Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47343.t1 | XP_013468053.1 | 99.4 | 358 | 2 | 0 | 1 | 358 | 1 | 358 | 2.00E-201 | 711.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47343.t1 | Q9SJQ9 | 86.9 | 358 | 47 | 0 | 1 | 358 | 1 | 358 | 7.9e-178 | 624.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47343.t1 | A0A072VVG3 | 99.4 | 358 | 2 | 0 | 1 | 358 | 1 | 358 | 1.5e-201 | 711.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053971 | MS.gene47343 | -0.818305 | 2.10E-52 | -1.69E-46 |
| MS.gene055370 | MS.gene47343 | -0.803916 | 2.77E-49 | -1.69E-46 |
| MS.gene055601 | MS.gene47343 | 0.822214 | 2.67E-53 | -1.69E-46 |
| MS.gene056633 | MS.gene47343 | -0.842766 | 2.12E-58 | -1.69E-46 |
| MS.gene056899 | MS.gene47343 | 0.809448 | 1.88E-50 | -1.69E-46 |
| MS.gene058746 | MS.gene47343 | -0.82001 | 8.60E-53 | -1.69E-46 |
| MS.gene060087 | MS.gene47343 | 0.800449 | 1.43E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47343.t1 | MTR_1g061050 | 99.441 | 358 | 2 | 0 | 1 | 358 | 1 | 358 | 0.0 | 731 |
| MS.gene47343.t1 | MTR_5g069055 | 86.034 | 358 | 50 | 0 | 1 | 358 | 1 | 358 | 0.0 | 637 |
| MS.gene47343.t1 | MTR_5g069050 | 79.609 | 358 | 58 | 1 | 1 | 358 | 42 | 384 | 0.0 | 576 |
| MS.gene47343.t1 | MTR_5g096670 | 75.698 | 358 | 86 | 1 | 1 | 358 | 1 | 357 | 0.0 | 556 |
| MS.gene47343.t1 | MTR_4g057670 | 55.398 | 352 | 152 | 4 | 8 | 358 | 53 | 400 | 9.28e-131 | 380 |
| MS.gene47343.t1 | MTR_4g071860 | 55.398 | 352 | 152 | 4 | 8 | 358 | 53 | 400 | 1.13e-130 | 379 |
| MS.gene47343.t1 | MTR_1g109200 | 52.809 | 356 | 163 | 4 | 4 | 358 | 40 | 391 | 4.36e-128 | 373 |
| MS.gene47343.t1 | MTR_4g071880 | 49.577 | 355 | 156 | 6 | 8 | 358 | 51 | 386 | 5.52e-109 | 324 |
| MS.gene47343.t1 | MTR_7g103920 | 69.474 | 95 | 4 | 1 | 112 | 206 | 11 | 80 | 1.45e-36 | 127 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47343.t1 | AT2G36460 | 86.872 | 358 | 47 | 0 | 1 | 358 | 1 | 358 | 0.0 | 645 |
| MS.gene47343.t1 | AT3G52930 | 86.313 | 358 | 49 | 0 | 1 | 358 | 1 | 358 | 0.0 | 638 |
| MS.gene47343.t1 | AT5G03690 | 86.072 | 359 | 49 | 1 | 1 | 358 | 1 | 359 | 0.0 | 612 |
| MS.gene47343.t1 | AT5G03690 | 86.533 | 349 | 46 | 1 | 11 | 358 | 45 | 393 | 0.0 | 598 |
| MS.gene47343.t1 | AT4G26530 | 77.654 | 358 | 80 | 0 | 1 | 358 | 1 | 358 | 0.0 | 572 |
| MS.gene47343.t1 | AT4G26530 | 77.654 | 358 | 80 | 0 | 1 | 358 | 1 | 358 | 0.0 | 572 |
| MS.gene47343.t1 | AT4G26530 | 77.654 | 358 | 80 | 0 | 1 | 358 | 1 | 358 | 0.0 | 572 |
| MS.gene47343.t1 | AT4G26520 | 72.905 | 358 | 97 | 0 | 1 | 358 | 1 | 358 | 0.0 | 531 |
| MS.gene47343.t1 | AT4G26520 | 73.034 | 356 | 96 | 0 | 1 | 356 | 1 | 356 | 0.0 | 528 |
| MS.gene47343.t1 | AT4G26520 | 72.779 | 349 | 95 | 0 | 10 | 358 | 7 | 355 | 0.0 | 516 |
| MS.gene47343.t1 | AT4G26520 | 72.779 | 349 | 95 | 0 | 10 | 358 | 7 | 355 | 0.0 | 516 |
| MS.gene47343.t1 | AT2G36460 | 87.640 | 267 | 33 | 0 | 92 | 358 | 1 | 267 | 5.33e-175 | 487 |
| MS.gene47343.t1 | AT2G36460 | 87.640 | 267 | 33 | 0 | 92 | 358 | 1 | 267 | 5.33e-175 | 487 |
| MS.gene47343.t1 | AT5G03690 | 87.266 | 267 | 33 | 1 | 93 | 358 | 1 | 267 | 4.01e-163 | 457 |
| MS.gene47343.t1 | AT5G03690 | 87.266 | 267 | 33 | 1 | 93 | 358 | 1 | 267 | 4.01e-163 | 457 |
| MS.gene47343.t1 | AT4G38970 | 55.367 | 354 | 153 | 4 | 6 | 358 | 49 | 398 | 4.79e-132 | 383 |
| MS.gene47343.t1 | AT2G21330 | 54.237 | 354 | 157 | 4 | 6 | 358 | 50 | 399 | 5.42e-129 | 375 |
| MS.gene47343.t1 | AT2G01140 | 54.830 | 352 | 154 | 4 | 8 | 358 | 44 | 391 | 2.18e-128 | 374 |
