Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47923.t1 | XP_003630006.2 | 87.8 | 296 | 36 | 0 | 1 | 296 | 1 | 296 | 2.80E-140 | 508.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47923.t1 | Q9SPE5 | 61.6 | 294 | 109 | 1 | 3 | 296 | 2 | 291 | 5.5e-100 | 365.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47923.t1 | G7L9K8 | 87.8 | 296 | 36 | 0 | 1 | 296 | 1 | 296 | 2.0e-140 | 508.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene47923 | MS.gene064565 | PPI |
| MS.gene035781 | MS.gene47923 | PPI |
| MS.gene47923 | MS.gene70948 | PPI |
| MS.gene73141 | MS.gene47923 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47923.t1 | MTR_8g089250 | 93.919 | 296 | 18 | 0 | 1 | 296 | 1 | 296 | 0.0 | 577 |
| MS.gene47923.t1 | MTR_2g047110 | 74.662 | 296 | 75 | 0 | 1 | 296 | 1 | 296 | 5.33e-169 | 470 |
| MS.gene47923.t1 | MTR_2g047110 | 73.611 | 288 | 76 | 0 | 9 | 296 | 1 | 288 | 3.20e-161 | 450 |
| MS.gene47923.t1 | MTR_2g047110 | 75.536 | 233 | 57 | 0 | 64 | 296 | 1 | 233 | 1.01e-132 | 376 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47923.t1 | AT4G20410 | 66.327 | 294 | 95 | 1 | 3 | 296 | 2 | 291 | 2.44e-146 | 412 |
| MS.gene47923.t1 | AT4G20410 | 67.376 | 282 | 88 | 1 | 15 | 296 | 20 | 297 | 1.50e-141 | 400 |
Find 55 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCCTTGTTTATCAAATTT+TGG | 0.049590 | 4.1:+11488703 | None:intergenic |
| CAAAATCTCTGCAGATAATT+AGG | 0.213078 | 4.1:-11485831 | MS.gene47923:intron |
| TGTAGCCAATGGATTTAAAA+TGG | 0.248035 | 4.1:-11488311 | MS.gene47923:intron |
| TGTGATGTCTCTAGGATTGA+TGG | 0.309410 | 4.1:-11486196 | MS.gene47923:intron |
| CAGTGGTTCCTCTTCCTCTT+TGG | 0.347486 | 4.1:+11485756 | None:intergenic |
| CGTTGTGCCAGCAAGCTTCT+CGG | 0.379503 | 4.1:-11486151 | MS.gene47923:CDS |
| TATAGCTTAATAGCTTCTTC+AGG | 0.381788 | 4.1:+11487664 | None:intergenic |
| TGTCAAAGGAACTGAGAAAC+TGG | 0.404344 | 4.1:-11487900 | MS.gene47923:CDS |
| GAATGCACCGAGAAGCTTGC+TGG | 0.405480 | 4.1:+11486144 | None:intergenic |
| CAAGCTTCTCGGTGCATTCA+AGG | 0.424643 | 4.1:-11486140 | MS.gene47923:CDS |
| GAATTCCTTATGCAGTGCTT+TGG | 0.445067 | 4.1:-11487698 | MS.gene47923:intron |
| GCTTAATAGCTTCTTCAGGC+AGG | 0.451768 | 4.1:+11487668 | None:intergenic |
| ATCAAGATTTGAAATAATGC+TGG | 0.451968 | 4.1:+11486081 | None:intergenic |
| GCTTAAAGTCTTGAGCATAA+AGG | 0.461945 | 4.1:+11486467 | None:intergenic |
| CCCACATTCAATGTACAATT+CGG | 0.466157 | 4.1:+11487846 | None:intergenic |
| TTTGCAAGAGCATCTGCTGC+AGG | 0.470939 | 4.1:+11487814 | None:intergenic |
| GCATCTTTACTGCTCAGATT+AGG | 0.471249 | 4.1:-11487254 | MS.gene47923:CDS |
| GCAGCAGATGCTCTTGCAAA+GGG | 0.481654 | 4.1:-11487811 | MS.gene47923:CDS |
| TCACAAGGTGGAGTGCAGAT+TGG | 0.493692 | 4.1:-11488490 | MS.gene47923:CDS |
| GCTTGCAAGAAAATTGCCTA+TGG | 0.495077 | 4.1:-11485809 | MS.gene47923:CDS |
