Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47555.t1 | XP_013456903.1 | 93.2 | 250 | 17 | 0 | 1 | 250 | 1 | 250 | 1.10E-132 | 482.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47555.t1 | Q66JD1 | 30.5 | 203 | 128 | 3 | 55 | 245 | 80 | 281 | 4.1e-16 | 86.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47555.t1 | A0A072UME8 | 93.2 | 250 | 17 | 0 | 1 | 250 | 1 | 250 | 7.7e-133 | 482.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene98228 | MS.gene47555 | PPI |
| MS.gene47555 | MS.gene08126 | PPI |
| MS.gene47555 | MS.gene98229 | PPI |
| MS.gene20081 | MS.gene47555 | PPI |
| MS.gene47555 | MS.gene96480 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47555.t1 | MTR_4g087955 | 93.200 | 250 | 17 | 0 | 1 | 250 | 1 | 250 | 4.40e-178 | 489 |
| MS.gene47555.t1 | MTR_1g097870 | 58.416 | 101 | 24 | 2 | 150 | 250 | 62 | 144 | 3.62e-31 | 112 |
| MS.gene47555.t1 | MTR_1g097880 | 51.064 | 94 | 28 | 4 | 36 | 129 | 2 | 77 | 4.99e-19 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47555.t1 | AT2G34050 | 73.206 | 209 | 56 | 0 | 42 | 250 | 40 | 248 | 5.30e-118 | 337 |
Find 56 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGCGGTTGATGGAATTTC+TGG | 0.191016 | 4.3:-25447103 | None:intergenic |
| TATCTTCAACCTCCAGAATT+TGG | 0.194257 | 4.3:+25446988 | MS.gene47555:CDS |
| ATTGAAAATGGTTACAAAAT+AGG | 0.236464 | 4.3:-25449703 | None:intergenic |
| TGCTATGGTTCTCCAAATTC+TGG | 0.304753 | 4.3:-25447000 | None:intergenic |
| CTGAAAATATCACTTCCATT+TGG | 0.350306 | 4.3:+25447258 | MS.gene47555:CDS |
| TGCAGGGGAGTTGCGGTTGA+TGG | 0.354027 | 4.3:-25447112 | None:intergenic |
| TGAAAATATCACTTCCATTT+GGG | 0.358159 | 4.3:+25447259 | MS.gene47555:CDS |
| ACCCCATTTCAGAAAATTGC+AGG | 0.375367 | 4.3:-25447129 | None:intergenic |
| TCCAAGTGAATTTGAGTTCA+AGG | 0.383385 | 4.3:+25449657 | MS.gene47555:CDS |
| CTCCGAGTCAGTCAGCTTGC+TGG | 0.395915 | 4.3:-25449554 | None:intergenic |
| AGCAAGTCTTTATCACTTGC+TGG | 0.405466 | 4.3:+25447632 | MS.gene47555:CDS |
| TCCTTTGCAACTCAAGCCAT+TGG | 0.422997 | 4.3:+25447196 | MS.gene47555:CDS |
| CAGAAACTGTTGTGAAAGAA+TGG | 0.433681 | 4.3:-25447067 | None:intergenic |
| ACAAAGGAATGACAAAATAT+CGG | 0.436244 | 4.3:-25447756 | None:intergenic |
| CACATAGGTAGAGGTCATAT+TGG | 0.436318 | 4.3:+25447597 | MS.gene47555:CDS |
| ATTCCTTTGTGGAGGGGAAG+TGG | 0.451596 | 4.3:+25447769 | MS.gene47555:CDS |
| CTGTGTAAAATGATACAGTA+TGG | 0.451610 | 4.3:-25449480 | None:intergenic |
| TTTCTGAAATGGGGTTCGCT+TGG | 0.455854 | 4.3:+25447137 | MS.gene47555:CDS |
| TATATAACAATGTTTGTTCA+AGG | 0.456491 | 4.3:+25447793 | MS.gene47555:CDS |
| TGACTGACTCGGAGGCGAAA+TGG | 0.460162 | 4.3:+25449563 | MS.gene47555:CDS |
| TATTGAGAGGCTCAAGGATC+GGG | 0.463811 | 4.3:+25447232 | MS.gene47555:CDS |
| TACTGGTCTTGAAGATTACA+AGG | 0.470857 | 4.3:+25449432 | MS.gene47555:CDS |