| MS.gene47343.t1 | AT2G21330 | 52.260 | 354 | 154 | 5 | 6 | 358 | 50 | 389 | 7.21e-120 | 352 |
| MS.gene47343.t1 | AT4G38970 | 55.598 | 259 | 113 | 2 | 6 | 263 | 49 | 306 | 7.61e-94 | 285 |
| MS.gene47343.t1 | AT2G21330 | 53.668 | 259 | 118 | 2 | 6 | 263 | 50 | 307 | 1.45e-91 | 277 |
Find 96 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGCCAATGCTGCTTATAT+TGG | 0.273936 | 1.1:-46407982 | MS.gene47343:CDS |
| TGGACTCTTACATTCTCTTA+TGG | 0.280031 | 1.1:-46406542 | MS.gene47343:CDS |
| AGCAATGCAGCTTGAGCTTT+AGG | 0.286122 | 1.1:+46406464 | None:intergenic |
| CTCAAGCTGCATTGCTTGTT+AGG | 0.288958 | 1.1:-46406457 | MS.gene47343:CDS |
| GATCCTGGTGTAACCATATT+AGG | 0.309736 | 1.1:+46406734 | None:intergenic |
| GAAGAAAGCTGGAGTTCTTC+CGG | 0.325790 | 1.1:-46407131 | MS.gene47343:CDS |
| GACAAGGGAGATGGTTCATT+TGG | 0.333091 | 1.1:+46406959 | None:intergenic |
| AGCAGCAAGGATACCCTTTC+CGG | 0.352251 | 1.1:+46407954 | None:intergenic |
| ATAACCTCAGGAGCAACTTT+AGG | 0.366412 | 1.1:+46406704 | None:intergenic |
| TAATGCAATGAACAAACTTA+AGG | 0.371253 | 1.1:-46406576 | MS.gene47343:CDS |
| TAAGTTTGTTCATTGCATTA+AGG | 0.377716 | 1.1:+46406579 | None:intergenic |
| CCGGTGCAAGGTTCGCTAAA+TGG | 0.381985 | 1.1:-46407003 | MS.gene47343:CDS |
| TTCAGAGTCTCTTCATGTTA+AGG | 0.387381 | 1.1:-46406369 | MS.gene47343:CDS |
| GTTGAACTTGCCGGCACAAA+TGG | 0.411220 | 1.1:-46407085 | MS.gene47343:CDS |
| GATGAATCTACTGGCACAAT+TGG | 0.412825 | 1.1:-46407931 | MS.gene47343:CDS |
| GAACTCTTGTTCACTGCCCC+TGG | 0.414062 | 1.1:-46407850 | MS.gene47343:CDS |
| AAGAAAGCTGGAGTTCTTCC+GGG | 0.415915 | 1.1:-46407130 | MS.gene47343:CDS |
| AATGCAATGAACAAACTTAA+GGG | 0.427010 | 1.1:-46406575 | MS.gene47343:CDS |
| GACCATCATGTTCTTCTTGA+AGG | 0.430660 | 1.1:-46406770 | MS.gene47343:CDS |
| AGAATCTCAGGCTCTACAAT+TGG | 0.433301 | 1.1:+46406872 | None:intergenic |
| CAAAGCTCGGACTGTGTGTT+GGG | 0.435174 | 1.1:+46406679 | None:intergenic |
| AAGGGAACCGTTGAACTTGC+CGG | 0.435648 | 1.1:-46407094 | MS.gene47343:CDS |
| GCAGCAAGGATACCCTTTCC+GGG | 0.463973 | 1.1:+46407955 | None:intergenic |
| CCCTTGTCAACCTTGATACC+CGG | 0.464933 | 1.1:+46407112 | None:intergenic |
| GCTGCTTATATTGGCTCTCC+CGG | 0.465324 | 1.1:-46407973 | MS.gene47343:CDS |
| AGAAACCACAACTCAAGGTT+TGG | 0.472063 | 1.1:-46407062 | MS.gene47343:CDS |
| AACTTAAGGGAAAGAAGCCT+TGG | 0.474897 | 1.1:-46406562 | MS.gene47343:CDS |
| TGGAGTTCTTCCGGGTATCA+AGG | 0.478690 | 1.1:-46407122 | MS.gene47343:CDS |
| CGTTCTTGCAACATGTTACA+AGG | 0.482121 | 1.1:-46406801 | MS.gene47343:CDS |
| GATCCATCCACTAGAATCTC+AGG | 0.488146 | 1.1:+46406860 | None:intergenic |
| GCCGTCATATGCCAAGAGAA+TGG | 0.489726 | 1.1:-46406902 | MS.gene47343:CDS |
| CCAGACAAGAAAACTATAGC+TGG | 0.490239 | 1.1:+46406632 | None:intergenic |
| TTGGAACCAAACCATTCTCT+TGG | 0.499681 | 1.1:+46406891 | None:intergenic |
| AGCTGGAACTGCGGCAGGAA+CGG | 0.501285 | 1.1:+46406649 | None:intergenic |
| ACTTCAGCAAAGTACTCTTA+AGG | 0.501897 | 1.1:-46406513 | MS.gene47343:CDS |
| TATATTGGCTCTCCCGGAAA+GGG | 0.502381 | 1.1:-46407967 | MS.gene47343:CDS |
| TTCTTCAACACATCCACAAA+GGG | 0.502730 | 1.1:+46407148 | None:intergenic |
| ACTATAGCTGGAACTGCGGC+AGG | 0.507134 | 1.1:+46406644 | None:intergenic |
| GCAAAGTACTCTTAAGGCAT+GGG | 0.512733 | 1.1:-46406507 | MS.gene47343:CDS |
| GTGTGTTGGGCTATAACCTC+AGG | 0.515555 | 1.1:+46406692 | None:intergenic |
| CTTGCTGCTGATGAATCTAC+TGG | 0.520412 | 1.1:-46407940 | MS.gene47343:CDS |
| TCGTGGATTGACAAGGGAGA+TGG | 0.521733 | 1.1:+46406950 | None:intergenic |
| ACAAAGCTCGGACTGTGTGT+TGG | 0.522609 | 1.1:+46406678 | None:intergenic |
