Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47379.t1 | XP_013448036.1 | 95.2 | 210 | 10 | 0 | 1 | 210 | 1 | 210 | 2.00E-108 | 401.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47379.t1 | Q9C7A8 | 64.3 | 210 | 74 | 1 | 1 | 210 | 1 | 209 | 1.7e-71 | 270.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47379.t1 | I3SFH0 | 95.2 | 210 | 10 | 0 | 1 | 210 | 1 | 210 | 1.5e-108 | 401.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene062116 | MS.gene47379 | PPI |
| MS.gene78156 | MS.gene47379 | PPI |
| MS.gene071261 | MS.gene47379 | PPI |
| MS.gene025347 | MS.gene47379 | PPI |
| MS.gene045765 | MS.gene47379 | PPI |
| MS.gene85342 | MS.gene47379 | PPI |
| MS.gene066551 | MS.gene47379 | PPI |
| MS.gene070139 | MS.gene47379 | PPI |
| MS.gene066552 | MS.gene47379 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47379.t1 | MTR_7g029455 | 95.238 | 210 | 10 | 0 | 1 | 210 | 1 | 210 | 5.30e-149 | 412 |
| MS.gene47379.t1 | MTR_7g029455 | 92.593 | 216 | 10 | 1 | 1 | 210 | 1 | 216 | 2.48e-146 | 406 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47379.t1 | AT3G12530 | 64.286 | 210 | 74 | 1 | 1 | 210 | 1 | 209 | 1.35e-95 | 277 |
| MS.gene47379.t1 | AT3G12530 | 64.286 | 210 | 74 | 1 | 1 | 210 | 1 | 209 | 1.35e-95 | 277 |
| MS.gene47379.t1 | AT3G12530 | 64.921 | 191 | 66 | 1 | 20 | 210 | 1 | 190 | 2.72e-87 | 256 |
| MS.gene47379.t1 | AT3G12530 | 66.667 | 147 | 49 | 0 | 1 | 147 | 1 | 147 | 9.67e-70 | 209 |
Find 48 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTAAAGCTCTCCCAATAAA+TGG | 0.205932 | 1.4:+50990364 | None:intergenic |
| AATATTGTTCGCCCATTTAT+TGG | 0.207398 | 1.4:-50990376 | MS.gene47379:CDS |
| TCCGAAACTCTCTCTGGGTC+TGG | 0.302087 | 1.4:+50990307 | None:intergenic |
| TGACAATTGCAGGGAGATTT+CGG | 0.324639 | 1.4:-50992858 | MS.gene47379:intron |
| CATCGTGACTAATCTCAAAA+TGG | 0.330451 | 1.4:-50992985 | MS.gene47379:CDS |
| TCTGGGTCTGGGTTCAAGTC+TGG | 0.338635 | 1.4:+50990319 | None:intergenic |
| GTAACAATCTGCGGAGTAAA+TGG | 0.340928 | 1.4:+50992834 | None:intergenic |
| CGTCTATCCGAAACTCTCTC+TGG | 0.345540 | 1.4:+50990301 | None:intergenic |
| GCAAATGCTCCGACATCTCT+TGG | 0.362089 | 1.4:+50992083 | None:intergenic |
| ATATTGTTCGCCCATTTATT+GGG | 0.393276 | 1.4:-50990375 | MS.gene47379:CDS |
| GAAATTTCTACATAATGAAA+TGG | 0.395437 | 1.4:+50992061 | None:intergenic |
| ATGAAAAGAGTGAAAGTTCA+TGG | 0.404231 | 1.4:+50993137 | None:intergenic |
| CCGAAACTCTCTCTGGGTCT+GGG | 0.440746 | 1.4:+50990308 | None:intergenic |
| TTGTTACTCAAGTACCGCTT+TGG | 0.468205 | 1.4:-50992818 | MS.gene47379:CDS |
| GAACTCACCATGTATGCATC+AGG | 0.471100 | 1.4:+50991913 | None:intergenic |
| CCCAGACCCAGAGAGAGTTT+CGG | 0.471200 | 1.4:-50990308 | MS.gene47379:CDS |
| TTTGGTTGGCAATTGCTCTC+AGG | 0.473747 | 1.4:-50992800 | MS.gene47379:CDS |
| TTGAGGACATCAGAGATGTA+AGG | 0.475567 | 1.4:-50991796 | MS.gene47379:CDS |
| GCTCCATTGTCCCTCCTCAA+TGG | 0.483624 | 1.4:-50992764 | MS.gene47379:CDS |
| GTAAAGCTCTCCCAATAAAT+GGG | 0.485912 | 1.4:+50990365 | None:intergenic |
| TAAAGTTGAAACTGACTTGG+AGG | 0.491249 | 1.4:-50991768 | MS.gene47379:CDS |
| CAAATGCTCCGACATCTCTT+GGG | 0.494044 | 1.4:+50992084 | None:intergenic |
