AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene47449

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47449.t1 MTR_1g063060 100.000 390 0 0 1 390 19 408 0.0 805
MS.gene47449.t1 MTR_1g063060 100.000 390 0 0 1 390 1 390 0.0 805
MS.gene47449.t1 MTR_7g102120 94.103 390 23 0 1 390 1 390 0.0 740
MS.gene47449.t1 MTR_4g123810 88.601 386 44 0 2 387 4 389 0.0 696
MS.gene47449.t1 MTR_7g110310 86.788 386 51 0 2 387 3 388 0.0 693
MS.gene47449.t1 MTR_2g046710 88.083 386 46 0 2 387 4 389 0.0 692
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47449.t1 AT2G36880 92.564 390 29 0 1 390 1 390 0.0 733
MS.gene47449.t1 AT2G36880 92.564 390 29 0 1 390 1 390 0.0 733
MS.gene47449.t1 AT3G17390 88.114 387 46 0 1 387 1 387 0.0 696
MS.gene47449.t1 AT4G01850 87.597 387 48 0 1 387 1 387 0.0 692
MS.gene47449.t1 AT4G01850 87.597 387 48 0 1 387 1 387 0.0 692
MS.gene47449.t1 AT1G02500 87.597 387 48 0 1 387 1 387 0.0 688
MS.gene47449.t1 AT1G02500 87.597 387 48 0 1 387 1 387 0.0 688

Find 117 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTCCAGATAAGGATATTT+TGG 0.191529 1.4:-51882449 MS.gene47449:CDS
ACTGCTGCTTACGGGCATTT+TGG 0.206540 1.4:-51882337 MS.gene47449:CDS
AGCAAGAAGCCTGAGGAAAT+TGG 0.257775 1.4:-51883096 MS.gene47449:CDS
ACTAACATGGTTATGGTCTT+TGG 0.278992 1.4:-51883288 MS.gene47449:CDS
TGAACTCCTTGAGCAATATC+AGG 0.302469 1.4:+51883129 None:intergenic
GCCCGTAAGCAGCAGTCTTC+TGG 0.322457 1.4:+51882344 None:intergenic
TCACAAGAGGTGGCAAATTC+AGG 0.332737 1.4:-51882369 MS.gene47449:CDS
AAATAGTTCGGGACACTTGC+AGG 0.334020 1.4:-51883230 MS.gene47449:CDS
AGAACCAAAATATCCTTATC+TGG 0.337009 1.4:+51882445 None:intergenic
AGGATTGTGTGCACGCGAAT+AGG 0.355191 1.4:+51882877 None:intergenic
TATTGATACCTATGGTGGTT+GGG 0.358518 1.4:-51882665 MS.gene47449:CDS
TTTGTGGACACTTACAAAAC+TGG 0.364762 1.4:-51882475 MS.gene47449:CDS
CTCATAGTCCACCTTTGCCT+TGG 0.368509 1.4:+51883254 None:intergenic
GGAGTGGTGCTTACATTGTT+AGG 0.368655 1.4:-51882591 MS.gene47449:CDS
GGGACACTTGCAGGAGTATT+GGG 0.371873 1.4:-51883221 MS.gene47449:CDS
GTTGAATACAAGAATGATAA+TGG 0.375620 1.4:-51882910 MS.gene47449:CDS
ATCAATAATGATCTTCCTTC+CGG 0.379520 1.4:+51882681 None:intergenic
CATGTGCTTGCCACTAAAAT+TGG 0.379944 1.4:-51883006 MS.gene47449:CDS
CGGGACACTTGCAGGAGTAT+TGG 0.380004 1.4:-51883222 MS.gene47449:CDS
CATGGTGGAGGTGCCTTCTC+AGG 0.384431 1.4:-51882637 MS.gene47449:CDS
TTACAGATTCTGAGGTGAAT+AGG 0.390519 1.4:+51883418 None:intergenic
TGCTCGTCGTTGTATTGTGC+AGG 0.400285 1.4:-51882536 MS.gene47449:CDS
GTGCAGGTTTCTTATGCAAT+TGG 0.405905 1.4:-51882520 MS.gene47449:CDS
