e-117	336
MS.gene47141.t1	MTR_7g110130	51.515	231	111	1	12	242	5	234	1.46e-76	233
MS.gene47141.t1	MTR_2g090165	51.082	231	111	2	12	242	5	233	5.47e-73	224
MS.gene47141.t1	MTR_7g110140	48.163	245	124	3	11	255	4	245	1.40e-70	218

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47141.t1	AT2G47140	49.573	234	116	2	9	242	2	233	6.39e-75	228
MS.gene47141.t1	AT3G29260	49.798	247	120	4	9	255	2	244	1.88e-70	217
MS.gene47141.t1	AT2G47130	48.945	237	112	4	9	242	2	232	2.32e-70	217
MS.gene47141.t1	AT2G47120	47.436	234	119	4	9	242	2	231	1.75e-68	212
MS.gene47141.t1	AT3G29250	46.559	247	129	3	9	255	2	245	2.39e-68	212
MS.gene47141.t1	AT3G29250	46.586	249	130	3	7	255	36	281	3.60e-68	213
MS.gene47141.t1	AT2G47120	47.186	231	118	4	12	242	6	232	7.65e-67	208
MS.gene47141.t1	AT3G29250	45.850	253	132	4	5	255	34	283	3.21e-66	207
MS.gene47141.t1	AT3G51680	41.729	266	133	5	1	248	20	281	3.94e-57	184
MS.gene47141.t1	AT3G26760	41.004	239	130	6	12	242	35	270	8.25e-53	173

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Find 72 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGAGATTGGAAGGAG+TGG	0.601180	6.3:-16795100	MS.gene47141:CDS
AAAGTAGCCATCGTCACCGG+AGG	0.651370	6.3:-16796906	MS.gene47141:CDS
AACAACGGTCTTAGGTTAGC+CGG	0.520911	6.3:-16796930	MS.gene47141:CDS
AACGGTCAATGCTTATGGAC+AGG	0.524985	6.3:-16796700	MS.gene47141:intron
AACTTGCCAAATATGGGATA+AGG	0.435956	6.3:-16795215	MS.gene47141:CDS
AATAATAGGGTTGATGCGCT+CGG	0.618943	6.3:-16795247	MS.gene47141:CDS
AATCAAGTGGCTGCATCCAT+TGG	0.471481	6.3:-16796792	MS.gene47141:CDS
AATGGATGAAGGTGCTCCTG+TGG	0.649213	6.3:+16796766	None:intergenic
AATGGTGGAGGGGCGCGTGA+GGG	0.448062	6.3:-16795349	MS.gene47141:CDS
AATGGTGTTGCTAATCCATT+TGG	0.430166	6.3:+16795177	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAATTCCTCACACTTCT+AGG	-	chr6.3:16795438-16795457	MS.gene47141:CDS	30.0%
AAACAAATTTGGATCGAGTA+AGG	-	chr6.3:16793933-16793952	MS.gene47141:intron	30.0%
AACATAATATCTACCTGTTG+TGG	+	chr6.3:16794567-16794586	None:intergenic	30.0%
AACGTTATTAAAAGGTCCTT+CGG	+	chr6.3:16793860-16793879	None:intergenic	30.0%
AACTACATCTACAATACAAG+TGG	-	chr6.3:16796742-16796761	MS.gene47141:CDS	30.0%
AAGTAAGGACTAAACTTACA+AGG	-	chr6.3:16794009-16794028	MS.gene47141:intron	30.0%
AAGTAAGGACTAAACTTAGA+AGG	+	chr6.3:16793566-16793585	None:intergenic	30.0%
ATATCGAAGCATGCAATAAT+AGG	-	chr6.3:16794801-16794820	MS.gene47141:intron	30.0%
ATGTCTTACTTCTTAGTGTA+CGG	+	chr6.3:16796440-16796459	None:intergenic	30.0%
ATTGACTATGAGATTGTTAG+GGG	-	chr6.3:16794905-16794924	MS.gene47141:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.3	gene	16793111	16796973	16793111	ID=MS.gene47141
chr6.3	mRNA	16793111	16796973	16793111	ID=MS.gene47141.t1;Parent=MS.gene47141
chr6.3	exon	16796701	16796973	16796701	ID=MS.gene47141.t1.exon1;Parent=MS.gene47141.t1
chr6.3	CDS	16796701	16796973	16796701	ID=cds.MS.gene47141.t1;Parent=MS.gene47141.t1
chr6.3	exon	16795059	16795511	16795059	ID=MS.gene47141.t1.exon2;Parent=MS.gene47141.t1
chr6.3	CDS	16795059	16795511	16795059	ID=cds.MS.gene47141.t1;Parent=MS.gene47141.t1
chr6.3	exon	16793111	16793152	16793111	ID=MS.gene47141.t1.exon3;Parent=MS.gene47141.t1
chr6.3	CDS	16793111	16793152	16793111	ID=cds.MS.gene47141.t1;Parent=MS.gene47141.t1