| ACATACTCTCGGGGCATTGT+GGG | 0.504716 | 1.4:+50990267 | None:intergenic |
| CAGCATTCCTGATGCATACA+TGG | 0.510816 | 1.4:-50991920 | MS.gene47379:intron |
| AACATACTCTCGGGGCATTG+TGG | 0.523199 | 1.4:+50990266 | None:intergenic |
| TTTCAAAGAGAAGAGATGGC+TGG | 0.523532 | 1.4:-50993169 | None:intergenic |
| TTCAAAGAGAAGAGATGGCT+GGG | 0.527242 | 1.4:-50993168 | None:intergenic |
| TCATAAAGTTGAAACTGACT+TGG | 0.529908 | 1.4:-50991771 | MS.gene47379:CDS |
| GTCTATCCGAAACTCTCTCT+GGG | 0.530720 | 1.4:+50990302 | None:intergenic |
| ACTGACTTGGAGGCATTCAA+TGG | 0.547053 | 1.4:-50991758 | MS.gene47379:CDS |
| GGGGCATTGTGGGCAACTTG+TGG | 0.548530 | 1.4:+50990277 | None:intergenic |
| TAAGTTGACACAAGTGTTGG+AGG | 0.551466 | 1.4:-50992119 | MS.gene47379:CDS |
| TACTCAAGTACCGCTTTGGT+TGG | 0.563566 | 1.4:-50992814 | MS.gene47379:CDS |
| TGGTCGTACAATAGCTGTGA+AGG | 0.568663 | 1.4:-50991738 | MS.gene47379:intron |
| GAAGGTGAGGTCTCTAATTG+AGG | 0.573692 | 1.4:-50991813 | MS.gene47379:intron |
| CATCCATTGAGGAGGGACAA+TGG | 0.577418 | 1.4:+50992761 | None:intergenic |
| AGATAAGTTGACACAAGTGT+TGG | 0.580530 | 1.4:-50992122 | MS.gene47379:CDS |
| GCGAAACTCCCAAGAGATGT+CGG | 0.605151 | 1.4:-50992092 | MS.gene47379:CDS |
| GCAATTGCTCTCAGGAAGAG+AGG | 0.614416 | 1.4:-50992792 | MS.gene47379:CDS |
| CCTCCTCAATGGATGACTGT+TGG | 0.615572 | 1.4:-50992753 | MS.gene47379:intron |
| CATCGCTGAAGACGAGATTG+TGG | 0.631390 | 1.4:-50993009 | MS.gene47379:CDS |
| TTACCAACAGTCATCCATTG+AGG | 0.655858 | 1.4:+50992750 | None:intergenic |
| CAACAGTCATCCATTGAGGA+GGG | 0.658288 | 1.4:+50992754 | None:intergenic |
| CCAACAGTCATCCATTGAGG+AGG | 0.658541 | 1.4:+50992753 | None:intergenic |
| CTTACAGATATGAGACAGAG+AGG | 0.661628 | 1.4:+50992960 | None:intergenic |
| ATCAAACAAACATACTCTCG+GGG | 0.668787 | 1.4:+50990258 | None:intergenic |
| GGTACTTGAGTAACAATCTG+CGG | 0.687743 | 1.4:+50992825 | None:intergenic |
| AGAGCAATTGCCAACCAAAG+CGG | 0.692803 | 1.4:+50992804 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATGGTTTATACATAA+AGG | + | chr1.4:50991471-50991490 | None:intergenic | 15.0% |
| !! | ATTAAATATGAGAAAACAAA+AGG | - | chr1.4:50991758-50991777 | MS.gene47379:CDS | 15.0% |
| !! | CACTAAAAATAAAAAATAGA+AGG | + | chr1.4:50991023-50991042 | None:intergenic | 15.0% |
| !!! | ATATTGAATTTTTACATCTT+TGG | + | chr1.4:50993039-50993058 | None:intergenic | 15.0% |
| !!! | ATATTTCTATTATAAAAGAG+AGG | + | chr1.4:50991978-50991997 | None:intergenic | 15.0% |
| !!! | TATTTCTATTATAAAAGAGA+GGG | + | chr1.4:50991977-50991996 | None:intergenic | 15.0% |
| !!! | TGACGTTTTTTTTATATATA+AGG | - | chr1.4:50991316-50991335 | MS.gene47379:intron | 15.0% |
| !!! | TTAGTTGTTTTTTTTTAACA+AGG | - | chr1.4:50992204-50992223 | MS.gene47379:intron | 15.0% |
| !!! | TTGTATTTTAATTCTGATTT+GGG | - | chr1.4:50990633-50990652 | MS.gene47379:intron | 15.0% |
| !!! | TTTTGTAATCAAATCAAATA+CGG | + | chr1.4:50991413-50991432 | None:intergenic | 15.0% |
| !! | AATAACAACATAGTTGTATA+TGG | + | chr1.4:50989887-50989906 | None:intergenic | 20.0% |
| !! | ACATAATGTTGTGAAAAAAT+AGG | - | chr1.4:50990298-50990317 | MS.gene47379:CDS | 20.0% |
| !! | ATTATTTACACTTGAATAGA+AGG | - | chr1.4:50991484-50991503 | MS.gene47379:intron | 20.0% |