ACCAGAAGACTGCTGCTTAC+GGG 0.407668 1.4:-51882345 MS.gene47449:CDS
TCTTGTATTCAACGGTAACT+TGG 0.410805 1.4:+51882920 None:intergenic
AGAGCCACTTTCTGTGTTTG+TGG 0.412076 1.4:-51882491 MS.gene47449:CDS
TCAGGTAGGTTTGTGATTGG+TGG 0.413640 1.4:-51882727 MS.gene47449:CDS
GGTTGGGGTGCTCATGGTGG+AGG 0.416114 1.4:-51882649 MS.gene47449:CDS
GGATTGTGTGCACGCGAATA+GGG 0.416704 1.4:+51882878 None:intergenic
ACCTGGTCACAGATCTTGTC+GGG 0.417397 1.4:+51883384 None:intergenic
TTGTCGTCAAGGTATTTAGC+TGG 0.418579 1.4:+51882772 None:intergenic
CCTTCAGGTAGGTTTGTGAT+TGG 0.422961 1.4:-51882730 MS.gene47449:CDS
ATAAGACATGCCCATGGGTT+AGG 0.433400 1.4:-51882957 MS.gene47449:CDS
GGTGATCAAGGTCACATGTT+TGG 0.433876 1.4:-51883069 MS.gene47449:CDS
TATGGTGGTTGGGGTGCTCA+TGG 0.437298 1.4:-51882655 MS.gene47449:CDS
CTTTCTAACTTCAGTGAGCT+TGG 0.438150 1.4:+51882981 None:intergenic
GGTTGGATCCTTTCCTGAGA+AGG 0.441186 1.4:+51882624 None:intergenic
ATCTTCCATCTCAACCCTTC+AGG 0.447635 1.4:-51882745 MS.gene47449:CDS
ACCATAACTCTCTCAAGCCT+TGG 0.448191 1.4:+51882267 None:intergenic
ACAGTCTCCCATGTAAAATC+AGG 0.452392 1.4:+51882304 None:intergenic
CGTCGTGTTGAGTTGAAATG+AGG 0.453932 1.4:+51882857 None:intergenic
TCACCAGCTCCAATTTCCTC+AGG 0.463353 1.4:+51883087 None:intergenic
TGTGTGAGTGGCATTAGTTC+AGG 0.465165 1.4:+51883027 None:intergenic
CCACTCCTGTCCACCTTGGT+TGG 0.465451 1.4:+51882607 None:intergenic
TACCAGAAGACTGCTGCTTA+CGG 0.467085 1.4:-51882346 MS.gene47449:CDS
CATGGAGATGCGGGGCTCAC+CGG 0.468853 1.4:-51882700 MS.gene47449:CDS
GGACTATGAGAAAATAGTTC+GGG 0.469416 1.4:-51883241 MS.gene47449:CDS
GGTGGACCTCATGGAGATGC+GGG 0.478920 1.4:-51882709 MS.gene47449:CDS
TGGACTATGAGAAAATAGTT+CGG 0.480347 1.4:-51883242 MS.gene47449:CDS
GAAATTGGAGCTGGTGATCA+AGG 0.483468 1.4:-51883081 MS.gene47449:CDS
TGCCACCTCTTGTGAGGTCA+AGG 0.490427 1.4:+51882377 None:intergenic
AGGATCCAACCAAGGTGGAC+AGG 0.494928 1.4:-51882612 MS.gene47449:CDS
AGGTTGATAGCAATCATTCC+AGG 0.495973 1.4:+51882397 None:intergenic
TGCCATCCTTGATGCATGCT+TGG 0.499134 1.4:-51883355 MS.gene47449:CDS
AGGTATTTAGCTGGGACGAC+AGG 0.499951 1.4:+51882781 None:intergenic
AACTGGAAAGATTCCAGATA+AGG 0.500009 1.4:-51882458 MS.gene47449:CDS
CCATAACTCTCTCAAGCCTT+GGG 0.500970 1.4:+51882268 None:intergenic
GGGTTTGTGTCTGCTGATGT+TGG 0.504850 1.4:-51883201 MS.gene47449:CDS
TGCCCATGGGTTAGGCCTGA+TGG 0.510007 1.4:-51882949 MS.gene47449:CDS
CAAGGATGGCATCTGAAACC+TGG 0.510900 1.4:+51883367 None:intergenic
TTATTGATACCTATGGTGGT+TGG 0.512065 1.4:-51882666 MS.gene47449:CDS
AAGATCATTATTGATACCTA+TGG 0.514480 1.4:-51882673 MS.gene47449:CDS