| CTCTTACATTCTCTTATGGA+AGG | 0.525023 | 1.1:-46406538 | MS.gene47343:CDS |
| GTGGATGTGTTGAAGAAAGC+TGG | 0.525235 | 1.1:-46407142 | MS.gene47343:CDS |
| TGTGGTTTCTCCATTTGTGC+CGG | 0.528303 | 1.1:+46407075 | None:intergenic |
| CTGAGGCAGTCTAAACAACC+AGG | 0.529230 | 1.1:+46407832 | None:intergenic |
| AGCAAAGTACTCTTAAGGCA+TGG | 0.530894 | 1.1:-46406508 | MS.gene47343:CDS |
| TAAGAGAATGTAAGAGTCCA+AGG | 0.537565 | 1.1:+46406545 | None:intergenic |
| CTCTCCTAAAGTTGCTCCTG+AGG | 0.537898 | 1.1:-46406708 | MS.gene47343:CDS |
| GCAACTCTAGGAACTTATCA+AGG | 0.543212 | 1.1:-46406416 | MS.gene47343:CDS |
| TCAATCCACGAAAACGCCTA+CGG | 0.549910 | 1.1:-46406938 | MS.gene47343:CDS |
| ACTTTAGGAGAGTCTGATCC+TGG | 0.549951 | 1.1:+46406719 | None:intergenic |
| ATTTGTGCCGGCAAGTTCAA+CGG | 0.550481 | 1.1:+46407087 | None:intergenic |
| TTATATTGGCTCTCCCGGAA+AGG | 0.551511 | 1.1:-46407968 | MS.gene47343:CDS |
| AGAGCCAATATAAGCAGCAT+TGG | 0.554374 | 1.1:+46407978 | None:intergenic |
| ACCATTCTCTTGGCATATGA+CGG | 0.555382 | 1.1:+46406901 | None:intergenic |
| GAGCCTGAGATTCTAGTGGA+TGG | 0.555574 | 1.1:-46406863 | MS.gene47343:CDS |
| CCATTTAGCGAACCTTGCAC+CGG | 0.555662 | 1.1:+46407003 | None:intergenic |
| TGCAAGAAGTACTATGAAGC+CGG | 0.557100 | 1.1:-46407022 | MS.gene47343:CDS |
| TCTTTCAAGAGCAAATATGA+AGG | 0.558115 | 1.1:-46409261 | MS.gene47343:intron |
| GAACGGTTCGCAACAAAGCT+CGG | 0.563519 | 1.1:+46406666 | None:intergenic |
| GCAAATTCAGAAGCAACTCT+AGG | 0.563691 | 1.1:-46406428 | MS.gene47343:CDS |
| GTGTATAGGAGTACCCTTTG+TGG | 0.565160 | 1.1:-46407161 | MS.gene47343:intron |
| TATCAAGGTAATGCTAACCT+TGG | 0.568421 | 1.1:-46406401 | MS.gene47343:CDS |
| TGGCGTGCCGTGCTAAAGAT+CGG | 0.577059 | 1.1:-46406983 | MS.gene47343:CDS |
| AATGGAGAAACCACAACTCA+AGG | 0.579845 | 1.1:-46407067 | MS.gene47343:CDS |
| CATATGCCAAGAGAATGGTT+TGG | 0.584136 | 1.1:-46406897 | MS.gene47343:CDS |
| GTCATCCAAACCTTGAGTTG+TGG | 0.586628 | 1.1:+46407057 | None:intergenic |
| AGTACTATGAAGCCGGTGCA+AGG | 0.593122 | 1.1:-46407015 | MS.gene47343:CDS |
| ACTCAAGGTTTGGATGACCT+TGG | 0.593476 | 1.1:-46407052 | MS.gene47343:CDS |
| TTCGCGAAGAGTACGTCTGT+TGG | 0.596179 | 1.1:+46407870 | None:intergenic |
| ACTTCTTGCACCTCTGACCA+AGG | 0.600417 | 1.1:+46407035 | None:intergenic |
| TCCGGGTATCAAGGTTGACA+AGG | 0.600493 | 1.1:-46407113 | MS.gene47343:CDS |
| GTTTGGATGACCTTGGTCAG+AGG | 0.601427 | 1.1:-46407045 | MS.gene47343:CDS |
| AGAATCCATACTACCTGCAG+CGG | 0.606136 | 1.1:+46407771 | None:intergenic |
| AAGCCTAATATGGTTACACC+AGG | 0.609198 | 1.1:-46406737 | MS.gene47343:CDS |
| TCTTACATTCTCTTATGGAA+GGG | 0.615325 | 1.1:-46406537 | MS.gene47343:CDS |
| ATTTGGACCGATCTTTAGCA+CGG | 0.615328 | 1.1:+46406976 | None:intergenic |
| TGTAGAGCCTGAGATTCTAG+TGG | 0.617102 | 1.1:-46406867 | MS.gene47343:CDS |
| CAGTAGATTCATCAGCAGCA+AGG | 0.619396 | 1.1:+46407941 | None:intergenic |
| TTTCTTCAACACATCCACAA+AGG | 0.625245 | 1.1:+46407147 | None:intergenic |
| GTCTGGTGGACAAAGTGAAG+AGG | 0.625664 | 1.1:-46406615 | MS.gene47343:CDS |
| AGTACTCTTAAGGCATGGGG+TGG | 0.629413 | 1.1:-46406503 | MS.gene47343:CDS |
| GAAAACTATAGCTGGAACTG+CGG | 0.632802 | 1.1:+46406640 | None:intergenic |
| GGTTGTTTAGACTGCCTCAG+TGG | 0.642712 | 1.1:-46407829 | MS.gene47343:CDS |
| TACCTTCAAGAAGAACATGA+TGG | 0.642921 | 1.1:+46406768 | None:intergenic |
| CAAAGTACTCTTAAGGCATG+GGG | 0.654273 | 1.1:-46406506 | MS.gene47343:CDS |
| GGTAATGCTAACCTTGGTGA+TGG | 0.655737 | 1.1:-46406395 | MS.gene47343:CDS |