| ATTTGCAGAGAGCAAGGACT+TGG | 0.474512 | 4.3:+25449504 | MS.gene47555:CDS |
| AGACATTACATCATCCCAAA+TGG | 0.489838 | 4.3:-25447273 | None:intergenic |
| TCCTTGAACTCAAATTCACT+TGG | 0.494816 | 4.3:-25449658 | None:intergenic |
| GGGGTTCGCTTGGATTCTGC+AGG | 0.497969 | 4.3:+25447147 | MS.gene47555:CDS |
| TTGCGGTTGATGGAATTTCT+GGG | 0.509138 | 4.3:-25447102 | None:intergenic |
| TTTCAGTATCACATAGGTAG+AGG | 0.509550 | 4.3:+25447588 | MS.gene47555:intron |
| CACAGAATTTGCAGAGAGCA+AGG | 0.512541 | 4.3:+25449498 | MS.gene47555:CDS |
| GTAAAATGATACAGTATGGT+AGG | 0.513265 | 4.3:-25449476 | None:intergenic |
| AGAAAATTGCAGGGGAGTTG+CGG | 0.514104 | 4.3:-25447119 | None:intergenic |
| TCCAATGGCTTGAGTTGCAA+AGG | 0.530974 | 4.3:-25447197 | None:intergenic |
| AGAAACTGTTGTGAAAGAAT+GGG | 0.537123 | 4.3:-25447066 | None:intergenic |
| CTCGGAGGCGAAATGGCTTG+TGG | 0.552401 | 4.3:+25449570 | MS.gene47555:CDS |
| AGGACTTGGTACTGATCCGT+GGG | 0.562824 | 4.3:+25449518 | MS.gene47555:CDS |
| TAAAATGATACAGTATGGTA+GGG | 0.565782 | 4.3:-25449475 | None:intergenic |
| TTTGTCATTCCTTTGTGGAG+GGG | 0.566411 | 4.3:+25447763 | MS.gene47555:CDS |
| ATATTGAGAGGCTCAAGGAT+CGG | 0.568445 | 4.3:+25447231 | MS.gene47555:CDS |
| CCCCATTTCAGAAAATTGCA+GGG | 0.572888 | 4.3:-25447128 | None:intergenic |
| AGGACGTCAAGATTCGCTAC+TGG | 0.579599 | 4.3:+25447167 | MS.gene47555:CDS |
| TACCAGCAAGCTGACTGACT+CGG | 0.584954 | 4.3:+25449552 | MS.gene47555:CDS |
| CGTAGATATTGAGAGGCTCA+AGG | 0.587957 | 4.3:+25447226 | MS.gene47555:CDS |
| TGGAGCATAGAGCTAAAGAA+TGG | 0.597620 | 4.3:+25447652 | MS.gene47555:CDS |
| ATTCTATCGTAGATATTGAG+AGG | 0.607771 | 4.3:+25447219 | MS.gene47555:CDS |
| AAGGACTTGGTACTGATCCG+TGG | 0.611446 | 4.3:+25449517 | MS.gene47555:CDS |
| TAGGCATGTTCAATGCTCGC+AGG | 0.614925 | 4.3:-25449684 | None:intergenic |
| CTTGAAGATTACAAGGCTAG+AGG | 0.618380 | 4.3:+25449439 | MS.gene47555:CDS |
| ATATCTACGATAGAATCCAA+TGG | 0.618401 | 4.3:-25447212 | None:intergenic |
| GAATTTCTGGGAAGTTGCTG+CGG | 0.624275 | 4.3:-25447090 | None:intergenic |
| TATGGTTCTCCAAATTCTGG+AGG | 0.630186 | 4.3:-25446997 | None:intergenic |
| CCCATTTCAGAAAATTGCAG+GGG | 0.636308 | 4.3:-25447127 | None:intergenic |
| TAACCACTTCCCCTCCACAA+AGG | 0.668270 | 4.3:-25447772 | None:intergenic |
| CAGCAAGCTGACTGACTCGG+AGG | 0.679284 | 4.3:+25449555 | MS.gene47555:CDS |
| GTTGTGAAAGAATGGGCATG+AGG | 0.724603 | 4.3:-25447059 | None:intergenic |
| TGGTAAATACAACATCCCCA+CGG | 0.737738 | 4.3:-25449534 | None:intergenic |
| GGACTTGGTACTGATCCGTG+GGG | 0.769538 | 4.3:+25449519 | MS.gene47555:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAGGAAAGTAAAAAAA+AGG | + | chr4.3:25448060-25448079 | MS.gene47555:intron | 15.0% |
| !! | ACAACTTAAAACAAAAAAAT+TGG | - | chr4.3:25449004-25449023 | None:intergenic | 15.0% |
| !! | TAATTATATCTTGAAACAAT+TGG | + | chr4.3:25449175-25449194 | MS.gene47555:intron | 15.0% |