GTGTCCACAAACACAGAAAG+TGG 0.522772 1.4:+51882487 None:intergenic
CTTGTATTCAACGGTAACTT+GGG 0.524167 1.4:+51882921 None:intergenic
GTAACTTGGGTCTTACCATC+AGG 0.526446 1.4:+51882934 None:intergenic
ATTGATACCTATGGTGGTTG+GGG 0.527612 1.4:-51882664 MS.gene47449:CDS
ATTATCATTCTTGTATTCAA+CGG 0.531052 1.4:+51882912 None:intergenic
GATATTGCTCAAGGAGTTCA+CGG 0.536055 1.4:-51883126 MS.gene47449:CDS
CCCCGACAAGATCTGTGACC+AGG 0.538168 1.4:-51883385 MS.gene47449:CDS
TAGTTCAGGTGTTTCGTCAG+TGG 0.542460 1.4:+51883041 None:intergenic
TTTGTGATTGGTGGACCTCA+TGG 0.544583 1.4:-51882718 MS.gene47449:CDS
TACCATCAGGCCTAACCCAT+GGG 0.547526 1.4:+51882947 None:intergenic
TGTCGTCAAGGTATTTAGCT+GGG 0.547725 1.4:+51882773 None:intergenic
ACCTACCTGAAGGGTTGAGA+TGG 0.549506 1.4:+51882740 None:intergenic
TGGTGGACCTCATGGAGATG+CGG 0.558868 1.4:-51882710 MS.gene47449:CDS
ACAAACACAGAAAGTGGCTC+TGG 0.562649 1.4:+51882493 None:intergenic
GGTGGTTGGGGTGCTCATGG+TGG 0.563645 1.4:-51882652 MS.gene47449:CDS
TGAAGGGTTGAGATGGAAGA+TGG 0.563688 1.4:+51882747 None:intergenic
AACCTGGTCACAGATCTTGT+CGG 0.563707 1.4:+51883383 None:intergenic
AAGCCTGAGGAAATTGGAGC+TGG 0.569064 1.4:-51883090 MS.gene47449:CDS
AGCACCACTCCTGTCCACCT+TGG 0.571010 1.4:+51882603 None:intergenic
CTCCAAGCATGCATCAAGGA+TGG 0.575330 1.4:+51883353 None:intergenic
ATCATTATTGATACCTATGG+TGG 0.575435 1.4:-51882670 MS.gene47449:CDS
ATGAGCACCCCAACCACCAT+AGG 0.575628 1.4:+51882657 None:intergenic
CAAGAATGATAATGGAGCCA+TGG 0.577331 1.4:-51882902 MS.gene47449:CDS
GGAAGATGGTCTTGTCGTCA+AGG 0.577435 1.4:+51882761 None:intergenic
TTACCATCAGGCCTAACCCA+TGG 0.578836 1.4:+51882946 None:intergenic
TGTGAAGATGCTCAAGCCCA+AGG 0.581845 1.4:-51882284 MS.gene47449:CDS
GAGATGCGGGGCTCACCGGA+AGG 0.589190 1.4:-51882696 MS.gene47449:CDS
ACCTTCGTTTACAGATTCTG+AGG 0.589403 1.4:+51883410 None:intergenic
TGAAATCACAACCAAGGCAA+AGG 0.590046 1.4:-51883265 MS.gene47449:CDS
CCAATCACAAACCTACCTGA+AGG 0.592190 1.4:+51882730 None:intergenic
AACCTTGACCTCACAAGAGG+TGG 0.593643 1.4:-51882379 MS.gene47449:CDS
GGAGCAAGATAAAGAGAGCA+AGG 0.594380 1.4:-51883334 MS.gene47449:CDS
AATCACAACCAAGGCAAAGG+TGG 0.598400 1.4:-51883262 MS.gene47449:CDS
TGAATTTGCCACCTCTTGTG+AGG 0.598537 1.4:+51882371 None:intergenic
CAGAGCCCTGATATTGCTCA+AGG 0.602611 1.4:-51883135 MS.gene47449:CDS
CTTGCTCCAAGCATGCATCA+AGG 0.602878 1.4:+51883349 None:intergenic
GAACTCCTTGAGCAATATCA+GGG 0.613163 1.4:+51883130 None:intergenic
GAAAGAATAAGACATGCCCA+TGG 0.616428 1.4:-51882963 MS.gene47449:CDS
TGGAGGTGCCTTCTCAGGAA+AGG 0.621106 1.4:-51882632 MS.gene47449:CDS
