Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47846.t1 | AET00363.2 | 95.9 | 123 | 5 | 0 | 1 | 123 | 129 | 251 | 1.50E-59 | 239.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47846.t1 | Q9FPT1 | 58.9 | 95 | 39 | 0 | 45 | 139 | 533 | 627 | 2.6e-23 | 110.2 |
| MS.gene47846.t1 | Q9FPT1 | 63.4 | 41 | 15 | 0 | 2 | 42 | 139 | 179 | 3.1e-08 | 60.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47846.t1 | G7KD35 | 95.9 | 123 | 5 | 0 | 1 | 123 | 129 | 251 | 1.1e-59 | 239.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene47846 | 0.821238 | 4.49E-53 | -1.69E-46 |
| MS.gene050156 | MS.gene47846 | 0.811129 | 8.17E-51 | -1.69E-46 |
| MS.gene051332 | MS.gene47846 | 0.823969 | 1.04E-53 | -1.69E-46 |
| MS.gene052773 | MS.gene47846 | 0.820809 | 5.64E-53 | -1.69E-46 |
| MS.gene056050 | MS.gene47846 | 0.850849 | 1.30E-60 | -1.69E-46 |
| MS.gene056162 | MS.gene47846 | 0.808215 | 3.46E-50 | -1.69E-46 |
| MS.gene058829 | MS.gene47846 | 0.814599 | 1.42E-51 | -1.69E-46 |
| MS.gene059570 | MS.gene47846 | 0.801153 | 1.03E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 40 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTTAAATGTCGTATTCT+TGG | 0.238172 | 5.3:-77527186 | None:intergenic |
| TTTCCGAGGAAGTGACATTA+AGG | 0.317568 | 5.3:+77527604 | MS.gene47846:CDS |
| CGAAAACTGCTCACTTTGTC+AGG | 0.338038 | 5.3:-77527158 | None:intergenic |
| TCTTTAAATGTCGTATTCTT+GGG | 0.382339 | 5.3:-77527185 | None:intergenic |
| TACGACATTTAAAGATTTCA+AGG | 0.384454 | 5.3:+77527193 | MS.gene47846:CDS |
| TCAATGAACAAGAATGTGAT+TGG | 0.386782 | 5.3:+77526404 | MS.gene47846:CDS |
| TCACCTCTACACTATTATAA+AGG | 0.410063 | 5.3:+77526969 | MS.gene47846:CDS |
| AAGACATCGCCGACCATGTA+AGG | 0.418288 | 5.3:+77526536 | MS.gene47846:CDS |
| GTTATTGCAGTTAGATGCTA+TGG | 0.441273 | 5.3:+77527515 | MS.gene47846:intron |
| CAATGAACAAGAATGTGATT+GGG | 0.444176 | 5.3:+77526405 | MS.gene47846:CDS |
| TTCACAACATACCCACTTGA+AGG | 0.457952 | 5.3:-77526466 | None:intergenic |
| CATTCATAAACCTTGTCACT+TGG | 0.462160 | 5.3:-77527575 | None:intergenic |
| AAGCTCTAGAGCAATTAATC+TGG | 0.476879 | 5.3:+77529319 | MS.gene47846:CDS |
| AAGTAAACTTGTCTCTGAAA+AGG | 0.481023 | 5.3:+77528465 | MS.gene47846:intron |
| TCATAAACCTTGTCACTTGG+AGG | 0.500736 | 5.3:-77527572 | None:intergenic |
| GAAGACCTTGCACAACAGAT+TGG | 0.502825 | 5.3:+77527107 | MS.gene47846:CDS |
| TACTCTTGTAGTTGAAGTTG+AGG | 0.519380 | 5.3:+77526492 | MS.gene47846:CDS |
| AATTTATCAATCACATCAGC+AGG | 0.520508 | 5.3:-77529288 | None:intergenic |
| AATATCTACTTACCCTTACA+TGG | 0.530702 | 5.3:-77526549 | None:intergenic |
| TTACCTTAATGTCACTTCCT+CGG | 0.538524 | 5.3:-77527607 | None:intergenic |