| !!! | CTTAGTTTTTAACATTTTTA+TGG | + | chr4.3:25449120-25449139 | MS.gene47555:intron | 15.0% |
| !!! | TAAATTTGAAGTAAAAATGT+TGG | + | chr4.3:25448646-25448665 | MS.gene47555:intron | 15.0% |
| !! | AAAATGTTAAAAACTAAGCA+TGG | - | chr4.3:25449118-25449137 | None:intergenic | 20.0% |
| !! | ATATTCCAAAATGATCTTAT+GGG | + | chr4.3:25448438-25448457 | MS.gene47555:intron | 20.0% |
| !! | TAAAACAAAAAAATTGGTAC+TGG | - | chr4.3:25448998-25449017 | None:intergenic | 20.0% |
| !! | TATATAACAATGTTTGTTCA+AGG | + | chr4.3:25447793-25447812 | MS.gene47555:CDS | 20.0% |
| !! | TATTGTTTACAAATGTTGAT+AGG | + | chr4.3:25447350-25447369 | MS.gene47555:intron | 20.0% |
| !! | TGGATTAAAATATTTCAATC+AGG | + | chr4.3:25448666-25448685 | MS.gene47555:intron | 20.0% |
| !! | TTGTATCTGTAAGAATATTA+GGG | - | chr4.3:25448333-25448352 | None:intergenic | 20.0% |
| !!! | AATTTTTATTGGCAACTATA+GGG | + | chr4.3:25448965-25448984 | MS.gene47555:intron | 20.0% |
| !!! | ATATTTTACATAACCTATCA+TGG | - | chr4.3:25447410-25447429 | None:intergenic | 20.0% |
| !!! | ATTTAACTTTAACAAAGAAG+GGG | + | chr4.3:25448566-25448585 | MS.gene47555:intron | 20.0% |
| !!! | CATTTAACTTTAACAAAGAA+GGG | + | chr4.3:25448565-25448584 | MS.gene47555:intron | 20.0% |
| !!! | GTTTTAAAATTCTCATTTCT+GGG | - | chr4.3:25448821-25448840 | None:intergenic | 20.0% |
| !!! | TCATTTAACTTTAACAAAGA+AGG | + | chr4.3:25448564-25448583 | MS.gene47555:intron | 20.0% |
| !!! | TGTTTTAAAATTCTCATTTC+TGG | - | chr4.3:25448822-25448841 | None:intergenic | 20.0% |
| !!! | TTGTTGTTAACTATATAACT+TGG | + | chr4.3:25447557-25447576 | MS.gene47555:intron | 20.0% |
| ! | AAAATAAAAATCACTGTAGC+AGG | + | chr4.3:25448892-25448911 | MS.gene47555:intron | 25.0% |
| ! | AAACTTTAACTGATAATAGC+CGG | - | chr4.3:25448749-25448768 | None:intergenic | 25.0% |
| ! | AAGGAAATTGTTTATGTTGT+AGG | + | chr4.3:25448089-25448108 | MS.gene47555:intron | 25.0% |
| ! | AAGTACTTCACAAAGTTTAT+TGG | - | chr4.3:25448227-25448246 | None:intergenic | 25.0% |
| ! | AATTTATTTGAGTCCATGAT+AGG | + | chr4.3:25447394-25447413 | MS.gene47555:intron | 25.0% |
| ! | ACAAAGGAATGACAAAATAT+CGG | - | chr4.3:25447759-25447778 | None:intergenic | 25.0% |
| ! | ACATAAACAATTTCCTTGAA+TGG | - | chr4.3:25448086-25448105 | None:intergenic | 25.0% |
| ! | ACCCATATTTAAATGGAAAA+AGG | - | chr4.3:25447930-25447949 | None:intergenic | 25.0% |
| ! | AGAAATTGAAAAGTTGAAGT+GGG | + | chr4.3:25448033-25448052 | MS.gene47555:intron | 25.0% |
| ! | AGGAAATTGTTTATGTTGTA+GGG | + | chr4.3:25448090-25448109 | MS.gene47555:intron | 25.0% |
| ! | AGTATTGTTAGTATTATGCT+AGG | + | chr4.3:25447963-25447982 | MS.gene47555:intron | 25.0% |
| ! | ATACAATTACCAAAGAGAAA+AGG | - | chr4.3:25447333-25447352 | None:intergenic | 25.0% |
| ! | ATACTAACAATACTAACATC+TGG | - | chr4.3:25447957-25447976 | None:intergenic | 25.0% |