CAATCACAAACCTACCTGAA+GGG 0.630070 1.4:+51882731 None:intergenic
ATCAACCTTGACCTCACAAG+AGG 0.632107 1.4:-51882382 MS.gene47449:CDS
AGATTCTGAGGTGAATAGGA+AGG 0.635764 1.4:+51883422 None:intergenic
TCCATCTCAACCCTTCAGGT+AGG 0.636963 1.4:-51882741 MS.gene47449:CDS
AAAGAATAAGACATGCCCAT+GGG 0.640830 1.4:-51882962 MS.gene47449:CDS
CCAACCAAGGTGGACAGGAG+TGG 0.650759 1.4:-51882607 MS.gene47449:CDS
ACCTCAGAATCTGTAAACGA+AGG 0.651225 1.4:-51883411 MS.gene47449:CDS
GTGGACCTCATGGAGATGCG+GGG 0.667986 1.4:-51882708 MS.gene47449:CDS
GTGGCAAGCACATGTGTGAG+TGG 0.669118 1.4:+51883015 None:intergenic
CTCAGGAAAGGATCCAACCA+AGG 0.675495 1.4:-51882620 MS.gene47449:CDS
CTTTGGTGAAATCACAACCA+AGG 0.678587 1.4:-51883271 MS.gene47449:CDS
TCACTTGAGCAAGAAGCCTG+AGG 0.682617 1.4:-51883103 MS.gene47449:CDS
GTGCACGCGAATAGGGACCA+TGG 0.688328 1.4:+51882885 None:intergenic
GTGAGCCCCGCATCTCCATG+AGG 0.689929 1.4:+51882703 None:intergenic
AGGAAAGGATCCAACCAAGG+TGG 0.705983 1.4:-51882617 MS.gene47449:CDS
CCTGGTCACAGATCTTGTCG+GGG 0.713673 1.4:+51883385 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATCATTCTTGTATTCAA+CGG + chr1.4:51882799-51882818 None:intergenic 20.0%
! AAGATCATTATTGATACCTA+TGG - chr1.4:51883035-51883054 MS.gene47449:CDS 25.0%
! GTTGAATACAAGAATGATAA+TGG - chr1.4:51882798-51882817 MS.gene47449:CDS 25.0%
! TACAAAAACTAACATGGTTA+TGG - chr1.4:51882413-51882432 MS.gene47449:CDS 25.0%
AGAACCAAAATATCCTTATC+TGG + chr1.4:51883266-51883285 None:intergenic 30.0%
ATCAATAATGATCTTCCTTC+CGG + chr1.4:51883030-51883049 None:intergenic 30.0%
ATCATTATTGATACCTATGG+TGG - chr1.4:51883038-51883057 MS.gene47449:CDS 30.0%
TGGACTATGAGAAAATAGTT+CGG - chr1.4:51882466-51882485 MS.gene47449:CDS 30.0%
! GATTCCAGATAAGGATATTT+TGG - chr1.4:51883259-51883278 MS.gene47449:CDS 30.0%
!!! AACCATGTTAGTTTTTGTAC+AGG + chr1.4:51882412-51882431 None:intergenic 30.0%
!!! GGATATTTTGGTTCTGATTA+AGG - chr1.4:51883271-51883290 MS.gene47449:CDS 30.0%
!!! TTAAGGAGAATTTTGACTTC+AGG - chr1.4:51883288-51883307 MS.gene47449:CDS 30.0%
AAAGAATAAGACATGCCCAT+GGG - chr1.4:51882746-51882765 MS.gene47449:CDS 35.0%
AACTGGAAAGATTCCAGATA+AGG - chr1.4:51883250-51883269 MS.gene47449:CDS 35.0%
ACTAACATGGTTATGGTCTT+TGG - chr1.4:51882420-51882439 MS.gene47449:CDS 35.0%
CTTGTATTCAACGGTAACTT+GGG + chr1.4:51882790-51882809 None:intergenic 35.0%
GACCTGTACAAAAACTAACA+TGG - chr1.4:51882407-51882426 MS.gene47449:CDS 35.0%
GGACTATGAGAAAATAGTTC+GGG - chr1.4:51882467-51882486 MS.gene47449:CDS 35.0%
TATTGATACCTATGGTGGTT+GGG - chr1.4:51883043-51883062 MS.gene47449:CDS 35.0%