| CCGGGTATCAAGGTTGACAA+GGG | 0.663397 | 1.1:-46407112 | MS.gene47343:CDS |
| TGAGGCAGTCTAAACAACCA+GGG | 0.687038 | 1.1:+46407833 | None:intergenic |
| GCGATTCGCTAGCATCAATG+TGG | 0.695493 | 1.1:-46407905 | MS.gene47343:CDS |
| GAGGCAGTCTAAACAACCAG+GGG | 0.707381 | 1.1:+46407834 | None:intergenic |
| ACTCTGAAGCACCATCACCA+AGG | 0.713624 | 1.1:+46406384 | None:intergenic |
| GGCATAACGAGCTAAACCGT+AGG | 0.727129 | 1.1:+46406922 | None:intergenic |
| CGAACAAGATAACACCACTG+AGG | 0.795503 | 1.1:+46407815 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATACATAAAAATCAAA+AGG | + | chr1.1:46406843-46406862 | None:intergenic | 10.0% |
| !! | TTAAATAAGTAAATCCAAAA+AGG | + | chr1.1:46408015-46408034 | None:intergenic | 15.0% |
| !!! | ACTTATTTAAAGTAATCTAT+TGG | - | chr1.1:46408025-46408044 | MS.gene47343:intron | 15.0% |
| !!! | ATCTTCTTTATGAAATATTT+TGG | - | chr1.1:46407489-46407508 | MS.gene47343:intron | 15.0% |
| !!! | TATCAGATTAAATTTTCATA+TGG | + | chr1.1:46407239-46407258 | None:intergenic | 15.0% |
| !!! | TTTTAATCTTTCATAGATAT+CGG | - | chr1.1:46407981-46408000 | MS.gene47343:CDS | 15.0% |
| !!! | TTTTTTTCTTTTCGTTTTAT+AGG | - | chr1.1:46406424-46406443 | MS.gene47343:CDS | 15.0% |
| !! | AATAAACTTAAAACAGCTTA+AGG | + | chr1.1:46408097-46408116 | None:intergenic | 20.0% |
| !!! | AAATTTTGAAAGAAAAGACA+TGG | + | chr1.1:46408279-46408298 | None:intergenic | 20.0% |
| !!! | AAGTGAAAGAAATGATATTT+TGG | - | chr1.1:46406789-46406808 | MS.gene47343:CDS | 20.0% |
| !!! | AATGTTTATTTTGAATTAGC+AGG | - | chr1.1:46407928-46407947 | MS.gene47343:CDS | 20.0% |
| !!! | TACTTTGTTTGACAAAATTA+CGG | - | chr1.1:46407063-46407082 | MS.gene47343:CDS | 20.0% |
| !!! | TTCTAAAAGTAGTAAAAAAG+AGG | - | chr1.1:46406745-46406764 | MS.gene47343:CDS | 20.0% |
| ! | AATGCAATGAACAAACTTAA+GGG | - | chr1.1:46409047-46409066 | MS.gene47343:intron | 25.0% |
| ! | AATTAAGATGTTTGACTCTT+TGG | + | chr1.1:46407297-46407316 | None:intergenic | 25.0% |
| ! | AGTAGTAAAAAAGAGGAAAA+AGG | - | chr1.1:46406752-46406771 | MS.gene47343:CDS | 25.0% |
| ! | GAAACATACACTAAGAAATA+AGG | - | chr1.1:46407175-46407194 | MS.gene47343:intron | 25.0% |
| ! | GTTCGATTCATAAAACTAAA+GGG | - | chr1.1:46407197-46407216 | MS.gene47343:intron | 25.0% |
| ! | TAATGCAATGAACAAACTTA+AGG | - | chr1.1:46409046-46409065 | MS.gene47343:intron | 25.0% |
| ! | TCAAGTAAAAATATGTCATG+TGG | - | chr1.1:46406671-46406690 | MS.gene47343:CDS | 25.0% |
| ! | TTCTTAGTGTATGTTTCAAT+TGG | + | chr1.1:46407172-46407191 | None:intergenic | 25.0% |
| !! | AATTTTGTACTTACTTCTTG+TGG | - | chr1.1:46407534-46407553 | MS.gene47343:intron | 25.0% |
| !! | ATATAAGCTATAAACCGTTT+TGG | + | chr1.1:46408145-46408164 | None:intergenic | 25.0% |
| !! | TAAGTTTGTTCATTGCATTA+AGG | + | chr1.1:46409046-46409065 | None:intergenic | 25.0% |
| !! | TCTATTTGTTGAAGTTTCTA+AGG | - | chr1.1:46407591-46407610 | MS.gene47343:intron | 25.0% |
| !! | TGAAAAGCTTAACTCAATTT+TGG | - | chr1.1:46407447-46407466 | MS.gene47343:intron | 25.0% |
| !! | TTTTGGCATCAAAATTTTGA+TGG | - | chr1.1:46406806-46406825 | MS.gene47343:CDS | 25.0% |
| !!! | TATTTTGGAAAAAAGTTGCT+AGG | - | chr1.1:46407504-46407523 | MS.gene47343:intron | 25.0% |
| AATCGTTGACATCTAAATCT+AGG | + | chr1.1:46407962-46407981 | None:intergenic | 30.0% | |
| ACAGTTGAGAAAAAAGTTAG+AGG | + | chr1.1:46408443-46408462 | None:intergenic | 30.0% | |
| CATGAATGATCAAGAAACAA+AGG | + | chr1.1:46406459-46406478 | None:intergenic | 30.0% | |
| GGTTCGATTCATAAAACTAA+AGG | - | chr1.1:46407196-46407215 | MS.gene47343:intron | 30.0% | |