| ! | ATTTGAATAAATGACAAGAG+AGG | - | chr4.3:25447834-25447853 | None:intergenic | 25.0% |
| ! | CATATTCCAAAATGATCTTA+TGG | + | chr4.3:25448437-25448456 | MS.gene47555:intron | 25.0% |
| ! | CCCATATTTAAATGGAAAAA+GGG | - | chr4.3:25447929-25447948 | None:intergenic | 25.0% |
| ! | CTATAGTTGCCAATAAAAAT+TGG | - | chr4.3:25448966-25448985 | None:intergenic | 25.0% |
| ! | CTTGTATCTGTAAGAATATT+AGG | - | chr4.3:25448334-25448353 | None:intergenic | 25.0% |
| ! | GTATTGTTAGTATTATGCTA+GGG | + | chr4.3:25447964-25447983 | MS.gene47555:intron | 25.0% |
| ! | TAAAATGATACAGTATGGTA+GGG | - | chr4.3:25449478-25449497 | None:intergenic | 25.0% |
| ! | TATCTTGAAACAATTGGAAA+TGG | + | chr4.3:25449181-25449200 | MS.gene47555:intron | 25.0% |
| ! | TATTCCAAAATGATCTTATG+GGG | + | chr4.3:25448439-25448458 | MS.gene47555:intron | 25.0% |
| ! | TATTGTTAGTATTATGCTAG+GGG | + | chr4.3:25447965-25447984 | MS.gene47555:intron | 25.0% |
| ! | TCCAAAAAATATGTACCATT+AGG | - | chr4.3:25449036-25449055 | None:intergenic | 25.0% |
| ! | TGAAAATATCACTTCCATTT+GGG | + | chr4.3:25447259-25447278 | MS.gene47555:CDS | 25.0% |
| ! | TTATATCATATTGAGATCCA+CGG | + | chr4.3:25448480-25448499 | MS.gene47555:intron | 25.0% |
| ! | TTTGAATAAATGACAAGAGA+GGG | - | chr4.3:25447833-25447852 | None:intergenic | 25.0% |
| !! | ACCCTTTTTCCATTTAAATA+TGG | + | chr4.3:25447925-25447944 | MS.gene47555:intron | 25.0% |
| !! | AGTTGTTTCATATTTCCTAA+TGG | + | chr4.3:25449018-25449037 | MS.gene47555:intron | 25.0% |
| !! | CAATTTTTATTGGCAACTAT+AGG | + | chr4.3:25448964-25448983 | MS.gene47555:intron | 25.0% |
| !! | CCCTTTTTCCATTTAAATAT+GGG | + | chr4.3:25447926-25447945 | MS.gene47555:intron | 25.0% |
| !! | CTACAAGTTATTTAACTTCA+AGG | - | chr4.3:25448723-25448742 | None:intergenic | 25.0% |
| !! | TTCTTTATTCCTTTTCTCTT+TGG | + | chr4.3:25447321-25447340 | MS.gene47555:intron | 25.0% |
| !! | TTTTAAACCTGCTATCATAT+TGG | - | chr4.3:25449151-25449170 | None:intergenic | 25.0% |
| !!! | CTTTTTATTTGAATGATGTG+AGG | + | chr4.3:25449605-25449624 | MS.gene47555:CDS | 25.0% |
| !!! | GTTTTTTTTCAGTATCACAT+AGG | + | chr4.3:25447582-25447601 | MS.gene47555:intron | 25.0% |
| !!! | TCAAATTTTAGTTTTCCTTC+AGG | + | chr4.3:25448364-25448383 | MS.gene47555:intron | 25.0% |
| !!! | TCCTAATGGTACATATTTTT+TGG | + | chr4.3:25449032-25449051 | MS.gene47555:intron | 25.0% |
| AAACTGTTCAAACTTCAAAG+TGG | + | chr4.3:25448775-25448794 | MS.gene47555:intron | 30.0% | |
| ACAAAGTTTATTGGTAGACA+CGG | - | chr4.3:25448218-25448237 | None:intergenic | 30.0% | |
| AGAAACTGTTGTGAAAGAAT+GGG | - | chr4.3:25447069-25447088 | None:intergenic | 30.0% | |
| AGTAAAAAAAAGGCCATTCA+AGG | + | chr4.3:25448070-25448089 | MS.gene47555:intron | 30.0% | |
| ATATCTACGATAGAATCCAA+TGG | - | chr4.3:25447215-25447234 | None:intergenic | 30.0% | |
| ATATTTCAATCAGGAACACA+AGG | + | chr4.3:25448675-25448694 | MS.gene47555:intron | 30.0% | |