| AACAACTCTAAACCTTGGTC+TGG | 0.496107 | 4.1:+11487198 | None:intergenic |
| TGCATATGAGAAAGCTTCAC+AGG | 0.504187 | 4.1:-11488263 | MS.gene47923:CDS |
| AGAGGATGGAGGAGAACAAA+TGG | 0.506299 | 4.1:-11487617 | MS.gene47923:CDS |
| GGGAGATGTGAATGCATTGA+AGG | 0.522104 | 4.1:-11485788 | MS.gene47923:CDS |
| ATGCTCTTGCAAAGGGTGCC+CGG | 0.524931 | 4.1:-11487804 | MS.gene47923:intron |
| ATGTTCTTAGCTGCTTCCCA+AGG | 0.528638 | 4.1:+11487940 | None:intergenic |
| TGCAGCAGATGCTCTTGCAA+AGG | 0.531914 | 4.1:-11487812 | MS.gene47923:CDS |
| TATTTCAAATCTTGATCATG+TGG | 0.540231 | 4.1:-11486074 | MS.gene47923:intron |
| CTTAATAGCTTCTTCAGGCA+GGG | 0.549226 | 4.1:+11487669 | None:intergenic |
| ACTGTTCTTTATGAGCAAGC+TGG | 0.552724 | 4.1:-11488458 | MS.gene47923:intron |
| ATCTGCCGCCGCTATGTCAA+AGG | 0.553022 | 4.1:-11487914 | MS.gene47923:CDS |
| TGACACTACCAAAGAGGAAG+AGG | 0.555154 | 4.1:-11485764 | MS.gene47923:CDS |
| TGACAAGTAAACAAGACCTT+GGG | 0.556963 | 4.1:-11487956 | MS.gene47923:intron |
| GGTAGACAATAATTGCACTA+AGG | 0.561881 | 4.1:+11486488 | None:intergenic |
| TCCGAATTGTACATTGAATG+TGG | 0.565163 | 4.1:-11487847 | MS.gene47923:CDS |
| TCGATATAAATCTCTGATGT+CGG | 0.565383 | 4.1:+11487876 | None:intergenic |
| CAAAGAGGAAGAGGAACCAC+TGG | 0.566421 | 4.1:-11485755 | MS.gene47923:CDS |
| TGTACAATACTTGAAGAGGA+TGG | 0.589283 | 4.1:-11487631 | MS.gene47923:CDS |
| TCCCCAAAATTTGATAAACA+AGG | 0.589805 | 4.1:-11488706 | MS.gene47923:CDS |
| TGCTTGTACAATACTTGAAG+AGG | 0.590587 | 4.1:-11487635 | MS.gene47923:CDS |
| CCGAATTGTACATTGAATGT+GGG | 0.618939 | 4.1:-11487846 | MS.gene47923:CDS |
| CTTGCAAGAAAATTGCCTAT+GGG | 0.619288 | 4.1:-11485808 | MS.gene47923:CDS |
| GCTTGCTGGCACAACGACCA+TGG | 0.625920 | 4.1:+11486158 | None:intergenic |
| TCTCAGTTCCTTTGACATAG+CGG | 0.629588 | 4.1:+11487906 | None:intergenic |
| GGCAGCACGATATAGATCAA+AGG | 0.638241 | 4.1:+11487594 | None:intergenic |
| CTTCTCGGTGCATTCAAGGA+CGG | 0.641021 | 4.1:-11486136 | MS.gene47923:CDS |
| GAACAACACTTAGTTTCACA+AGG | 0.645780 | 4.1:-11488505 | MS.gene47923:CDS |
| AATGCATTCACATCTCCCAT+AGG | 0.647563 | 4.1:+11485793 | None:intergenic |
| CAGTTCCTTTGACATAGCGG+CGG | 0.659125 | 4.1:+11487909 | None:intergenic |
| ACTGCTCAGATTAGGCGTAG+TGG | 0.661127 | 4.1:-11487246 | MS.gene47923:CDS |
| GAAGGCTGACACTACCAAAG+AGG | 0.666246 | 4.1:-11485770 | MS.gene47923:CDS |
| TGCAACTAATAGCCAGACCA+AGG | 0.666286 | 4.1:-11487210 | MS.gene47923:intron |
| ACAATACTTGAAGAGGATGG+AGG | 0.668814 | 4.1:-11487628 | MS.gene47923:CDS |
| CAACACTTAGTTTCACAAGG+TGG | 0.672429 | 4.1:-11488502 | MS.gene47923:CDS |
| GCATATGAGAAAGCTTCACA+GGG | 0.696425 | 4.1:-11488262 | MS.gene47923:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATGTAAATTTCTAAATA+AGG | + | chr4.1:11487635-11487654 | None:intergenic | 10.0% |
| !! | AAATATAATTAACAATTAAG+TGG | + | chr4.1:11485906-11485925 | None:intergenic | 10.0% |