TCTTGTATTCAACGGTAACT+TGG + chr1.4:51882791-51882810 None:intergenic 35.0%
TTATTGATACCTATGGTGGT+TGG - chr1.4:51883042-51883061 MS.gene47449:CDS 35.0%
TTTGTGGACACTTACAAAAC+TGG - chr1.4:51883233-51883252 MS.gene47449:CDS 35.0%
! TGACGATCCTGATTTTACAT+GGG - chr1.4:51883397-51883416 MS.gene47449:CDS 35.0%
!! TTACAGATTCTGAGGTGAAT+AGG + chr1.4:51882293-51882312 None:intergenic 35.0%
ACAGTCTCCCATGTAAAATC+AGG + chr1.4:51883407-51883426 None:intergenic 40.0%
ACCTCAGAATCTGTAAACGA+AGG - chr1.4:51882297-51882316 MS.gene47449:CDS 40.0%
ACCTTCGTTTACAGATTCTG+AGG + chr1.4:51882301-51882320 None:intergenic 40.0%
ATTGATACCTATGGTGGTTG+GGG - chr1.4:51883044-51883063 MS.gene47449:CDS 40.0%
CAATCACAAACCTACCTGAA+GGG + chr1.4:51882980-51882999 None:intergenic 40.0%
CATGTGCTTGCCACTAAAAT+TGG - chr1.4:51882702-51882721 MS.gene47449:CDS 40.0%
CTTTCTAACTTCAGTGAGCT+TGG + chr1.4:51882730-51882749 None:intergenic 40.0%
CTTTGGTGAAATCACAACCA+AGG - chr1.4:51882437-51882456 MS.gene47449:CDS 40.0%
GAAAGAATAAGACATGCCCA+TGG - chr1.4:51882745-51882764 MS.gene47449:CDS 40.0%
GAACTCCTTGAGCAATATCA+GGG + chr1.4:51882581-51882600 None:intergenic 40.0%
GATATTGCTCAAGGAGTTCA+CGG - chr1.4:51882582-51882601 MS.gene47449:CDS 40.0%
GTGCAGGTTTCTTATGCAAT+TGG - chr1.4:51883188-51883207 MS.gene47449:CDS 40.0%
TGAAATCACAACCAAGGCAA+AGG - chr1.4:51882443-51882462 MS.gene47449:CDS 40.0%
TGAACTCCTTGAGCAATATC+AGG + chr1.4:51882582-51882601 None:intergenic 40.0%
! GTGACGATCCTGATTTTACA+TGG - chr1.4:51883396-51883415 MS.gene47449:CDS 40.0%
! TGTCGTCAAGGTATTTAGCT+GGG + chr1.4:51882938-51882957 None:intergenic 40.0%
! TTGTCGTCAAGGTATTTAGC+TGG + chr1.4:51882939-51882958 None:intergenic 40.0%
!! AGATTCTGAGGTGAATAGGA+AGG + chr1.4:51882289-51882308 None:intergenic 40.0%
!! AGGTTGATAGCAATCATTCC+AGG + chr1.4:51883314-51883333 None:intergenic 40.0%
!! CAAAAAGTGTTGTCGCTTCA+GGG - chr1.4:51883147-51883166 MS.gene47449:CDS 40.0%
!! CAAGAATGATAATGGAGCCA+TGG - chr1.4:51882806-51882825 MS.gene47449:CDS 40.0%
AAATAGTTCGGGACACTTGC+AGG - chr1.4:51882478-51882497 MS.gene47449:CDS 45.0%
AACCTGGTCACAGATCTTGT+CGG + chr1.4:51882328-51882347 None:intergenic 45.0%
AATCACAACCAAGGCAAAGG+TGG - chr1.4:51882446-51882465 MS.gene47449:CDS 45.0%
ACAAACACAGAAAGTGGCTC+TGG + chr1.4:51883218-51883237 None:intergenic 45.0%
AGCAAGAAGCCTGAGGAAAT+TGG - chr1.4:51882612-51882631 MS.gene47449:CDS 45.0%
ATAAGACATGCCCATGGGTT+AGG - chr1.4:51882751-51882770 MS.gene47449:CDS 45.0%
ATCAACCTTGACCTCACAAG+AGG - chr1.4:51883326-51883345 MS.gene47449:CDS 45.0%
ATCTTCCATCTCAACCCTTC+AGG - chr1.4:51882963-51882982 MS.gene47449:CDS 45.0%