| ATGTGATTGATAAATTTGAC+AGG | 0.544982 | 5.3:+77529295 | MS.gene47846:CDS |
| TAATTCATCAAGAGGTATGA+AGG | 0.545276 | 5.3:-77526437 | None:intergenic |
| AACATACCCACTTGAAGGAT+CGG | 0.555156 | 5.3:-77526461 | None:intergenic |
| CCTTTCCAATCTGTTGTGCA+AGG | 0.559503 | 5.3:-77527112 | None:intergenic |
| GTTAGATGCTATGGAACAGA+GGG | 0.570429 | 5.3:+77527524 | MS.gene47846:intron |
| ACAGAGGGGAGAAGAAAAGA+TGG | 0.571714 | 5.3:+77527539 | MS.gene47846:CDS |
| GAATTATCCGATCCTTCAAG+TGG | 0.606514 | 5.3:+77526454 | MS.gene47846:CDS |
| TCTACTTACCCTTACATGGT+CGG | 0.615488 | 5.3:-77526545 | None:intergenic |
| GGATCGGATAATTCATCAAG+AGG | 0.615852 | 5.3:-77526445 | None:intergenic |
| TCATCAAGAGGTATGAAGGA+CGG | 0.634182 | 5.3:-77526433 | None:intergenic |
| AGACATCGCCGACCATGTAA+GGG | 0.636201 | 5.3:+77526537 | MS.gene47846:CDS |
| AATGAACAAGAATGTGATTG+GGG | 0.637571 | 5.3:+77526406 | MS.gene47846:CDS |
| GAAAACTGCTCACTTTGTCA+GGG | 0.641231 | 5.3:-77527157 | None:intergenic |
| ACACCTTTATAATAGTGTAG+AGG | 0.656703 | 5.3:-77526972 | None:intergenic |
| CCTTGCACAACAGATTGGAA+AGG | 0.664856 | 5.3:+77527112 | MS.gene47846:CDS |
| ACAAGTACCTCCAAGTGACA+AGG | 0.677388 | 5.3:+77527565 | MS.gene47846:CDS |
| AGTTAGATGCTATGGAACAG+AGG | 0.684276 | 5.3:+77527523 | MS.gene47846:intron |
| AATTATCCGATCCTTCAAGT+GGG | 0.688157 | 5.3:+77526455 | MS.gene47846:CDS |
| AGTTGAGGTAACACGCAATG+TGG | 0.705176 | 5.3:+77526507 | MS.gene47846:CDS |
| TTAGATGCTATGGAACAGAG+GGG | 0.799216 | 5.3:+77527525 | MS.gene47846:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATAATTAAATATTGGTTT+AGG | - | chr5.3:77526747-77526766 | None:intergenic | 10.0% |
| !!! | TTTTAAAAAATCAAAAGTAT+AGG | - | chr5.3:77528863-77528882 | None:intergenic | 10.0% |
| !! | AAAAGGAAAATAATATACAA+AGG | - | chr5.3:77527975-77527994 | None:intergenic | 15.0% |
| !! | CTATATTATCATTATTTAAC+TGG | + | chr5.3:77527630-77527649 | MS.gene47846:intron | 15.0% |
| !! | TACGAAAAAAATAAATAACA+TGG | - | chr5.3:77528516-77528535 | None:intergenic | 15.0% |
| !!! | TCAGTATATTTTTATTTCAT+AGG | + | chr5.3:77527343-77527362 | MS.gene47846:intron | 15.0% |
| !!! | TGTTATTTATTTTTTTCGTA+AGG | + | chr5.3:77528516-77528535 | MS.gene47846:intron | 15.0% |
| !!! | TTGATCATATTCTTTTTAAT+AGG | + | chr5.3:77528021-77528040 | MS.gene47846:intron | 15.0% |
| !! | AGAAATTTGAGAAACAAAAA+TGG | - | chr5.3:77529244-77529263 | None:intergenic | 20.0% |
| !! | ATGATTAGAAGAAAGATATA+TGG | + | chr5.3:77528713-77528732 | MS.gene47846:intron | 20.0% |
| !! | ATTATTAATTTCTCATGAGA+TGG | + | chr5.3:77526760-77526779 | MS.gene47846:intron | 20.0% |