| !! | TAGATTATATAAGTATAATA+CGG | + | chr4.1:11487505-11487524 | None:intergenic | 10.0% |
| !! | TATTATACTTATATAATCTA+GGG | - | chr4.1:11487505-11487524 | MS.gene47923:intron | 10.0% |
| !! | TTCATAAATAATAGAATATA+TGG | + | chr4.1:11488475-11488494 | None:intergenic | 10.0% |
| !!! | AAAAAAATGATTTTATATGT+TGG | - | chr4.1:11486709-11486728 | MS.gene47923:intron | 10.0% |
| !! | AATGTTACTCTTTAATTATT+GGG | - | chr4.1:11488208-11488227 | MS.gene47923:intron | 15.0% |
| !! | ATAATAAATAAATCAGAACA+AGG | + | chr4.1:11486250-11486269 | None:intergenic | 15.0% |
| !! | ATTTATGCCAATTAATTATT+CGG | + | chr4.1:11488235-11488254 | None:intergenic | 15.0% |
| !! | GTATTATACTTATATAATCT+AGG | - | chr4.1:11487504-11487523 | MS.gene47923:intron | 15.0% |
| !!! | TATATTCACATTTATTTTTC+AGG | + | chr4.1:11486919-11486938 | None:intergenic | 15.0% |
| !! | AAATATGTTGATACAATACT+AGG | - | chr4.1:11487354-11487373 | MS.gene47923:intron | 20.0% |
| !! | AAGAAAAGAATGATAGTTTA+AGG | + | chr4.1:11487405-11487424 | None:intergenic | 20.0% |
| !! | CTGAAAAATATAACATAAGA+TGG | - | chr4.1:11487024-11487043 | MS.gene47923:intron | 20.0% |
| !! | GAATGTTACTCTTTAATTAT+TGG | - | chr4.1:11488207-11488226 | MS.gene47923:intron | 20.0% |
| !! | TAAACAATATGTTTAGTTAC+CGG | + | chr4.1:11486673-11486692 | None:intergenic | 20.0% |
| !! | TAGTGATGTAATCTTAATTA+TGG | - | chr4.1:11488536-11488555 | MS.gene47923:intron | 20.0% |
| !! | TATTATTACTTTCATTGATG+TGG | - | chr4.1:11488588-11488607 | MS.gene47923:intron | 20.0% |
| !! | TCTAAATGAAAACAAATATG+TGG | - | chr4.1:11486085-11486104 | MS.gene47923:CDS | 20.0% |
| !! | TTCTCAACATGATTAAAAAT+TGG | - | chr4.1:11485861-11485880 | MS.gene47923:intron | 20.0% |
| !! | TTTAGCATAATAAAATACTC+TGG | + | chr4.1:11487911-11487930 | None:intergenic | 20.0% |
| !!! | ATGTTTTATATAAACACTAG+CGG | + | chr4.1:11486885-11486904 | None:intergenic | 20.0% |
| !!! | ATTTTAATTAGCTATTTGCA+GGG | - | chr4.1:11487650-11487669 | MS.gene47923:CDS | 20.0% |
| !!! | ATTTTTAATCATGTTGAGAA+AGG | + | chr4.1:11485861-11485880 | None:intergenic | 20.0% |
| ! | AAACAATATGTTTAGTTACC+GGG | + | chr4.1:11486672-11486691 | None:intergenic | 25.0% |
| ! | AAATCAGAACAAGGTAATTA+AGG | + | chr4.1:11486241-11486260 | None:intergenic | 25.0% |
| ! | AATGTGAATATACATTTCCA+TGG | - | chr4.1:11486927-11486946 | MS.gene47923:intron | 25.0% |
| ! | ACAATATAGTAATAAGAGCT+TGG | + | chr4.1:11486127-11486146 | None:intergenic | 25.0% |
| ! | ACAGAAAATTTCTATGGTAA+AGG | + | chr4.1:11488144-11488163 | None:intergenic | 25.0% |
| ! | AGATCAACAGAAAATTTCTA+TGG | + | chr4.1:11488150-11488169 | None:intergenic | 25.0% |
| ! | ATAATAGCACAAGAAAAATG+AGG | + | chr4.1:11488061-11488080 | None:intergenic | 25.0% |
| ! | ATACATGAATGATAAAGGAA+AGG | + | chr4.1:11485803-11485822 | None:intergenic | 25.0% |