| !! | CATAATGTTGTGAAAAAATA+GGG | - | chr1.4:50990299-50990318 | MS.gene47379:CDS | 20.0% |
| !! | CATATATATATTCTTCCAAA+TGG | - | chr1.4:50993101-50993120 | MS.gene47379:intron | 20.0% |
| !! | GAAATTTCTACATAATGAAA+TGG | + | chr1.4:50990912-50990931 | None:intergenic | 20.0% |
| !! | GATTAAAAATTTATCTGCAA+TGG | - | chr1.4:50992566-50992585 | MS.gene47379:intron | 20.0% |
| !! | GGAATAGAACTTAAAAAATA+AGG | + | chr1.4:50992423-50992442 | None:intergenic | 20.0% |
| !! | TTCTATTCAAGTGTAAATAA+TGG | + | chr1.4:50991485-50991504 | None:intergenic | 20.0% |
| !! | TTTCTCATATTTAATTACAG+TGG | + | chr1.4:50991753-50991772 | None:intergenic | 20.0% |
| !! | TTTGTAATCAAATCAAATAC+GGG | + | chr1.4:50991412-50991431 | None:intergenic | 20.0% |
| !!! | ACATTTTACATCATAATTCT+TGG | - | chr1.4:50992534-50992553 | MS.gene47379:intron | 20.0% |
| !!! | CTTGTATTTTAATTCTGATT+TGG | - | chr1.4:50990632-50990651 | MS.gene47379:intron | 20.0% |
| !!! | GAACTTTCTTTAAAATAATC+TGG | + | chr1.4:50991731-50991750 | None:intergenic | 20.0% |
| !!! | TTTTTCAGTTTAAAACTTGT+TGG | - | chr1.4:50990777-50990796 | MS.gene47379:intron | 20.0% |
| !!! | TTTTTTTAATGACAATTGCA+GGG | - | chr1.4:50990103-50990122 | MS.gene47379:intron | 20.0% |
| ! | ATATATTCTTCCAAATGGAA+TGG | - | chr1.4:50993106-50993125 | MS.gene47379:intron | 25.0% |
| ! | ATATCAAACAAACATACTCT+CGG | + | chr1.4:50992717-50992736 | None:intergenic | 25.0% |
| ! | ATATTGTTAGAAAGATGGTT+AGG | + | chr1.4:50991928-50991947 | None:intergenic | 25.0% |
| ! | ATTCAGAATCTAATCTATTC+TGG | + | chr1.4:50991848-50991867 | None:intergenic | 25.0% |
| ! | ATTGCGATATATGAGAATAA+AGG | - | chr1.4:50990422-50990441 | MS.gene47379:intron | 25.0% |
| ! | GAGAAATATTGTTAGAAAGA+TGG | + | chr1.4:50991933-50991952 | None:intergenic | 25.0% |
| ! | TAGAAATATCCCTAAAATCA+AGG | - | chr1.4:50991989-50992008 | MS.gene47379:intron | 25.0% |
| ! | TTAGAGATAAAATTGTCTTG+AGG | + | chr1.4:50992077-50992096 | None:intergenic | 25.0% |
| ! | TTTGGATGTAAAAAATGAGT+GGG | + | chr1.4:50993021-50993040 | None:intergenic | 25.0% |
| !! | ATGTCATTTGTATAGACTTT+GGG | - | chr1.4:50992306-50992325 | MS.gene47379:intron | 25.0% |
| !! | GAGATATTTCCTTGATTTTA+GGG | + | chr1.4:50992001-50992020 | None:intergenic | 25.0% |
| !! | GATGAAAGACAAAAATGTTT+TGG | - | chr1.4:50993073-50993092 | MS.gene47379:intron | 25.0% |
| !! | TGAGATATTTCCTTGATTTT+AGG | + | chr1.4:50992002-50992021 | None:intergenic | 25.0% |
| !!! | AATCAGAATGTTTTAGTTGT+TGG | - | chr1.4:50990373-50990392 | MS.gene47379:CDS | 25.0% |
| !!! | GCTGGTTCTTTTAAATTTTT+CGG | - | chr1.4:50990705-50990724 | MS.gene47379:intron | 25.0% |
| !!! | GTTTTTTTAATGACAATTGC+AGG | - | chr1.4:50990102-50990121 | MS.gene47379:intron | 25.0% |
| !!! | TATTTTTTTTCCCCACAAAA+CGG | - | chr1.4:50990254-50990273 | MS.gene47379:intron | 25.0% |
| !!! | TCCTTTTTTTTAGAGTGTTT+TGG | - | chr1.4:50992440-50992459 | MS.gene47379:intron | 25.0% |
| !!! | TTTAAATTTTTCGGTCCTTT+CGG | - | chr1.4:50990714-50990733 | MS.gene47379:intron | 25.0% |
| AATATTGTTCGCCCATTTAT+TGG | - | chr1.4:50992594-50992613 | MS.gene47379:intron | 30.0% | |
| AGGAGATAGAGAAATAGATA+AGG | - | chr1.4:50990442-50990461 | MS.gene47379:intron | 30.0% | |