| !! | TCAAATTTCATAATAGCAAA+GGG | - | chr5.3:77528249-77528268 | None:intergenic | 20.0% |
| !!! | AAACAAAAATGGTTGTTTTA+TGG | - | chr5.3:77529233-77529252 | None:intergenic | 20.0% |
| !!! | TTGATATGATAACATTTTAG+TGG | + | chr5.3:77528655-77528674 | MS.gene47846:intron | 20.0% |
| !!! | TTTTGTTTCTCAAATTTCTT+AGG | + | chr5.3:77529245-77529264 | MS.gene47846:intron | 20.0% |
| ! | AAAGATAGCAAACTTCAATT+AGG | - | chr5.3:77528417-77528436 | None:intergenic | 25.0% |
| ! | AGAATATGATCAACCTAAAA+AGG | - | chr5.3:77528014-77528033 | None:intergenic | 25.0% |
| ! | AGTTAATGCAATTATTCACA+AGG | - | chr5.3:77527242-77527261 | None:intergenic | 25.0% |
| ! | ATCTTTAAATGTCGTATTCT+TGG | - | chr5.3:77527189-77527208 | None:intergenic | 25.0% |
| ! | ATGTGATTGATAAATTTGAC+AGG | + | chr5.3:77529295-77529314 | MS.gene47846:CDS | 25.0% |
| ! | ATTGTCTTGAAATACTCATA+CGG | - | chr5.3:77526787-77526806 | None:intergenic | 25.0% |
| ! | CAAATTTCATAATAGCAAAG+GGG | - | chr5.3:77528248-77528267 | None:intergenic | 25.0% |
| ! | CAACAGAAATTAAAAGTTAG+TGG | - | chr5.3:77526828-77526847 | None:intergenic | 25.0% |
| ! | CTCAAATTTCATAATAGCAA+AGG | - | chr5.3:77528250-77528269 | None:intergenic | 25.0% |
| ! | GTGCTTATGTCTTAAATTTA+AGG | + | chr5.3:77527436-77527455 | MS.gene47846:intron | 25.0% |
| ! | GTGTTAGTAATTGTTTAATG+TGG | + | chr5.3:77527458-77527477 | MS.gene47846:intron | 25.0% |
| ! | TACGACATTTAAAGATTTCA+AGG | + | chr5.3:77527193-77527212 | MS.gene47846:CDS | 25.0% |
| ! | TATGTTTATACTGCTAACTT+AGG | + | chr5.3:77527073-77527092 | MS.gene47846:intron | 25.0% |
| ! | TCTTTAAATGTCGTATTCTT+GGG | - | chr5.3:77527188-77527207 | None:intergenic | 25.0% |
| ! | TTTGTGTATATTTGAGAAGA+TGG | - | chr5.3:77527272-77527291 | None:intergenic | 25.0% |
| !! | AACAAACATTACTAGTTTCT+AGG | - | chr5.3:77527012-77527031 | None:intergenic | 25.0% |
| !! | ACAAACATTACTAGTTTCTA+GGG | - | chr5.3:77527011-77527030 | None:intergenic | 25.0% |
| !! | GAGAATTTTGTAGAAGTAAA+AGG | - | chr5.3:77527992-77528011 | None:intergenic | 25.0% |
| !! | GTGTTAATTGCTATTCTTTA+AGG | - | chr5.3:77528366-77528385 | None:intergenic | 25.0% |
| !! | TCTACAAAATTCTCCTTTTT+AGG | + | chr5.3:77527998-77528017 | MS.gene47846:intron | 25.0% |
| !!! | ATTAGAGCTCTAAACTTATT+TGG | - | chr5.3:77526647-77526666 | None:intergenic | 25.0% |
| !!! | ATTGGTTTAGGAAATACTTT+TGG | - | chr5.3:77526735-77526754 | None:intergenic | 25.0% |
| !!! | CTTTGCTATTATGAAATTTG+AGG | + | chr5.3:77528248-77528267 | MS.gene47846:intron | 25.0% |
| !!! | GAAAGTTTTGTTTATGAAGT+AGG | + | chr5.3:77527308-77527327 | MS.gene47846:intron | 25.0% |
| !!! | TAATTGAAGTTTGCTATCTT+TGG | + | chr5.3:77528416-77528435 | MS.gene47846:intron | 25.0% |