Gene Sequence

>MS.gene47141

ATGGCAGAAGCTTCATCTACTAACAACGGTCTTAGGTTAGCCGGCAAAGTAGCCATCGTCACCGGAGGTGCCAGTGGCATTGGCAAAGAGACGGCGCATCTCTTTGCCGATCAAGGTGCACGCATGGTGGTGATTGCTGACATTCAAGACGAGTTGGGCAATCAAGTGGCTGCATCCATTGGCGGCCACAGGAGCACCTTCATCCATTGTGACATAGCAAATGAAGATCAAGTAAAAAATCTCATTCAATCAACGGTCAATGCTTATGGACAGGTAAAAATTAACTAGGGTTAAATATATGTTTTGTTCCTACGTGTATTATGAAATTTTGTCTTTAGTCTCTATGAGAAAAAAATAGCACTTATACAAATGTCTTACGTTGTTATGTTAATGTTGTTTTAACATGTTTAAATTTTGGGTTAAATAAGTTTTTGGTCCCTATAAAATTGCGACCTTCTAAGTTTAGTCCTTACTTAATTTTAATAGCATTTTTAATCCCTACAAAAAAAAAATTACTTATAATTTTAGTCCCTGCTAAAATAAATTTTGTTTAATTATCCTTAAACTCTTAAATTTTTTAACGATTCTTTTTATACAATTTTAGAACACTATGAAAGGTTCATTTACTAAAATCTATAATTTTTTAACATGAAATAAATTAAATATGATTTTTTTAAAACGACAAAAGTTTAAGATATAAGTAACAAAAATATGAATGTAGAAATCAAATTTTTGCGATATTTTTTCCGAAGGACCTTTTAATAACGTTCTTAACACGCCTGTAAAAAATTGTTGAAAAACTTAAGAGTTTAAGCATAAATTAAACAAATTTGGATCGAGTAAGGACTAATATTGAGTGCAGAATATTTTTGTAGGGATTAAAAAAGCTATTAAAATTAAGTAAGGACTAAACTTACAAGGTTGCAATTTTGTAGGGACCAAAAACATAATTAACCCTTAAATTTTTCATTCCCCAAAAAACTTCAAATTCTTCAATTATTTTTTTACAGCTATGTATATTTAGCACATTATAAAAAGTTCATGAACAAAAATTTAAATTTTTTAACATGAGATGAATCAAATATAAATTATTTCAACTTCAAAAGTTTAAGATAAAAGTAACCATAATTTCTACATTATAATGTGCTAAACACGCATACAAATAAGCACTAAAAAATTTAAATAAACTTACCAGCAGAGACTAATTAAAGTTACTGATAGTATAATTTTGTAGGAACTAAAAGTTGACAAAAAAATATAGAGAAAATAAAAAATAAAATAAAATTTTTTTATAGGGTGTAAAAACACATCTAACCCCGTTTACTATATAAGACTTTATTTATAGTTTACATTATCATGATTTTTCTAATGTAAAACAATGTAAAGATAAATATATGATTAAAATCAATAACTTTTTCTTTCTTTTCCTAAAAAACAACTTTTTCTTTCTTTTCCACAACAGGTAGATATTATGTTTAGCAATGCTGGGATTGCAAGTCCATCTGATCAGACTATTTTGGAACTCGACATTTCTCAAGCTGACCATGTGTTTGCAGTTAACATTCGAGGAACGACATTGTGCGTGAAATACGCGGCGCGTGCAATGGTGGAGGGGCGCGTGAGGGGTAGCATTGTGTGCACAGCGTCCGTCCTGGGTAGCGTAGGTGTCTTGAGGTTAACAGATTACACAATATCGAAGCATGCAATAATAGGGTTGATGCGCTCGGCGAGTGTGCAACTTGCCAAATATGGGATAAGGGTGAATTGTGTCTCGCCAAATGGATTAGCAACACCATTGACTATGAGATTGTTAGGGGCGAGTGCTAAGACAGTCGAGCTGATTTATGAACAAAACAAGAGATTGGAAGGAGTGGTTCTTAACACTAAACATGTGGCAGATGCTGTGTTGTTCTTGGTATCTAATGAATCTGACTTTGTCACTGGCATTGATCTTCGTGTGGATGGCAGCTATGTTTATGGCAAATATGAACTACTCCCTCCGTTTCAAAATGAGTGTCGCTTTAGCCAAAAAAAATTGTTTCAAAATGAGTGTCGCTTTCAGTTTCCAATGCAATAATAACTTTTTCTTTTCAATTGTACCCTCCAATTAATATTCTGCACACTACTTCCAAAGTATTACTTTTAAAACTAACCAATAGTTAATAAGGATAATTTGGTAAAATAACCATTCTCTTTCTCTTAATCATTGCATTTCTTAATATGTGTGTAAACACCTAAAGCGACACTCATTTTGAAACGGAGGGAGTATTATAAATAAATAAATAAATAAAAATGTTTGTACTTATATTGAATTTATTTGAAGGATAAAAAAATTCCTCACACTTCTAGGTGGAGTGTTAGAGGTGTATGGAGTGAGGTATATAAAATAAATGTAATAAATAAATAAAAATTAAACTATATCATGGGCTTTGGACCCATTTATTTAATATAATTTTTTAAGTGGAGTTTGAGACAAGTGAAAAGATATTGTGCTTTCATAGCTACTTTTTCTATAATCACCTGTATTTCTCACTCTACAATGAAGGTGTTTATATTAGTTGATAAGTAGAAGAAACAACCATCATCTAAATAGTTGTAAGACTGAATTAAAATTAAAATGTGTCGTGCATGTTGCCTTTGGTTCATTATAAGTATAAATTGATTCCAAATAAAATAATTTATCTAAAATTGAATTGAATTTAAAGTTATTTATGTGATTTATGTATGACATTATGTGATTTATGTATGACATTTTTTTGGTAGTGACCGGAGTTTGAACCCCGAACCTTGCATATTTTATGCATTGTCCAACCAATTGAGCTAAGCTCACGAGTACATTTATGTATGACATTTAAATTCATTCAATGTGAGTTTAATTGTTTAATTTTTAATTCAAAAGGTGAGATAAATCTTGCATTATGCACAAGGTTGTTTCTACTATTTGATAAATAAATATCACCATTAAATTAAATAAATGTCAATTATGTTATTTGATGCACAAACGAGACAAATATTACATCTTACACAAACTAGTTTTCACCATTGGATCAATAAATCTCACGATTAAATTAATATGATGTGAGTTATTGATCTAGTGGTAAACAAGACACTTATGTATGGCGTGAGACCATTTTGTTTGCGCATAACGAAACAGGAAGAGACTCATTGATCGAATGGTGAAAAATTAATTTATGCATTCTGAAAAATTAAAAGATGTAGTTTTTTTAACATCAAATTTATTATTAAGAAGAAAAGTACAAATAGTATTAAACTCATAACTCAGAAAAAGTACAAGTAGTACTCAGCCTACTTTAAATAAACAAACACCGTACACTAAGAAGTAAGACATATAAGAGGGTTCAAATATCATTCAAAATACAAACAAGATCCTCCTTTTTCTTAACAAGAAACCATCTCCATGAGGTTTATTTTGACAATTTCCACAATCTCTTCTACTTCACATTTCCTAAATTTTTTAGATTGTTGCATGTCAAATAAATGTTAAGCTTTTCTGATACTTCTTAGTCAGAGAAGAGGGATAAAAAATAATCTATGAGAGAAACCACATTTTTGGATATGATTAGCCTTGTTCAAACACACTTACAAATCGAATACTAAATCTTACCGACAAAACTACATCTACAATACAAGTGGTCCTCCTCCTTTATGGTCCCTAAACGTGAAACACATTCAAACTAGATCCAACCAACAACACTCCTCTTCTAAATAAAAGTCCCCCCAGATAGAAAGTCTACCAAGAATTAATGCCAAAAGAAAATTTAAACCCTTTGTAGAATCAAACTATTTCAATTATTCTTTAGACCCCTTCTAGACGCCGTGTTCAAATCAAAGATAAGAATTAA

Protein sequence

>MS.gene47141.t1

MAEASSTNNGLRLAGKVAIVTGGASGIGKETAHLFADQGARMVVIADIQDELGNQVAASIGGHRSTFIHCDIANEDQVKNLIQSTVNAYGQVDIMFSNAGIASPSDQTILELDISQADHVFAVNIRGTTLCVKYAARAMVEGRVRGSIVCTASVLGSVGVLRLTDYTISKHAIIGLMRSASVQLAKYGIRVNCVSPNGLATPLTMRLLGASAKTVELIYEQNKRLEGVVLNTKHVADAVLFLTPSRRRVQIKDKN