| ! | CAAAAAGGAATCATTACTTT+AGG | + | chr4.1:11487312-11487331 | None:intergenic | 25.0% |
| ! | CAGAAAATTTCTATGGTAAA+GGG | + | chr4.1:11488143-11488162 | None:intergenic | 25.0% |
| ! | GATGAATACATGAATGATAA+AGG | + | chr4.1:11485808-11485827 | None:intergenic | 25.0% |
| ! | TAAGTAGTATAGATAGCTAA+TGG | - | chr4.1:11487568-11487587 | MS.gene47923:CDS | 25.0% |
| ! | TACATGAATGATAAAGGAAA+GGG | + | chr4.1:11485802-11485821 | None:intergenic | 25.0% |
| ! | TATAAATCACCATACATCAT+AGG | + | chr4.1:11487753-11487772 | None:intergenic | 25.0% |
| ! | TATTACTATATTGTAGCCAA+TGG | - | chr4.1:11486133-11486152 | MS.gene47923:CDS | 25.0% |
| ! | TATTTCAAATCTTGATCATG+TGG | - | chr4.1:11488381-11488400 | MS.gene47923:intron | 25.0% |
| !! | ATCAAGATTTGAAATAATGC+TGG | + | chr4.1:11488377-11488396 | None:intergenic | 25.0% |
| !! | CTAAAGTAATGATTCCTTTT+TGG | - | chr4.1:11487310-11487329 | MS.gene47923:intron | 25.0% |
| !!! | AATTTAGCTTTTAAGAACTG+AGG | + | chr4.1:11488432-11488451 | None:intergenic | 25.0% |
| !!! | AGCCTTGTTTATCAAATTTT+GGG | + | chr4.1:11485754-11485773 | None:intergenic | 25.0% |
| !!! | ATTTTTCTTGTGCTATTATG+TGG | - | chr4.1:11488062-11488081 | MS.gene47923:intron | 25.0% |
| !!! | CATTTTAATTAGCTATTTGC+AGG | - | chr4.1:11487649-11487668 | MS.gene47923:CDS | 25.0% |
| !!! | GTTTCTTTTGGAAATAGAAT+TGG | - | chr4.1:11487087-11487106 | MS.gene47923:intron | 25.0% |
| !!! | TTTTAATTAGCTATTTGCAG+GGG | - | chr4.1:11487651-11487670 | MS.gene47923:CDS | 25.0% |
| AAAATTTGCATCAGAGCAAA+TGG | + | chr4.1:11487140-11487159 | None:intergenic | 30.0% | |
| AATGAAAACAAATATGTGGC+TGG | - | chr4.1:11486089-11486108 | MS.gene47923:CDS | 30.0% | |
| AGCTAATGGAATATGTATGA+TGG | - | chr4.1:11487582-11487601 | MS.gene47923:CDS | 30.0% | |
| ATTCTTGTCTAATAACAGCA+GGG | + | chr4.1:11487066-11487085 | None:intergenic | 30.0% | |
| ATTGACGGTTTATTCATTGT+AGG | - | chr4.1:11487533-11487552 | MS.gene47923:intron | 30.0% | |
| ATTGGGACCGAATAATTAAT+TGG | - | chr4.1:11488225-11488244 | MS.gene47923:intron | 30.0% | |
| ATTTACTCCTACTTTCCATA+TGG | - | chr4.1:11485922-11485941 | MS.gene47923:intron | 30.0% | |
| ATTTCCTCAAATTGCAATGT+TGG | + | chr4.1:11487845-11487864 | None:intergenic | 30.0% | |
| CAAAATCTCTGCAGATAATT+AGG | - | chr4.1:11488624-11488643 | MS.gene47923:intron | 30.0% | |
| CATAATTCAGATGCACAATA+TGG | - | chr4.1:11487689-11487708 | MS.gene47923:intron | 30.0% | |
| GTTAAAACAACTCTAAACCT+TGG | + | chr4.1:11487265-11487284 | None:intergenic | 30.0% | |
| TAATCTAGGGACTAAATTGA+CGG | - | chr4.1:11487518-11487537 | MS.gene47923:intron | 30.0% | |
| TATAGCTTAATAGCTTCTTC+AGG | + | chr4.1:11486794-11486813 | None:intergenic | 30.0% | |
| TATTCCAACATTGCAATTTG+AGG | - | chr4.1:11487838-11487857 | MS.gene47923:CDS | 30.0% | |
| TCCCCAAAATTTGATAAACA+AGG | - | chr4.1:11485749-11485768 | MS.gene47923:CDS | 30.0% | |