| !!! | TATGATAACATTTTAGTGGT+TGG | + | chr5.3:77528659-77528678 | MS.gene47846:intron | 25.0% |
| !!! | TGTGATATATCTTAGTTTTG+AGG | + | chr5.3:77527767-77527786 | MS.gene47846:intron | 25.0% |
| !!! | TTTTGTGCTTTTTTACTTTC+TGG | - | chr5.3:77526930-77526949 | None:intergenic | 25.0% |
| !!! | TTTTTCGTAAGGTATTTTGA+TGG | + | chr5.3:77528527-77528546 | MS.gene47846:intron | 25.0% |
| AAAAGTTGCATAAACGAACT+AGG | - | chr5.3:77527853-77527872 | None:intergenic | 30.0% | |
| AAAGTTGCATAAACGAACTA+GGG | - | chr5.3:77527852-77527871 | None:intergenic | 30.0% | |
| AACTTTCTGCAAAAGATGAT+AGG | - | chr5.3:77526618-77526637 | None:intergenic | 30.0% | |
| AATATCTACTTACCCTTACA+TGG | - | chr5.3:77526552-77526571 | None:intergenic | 30.0% | |
| AATGAACAAGAATGTGATTG+GGG | + | chr5.3:77526406-77526425 | MS.gene47846:CDS | 30.0% | |
| AATTTATCAATCACATCAGC+AGG | - | chr5.3:77529291-77529310 | None:intergenic | 30.0% | |
| ACACCTTTATAATAGTGTAG+AGG | - | chr5.3:77526975-77526994 | None:intergenic | 30.0% | |
| ACTCAACAACTATTGATATG+TGG | + | chr5.3:77529160-77529179 | MS.gene47846:intron | 30.0% | |
| ACTCAATAGATTGATGTGTA+TGG | + | chr5.3:77527891-77527910 | MS.gene47846:intron | 30.0% | |
| CAAAAATAAAGAAAACGCAG+AGG | + | chr5.3:77526945-77526964 | MS.gene47846:CDS | 30.0% | |
| CAAATATACACAAAGAGTCA+TGG | + | chr5.3:77527278-77527297 | MS.gene47846:intron | 30.0% | |
| CAATGAACAAGAATGTGATT+GGG | + | chr5.3:77526405-77526424 | MS.gene47846:CDS | 30.0% | |
| GCATTAATACAAGTATGCTA+TGG | + | chr5.3:77527365-77527384 | MS.gene47846:intron | 30.0% | |
| TAAAAGTTAGTGGCAAACAT+AGG | - | chr5.3:77526818-77526837 | None:intergenic | 30.0% | |
| TAAATTACATAAGTCACACG+AGG | - | chr5.3:77527400-77527419 | None:intergenic | 30.0% | |
| TCAATGAACAAGAATGTGAT+TGG | + | chr5.3:77526404-77526423 | MS.gene47846:CDS | 30.0% | |
| TCACCTCTACACTATTATAA+AGG | + | chr5.3:77526969-77526988 | MS.gene47846:CDS | 30.0% | |
| TTATAAAACTCTCACCAAGA+AGG | + | chr5.3:77528053-77528072 | MS.gene47846:intron | 30.0% | |
| TTATGTTGCAATGGAAATTC+TGG | + | chr5.3:77528553-77528572 | MS.gene47846:intron | 30.0% | |
| TTTACTGCTGTATATTTGTG+CGG | + | chr5.3:77528926-77528945 | MS.gene47846:intron | 30.0% | |
| ! | AAGTAAACTTGTCTCTGAAA+AGG | + | chr5.3:77528465-77528484 | MS.gene47846:intron | 30.0% |
| ! | CAAGAGGATCATTTATTTCT+AGG | + | chr5.3:77528185-77528204 | MS.gene47846:intron | 30.0% |
| ! | CAGAAACATGTTTTGTGTAT+TGG | - | chr5.3:77528774-77528793 | None:intergenic | 30.0% |
| ! | GGTTTCCGGTTAAATTTTTA+GGG | + | chr5.3:77529057-77529076 | MS.gene47846:intron | 30.0% |