| ATTCTATCGTAGATATTGAG+AGG | + | chr4.3:25447219-25447238 | MS.gene47555:CDS | 30.0% | |
| CTGAAAATATCACTTCCATT+TGG | + | chr4.3:25447258-25447277 | MS.gene47555:CDS | 30.0% | |
| CTGTGTAAAATGATACAGTA+TGG | - | chr4.3:25449483-25449502 | None:intergenic | 30.0% | |
| GAGAAATTGAAAAGTTGAAG+TGG | + | chr4.3:25448032-25448051 | MS.gene47555:intron | 30.0% | |
| GTAAAATGATACAGTATGGT+AGG | - | chr4.3:25449479-25449498 | None:intergenic | 30.0% | |
| GTTATCTTCAATGTGACTAT+GGG | + | chr4.3:25448933-25448952 | MS.gene47555:intron | 30.0% | |
| TAAAACATCAACAAGCCTAA+AGG | + | chr4.3:25448835-25448854 | MS.gene47555:intron | 30.0% | |
| TTCTATATATCTGATCCTGA+AGG | - | chr4.3:25448382-25448401 | None:intergenic | 30.0% | |
| ! | CAAATGGAAGTGATATTTTC+AGG | - | chr4.3:25447260-25447279 | None:intergenic | 30.0% |
| ! | GATATTTTGTCATTCCTTTG+TGG | + | chr4.3:25447758-25447777 | MS.gene47555:CDS | 30.0% |
| ! | GTTAAATAACTTGTAGAGTC+CGG | + | chr4.3:25448727-25448746 | MS.gene47555:intron | 30.0% |
| ! | TGATAGGTAAAAAAGGCTTT+TGG | - | chr4.3:25449250-25449269 | None:intergenic | 30.0% |
| !! | CGAGTTTTGATAGGTAAAAA+AGG | - | chr4.3:25449257-25449276 | None:intergenic | 30.0% |
| !! | GTTGATTGTCTATGTTTTGA+TGG | + | chr4.3:25447506-25447525 | MS.gene47555:intron | 30.0% |
| !!! | GAAGATTGAGATGTTTTTTC+TGG | - | chr4.3:25447033-25447052 | None:intergenic | 30.0% |
| AAAAATCTCAAGACATTCCG+TGG | - | chr4.3:25448500-25448519 | None:intergenic | 35.0% | |
| AAAGTGGCCAATGTCAAAAA+TGG | + | chr4.3:25448791-25448810 | MS.gene47555:intron | 35.0% | |
| AATTGAAAAGTTGAAGTGGG+TGG | + | chr4.3:25448036-25448055 | MS.gene47555:intron | 35.0% | |
| AGACATTACATCATCCCAAA+TGG | - | chr4.3:25447276-25447295 | None:intergenic | 35.0% | |
| AGTCACATTGAAGATAACCA+AGG | - | chr4.3:25448931-25448950 | None:intergenic | 35.0% | |
| AGTTGCCAATAAAAATTGGC+AGG | - | chr4.3:25448962-25448981 | None:intergenic | 35.0% | |
| ATTGAAAAGTTGAAGTGGGT+GGG | + | chr4.3:25448037-25448056 | MS.gene47555:intron | 35.0% | |
| CAAAGTTTATTGGTAGACAC+GGG | - | chr4.3:25448217-25448236 | None:intergenic | 35.0% | |
| CAGAAACTGTTGTGAAAGAA+TGG | - | chr4.3:25447070-25447089 | None:intergenic | 35.0% | |
| CAGGATCAGATATATAGAAC+TGG | + | chr4.3:25448383-25448402 | MS.gene47555:intron | 35.0% | |
| GGTTATCTTCAATGTGACTA+TGG | + | chr4.3:25448932-25448951 | MS.gene47555:intron | 35.0% | |
| GGTTTACATCTCAACTATCA+AGG | - | chr4.3:25449229-25449248 | None:intergenic | 35.0% | |
| GTTACATGGAAAAGAGAAAG+CGG | + | chr4.3:25448112-25448131 | MS.gene47555:intron | 35.0% | |
| GTTTATGTTGTAGGGTTACA+TGG | + | chr4.3:25448098-25448117 | MS.gene47555:intron | 35.0% | |
| TATACTACCCATATCCAAGA+AGG | - | chr4.3:25448009-25448028 | None:intergenic | 35.0% | |
| TATCTTCAACCTCCAGAATT+TGG | + | chr4.3:25446988-25447007 | MS.gene47555:CDS | 35.0% | |