| AGTTACGTAATTAGGTGATA+AGG | - | chr1.4:50992239-50992258 | MS.gene47379:intron | 30.0% | |
| ATATTGTTCGCCCATTTATT+GGG | - | chr1.4:50992595-50992614 | MS.gene47379:intron | 30.0% | |
| ATGAAAAGAGTGAAAGTTCA+TGG | + | chr1.4:50989836-50989855 | None:intergenic | 30.0% | |
| ATTACTGCAATAAGCATAGT+TGG | - | chr1.4:50990504-50990523 | MS.gene47379:intron | 30.0% | |
| CTTTGGATGTAAAAAATGAG+TGG | + | chr1.4:50993022-50993041 | None:intergenic | 30.0% | |
| GACCTATCAAATGTAAACTT+TGG | + | chr1.4:50992139-50992158 | None:intergenic | 30.0% | |
| GAGTTAGTAGTTACGTAATT+AGG | - | chr1.4:50992231-50992250 | MS.gene47379:intron | 30.0% | |
| GGAGATAGAGAAATAGATAA+GGG | - | chr1.4:50990443-50990462 | MS.gene47379:intron | 30.0% | |
| GTGGGGAAAAAAAATAAGAA+AGG | + | chr1.4:50990250-50990269 | None:intergenic | 30.0% | |
| GTTACGTAATTAGGTGATAA+GGG | - | chr1.4:50992240-50992259 | MS.gene47379:intron | 30.0% | |
| TATCAAACAAACATACTCTC+GGG | + | chr1.4:50992716-50992735 | None:intergenic | 30.0% | |
| TCATAAAGTTGAAACTGACT+TGG | - | chr1.4:50991199-50991218 | MS.gene47379:intron | 30.0% | |
| TCATTTGTCTCTAAACTTAC+TGG | + | chr1.4:50990950-50990969 | None:intergenic | 30.0% | |
| TGAAAAAATAGGGAGAAATG+TGG | - | chr1.4:50990309-50990328 | MS.gene47379:CDS | 30.0% | |
| TGCCAAAGTTTACATTTGAT+AGG | - | chr1.4:50992134-50992153 | MS.gene47379:intron | 30.0% | |
| TTTATACTCGATTTCTGCAA+AGG | - | chr1.4:50992975-50992994 | MS.gene47379:CDS | 30.0% | |
| ! | AACTTTCACTCTTTTCATCA+GGG | - | chr1.4:50989838-50989857 | MS.gene47379:intron | 30.0% |
| ! | AATGCAGAGGATTTTATTCT+TGG | + | chr1.4:50991819-50991838 | None:intergenic | 30.0% |
| ! | AGGTATAGATACATTTTCAC+TGG | - | chr1.4:50992995-50993014 | MS.gene47379:CDS | 30.0% |
| ! | ATATCTCAACTGACTCTATT+TGG | - | chr1.4:50992014-50992033 | MS.gene47379:intron | 30.0% |
| ! | ATGCAGAGGATTTTATTCTT+GGG | + | chr1.4:50991818-50991837 | None:intergenic | 30.0% |
| ! | CATGTCATTTGTATAGACTT+TGG | - | chr1.4:50992305-50992324 | MS.gene47379:intron | 30.0% |
| ! | GCCAAAACACTCTAAAAAAA+AGG | + | chr1.4:50992444-50992463 | None:intergenic | 30.0% |
| ! | TATCTCAACTGACTCTATTT+GGG | - | chr1.4:50992015-50992034 | MS.gene47379:intron | 30.0% |
| ! | TTAGCTTATTTCTCTTGTGA+AGG | - | chr1.4:50991139-50991158 | MS.gene47379:intron | 30.0% |
| !! | AACTTGATTTTGGTCTATTC+TGG | - | chr1.4:50991648-50991667 | MS.gene47379:intron | 30.0% |
| !! | CTCTAAAAAAAAGTGTCACT+AGG | - | chr1.4:50992091-50992110 | MS.gene47379:CDS | 30.0% |
| !! | CTTTAAAATAATCTGGTAGC+AGG | + | chr1.4:50991724-50991743 | None:intergenic | 30.0% |
| !! | GGTATATTTCTGGAAATTTC+TGG | + | chr1.4:50991099-50991118 | None:intergenic | 30.0% |
| !! | TTGTTTTGCAATGTGTGATT+TGG | - | chr1.4:50990544-50990563 | MS.gene47379:intron | 30.0% |
| !! | TTTAATTCTGATTTGGGCTT+AGG | - | chr1.4:50990639-50990658 | MS.gene47379:intron | 30.0% |
| AAAATCCTGCGGTATATTTC+TGG | + | chr1.4:50991109-50991128 | None:intergenic | 35.0% | |
| AATGTTGTGTTTACGAGGAT+TGG | + | chr1.4:50991556-50991575 | None:intergenic | 35.0% | |
| AATTTACCACCTCTAGTGTA+TGG | + | chr1.4:50990405-50990424 | None:intergenic | 35.0% | |
| AATTTCCAGAAATATACCGC+AGG | - | chr1.4:50991101-50991120 | MS.gene47379:intron | 35.0% | |