| ! | GTTAAGTATTGCTCAAATTC+AGG | + | chr5.3:77527921-77527940 | MS.gene47846:intron | 30.0% |
| ! | TAATTCATCAAGAGGTATGA+AGG | - | chr5.3:77526440-77526459 | None:intergenic | 30.0% |
| ! | TCAAGGTATCATCATTAGTT+AGG | + | chr5.3:77527210-77527229 | MS.gene47846:intron | 30.0% |
| ! | TGGTTTCCGGTTAAATTTTT+AGG | + | chr5.3:77529056-77529075 | MS.gene47846:intron | 30.0% |
| ! | TGTTTTGTGTATTGGATACT+TGG | - | chr5.3:77528766-77528785 | None:intergenic | 30.0% |
| ! | TTTAGGAAATACTTTTGGTC+AGG | - | chr5.3:77526730-77526749 | None:intergenic | 30.0% |
| !! | TACCTGGCTTGATTTATTTT+GGG | - | chr5.3:77526591-77526610 | None:intergenic | 30.0% |
| !!! | TGATGGATTTTATGTTGCAA+TGG | + | chr5.3:77528544-77528563 | MS.gene47846:intron | 30.0% |
| !!! | TTCTGTTGTACTTTTTCTGT+TGG | + | chr5.3:77526840-77526859 | MS.gene47846:intron | 30.0% |
| AACTGCAATAACATACCACA+AGG | - | chr5.3:77527507-77527526 | None:intergenic | 35.0% | |
| AATTATCCGATCCTTCAAGT+GGG | + | chr5.3:77526455-77526474 | MS.gene47846:CDS | 35.0% | |
| ACCGTCCCTAAAAATTTAAC+CGG | - | chr5.3:77529065-77529084 | None:intergenic | 35.0% | |
| ATGATTGTTGTGTTCTAGTG+TGG | + | chr5.3:77528585-77528604 | MS.gene47846:intron | 35.0% | |
| CATTCATAAACCTTGTCACT+TGG | - | chr5.3:77527578-77527597 | None:intergenic | 35.0% | |
| CTATTCTGTAAAATCTGCAC+TGG | + | chr5.3:77526864-77526883 | MS.gene47846:intron | 35.0% | |
| CTCAGGTATTTAAGCTATGT+CGG | + | chr5.3:77529099-77529118 | MS.gene47846:intron | 35.0% | |
| GATGAGATTGGATTATGTGT+AGG | + | chr5.3:77528145-77528164 | MS.gene47846:intron | 35.0% | |
| GTTATTGCAGTTAGATGCTA+TGG | + | chr5.3:77527515-77527534 | MS.gene47846:intron | 35.0% | |
| GTTTATACTGCTAACTTAGG+TGG | + | chr5.3:77527076-77527095 | MS.gene47846:intron | 35.0% | |
| TACTCTTGTAGTTGAAGTTG+AGG | + | chr5.3:77526492-77526511 | MS.gene47846:CDS | 35.0% | |
| TGTGTATTGGATACTTGGTT+TGG | - | chr5.3:77528761-77528780 | None:intergenic | 35.0% | |
| ! | ATTGCTCAAATTCAGGTTCT+TGG | + | chr5.3:77527928-77527947 | MS.gene47846:intron | 35.0% |
| ! | GACAAGTTTACTTGATGACA+AGG | - | chr5.3:77528458-77528477 | None:intergenic | 35.0% |
| ! | TATGAATGCATTCTTTTCCG+AGG | + | chr5.3:77527590-77527609 | MS.gene47846:CDS | 35.0% |
| ! | TGGTGCAACTGATGTATTTT+GGG | + | chr5.3:77527948-77527967 | MS.gene47846:intron | 35.0% |
| ! | TTAACCGGAAACCAATTTTC+CGG | - | chr5.3:77529050-77529069 | None:intergenic | 35.0% |
| ! | TTACCTTAATGTCACTTCCT+CGG | - | chr5.3:77527610-77527629 | None:intergenic | 35.0% |
| ! | TTGGTGCAACTGATGTATTT+TGG | + | chr5.3:77527947-77527966 | MS.gene47846:intron | 35.0% |
| ! | TTTGTACAATGGGTTTATGC+AGG | + | chr5.3:77526888-77526907 | MS.gene47846:intron | 35.0% |