| TCCTTGAACTCAAATTCACT+TGG | - | chr4.3:25449661-25449680 | None:intergenic | 35.0% | |
| TGGCGTTACCCATATTTAAA+TGG | - | chr4.3:25447937-25447956 | None:intergenic | 35.0% | |
| TTACATGGAAAAGAGAAAGC+GGG | + | chr4.3:25448113-25448132 | MS.gene47555:intron | 35.0% | |
| TTTCAGTATCACATAGGTAG+AGG | + | chr4.3:25447588-25447607 | MS.gene47555:intron | 35.0% | |
| ! | ATTTTGTCATTCCTTTGTGG+AGG | + | chr4.3:25447761-25447780 | MS.gene47555:CDS | 35.0% |
| ! | GGTGTTGTATGCTAAATAGA+TGG | - | chr4.3:25448312-25448331 | None:intergenic | 35.0% |
| ! | GGTTTCCTGCCAATTTTTAT+TGG | + | chr4.3:25448954-25448973 | MS.gene47555:intron | 35.0% |
| ! | TCCAAGTGAATTTGAGTTCA+AGG | + | chr4.3:25449657-25449676 | MS.gene47555:CDS | 35.0% |
| ! | TTTAACTTCAAGGATAGTGC+AGG | - | chr4.3:25448713-25448732 | None:intergenic | 35.0% |
| ! | TTTTGTCATTCCTTTGTGGA+GGG | + | chr4.3:25447762-25447781 | MS.gene47555:CDS | 35.0% |
| !! | ATAGGAGTCTATGACTTGTT+TGG | + | chr4.3:25447368-25447387 | MS.gene47555:intron | 35.0% |
| !! | TACTGGTCTTGAAGATTACA+AGG | + | chr4.3:25449432-25449451 | MS.gene47555:CDS | 35.0% |
| !! | TGCTTTGTTCGAGTTTTGAT+AGG | - | chr4.3:25449266-25449285 | None:intergenic | 35.0% |
| !!! | TGAGATGTTTTTTCTGGCAT+TGG | - | chr4.3:25447027-25447046 | None:intergenic | 35.0% |
| ACAAATACAGACCAGCAATC+AGG | - | chr4.3:25447896-25447915 | None:intergenic | 40.0% | |
| ACACTCAACCTTCTTGGATA+TGG | + | chr4.3:25447998-25448017 | MS.gene47555:intron | 40.0% | |
| ACCCCATTTCAGAAAATTGC+AGG | - | chr4.3:25447132-25447151 | None:intergenic | 40.0% | |
| AGCAAGTCTTTATCACTTGC+TGG | + | chr4.3:25447632-25447651 | MS.gene47555:CDS | 40.0% | |
| ATATTGAGAGGCTCAAGGAT+CGG | + | chr4.3:25447231-25447250 | MS.gene47555:CDS | 40.0% | |
| ATCGAACAGATCATGACTGA+TGG | + | chr4.3:25448610-25448629 | MS.gene47555:intron | 40.0% | |
| CACATAGGTAGAGGTCATAT+TGG | + | chr4.3:25447597-25447616 | MS.gene47555:CDS | 40.0% | |
| CACTCAACCTTCTTGGATAT+GGG | + | chr4.3:25447999-25448018 | MS.gene47555:intron | 40.0% | |
| CAGGAAAAAAGTTGCTTCCT+TGG | + | chr4.3:25448911-25448930 | MS.gene47555:intron | 40.0% | |
| CCCATTTCAGAAAATTGCAG+GGG | - | chr4.3:25447130-25447149 | None:intergenic | 40.0% | |
| CCCCATTTCAGAAAATTGCA+GGG | - | chr4.3:25447131-25447150 | None:intergenic | 40.0% | |
| CTTGAAGATTACAAGGCTAG+AGG | + | chr4.3:25449439-25449458 | MS.gene47555:CDS | 40.0% | |
| GACTTCTATCGAACACCTTT+AGG | - | chr4.3:25448853-25448872 | None:intergenic | 40.0% | |
| GATCAAACACTCAACCTTCT+TGG | + | chr4.3:25447992-25448011 | MS.gene47555:intron | 40.0% | |
| GGAACTTCCAATATGATAGC+AGG | + | chr4.3:25449141-25449160 | MS.gene47555:intron | 40.0% | |
| GGATAGTGCAGGATTTCTAT+TGG | - | chr4.3:25448702-25448721 | None:intergenic | 40.0% | |
| GGCTGCAAAAGAATAAGCAA+AGG | - | chr4.3:25447738-25447757 | None:intergenic | 40.0% | |