| AGACCAAAATCAAGTTTACG+AGG | + | chr1.4:50991644-50991663 | None:intergenic | 35.0% | |
| ATCAAACAAACATACTCTCG+GGG | + | chr1.4:50992715-50992734 | None:intergenic | 35.0% | |
| CACACATTGCAAAACAAAAG+TGG | + | chr1.4:50990541-50990560 | None:intergenic | 35.0% | |
| CATCGTGACTAATCTCAAAA+TGG | - | chr1.4:50989985-50990004 | MS.gene47379:intron | 35.0% | |
| CATGAATCATTTCGTCAACA+GGG | - | chr1.4:50992372-50992391 | MS.gene47379:intron | 35.0% | |
| CCTTCTACATAGAGTTCAAA+AGG | + | chr1.4:50991614-50991633 | None:intergenic | 35.0% | |
| CTAGTCACAAACAGATGTTA+TGG | + | chr1.4:50990830-50990849 | None:intergenic | 35.0% | |
| CTATTATAAAAGAGAGGGCA+GGG | + | chr1.4:50991972-50991991 | None:intergenic | 35.0% | |
| GCTTATGACTATTAATCAGC+TGG | - | chr1.4:50990687-50990706 | MS.gene47379:intron | 35.0% | |
| GGTCAGTTTATGTTGTTAAG+AGG | - | chr1.4:50992155-50992174 | MS.gene47379:intron | 35.0% | |
| GTAAAGCTCTCCCAATAAAT+GGG | + | chr1.4:50992608-50992627 | None:intergenic | 35.0% | |
| GTGCAAAGGACATAAAAGTT+TGG | - | chr1.4:50991780-50991799 | MS.gene47379:CDS | 35.0% | |
| TATTATAAAAGAGAGGGCAG+GGG | + | chr1.4:50991971-50991990 | None:intergenic | 35.0% | |
| TCTATTATAAAAGAGAGGGC+AGG | + | chr1.4:50991973-50991992 | None:intergenic | 35.0% | |
| TCTTATAGGACTCAGTGTTT+AGG | + | chr1.4:50992047-50992066 | None:intergenic | 35.0% | |
| TGCATGAAAACCATTCCATT+TGG | + | chr1.4:50993119-50993138 | None:intergenic | 35.0% | |
| TGTAAAGCTCTCCCAATAAA+TGG | + | chr1.4:50992609-50992628 | None:intergenic | 35.0% | |
| ! | AAACTCGCACAAAAAGTACA+TGG | + | chr1.4:50992784-50992803 | None:intergenic | 35.0% |
| ! | AAAGTCTCGAATCTTTTTGG+CGG | - | chr1.4:50991256-50991275 | MS.gene47379:intron | 35.0% |
| ! | ACTTTCACTCTTTTCATCAG+GGG | - | chr1.4:50989839-50989858 | MS.gene47379:intron | 35.0% |
| ! | AGATAAGTTGACACAAGTGT+TGG | - | chr1.4:50990848-50990867 | MS.gene47379:intron | 35.0% |
| ! | CAATTGTAAACCGTTTTGTG+GGG | + | chr1.4:50990267-50990286 | None:intergenic | 35.0% |
| ! | CCTTTTGAACTCTATGTAGA+AGG | - | chr1.4:50991611-50991630 | MS.gene47379:intron | 35.0% |
| ! | GAACTTTCACTCTTTTCATC+AGG | - | chr1.4:50989837-50989856 | MS.gene47379:intron | 35.0% |
| ! | GCAATTGTAAACCGTTTTGT+GGG | + | chr1.4:50990268-50990287 | None:intergenic | 35.0% |
| ! | GGTAAAGTCTCGAATCTTTT+TGG | - | chr1.4:50991253-50991272 | MS.gene47379:intron | 35.0% |
| ! | TGAGAAAACAAAAGGTGCAA+AGG | - | chr1.4:50991766-50991785 | MS.gene47379:CDS | 35.0% |
| ! | TGCAATTGTAAACCGTTTTG+TGG | + | chr1.4:50990269-50990288 | None:intergenic | 35.0% |
| ! | TTATTTCTCTTGTGAAGGTG+AGG | - | chr1.4:50991144-50991163 | MS.gene47379:intron | 35.0% |
| !! | ATTTTGACATGACAAGACAG+TGG | + | chr1.4:50992862-50992881 | None:intergenic | 35.0% |
| !! | ATTTTGGTCTATTCTGGAAG+AGG | - | chr1.4:50991654-50991673 | MS.gene47379:intron | 35.0% |
| !! | TAAAGTTGAAACTGACTTGG+AGG | - | chr1.4:50991202-50991221 | MS.gene47379:intron | 35.0% |
| !!! | ATTGGTTTTGCCATCCAAAA+AGG | + | chr1.4:50991538-50991557 | None:intergenic | 35.0% |
| !!! | TAGTTTTATGCTCCATACCA+AGG | - | chr1.4:50991872-50991891 | MS.gene47379:intron | 35.0% |