CCAATCACAAACCTACCTGA+AGG + chr1.4:51882981-51883000 None:intergenic 45.0%
CCTTCAGGTAGGTTTGTGAT+TGG - chr1.4:51882978-51882997 MS.gene47449:CDS 45.0%
GAAATTGGAGCTGGTGATCA+AGG - chr1.4:51882627-51882646 MS.gene47449:CDS 45.0%
GGAGCAAGATAAAGAGAGCA+AGG - chr1.4:51882374-51882393 MS.gene47449:CDS 45.0%
GGAGTGGTGCTTACATTGTT+AGG - chr1.4:51883117-51883136 MS.gene47449:CDS 45.0%
GGTGATCAAGGTCACATGTT+TGG - chr1.4:51882639-51882658 MS.gene47449:CDS 45.0%
GTAACTTGGGTCTTACCATC+AGG + chr1.4:51882777-51882796 None:intergenic 45.0%
GTGTCCACAAACACAGAAAG+TGG + chr1.4:51883224-51883243 None:intergenic 45.0%
TAGTTCAGGTGTTTCGTCAG+TGG + chr1.4:51882670-51882689 None:intergenic 45.0%
TCACAAGAGGTGGCAAATTC+AGG - chr1.4:51883339-51883358 MS.gene47449:CDS 45.0%
TCAGGTAGGTTTGTGATTGG+TGG - chr1.4:51882981-51883000 MS.gene47449:CDS 45.0%
TGAAGGGTTGAGATGGAAGA+TGG + chr1.4:51882964-51882983 None:intergenic 45.0%
TGAATTTGCCACCTCTTGTG+AGG + chr1.4:51883340-51883359 None:intergenic 45.0%
TGTGTGAGTGGCATTAGTTC+AGG + chr1.4:51882684-51882703 None:intergenic 45.0%
! AGAGCCACTTTCTGTGTTTG+TGG - chr1.4:51883217-51883236 MS.gene47449:CDS 45.0%
! AGTTTTTGTACAGGTCTCGC+AGG + chr1.4:51882403-51882422 None:intergenic 45.0%
! GAGCTTGGCACCAATTTTAG+TGG + chr1.4:51882715-51882734 None:intergenic 45.0%
! TACCAGAAGACTGCTGCTTA+CGG - chr1.4:51883362-51883381 MS.gene47449:CDS 45.0%
! TTTGTGATTGGTGGACCTCA+TGG - chr1.4:51882990-51883009 MS.gene47449:CDS 45.0%
!! CGTCGTGTTGAGTTGAAATG+AGG + chr1.4:51882854-51882873 None:intergenic 45.0%
!! GCAAAAAGTGTTGTCGCTTC+AGG - chr1.4:51883146-51883165 MS.gene47449:CDS 45.0%
!!! GAGAATTTTGACTTCAGGCC+TGG - chr1.4:51883293-51883312 MS.gene47449:CDS 45.0%
AACCTTGACCTCACAAGAGG+TGG - chr1.4:51883329-51883348 MS.gene47449:CDS 50.0%
AAGCCTGAGGAAATTGGAGC+TGG - chr1.4:51882618-51882637 MS.gene47449:CDS 50.0%
ACCTACCTGAAGGGTTGAGA+TGG + chr1.4:51882971-51882990 None:intergenic 50.0%
ACCTGGTCACAGATCTTGTC+GGG + chr1.4:51882327-51882346 None:intergenic 50.0%
AGGAAAGGATCCAACCAAGG+TGG - chr1.4:51883091-51883110 MS.gene47449:CDS 50.0%
AGGATTGTGTGCACGCGAAT+AGG + chr1.4:51882834-51882853 None:intergenic 50.0%
AGGTATTTAGCTGGGACGAC+AGG + chr1.4:51882930-51882949 None:intergenic 50.0%
CAGAGCCCTGATATTGCTCA+AGG - chr1.4:51882573-51882592 MS.gene47449:CDS 50.0%
CTCAGGAAAGGATCCAACCA+AGG - chr1.4:51883088-51883107 MS.gene47449:CDS 50.0%
CTCATAGTCCACCTTTGCCT+TGG + chr1.4:51882457-51882476 None:intergenic 50.0%
CTCCAAGCATGCATCAAGGA+TGG + chr1.4:51882358-51882377 None:intergenic 50.0%