| GTTAGTATTATGCTAGGGGT+GGG | + | chr4.3:25447969-25447988 | MS.gene47555:intron | 40.0% | |
| TATGGTTCTCCAAATTCTGG+AGG | - | chr4.3:25447000-25447019 | None:intergenic | 40.0% | |
| TCATGATCTGTTCGATTGCA+AGG | - | chr4.3:25448606-25448625 | None:intergenic | 40.0% | |
| TGCTATGGTTCTCCAAATTC+TGG | - | chr4.3:25447003-25447022 | None:intergenic | 40.0% | |
| TGGAGCATAGAGCTAAAGAA+TGG | + | chr4.3:25447652-25447671 | MS.gene47555:CDS | 40.0% | |
| TGGTAAATACAACATCCCCA+CGG | - | chr4.3:25449537-25449556 | None:intergenic | 40.0% | |
| TGTTAGTATTATGCTAGGGG+TGG | + | chr4.3:25447968-25447987 | MS.gene47555:intron | 40.0% | |
| TGTTGCGAGTGTGATAAGAT+TGG | - | chr4.3:25448266-25448285 | None:intergenic | 40.0% | |
| TTAGTATTATGCTAGGGGTG+GGG | + | chr4.3:25447970-25447989 | MS.gene47555:intron | 40.0% | |
| TTGGTAGACACGGGAAAATA+AGG | - | chr4.3:25448208-25448227 | None:intergenic | 40.0% | |
| TTTGTCATTCCTTTGTGGAG+GGG | + | chr4.3:25447763-25447782 | MS.gene47555:CDS | 40.0% | |
| ! | AGACCAGTAAAAAGCATGTG+CGG | - | chr4.3:25449421-25449440 | None:intergenic | 40.0% |
| ! | CGATCCCCATAAGATCATTT+TGG | - | chr4.3:25448446-25448465 | None:intergenic | 40.0% |
| !! | GGGCAAACCATTTTTGACAT+TGG | - | chr4.3:25448801-25448820 | None:intergenic | 40.0% |
| !! | TCCCCTGCAATTTTCTGAAA+TGG | + | chr4.3:25447126-25447145 | MS.gene47555:CDS | 40.0% |
| !! | TTGCGGTTGATGGAATTTCT+GGG | - | chr4.3:25447105-25447124 | None:intergenic | 40.0% |
| !! | TTTTCTGGCATTGGATGCTA+TGG | - | chr4.3:25447018-25447037 | None:intergenic | 40.0% |
| !!! | CCCCTGCAATTTTCTGAAAT+GGG | + | chr4.3:25447127-25447146 | MS.gene47555:CDS | 40.0% |
| !!! | CCCTGCAATTTTCTGAAATG+GGG | + | chr4.3:25447128-25447147 | MS.gene47555:CDS | 40.0% |
| AACTGTTTGCACCTGATTGC+TGG | + | chr4.3:25447882-25447901 | MS.gene47555:intron | 45.0% | |
| AGAAAATTGCAGGGGAGTTG+CGG | - | chr4.3:25447122-25447141 | None:intergenic | 45.0% | |
| ATTTGCAGAGAGCAAGGACT+TGG | + | chr4.3:25449504-25449523 | MS.gene47555:CDS | 45.0% | |
| CACAGAATTTGCAGAGAGCA+AGG | + | chr4.3:25449498-25449517 | MS.gene47555:CDS | 45.0% | |
| CGTAGATATTGAGAGGCTCA+AGG | + | chr4.3:25447226-25447245 | MS.gene47555:CDS | 45.0% | |
| CTTTAACAAAGAAGGGGTCG+TGG | + | chr4.3:25448572-25448591 | MS.gene47555:intron | 45.0% | |
| GTTGAAGTGGGTGGGAAAAA+AGG | + | chr4.3:25448045-25448064 | MS.gene47555:intron | 45.0% | |
| GTTGTGAAAGAATGGGCATG+AGG | - | chr4.3:25447062-25447081 | None:intergenic | 45.0% | |
| TATTGAGAGGCTCAAGGATC+GGG | + | chr4.3:25447232-25447251 | MS.gene47555:CDS | 45.0% | |
| TCCTTTGCAACTCAAGCCAT+TGG | + | chr4.3:25447196-25447215 | MS.gene47555:CDS | 45.0% | |
| ! | GAATTTCTGGGAAGTTGCTG+CGG | - | chr4.3:25447093-25447112 | None:intergenic | 45.0% |
| ! | TCCAATGGCTTGAGTTGCAA+AGG | - | chr4.3:25447200-25447219 | None:intergenic | 45.0% |