| AACACAACATTCATGGACCT+AGG | - | chr1.4:50991565-50991584 | MS.gene47379:intron | 40.0% | |
| ACACTTGAATAGAAGGCAAG+CGG | - | chr1.4:50991491-50991510 | MS.gene47379:intron | 40.0% | |
| ACTCTCCAAACAACACCAAA+AGG | + | chr1.4:50992332-50992351 | None:intergenic | 40.0% | |
| AGCATCAGAAGAAAATCCTG+CGG | + | chr1.4:50991120-50991139 | None:intergenic | 40.0% | |
| ATAGCAATGTCATGTCTCCT+AGG | + | chr1.4:50991585-50991604 | None:intergenic | 40.0% | |
| CCATGAATCATTTCGTCAAC+AGG | - | chr1.4:50992371-50992390 | MS.gene47379:intron | 40.0% | |
| CCATGAATGTTGTGTTTACG+AGG | + | chr1.4:50991561-50991580 | None:intergenic | 40.0% | |
| CCTCGTAAACACAACATTCA+TGG | - | chr1.4:50991558-50991577 | MS.gene47379:intron | 40.0% | |
| CCTGTTGACGAAATGATTCA+TGG | + | chr1.4:50992374-50992393 | None:intergenic | 40.0% | |
| CTTACAGATATGAGACAGAG+AGG | + | chr1.4:50990013-50990032 | None:intergenic | 40.0% | |
| CTTGAGGCTTGCATTCTTAT+AGG | + | chr1.4:50992061-50992080 | None:intergenic | 40.0% | |
| GACGCTGCCTATAAATATCA+GGG | - | chr1.4:50992262-50992281 | MS.gene47379:intron | 40.0% | |
| GGTACTTGAGTAACAATCTG+CGG | + | chr1.4:50990148-50990167 | None:intergenic | 40.0% | |
| GTAACAATCTGCGGAGTAAA+TGG | + | chr1.4:50990139-50990158 | None:intergenic | 40.0% | |
| TCTGATTGTTAGATCGCAGA+AGG | + | chr1.4:50990360-50990379 | None:intergenic | 40.0% | |
| TGACAATTGCAGGGAGATTT+CGG | - | chr1.4:50990112-50990131 | MS.gene47379:intron | 40.0% | |
| TGGGGATCCCTGATATTTAT+AGG | + | chr1.4:50992272-50992291 | None:intergenic | 40.0% | |
| TTACCAACAGTCATCCATTG+AGG | + | chr1.4:50990223-50990242 | None:intergenic | 40.0% | |
| TTGAGGACATCAGAGATGTA+AGG | - | chr1.4:50991174-50991193 | MS.gene47379:intron | 40.0% | |
| ! | CAGCCTCGTAAACTTGATTT+TGG | - | chr1.4:50991638-50991657 | MS.gene47379:intron | 40.0% |
| ! | TGTATAGACTTTGGGCCTTT+TGG | - | chr1.4:50992314-50992333 | MS.gene47379:intron | 40.0% |
| ! | TTGTTACTCAAGTACCGCTT+TGG | - | chr1.4:50990152-50990171 | MS.gene47379:intron | 40.0% |
| !! | AAATTTTTCGGTCCTTTCGG+TGG | - | chr1.4:50990717-50990736 | MS.gene47379:intron | 40.0% |
| !! | GCTTGTATTTGCTTTTGCAG+AGG | - | chr1.4:50993139-50993158 | MS.gene47379:CDS | 40.0% |
| !! | GGAGAAATGTGGTTGATTTG+TGG | - | chr1.4:50990320-50990339 | MS.gene47379:CDS | 40.0% |
| !! | TAAGTTGACACAAGTGTTGG+AGG | - | chr1.4:50990851-50990870 | MS.gene47379:intron | 40.0% |
| ACAAGTCCATACACTAGAGG+TGG | - | chr1.4:50990396-50990415 | MS.gene47379:CDS | 45.0% | |
| ACATGATAGATCGCTCTCTG+GGG | + | chr1.4:50992290-50992309 | None:intergenic | 45.0% | |
| AGAGCAATTGCCAACCAAAG+CGG | + | chr1.4:50990169-50990188 | None:intergenic | 45.0% | |
| ATTCTGGATGCAGAATGCAG+AGG | + | chr1.4:50991832-50991851 | None:intergenic | 45.0% | |
| CAAATGCTCCGACATCTCTT+GGG | + | chr1.4:50990889-50990908 | None:intergenic | 45.0% | |
| CAACAGTCATCCATTGAGGA+GGG | + | chr1.4:50990219-50990238 | None:intergenic | 45.0% | |
| CACTTGAATAGAAGGCAAGC+GGG | - | chr1.4:50991492-50991511 | MS.gene47379:intron | 45.0% | |
| CAGCATTCCTGATGCATACA+TGG | - | chr1.4:50991050-50991069 | MS.gene47379:intron | 45.0% | |
| GAACTCACCATGTATGCATC+AGG | + | chr1.4:50991060-50991079 | None:intergenic | 45.0% | |