| TAAACACTTACGAGACTATT+TGG | - | chr1.1:46408050-46408069 | MS.gene47343:intron | 30.0% | |
| TAAATAAGCGCTTCTCATAT+AGG | + | chr1.1:46408225-46408244 | None:intergenic | 30.0% | |
| TCTTACATTCTCTTATGGAA+GGG | - | chr1.1:46409085-46409104 | MS.gene47343:intron | 30.0% | |
| TCTTTCAAGAGCAAATATGA+AGG | - | chr1.1:46406361-46406380 | MS.gene47343:CDS | 30.0% | |
| TTATTTCCATATGTTCTCCA+GGG | - | chr1.1:46408112-46408131 | MS.gene47343:intron | 30.0% | |
| TTTATTTCCATATGTTCTCC+AGG | - | chr1.1:46408111-46408130 | MS.gene47343:intron | 30.0% | |
| TTTGAAAGAAAAGACATGGA+AGG | + | chr1.1:46408275-46408294 | None:intergenic | 30.0% | |
| ! | ATGTTACACTAGCTTCATTT+AGG | - | chr1.1:46406476-46406495 | MS.gene47343:CDS | 30.0% |
| ! | ATTTTTGCCAAAAATTACCG+TGG | - | chr1.1:46407119-46407138 | MS.gene47343:CDS | 30.0% |
| ! | CAGAACTAGTTGAGTATTTT+GGG | - | chr1.1:46406646-46406665 | MS.gene47343:CDS | 30.0% |
| ! | CTATTTACCACGGTAATTTT+TGG | + | chr1.1:46407129-46407148 | None:intergenic | 30.0% |
| ! | TTCATCATCTAGTGTGTTTT+TGG | - | chr1.1:46406394-46406413 | MS.gene47343:CDS | 30.0% |
| !! | TTTCATAGATATCGGCTTTA+AGG | - | chr1.1:46407989-46408008 | MS.gene47343:CDS | 30.0% |
| !!! | CTTTTTTCTCAACTGTGTAT+AGG | - | chr1.1:46408447-46408466 | MS.gene47343:intron | 30.0% |
| !!! | TACTCTTTTGAAGCCTAATA+TGG | - | chr1.1:46408875-46408894 | MS.gene47343:intron | 30.0% |
| AACCACATTCTATTAGCTAG+TGG | + | chr1.1:46407006-46407025 | None:intergenic | 35.0% | |
| ACACTCTTCTCTATTCATCT+AGG | + | chr1.1:46406568-46406587 | None:intergenic | 35.0% | |
| ATTGAGATGCAAATGCATCA+CGG | + | chr1.1:46408375-46408394 | None:intergenic | 35.0% | |
| CTAATAATCCGTGCAACAAA+CGG | - | chr1.1:46407386-46407405 | MS.gene47343:intron | 35.0% | |
| CTCTTACATTCTCTTATGGA+AGG | - | chr1.1:46409084-46409103 | MS.gene47343:intron | 35.0% | |
| GTTGACATCTAAATCTAGGA+TGG | + | chr1.1:46407958-46407977 | None:intergenic | 35.0% | |
| TAAGAGAATGTAAGAGTCCA+AGG | + | chr1.1:46409080-46409099 | None:intergenic | 35.0% | |
| TAATAATCCGTGCAACAAAC+GGG | - | chr1.1:46407387-46407406 | MS.gene47343:intron | 35.0% | |
| TACCTTCAAGAAGAACATGA+TGG | + | chr1.1:46408857-46408876 | None:intergenic | 35.0% | |
| TATCAAGGTAATGCTAACCT+TGG | - | chr1.1:46409221-46409240 | MS.gene47343:intron | 35.0% | |
| TGATAGTAGATTGCAATCTC+TGG | - | chr1.1:46407254-46407273 | MS.gene47343:intron | 35.0% | |
| TGGACTCTTACATTCTCTTA+TGG | - | chr1.1:46409080-46409099 | MS.gene47343:intron | 35.0% | |
| TTCAGAGTCTCTTCATGTTA+AGG | - | chr1.1:46409253-46409272 | MS.gene47343:intron | 35.0% | |
| TTCTATTAGCAACTAGCAGT+TGG | - | chr1.1:46407024-46407043 | MS.gene47343:CDS | 35.0% | |
| TTCTTCAACACATCCACAAA+GGG | + | chr1.1:46408477-46408496 | None:intergenic | 35.0% | |
| TTTAACAAATTCTCGTCGTG+TGG | - | chr1.1:46408297-46408316 | MS.gene47343:intron | 35.0% | |
| TTTCTTCAACACATCCACAA+AGG | + | chr1.1:46408478-46408497 | None:intergenic | 35.0% | |
| ! | ACTTCAGCAAAGTACTCTTA+AGG | - | chr1.1:46409109-46409128 | MS.gene47343:intron | 35.0% |
| ! | ATTGCCAATGCTGCTTATAT+TGG | - | chr1.1:46407640-46407659 | MS.gene47343:intron | 35.0% |
| ! | CACTAGCTTCATTTAGGTAT+CGG | - | chr1.1:46406482-46406501 | MS.gene47343:CDS | 35.0% |
| ! | GACTGCAAACTTTTATACTG+TGG | - | chr1.1:46406703-46406722 | MS.gene47343:CDS | 35.0% |
| ! | GCAGAACTAGTTGAGTATTT+TGG | - | chr1.1:46406645-46406664 | MS.gene47343:CDS | 35.0% |
| AACTTAAGGGAAAGAAGCCT+TGG | - | chr1.1:46409060-46409079 | MS.gene47343:intron | 40.0% | |
| AAGCCTAATATGGTTACACC+AGG | - | chr1.1:46408885-46408904 | MS.gene47343:intron | 40.0% | |