| !! | CTACCTGGCTTGATTTATTT+TGG | - | chr5.3:77526592-77526611 | None:intergenic | 35.0% |
| !! | GTTAAATTTTTAGGGACGGT+TGG | + | chr5.3:77529065-77529084 | MS.gene47846:intron | 35.0% |
| !! | TCCGGTTAAATTTTTAGGGA+CGG | + | chr5.3:77529061-77529080 | MS.gene47846:intron | 35.0% |
| !!! | TCTGTTTTTTTGGCCTCTTT+CGG | + | chr5.3:77529020-77529039 | MS.gene47846:intron | 35.0% |
| !!! | TTGCTGCTGTTCTGTTTTTT+TGG | + | chr5.3:77529010-77529029 | MS.gene47846:intron | 35.0% |
| AACATACCCACTTGAAGGAT+CGG | - | chr5.3:77526464-77526483 | None:intergenic | 40.0% | |
| ACACAAAGAGTCATGGAAGT+TGG | + | chr5.3:77527285-77527304 | MS.gene47846:intron | 40.0% | |
| AGAAGGCTTAATCGACTGAT+TGG | + | chr5.3:77528070-77528089 | MS.gene47846:intron | 40.0% | |
| AGCCCAAAATAAATCAAGCC+AGG | + | chr5.3:77526586-77526605 | MS.gene47846:intron | 40.0% | |
| AGCTTGGAATGATGAACAAG+AGG | + | chr5.3:77528169-77528188 | MS.gene47846:intron | 40.0% | |
| AGTTAGATGCTATGGAACAG+AGG | + | chr5.3:77527523-77527542 | MS.gene47846:intron | 40.0% | |
| AGTTAGTGGCAAACATAGGT+TGG | - | chr5.3:77526814-77526833 | None:intergenic | 40.0% | |
| ATCAGTCGATTAAGCCTTCT+TGG | - | chr5.3:77528070-77528089 | None:intergenic | 40.0% | |
| ATCCAATCTCATCAGTTGTG+TGG | - | chr5.3:77528138-77528157 | None:intergenic | 40.0% | |
| CAAGGATCTCCAAGTTAGAA+AGG | - | chr5.3:77527489-77527508 | None:intergenic | 40.0% | |
| CACAAAGAGTCATGGAAGTT+GGG | + | chr5.3:77527286-77527305 | MS.gene47846:intron | 40.0% | |
| CAGAACAGCAGCAAAACAAA+TGG | - | chr5.3:77529004-77529023 | None:intergenic | 40.0% | |
| CGACATAGCTTAAATACCTG+AGG | - | chr5.3:77529101-77529120 | None:intergenic | 40.0% | |
| GAAAACTGCTCACTTTGTCA+GGG | - | chr5.3:77527160-77527179 | None:intergenic | 40.0% | |
| GAAGGCTTAATCGACTGATT+GGG | + | chr5.3:77528071-77528090 | MS.gene47846:intron | 40.0% | |
| GAATTATCCGATCCTTCAAG+TGG | + | chr5.3:77526454-77526473 | MS.gene47846:CDS | 40.0% | |
| GGATCGGATAATTCATCAAG+AGG | - | chr5.3:77526448-77526467 | None:intergenic | 40.0% | |
| GTGGAAGTTCCTTTCTAACT+TGG | + | chr5.3:77527477-77527496 | MS.gene47846:intron | 40.0% | |
| GTTAGATGCTATGGAACAGA+GGG | + | chr5.3:77527524-77527543 | MS.gene47846:intron | 40.0% | |
| TACCACACAACTGATGAGAT+TGG | + | chr5.3:77528133-77528152 | MS.gene47846:intron | 40.0% | |
| TCTACTTACCCTTACATGGT+CGG | - | chr5.3:77526548-77526567 | None:intergenic | 40.0% | |
| TGCTGCAGAAAACAAAGACA+AGG | - | chr5.3:77528388-77528407 | None:intergenic | 40.0% | |
| TGGATTATGTGTAGGTAGCT+TGG | + | chr5.3:77528153-77528172 | MS.gene47846:intron | 40.0% | |