| GAAGGTGAGGTCTCTAATTG+AGG | - | chr1.4:50991157-50991176 | MS.gene47379:intron | 45.0% | |
| GACATGATAGATCGCTCTCT+GGG | + | chr1.4:50992291-50992310 | None:intergenic | 45.0% | |
| GGACGCTGCCTATAAATATC+AGG | - | chr1.4:50992261-50992280 | MS.gene47379:intron | 45.0% | |
| GGAGAGATTTCTCTCTGGTT+AGG | + | chr1.4:50991907-50991926 | None:intergenic | 45.0% | |
| GGCTGGAAAATACATGCTGT+TGG | - | chr1.4:50992480-50992499 | MS.gene47379:intron | 45.0% | |
| GGTTAGGAGAGATTTCTCTC+TGG | + | chr1.4:50991912-50991931 | None:intergenic | 45.0% | |
| GTACAGTGGTTGTGAATGTC+TGG | - | chr1.4:50991278-50991297 | MS.gene47379:intron | 45.0% | |
| GTCTATCCGAAACTCTCTCT+GGG | + | chr1.4:50992671-50992690 | None:intergenic | 45.0% | |
| TGACATGATAGATCGCTCTC+TGG | + | chr1.4:50992292-50992311 | None:intergenic | 45.0% | |
| TGCCATCCAAAAAGGTCTAG+CGG | + | chr1.4:50991530-50991549 | None:intergenic | 45.0% | |
| TGGACAAGTCCATACACTAG+AGG | - | chr1.4:50990393-50990412 | MS.gene47379:CDS | 45.0% | |
| TGGTCGTACAATAGCTGTGA+AGG | - | chr1.4:50991232-50991251 | MS.gene47379:intron | 45.0% | |
| TTTGGTTGGCAATTGCTCTC+AGG | - | chr1.4:50990170-50990189 | MS.gene47379:intron | 45.0% | |
| ! | AACTGACTCTATTTGGGCCA+AGG | - | chr1.4:50992021-50992040 | MS.gene47379:intron | 45.0% |
| ! | ATTCTGGAAGAGGTGGGTTT+AGG | - | chr1.4:50991664-50991683 | MS.gene47379:intron | 45.0% |
| ! | TACTCAAGTACCGCTTTGGT+TGG | - | chr1.4:50990156-50990175 | MS.gene47379:intron | 45.0% |
| ! | TCTTTTCATCAGGGGAGGTA+TGG | - | chr1.4:50989847-50989866 | MS.gene47379:intron | 45.0% |
| ! | TGGTCTATTCTGGAAGAGGT+GGG | - | chr1.4:50991658-50991677 | MS.gene47379:intron | 45.0% |
| ! | TTCACTCTTTTCATCAGGGG+AGG | - | chr1.4:50989842-50989861 | MS.gene47379:intron | 45.0% |
| ! | TTGGCGTGTGACGGAAAATT+TGG | - | chr1.4:50992459-50992478 | MS.gene47379:intron | 45.0% |
| ! | TTGGTCTATTCTGGAAGAGG+TGG | - | chr1.4:50991657-50991676 | MS.gene47379:intron | 45.0% |
| !! | ACTGACTTGGAGGCATTCAA+TGG | - | chr1.4:50991212-50991231 | MS.gene47379:intron | 45.0% |
| !! | GAATCTTTTTGGCGGTACAG+TGG | - | chr1.4:50991264-50991283 | MS.gene47379:intron | 45.0% |
| !!! | TAGAGTGTTTTGGCGTGTGA+CGG | - | chr1.4:50992450-50992469 | MS.gene47379:intron | 45.0% |
| !!! | TTGGGCCTTTTGGTGTTGTT+TGG | - | chr1.4:50992324-50992343 | MS.gene47379:intron | 45.0% |
| AGGACTCAGTGTTTAGGCCT+TGG | + | chr1.4:50992041-50992060 | None:intergenic | 50.0% | |
| CATCCATTGAGGAGGGACAA+TGG | + | chr1.4:50990212-50990231 | None:intergenic | 50.0% | |
| CATCGCTGAAGACGAGATTG+TGG | - | chr1.4:50989961-50989980 | MS.gene47379:intron | 50.0% | |
| CCAACAGTCATCCATTGAGG+AGG | + | chr1.4:50990220-50990239 | None:intergenic | 50.0% | |
| CCTCCTCAATGGATGACTGT+TGG | - | chr1.4:50990217-50990236 | MS.gene47379:intron | 50.0% | |
| CGTCTATCCGAAACTCTCTC+TGG | + | chr1.4:50992672-50992691 | None:intergenic | 50.0% | |
| GCAAATGCTCCGACATCTCT+TGG | + | chr1.4:50990890-50990909 | None:intergenic | 50.0% | |
| GCAATTGCTCTCAGGAAGAG+AGG | - | chr1.4:50990178-50990197 | MS.gene47379:intron | 50.0% | |
| GCGAAACTCCCAAGAGATGT+CGG | - | chr1.4:50990878-50990897 | MS.gene47379:intron | 50.0% | |
| TCCACATGTAGACCACCGAA+AGG | + | chr1.4:50990732-50990751 | None:intergenic | 50.0% | |