| AATAATCCGTGCAACAAACG+GGG | - | chr1.1:46407388-46407407 | MS.gene47343:intron | 40.0% | |
| AATGGAGAAACCACAACTCA+AGG | - | chr1.1:46408555-46408574 | MS.gene47343:intron | 40.0% | |
| ACCATTCTCTTGGCATATGA+CGG | + | chr1.1:46408724-46408743 | None:intergenic | 40.0% | |
| AGAAACCACAACTCAAGGTT+TGG | - | chr1.1:46408560-46408579 | MS.gene47343:intron | 40.0% | |
| AGAATCTCAGGCTCTACAAT+TGG | + | chr1.1:46408753-46408772 | None:intergenic | 40.0% | |
| AGAGCCAATATAAGCAGCAT+TGG | + | chr1.1:46407647-46407666 | None:intergenic | 40.0% | |
| ATAACCTCAGGAGCAACTTT+AGG | + | chr1.1:46408921-46408940 | None:intergenic | 40.0% | |
| ATTTGGACCGATCTTTAGCA+CGG | + | chr1.1:46408649-46408668 | None:intergenic | 40.0% | |
| CACCACTAGCTAATAGAATG+TGG | - | chr1.1:46407001-46407020 | MS.gene47343:CDS | 40.0% | |
| CATATGCCAAGAGAATGGTT+TGG | - | chr1.1:46408725-46408744 | MS.gene47343:intron | 40.0% | |
| CCAGACAAGAAAACTATAGC+TGG | + | chr1.1:46408993-46409012 | None:intergenic | 40.0% | |
| CGTTCTTGCAACATGTTACA+AGG | - | chr1.1:46408821-46408840 | MS.gene47343:intron | 40.0% | |
| CTATATCAAAAAACCGCTGC+AGG | - | chr1.1:46407838-46407857 | MS.gene47343:CDS | 40.0% | |
| GAAAACTATAGCTGGAACTG+CGG | + | chr1.1:46408985-46409004 | None:intergenic | 40.0% | |
| GACAAAATTACGGTCGAATG+TGG | - | chr1.1:46407073-46407092 | MS.gene47343:CDS | 40.0% | |
| GACCATCATGTTCTTCTTGA+AGG | - | chr1.1:46408852-46408871 | MS.gene47343:intron | 40.0% | |
| GATCCTGGTGTAACCATATT+AGG | + | chr1.1:46408891-46408910 | None:intergenic | 40.0% | |
| GATGAATCTACTGGCACAAT+TGG | - | chr1.1:46407691-46407710 | MS.gene47343:intron | 40.0% | |
| GCAAATTCAGAAGCAACTCT+AGG | - | chr1.1:46409194-46409213 | MS.gene47343:intron | 40.0% | |
| GGCAGAATCACTATTTACCA+CGG | + | chr1.1:46407139-46407158 | None:intergenic | 40.0% | |
| GTTTCAATTGGCAGCGATTA+TGG | + | chr1.1:46407160-46407179 | None:intergenic | 40.0% | |
| TTGAGATGCAAATGCATCAC+GGG | + | chr1.1:46408374-46408393 | None:intergenic | 40.0% | |
| TTGGAACCAAACCATTCTCT+TGG | + | chr1.1:46408734-46408753 | None:intergenic | 40.0% | |
| ! | AGCAAAGTACTCTTAAGGCA+TGG | - | chr1.1:46409114-46409133 | MS.gene47343:intron | 40.0% |
| ! | ATTTATCCCCGTTTGTTGCA+CGG | + | chr1.1:46407397-46407416 | None:intergenic | 40.0% |
| ! | CAAAGTACTCTTAAGGCATG+GGG | - | chr1.1:46409116-46409135 | MS.gene47343:intron | 40.0% |
| ! | CCAGCTATAGTTTTCTTGTC+TGG | - | chr1.1:46408990-46409009 | MS.gene47343:intron | 40.0% |
| ! | GATGAATAGAGAAGAGTGTG+TGG | - | chr1.1:46406569-46406588 | MS.gene47343:CDS | 40.0% |
| ! | GCAAAGTACTCTTAAGGCAT+GGG | - | chr1.1:46409115-46409134 | MS.gene47343:intron | 40.0% |
| ! | GCAACTCTAGGAACTTATCA+AGG | - | chr1.1:46409206-46409225 | MS.gene47343:intron | 40.0% |
| ! | GCTATAGTTTTCTTGTCTGG+TGG | - | chr1.1:46408993-46409012 | MS.gene47343:intron | 40.0% |
| !! | AGCAAGATTCTAGTCTTGCT+TGG | - | chr1.1:46406969-46406988 | MS.gene47343:CDS | 40.0% |
| !! | ATTCTAGTCTTGCTTGGGAT+TGG | - | chr1.1:46406975-46406994 | MS.gene47343:CDS | 40.0% |
| !! | GCAAGATTCTAGTCTTGCTT+GGG | - | chr1.1:46406970-46406989 | MS.gene47343:CDS | 40.0% |
| !! | TGCAAGAAGTACTATGAAGC+CGG | - | chr1.1:46408600-46408619 | MS.gene47343:intron | 40.0% |
| !!! | TATCGGCTTTAAGGCCTTTT+TGG | - | chr1.1:46407998-46408017 | MS.gene47343:intron | 40.0% |
| AAAAACCGCTGCAGGTAGTA+TGG | - | chr1.1:46407846-46407865 | MS.gene47343:CDS | 45.0% | |
| AAGAAAGCTGGAGTTCTTCC+GGG | - | chr1.1:46408492-46408511 | MS.gene47343:intron | 45.0% | |
| ACTCAAGGTTTGGATGACCT+TGG | - | chr1.1:46408570-46408589 | MS.gene47343:intron | 45.0% | |