| TTAGATGCTATGGAACAGAG+GGG | + | chr5.3:77527525-77527544 | MS.gene47846:CDS | 40.0% | |
| TTCACAACATACCCACTTGA+AGG | - | chr5.3:77526469-77526488 | None:intergenic | 40.0% | |
| TTCTAACTTGGAGATCCTTG+TGG | + | chr5.3:77527489-77527508 | MS.gene47846:intron | 40.0% | |
| TTTCCGAGGAAGTGACATTA+AGG | + | chr5.3:77527604-77527623 | MS.gene47846:CDS | 40.0% | |
| ! | GGTGCAACTGATGTATTTTG+GGG | + | chr5.3:77527949-77527968 | MS.gene47846:intron | 40.0% |
| ! | TCATAAACCTTGTCACTTGG+AGG | - | chr5.3:77527575-77527594 | None:intergenic | 40.0% |
| ! | TCATCAAGAGGTATGAAGGA+CGG | - | chr5.3:77526436-77526455 | None:intergenic | 40.0% |
| !! | GTCTGTTTTCTTGTCGTTTG+TGG | + | chr5.3:77528948-77528967 | MS.gene47846:intron | 40.0% |
| !!! | CTGCACTGGTTTTGTACAAT+GGG | + | chr5.3:77526878-77526897 | MS.gene47846:intron | 40.0% |
| !!! | CTGTTTTTTTGGCCTCTTTC+GGG | + | chr5.3:77529021-77529040 | MS.gene47846:intron | 40.0% |
| !!! | TCTGCACTGGTTTTGTACAA+TGG | + | chr5.3:77526877-77526896 | MS.gene47846:intron | 40.0% |
| !!! | TGTTTTTTTGGCCTCTTTCG+GGG | + | chr5.3:77529022-77529041 | MS.gene47846:intron | 40.0% |
| !!! | TTTAGGGACGGTTGGTTTTT+AGG | + | chr5.3:77529073-77529092 | MS.gene47846:intron | 40.0% |
| AAAGATGATAGGTCGCTACC+TGG | - | chr5.3:77526607-77526626 | None:intergenic | 45.0% | |
| ACAAGTACCTCCAAGTGACA+AGG | + | chr5.3:77527565-77527584 | MS.gene47846:CDS | 45.0% | |
| ACAGAGGGGAGAAGAAAAGA+TGG | + | chr5.3:77527539-77527558 | MS.gene47846:CDS | 45.0% | |
| ACAGGGGAGTTAATAAGGCT+TGG | + | chr5.3:77527726-77527745 | MS.gene47846:intron | 45.0% | |
| AGTTGAGGTAACACGCAATG+TGG | + | chr5.3:77526507-77526526 | MS.gene47846:CDS | 45.0% | |
| CCTTGCACAACAGATTGGAA+AGG | + | chr5.3:77527112-77527131 | MS.gene47846:CDS | 45.0% | |
| CCTTTCCAATCTGTTGTGCA+AGG | - | chr5.3:77527115-77527134 | None:intergenic | 45.0% | |
| CGAAAACTGCTCACTTTGTC+AGG | - | chr5.3:77527161-77527180 | None:intergenic | 45.0% | |
| GAAGACCTTGCACAACAGAT+TGG | + | chr5.3:77527107-77527126 | MS.gene47846:CDS | 45.0% | |
| ! | ACAATGGGTTTATGCAGGAG+AGG | + | chr5.3:77526893-77526912 | MS.gene47846:intron | 45.0% |
| ! | TTCTTGTCGTTTGTGGCCTT+TGG | + | chr5.3:77528955-77528974 | MS.gene47846:intron | 45.0% |
| !!! | GGTTGGTTTTTAGGTTCCTC+AGG | + | chr5.3:77529082-77529101 | MS.gene47846:intron | 45.0% |
| !! | AGAAATTAATAATTAAATAT+TGG | - | chr5.3:77526753-77526772 | None:intergenic | 5.0% |
| AAGACATCGCCGACCATGTA+AGG | + | chr5.3:77526536-77526555 | MS.gene47846:CDS | 50.0% | |
| ACAAGCCTCAACCGAACCAA+AGG | - | chr5.3:77528974-77528993 | None:intergenic | 50.0% | |
| AGACATCGCCGACCATGTAA+GGG | + | chr5.3:77526537-77526556 | MS.gene47846:CDS | 50.0% | |