CTTGCTCCAAGCATGCATCA+AGG + chr1.4:51882362-51882381 None:intergenic 50.0%
GGATTGTGTGCACGCGAATA+GGG + chr1.4:51882833-51882852 None:intergenic 50.0%
GGGTTTGTGTCTGCTGATGT+TGG - chr1.4:51882507-51882526 MS.gene47449:CDS 50.0%
GGTTGGATCCTTTCCTGAGA+AGG + chr1.4:51883087-51883106 None:intergenic 50.0%
TACCATCAGGCCTAACCCAT+GGG + chr1.4:51882764-51882783 None:intergenic 50.0%
TCACCAGCTCCAATTTCCTC+AGG + chr1.4:51882624-51882643 None:intergenic 50.0%
TCACTTGAGCAAGAAGCCTG+AGG - chr1.4:51882605-51882624 MS.gene47449:CDS 50.0%
TCCATCTCAACCCTTCAGGT+AGG - chr1.4:51882967-51882986 MS.gene47449:CDS 50.0%
TGCCATCCTTGATGCATGCT+TGG - chr1.4:51882353-51882372 MS.gene47449:CDS 50.0%
TGCTCGTCGTTGTATTGTGC+AGG - chr1.4:51883172-51883191 MS.gene47449:CDS 50.0%
TGTGAAGATGCTCAAGCCCA+AGG - chr1.4:51883424-51883443 MS.gene47449:CDS 50.0%
TTACCATCAGGCCTAACCCA+TGG + chr1.4:51882765-51882784 None:intergenic 50.0%
! ACCAGAAGACTGCTGCTTAC+GGG - chr1.4:51883363-51883382 MS.gene47449:CDS 50.0%
! CAAGGATGGCATCTGAAACC+TGG + chr1.4:51882344-51882363 None:intergenic 50.0%
!! ACTGCTGCTTACGGGCATTT+TGG - chr1.4:51883371-51883390 MS.gene47449:CDS 50.0%
!! GGAAGATGGTCTTGTCGTCA+AGG + chr1.4:51882950-51882969 None:intergenic 50.0%
!! GGGACACTTGCAGGAGTATT+GGG - chr1.4:51882487-51882506 MS.gene47449:CDS 50.0%
AGGATCCAACCAAGGTGGAC+AGG - chr1.4:51883096-51883115 MS.gene47449:CDS 55.0%
ATGAGCACCCCAACCACCAT+AGG + chr1.4:51883054-51883073 None:intergenic 55.0%
CCTGGTCACAGATCTTGTCG+GGG + chr1.4:51882326-51882345 None:intergenic 55.0%
GTGGCAAGCACATGTGTGAG+TGG + chr1.4:51882696-51882715 None:intergenic 55.0%
TGCCACCTCTTGTGAGGTCA+AGG + chr1.4:51883334-51883353 None:intergenic 55.0%
! CGGGACACTTGCAGGAGTAT+TGG - chr1.4:51882486-51882505 MS.gene47449:CDS 55.0%
! TATGGTGGTTGGGGTGCTCA+TGG - chr1.4:51883053-51883072 MS.gene47449:CDS 55.0%
! TGGTGGACCTCATGGAGATG+CGG - chr1.4:51882998-51883017 MS.gene47449:CDS 55.0%
!! TGGAGGTGCCTTCTCAGGAA+AGG - chr1.4:51883076-51883095 MS.gene47449:CDS 55.0%
AGCACCACTCCTGTCCACCT+TGG + chr1.4:51883108-51883127 None:intergenic 60.0%
CCAACCAAGGTGGACAGGAG+TGG - chr1.4:51883101-51883120 MS.gene47449:CDS 60.0%
CCACTCCTGTCCACCTTGGT+TGG + chr1.4:51883104-51883123 None:intergenic 60.0%
CCCCGACAAGATCTGTGACC+AGG - chr1.4:51882323-51882342 MS.gene47449:CDS 60.0%
GCCCGTAAGCAGCAGTCTTC+TGG + chr1.4:51883367-51883386 None:intergenic 60.0%
GGTGGACCTCATGGAGATGC+GGG - chr1.4:51882999-51883018 MS.gene47449:CDS 60.0%
GTGCACGCGAATAGGGACCA+TGG + chr1.4:51882826-51882845 None:intergenic 60.0%
GTGGACCTCATGGAGATGCG+GGG - chr1.4:51883000-51883019 MS.gene47449:CDS 60.0%