| AGAATCCATACTACCTGCAG+CGG | + | chr1.1:46407854-46407873 | None:intergenic | 45.0% | |
| AGCAATGCAGCTTGAGCTTT+AGG | + | chr1.1:46409161-46409180 | None:intergenic | 45.0% | |
| ATGCTACCCTGGAGAACATA+TGG | + | chr1.1:46408121-46408140 | None:intergenic | 45.0% | |
| CAGTAGATTCATCAGCAGCA+AGG | + | chr1.1:46407684-46407703 | None:intergenic | 45.0% | |
| CGAACAAGATAACACCACTG+AGG | + | chr1.1:46407810-46407829 | None:intergenic | 45.0% | |
| CGTGTGGTAGATGATTGATG+AGG | - | chr1.1:46408313-46408332 | MS.gene47343:intron | 45.0% | |
| CTCAAGCTGCATTGCTTGTT+AGG | - | chr1.1:46409165-46409184 | MS.gene47343:intron | 45.0% | |
| CTTGCTGCTGATGAATCTAC+TGG | - | chr1.1:46407682-46407701 | MS.gene47343:intron | 45.0% | |
| GAAGAAAGCTGGAGTTCTTC+CGG | - | chr1.1:46408491-46408510 | MS.gene47343:intron | 45.0% | |
| GACAAGGGAGATGGTTCATT+TGG | + | chr1.1:46408666-46408685 | None:intergenic | 45.0% | |
| GATCCATCCACTAGAATCTC+AGG | + | chr1.1:46408765-46408784 | None:intergenic | 45.0% | |
| GCAATCTCTGGTGATACTTG+AGG | - | chr1.1:46407266-46407285 | MS.gene47343:intron | 45.0% | |
| GGTAATGCTAACCTTGGTGA+TGG | - | chr1.1:46409227-46409246 | MS.gene47343:intron | 45.0% | |
| GTGGATGTGTTGAAGAAAGC+TGG | - | chr1.1:46408480-46408499 | MS.gene47343:intron | 45.0% | |
| TAGATGATTGATGAGGTCCG+AGG | - | chr1.1:46408320-46408339 | MS.gene47343:intron | 45.0% | |
| TCAATCCACGAAAACGCCTA+CGG | - | chr1.1:46408684-46408703 | MS.gene47343:intron | 45.0% | |
| TCCAGGGTAGCATACCAAAA+CGG | - | chr1.1:46408128-46408147 | MS.gene47343:intron | 45.0% | |
| TGAGGCAGTCTAAACAACCA+GGG | + | chr1.1:46407792-46407811 | None:intergenic | 45.0% | |
| TGTAGAGCCTGAGATTCTAG+TGG | - | chr1.1:46408755-46408774 | MS.gene47343:intron | 45.0% | |
| TGTGGTTTCTCCATTTGTGC+CGG | + | chr1.1:46408550-46408569 | None:intergenic | 45.0% | |
| ! | ACTTTAGGAGAGTCTGATCC+TGG | + | chr1.1:46408906-46408925 | None:intergenic | 45.0% |
| ! | ATTTGTGCCGGCAAGTTCAA+CGG | + | chr1.1:46408538-46408557 | None:intergenic | 45.0% |
| ! | GTCATCCAAACCTTGAGTTG+TGG | + | chr1.1:46408568-46408587 | None:intergenic | 45.0% |
| ! | TTCCAACTAAGTTGACGCCT+CGG | + | chr1.1:46408340-46408359 | None:intergenic | 45.0% |
| !! | GCGTTTTCGTGGATTGACAA+GGG | + | chr1.1:46408681-46408700 | None:intergenic | 45.0% |
| !! | GTGTATAGGAGTACCCTTTG+TGG | - | chr1.1:46408461-46408480 | MS.gene47343:intron | 45.0% |
| !! | TATATTGGCTCTCCCGGAAA+GGG | - | chr1.1:46407655-46407674 | MS.gene47343:intron | 45.0% |
| !! | TTATATTGGCTCTCCCGGAA+AGG | - | chr1.1:46407654-46407673 | MS.gene47343:intron | 45.0% |
| AAGGGAACCGTTGAACTTGC+CGG | - | chr1.1:46408528-46408547 | MS.gene47343:intron | 50.0% | |
| ACAAAGCTCGGACTGTGTGT+TGG | + | chr1.1:46408947-46408966 | None:intergenic | 50.0% | |
| ACTTCTTGCACCTCTGACCA+AGG | + | chr1.1:46408590-46408609 | None:intergenic | 50.0% | |
| AGCAGCAAGGATACCCTTTC+CGG | + | chr1.1:46407671-46407690 | None:intergenic | 50.0% | |
| AGTACTATGAAGCCGGTGCA+AGG | - | chr1.1:46408607-46408626 | MS.gene47343:intron | 50.0% | |
| AGTACTCTTAAGGCATGGGG+TGG | - | chr1.1:46409119-46409138 | MS.gene47343:intron | 50.0% | |
| CAAAGCTCGGACTGTGTGTT+GGG | + | chr1.1:46408946-46408965 | None:intergenic | 50.0% | |
| CCATTTAGCGAACCTTGCAC+CGG | + | chr1.1:46408622-46408641 | None:intergenic | 50.0% | |
| CCCTTGTCAACCTTGATACC+CGG | + | chr1.1:46408513-46408532 | None:intergenic | 50.0% | |
| CCGGGTATCAAGGTTGACAA+GGG | - | chr1.1:46408510-46408529 | MS.gene47343:intron | 50.0% | |