| TCCTTTCGGTGGTCTACATG+TGG | - | chr1.4:50990728-50990747 | MS.gene47379:intron | 50.0% | |
| ! | CGTGTGACGGAAAATTTGGC+TGG | - | chr1.4:50992463-50992482 | MS.gene47379:intron | 50.0% |
| !! | AACATACTCTCGGGGCATTG+TGG | + | chr1.4:50992707-50992726 | None:intergenic | 50.0% |
| !! | ACATACTCTCGGGGCATTGT+GGG | + | chr1.4:50992706-50992725 | None:intergenic | 50.0% |
| !! | AGGAGCATTGTGCCTTGGTA+TGG | + | chr1.4:50991887-50991906 | None:intergenic | 50.0% |
| !! | TGGTTAGGAGCATTGTGCCT+TGG | + | chr1.4:50991892-50991911 | None:intergenic | 50.0% |
| CCCAGACCCAGAGAGAGTTT+CGG | - | chr1.4:50992662-50992681 | MS.gene47379:intron | 55.0% | |
| CCGAAACTCTCTCTGGGTCT+GGG | + | chr1.4:50992665-50992684 | None:intergenic | 55.0% | |
| GCTCCATTGTCCCTCCTCAA+TGG | - | chr1.4:50990206-50990225 | MS.gene47379:intron | 55.0% | |
| TCCGAAACTCTCTCTGGGTC+TGG | + | chr1.4:50992666-50992685 | None:intergenic | 55.0% | |
| TCTGGGTCTGGGTTCAAGTC+TGG | + | chr1.4:50992654-50992673 | None:intergenic | 55.0% | |
| ! | CGCCGCTAGACCTTTTTGGA+TGG | - | chr1.4:50991525-50991544 | MS.gene47379:intron | 55.0% |
| ! | GTTGCGCCGCTAGACCTTTT+TGG | - | chr1.4:50991521-50991540 | MS.gene47379:intron | 55.0% |
| AGAGGGCAGGGGAGTGAGTA+AGG | + | chr1.4:50991960-50991979 | None:intergenic | 60.0% | |
| !! | GGGGCATTGTGGGCAACTTG+TGG | + | chr1.4:50992696-50992715 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 50989816 | 50993176 | 50989816 | ID=MS.gene47379 |
| chr1.4 | mRNA | 50989816 | 50993176 | 50989816 | ID=MS.gene47379.t1;Parent=MS.gene47379 |
| chr1.4 | exon | 50993129 | 50993176 | 50993129 | ID=MS.gene47379.t1.exon1;Parent=MS.gene47379.t1 |
| chr1.4 | CDS | 50993129 | 50993176 | 50993129 | ID=cds.MS.gene47379.t1;Parent=MS.gene47379.t1 |
| chr1.4 | exon | 50992965 | 50993039 | 50992965 | ID=MS.gene47379.t1.exon2;Parent=MS.gene47379.t1 |
| chr1.4 | CDS | 50992965 | 50993039 | 50992965 | ID=cds.MS.gene47379.t1;Parent=MS.gene47379.t1 |
| chr1.4 | exon | 50992754 | 50992868 | 50992754 | ID=MS.gene47379.t1.exon3;Parent=MS.gene47379.t1 |
| chr1.4 | CDS | 50992754 | 50992868 | 50992754 | ID=cds.MS.gene47379.t1;Parent=MS.gene47379.t1 |
| chr1.4 | exon | 50992043 | 50992142 | 50992043 | ID=MS.gene47379.t1.exon4;Parent=MS.gene47379.t1 |
| chr1.4 | CDS | 50992043 | 50992142 | 50992043 | ID=cds.MS.gene47379.t1;Parent=MS.gene47379.t1 |
| chr1.4 | exon | 50991921 | 50991951 | 50991921 | ID=MS.gene47379.t1.exon5;Parent=MS.gene47379.t1 |
| chr1.4 | CDS | 50991921 | 50991951 | 50991921 | ID=cds.MS.gene47379.t1;Parent=MS.gene47379.t1 |
| chr1.4 | exon | 50991739 | 50991831 | 50991739 | ID=MS.gene47379.t1.exon6;Parent=MS.gene47379.t1 |
| chr1.4 | CDS | 50991739 | 50991831 | 50991739 | ID=cds.MS.gene47379.t1;Parent=MS.gene47379.t1 |
| chr1.4 | exon | 50990273 | 50990425 | 50990273 | ID=MS.gene47379.t1.exon7;Parent=MS.gene47379.t1 |
| chr1.4 | CDS | 50990273 | 50990425 | 50990273 | ID=cds.MS.gene47379.t1;Parent=MS.gene47379.t1 |
| chr1.4 | exon | 50989816 | 50989833 | 50989816 | ID=MS.gene47379.t1.exon8;Parent=MS.gene47379.t1 |
| chr1.4 | CDS | 50989816 | 50989833 | 50989816 | ID=cds.MS.gene47379.t1;Parent=MS.gene47379.t1 |
| Gene Sequence |
| Protein sequence |