!! CATGGTGGAGGTGCCTTCTC+AGG - chr1.4:51883071-51883090 MS.gene47449:CDS 60.0%
!! TGCCCATGGGTTAGGCCTGA+TGG - chr1.4:51882759-51882778 MS.gene47449:CDS 60.0%
CATGGAGATGCGGGGCTCAC+CGG - chr1.4:51883008-51883027 MS.gene47449:CDS 65.0%
GTGAGCCCCGCATCTCCATG+AGG + chr1.4:51883008-51883027 None:intergenic 65.0%
! GGTGGTTGGGGTGCTCATGG+TGG - chr1.4:51883056-51883075 MS.gene47449:CDS 65.0%
! GGTTGGGGTGCTCATGGTGG+AGG - chr1.4:51883059-51883078 MS.gene47449:CDS 65.0%
GAGATGCGGGGCTCACCGGA+AGG - chr1.4:51883012-51883031 MS.gene47449:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 51882279 51883451 51882279 ID=MS.gene47449
chr1.4 mRNA 51882279 51883451 51882279 ID=MS.gene47449.t1;Parent=MS.gene47449
chr1.4 exon 51882279 51883451 51882279 ID=MS.gene47449.t1.exon1;Parent=MS.gene47449.t1
chr1.4 CDS 51882279 51883451 51882279 ID=cds.MS.gene47449.t1;Parent=MS.gene47449.t1
Gene Sequence

>MS.gene47449

ATGGATACCTTCCTATTCACCTCAGAATCTGTAAACGAAGGTCACCCCGACAAGATCTGTGACCAGGTTTCAGATGCCATCCTTGATGCATGCTTGGAGCAAGATAAAGAGAGCAAGGTTGCCTGCGAGACCTGTACAAAAACTAACATGGTTATGGTCTTTGGTGAAATCACAACCAAGGCAAAGGTGGACTATGAGAAAATAGTTCGGGACACTTGCAGGAGTATTGGGTTTGTGTCTGCTGATGTTGGTCTTGATGCTGACAAATGCAATGTTCTCGTCAACATTGAGCAACAGAGCCCTGATATTGCTCAAGGAGTTCACGGTCACTTGAGCAAGAAGCCTGAGGAAATTGGAGCTGGTGATCAAGGTCACATGTTTGGCTATGCCACTGACGAAACACCTGAACTAATGCCACTCACACATGTGCTTGCCACTAAAATTGGTGCCAAGCTCACTGAAGTTAGAAAGAATAAGACATGCCCATGGGTTAGGCCTGATGGTAAGACCCAAGTTACCGTTGAATACAAGAATGATAATGGAGCCATGGTCCCTATTCGCGTGCACACAATCCTCATTTCAACTCAACACGACGAAACTGTCACAAATGAAAAGATTGCTCAAGATTTGAAAGAGCATGTTATTAAACCTGTCGTCCCAGCTAAATACCTTGACGACAAGACCATCTTCCATCTCAACCCTTCAGGTAGGTTTGTGATTGGTGGACCTCATGGAGATGCGGGGCTCACCGGAAGGAAGATCATTATTGATACCTATGGTGGTTGGGGTGCTCATGGTGGAGGTGCCTTCTCAGGAAAGGATCCAACCAAGGTGGACAGGAGTGGTGCTTACATTGTTAGGCAAGCTGCAAAAAGTGTTGTCGCTTCAGGGCTTGCTCGTCGTTGTATTGTGCAGGTTTCTTATGCAATTGGAGTGCCAGAGCCACTTTCTGTGTTTGTGGACACTTACAAAACTGGAAAGATTCCAGATAAGGATATTTTGGTTCTGATTAAGGAGAATTTTGACTTCAGGCCTGGAATGATTGCTATCAACCTTGACCTCACAAGAGGTGGCAAATTCAGGTACCAGAAGACTGCTGCTTACGGGCATTTTGGACGTGACGATCCTGATTTTACATGGGAGACTGTGAAGATGCTCAAGCCCAAGGCTTGA
Protein sequence

>MS.gene47449.t1

MDTFLFTSESVNEGHPDKICDQVSDAILDACLEQDKESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSADVGLDADKCNVLVNIEQQSPDIAQGVHGHLSKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKIGAKLTEVRKNKTCPWVRPDGKTQVTVEYKNDNGAMVPIRVHTILISTQHDETVTNEKIAQDLKEHVIKPVVPAKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCIVQVSYAIGVPEPLSVFVDTYKTGKIPDKDILVLIKENFDFRPGMIAINLDLTRGGKFRYQKTAAYGHFGRDDPDFTWETVKMLKPKA