| CTCTCCTAAAGTTGCTCCTG+AGG | - | chr1.1:46408914-46408933 | MS.gene47343:intron | 50.0% | |
| CTGAGGCAGTCTAAACAACC+AGG | + | chr1.1:46407793-46407812 | None:intergenic | 50.0% | |
| GAACGGTTCGCAACAAAGCT+CGG | + | chr1.1:46408959-46408978 | None:intergenic | 50.0% | |
| GAGCCTGAGATTCTAGTGGA+TGG | - | chr1.1:46408759-46408778 | MS.gene47343:intron | 50.0% | |
| GAGGCAGTCTAAACAACCAG+GGG | + | chr1.1:46407791-46407810 | None:intergenic | 50.0% | |
| GATGCAAATGCATCACGGGA+AGG | + | chr1.1:46408370-46408389 | None:intergenic | 50.0% | |
| GCCGTCATATGCCAAGAGAA+TGG | - | chr1.1:46408720-46408739 | MS.gene47343:intron | 50.0% | |
| GCGATTCGCTAGCATCAATG+TGG | - | chr1.1:46407717-46407736 | MS.gene47343:intron | 50.0% | |
| GGCATAACGAGCTAAACCGT+AGG | + | chr1.1:46408703-46408722 | None:intergenic | 50.0% | |
| GGTTGTTTAGACTGCCTCAG+TGG | - | chr1.1:46407793-46407812 | MS.gene47343:CDS | 50.0% | |
| GTGTGTTGGGCTATAACCTC+AGG | + | chr1.1:46408933-46408952 | None:intergenic | 50.0% | |
| GTTGAACTTGCCGGCACAAA+TGG | - | chr1.1:46408537-46408556 | MS.gene47343:intron | 50.0% | |
| GTTTGGATGACCTTGGTCAG+AGG | - | chr1.1:46408577-46408596 | MS.gene47343:intron | 50.0% | |
| TCCGGGTATCAAGGTTGACA+AGG | - | chr1.1:46408509-46408528 | MS.gene47343:intron | 50.0% | |
| TGGAGTTCTTCCGGGTATCA+AGG | - | chr1.1:46408500-46408519 | MS.gene47343:intron | 50.0% | |
| ! | CTAAACCGTAGGCGTTTTCG+TGG | + | chr1.1:46408692-46408711 | None:intergenic | 50.0% |
| ! | GTCTGGTGGACAAAGTGAAG+AGG | - | chr1.1:46409007-46409026 | MS.gene47343:intron | 50.0% |
| ! | TCGTGGATTGACAAGGGAGA+TGG | + | chr1.1:46408675-46408694 | None:intergenic | 50.0% |
| ! | TTCGCGAAGAGTACGTCTGT+TGG | + | chr1.1:46407755-46407774 | None:intergenic | 50.0% |
| !! | ACCGTTTTGGTATGCTACCC+TGG | + | chr1.1:46408132-46408151 | None:intergenic | 50.0% |
| !! | ACTCTGAAGCACCATCACCA+AGG | + | chr1.1:46409241-46409260 | None:intergenic | 50.0% |
| !! | GCTGCTTATATTGGCTCTCC+CGG | - | chr1.1:46407649-46407668 | MS.gene47343:intron | 50.0% |
| !! | GGCGTTTTCGTGGATTGACA+AGG | + | chr1.1:46408682-46408701 | None:intergenic | 50.0% |
| ACTATAGCTGGAACTGCGGC+AGG | + | chr1.1:46408981-46409000 | None:intergenic | 55.0% | |
| CCGGTGCAAGGTTCGCTAAA+TGG | - | chr1.1:46408619-46408638 | MS.gene47343:intron | 55.0% | |
| GAACTCTTGTTCACTGCCCC+TGG | - | chr1.1:46407772-46407791 | MS.gene47343:intron | 55.0% | |
| GCAGCAAGGATACCCTTTCC+GGG | + | chr1.1:46407670-46407689 | None:intergenic | 55.0% | |
| TGGCGTGCCGTGCTAAAGAT+CGG | - | chr1.1:46408639-46408658 | MS.gene47343:intron | 55.0% | |
| ! | GTCCGAGGCGTCAACTTAGT+TGG | - | chr1.1:46408335-46408354 | MS.gene47343:intron | 55.0% |
| AGCTGGAACTGCGGCAGGAA+CGG | + | chr1.1:46408976-46408995 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 46406355 | 46409289 | 46406355 | ID=MS.gene47343 |
| chr1.1 | mRNA | 46406355 | 46409289 | 46406355 | ID=MS.gene47343.t1;Parent=MS.gene47343 |
| chr1.1 | exon | 46409262 | 46409289 | 46409262 | ID=MS.gene47343.t1.exon1;Parent=MS.gene47343.t1 |
| chr1.1 | CDS | 46409262 | 46409289 | 46409262 | ID=cds.MS.gene47343.t1;Parent=MS.gene47343.t1 |
| chr1.1 | exon | 46407785 | 46408012 | 46407785 | ID=MS.gene47343.t1.exon2;Parent=MS.gene47343.t1 |
| chr1.1 | CDS | 46407785 | 46408012 | 46407785 | ID=cds.MS.gene47343.t1;Parent=MS.gene47343.t1 |
| chr1.1 | exon | 46406355 | 46407175 | 46406355 | ID=MS.gene47343.t1.exon3;Parent=MS.gene47343.t1 |
| chr1.1 | CDS | 46406355 | 46407175 | 46406355 | ID=cds.MS.gene47343.t1;Parent=MS.gene47343.t1 |
| Gene Sequence |
| Protein sequence |