| !! | GTTGCGGTTGATGGAATTTC+TGG | - | chr4.3:25447106-25447125 | None:intergenic | 45.0% |
| !! | TTTCTGAAATGGGGTTCGCT+TGG | + | chr4.3:25447137-25447156 | MS.gene47555:CDS | 45.0% |
| !! | AATATATATTAATTAACAAA+TGG | + | chr4.3:25449301-25449320 | MS.gene47555:intron | 5.0% |
| AGGACGTCAAGATTCGCTAC+TGG | + | chr4.3:25447167-25447186 | MS.gene47555:CDS | 50.0% | |
| ATTCCTTTGTGGAGGGGAAG+TGG | + | chr4.3:25447769-25447788 | MS.gene47555:CDS | 50.0% | |
| GATCTGTTCGATTGCAAGGC+AGG | - | chr4.3:25448602-25448621 | None:intergenic | 50.0% | |
| TAACAAAGAAGGGGTCGTGG+TGG | + | chr4.3:25448575-25448594 | MS.gene47555:intron | 50.0% | |
| TAACCACTTCCCCTCCACAA+AGG | - | chr4.3:25447775-25447794 | None:intergenic | 50.0% | |
| TACCAGCAAGCTGACTGACT+CGG | + | chr4.3:25449552-25449571 | MS.gene47555:CDS | 50.0% | |
| TAGGCATGTTCAATGCTCGC+AGG | - | chr4.3:25449687-25449706 | None:intergenic | 50.0% | |
| !! | AAGGACTTGGTACTGATCCG+TGG | + | chr4.3:25449517-25449536 | MS.gene47555:CDS | 50.0% |
| !! | ACGCCGCACATGCTTTTTAC+TGG | + | chr4.3:25449415-25449434 | MS.gene47555:CDS | 50.0% |
| !! | AGGACTTGGTACTGATCCGT+GGG | + | chr4.3:25449518-25449537 | MS.gene47555:CDS | 50.0% |
| !! | GGACTTGGTACTGATCCGTG+GGG | + | chr4.3:25449519-25449538 | MS.gene47555:CDS | 55.0% |
| !! | TGACTGACTCGGAGGCGAAA+TGG | + | chr4.3:25449563-25449582 | MS.gene47555:CDS | 55.0% |
| CTCCGAGTCAGTCAGCTTGC+TGG | - | chr4.3:25449557-25449576 | None:intergenic | 60.0% | |
| CTCGGAGGCGAAATGGCTTG+TGG | + | chr4.3:25449570-25449589 | MS.gene47555:CDS | 60.0% | |
| GGGGTTCGCTTGGATTCTGC+AGG | + | chr4.3:25447147-25447166 | MS.gene47555:CDS | 60.0% | |
| TGCAGGGGAGTTGCGGTTGA+TGG | - | chr4.3:25447115-25447134 | None:intergenic | 60.0% | |
| !! | CAGCAAGCTGACTGACTCGG+AGG | + | chr4.3:25449555-25449574 | MS.gene47555:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 25446978 | 25449714 | 25446978 | ID=MS.gene47555 |
| chr4.3 | mRNA | 25446978 | 25449714 | 25446978 | ID=MS.gene47555.t1;Parent=MS.gene47555 |
| chr4.3 | exon | 25446978 | 25447286 | 25446978 | ID=MS.gene47555.t1.exon1;Parent=MS.gene47555.t1 |
| chr4.3 | CDS | 25446978 | 25447286 | 25446978 | ID=cds.MS.gene47555.t1;Parent=MS.gene47555.t1 |
| chr4.3 | exon | 25447594 | 25447673 | 25447594 | ID=MS.gene47555.t1.exon2;Parent=MS.gene47555.t1 |
| chr4.3 | CDS | 25447594 | 25447673 | 25447594 | ID=cds.MS.gene47555.t1;Parent=MS.gene47555.t1 |
| chr4.3 | exon | 25447756 | 25447814 | 25447756 | ID=MS.gene47555.t1.exon3;Parent=MS.gene47555.t1 |
| chr4.3 | CDS | 25447756 | 25447814 | 25447756 | ID=cds.MS.gene47555.t1;Parent=MS.gene47555.t1 |
| chr4.3 | exon | 25449410 | 25449714 | 25449410 | ID=MS.gene47555.t1.exon4;Parent=MS.gene47555.t1 |
| chr4.3 | CDS | 25449410 | 25449714 | 25449410 | ID=cds.MS.gene47555.t1;Parent=MS.gene47555.t1 |
| Gene Sequence |
| Protein sequence |