| CCTTATTAACTCCCCTGTGC+GGG | - | chr5.3:77527724-77527743 | None:intergenic | 50.0% | |
| CTTATTAACTCCCCTGTGCG+GGG | - | chr5.3:77527723-77527742 | None:intergenic | 50.0% | |
| GTCGTTTGTGGCCTTTGGTT+CGG | + | chr5.3:77528960-77528979 | MS.gene47846:intron | 50.0% | |
| ! | GCCTTATTAACTCCCCTGTG+CGG | - | chr5.3:77527725-77527744 | None:intergenic | 50.0% |
| ! | GGCTCCGGAAAATTGGTTTC+CGG | + | chr5.3:77529043-77529062 | MS.gene47846:intron | 50.0% |
| CCCGCACAGGGGAGTTAATA+AGG | + | chr5.3:77527721-77527740 | MS.gene47846:intron | 55.0% | |
| CTTTCGGGGCTCCGGAAAAT+TGG | + | chr5.3:77529036-77529055 | MS.gene47846:intron | 55.0% | |
| ! | ATTTTCCGGAGCCCCGAAAG+AGG | - | chr5.3:77529036-77529055 | None:intergenic | 55.0% |
| !! | TGTGGCCTTTGGTTCGGTTG+AGG | + | chr5.3:77528966-77528985 | MS.gene47846:intron | 55.0% |
| AAGCATCTCACCCCGCACAG+GGG | + | chr5.3:77527710-77527729 | MS.gene47846:intron | 60.0% | |
| TTTGGCCTCTTTCGGGGCTC+CGG | + | chr5.3:77529028-77529047 | MS.gene47846:intron | 60.0% | |
| ! | GAAGCATCTCACCCCGCACA+GGG | + | chr5.3:77527709-77527728 | MS.gene47846:intron | 60.0% |
| !! | AGAAGCATCTCACCCCGCAC+AGG | + | chr5.3:77527708-77527727 | MS.gene47846:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 77526389 | 77529340 | 77526389 | ID=MS.gene47846 |
| chr5.3 | mRNA | 77526389 | 77529340 | 77526389 | ID=MS.gene47846.t1;Parent=MS.gene47846 |
| chr5.3 | exon | 77526389 | 77526558 | 77526389 | ID=MS.gene47846.t1.exon1;Parent=MS.gene47846.t1 |
| chr5.3 | CDS | 77526389 | 77526558 | 77526389 | ID=cds.MS.gene47846.t1;Parent=MS.gene47846.t1 |
| chr5.3 | exon | 77526910 | 77526990 | 77526910 | ID=MS.gene47846.t1.exon2;Parent=MS.gene47846.t1 |
| chr5.3 | CDS | 77526910 | 77526990 | 77526910 | ID=cds.MS.gene47846.t1;Parent=MS.gene47846.t1 |
| chr5.3 | exon | 77527095 | 77527214 | 77527095 | ID=MS.gene47846.t1.exon3;Parent=MS.gene47846.t1 |
| chr5.3 | CDS | 77527095 | 77527214 | 77527095 | ID=cds.MS.gene47846.t1;Parent=MS.gene47846.t1 |
| chr5.3 | exon | 77527525 | 77527625 | 77527525 | ID=MS.gene47846.t1.exon4;Parent=MS.gene47846.t1 |
| chr5.3 | CDS | 77527525 | 77527625 | 77527525 | ID=cds.MS.gene47846.t1;Parent=MS.gene47846.t1 |
| chr5.3 | exon | 77528468 | 77528486 | 77528468 | ID=MS.gene47846.t1.exon5;Parent=MS.gene47846.t1 |
| chr5.3 | CDS | 77528468 | 77528486 | 77528468 | ID=cds.MS.gene47846.t1;Parent=MS.gene47846.t1 |
| chr5.3 | exon | 77529267 | 77529340 | 77529267 | ID=MS.gene47846.t1.exon6;Parent=MS.gene47846.t1 |
| chr5.3 | CDS | 77529267 | 77529340 | 77529267 | ID=cds.MS.gene47846.t1;Parent=MS.gene47846.t1 |
| Gene Sequence |
| Protein sequence |