| TCGATATAAATCTCTGATGT+CGG | + | chr4.1:11486582-11486601 | None:intergenic | 30.0% | |
| TCTTCAAACTCAATATTCCA+TGG | + | chr4.1:11486947-11486966 | None:intergenic | 30.0% | |
| TGAAACATTCCTTAATACAC+AGG | - | chr4.1:11487166-11487185 | MS.gene47923:intron | 30.0% | |
| TGTGTATTAAGGAATGTTTC+AGG | + | chr4.1:11487167-11487186 | None:intergenic | 30.0% | |
| TTGAAACATGATAGTCCATT+GGG | - | chr4.1:11486735-11486754 | MS.gene47923:intron | 30.0% | |
| ! | AAATGTTTTGTGATGTCTCT+AGG | - | chr4.1:11488251-11488270 | MS.gene47923:CDS | 30.0% |
| ! | TAGACAAGAATGGTTTCTTT+TGG | - | chr4.1:11487075-11487094 | MS.gene47923:intron | 30.0% |
| ! | TGCAATTTGAGGAAATGTTT+TGG | - | chr4.1:11487849-11487868 | MS.gene47923:CDS | 30.0% |
| ! | TGTAGCCAATGGATTTAAAA+TGG | - | chr4.1:11486144-11486163 | MS.gene47923:CDS | 30.0% |
| ! | TTATTTGAGACTTTCGTCAA+TGG | - | chr4.1:11486366-11486385 | MS.gene47923:intron | 30.0% |
| !! | TTTGGCCATTTTAAATCCAT+TGG | + | chr4.1:11486152-11486171 | None:intergenic | 30.0% |
| !!! | CAGCCTTGTTTATCAAATTT+TGG | + | chr4.1:11485755-11485774 | None:intergenic | 30.0% |
| !!! | GCCTTGTTTATCAAATTTTG+GGG | + | chr4.1:11485753-11485772 | None:intergenic | 30.0% |
| !!! | TTTCGTCAATGGTTTTAAAC+CGG | - | chr4.1:11486377-11486396 | MS.gene47923:intron | 30.0% |
| AAGCAAACCAGACATTTAAC+CGG | + | chr4.1:11486447-11486466 | None:intergenic | 35.0% | |
| ACACTGAAAGTAGACCAAAA+AGG | + | chr4.1:11487327-11487346 | None:intergenic | 35.0% | |
| ATCTGCATACCTGTGTATTA+AGG | + | chr4.1:11487178-11487197 | None:intergenic | 35.0% | |
| ATTAACTCAAACAAGGGAAG+TGG | + | chr4.1:11487878-11487897 | None:intergenic | 35.0% | |
| ATTGTGCATCTGAATTATGC+AGG | + | chr4.1:11487688-11487707 | None:intergenic | 35.0% | |
| CATTCTTGTCTAATAACAGC+AGG | + | chr4.1:11487067-11487086 | None:intergenic | 35.0% | |
| CCCACATTCAATGTACAATT+CGG | + | chr4.1:11486612-11486631 | None:intergenic | 35.0% | |
| CCGAATTGTACATTGAATGT+GGG | - | chr4.1:11486609-11486628 | MS.gene47923:intron | 35.0% | |
| CTGAATTATGCAGGAATAAC+TGG | + | chr4.1:11487679-11487698 | None:intergenic | 35.0% | |
| CTGCACATTAACTCAAACAA+GGG | + | chr4.1:11487884-11487903 | None:intergenic | 35.0% | |
| CTGCTGTTATTAGACAAGAA+TGG | - | chr4.1:11487065-11487084 | MS.gene47923:intron | 35.0% | |
| CTTGAAACATGATAGTCCAT+TGG | - | chr4.1:11486734-11486753 | MS.gene47923:intron | 35.0% | |
| CTTGCAAGAAAATTGCCTAT+GGG | - | chr4.1:11488647-11488666 | MS.gene47923:intron | 35.0% | |
| GAACAACACTTAGTTTCACA+AGG | - | chr4.1:11485950-11485969 | MS.gene47923:intron | 35.0% | |
| GCTTAAAGTCTTGAGCATAA+AGG | + | chr4.1:11487991-11488010 | None:intergenic | 35.0% | |
| GGTAGACAATAATTGCACTA+AGG | + | chr4.1:11487970-11487989 | None:intergenic | 35.0% | |
| TCCGAATTGTACATTGAATG+TGG | - | chr4.1:11486608-11486627 | MS.gene47923:intron | 35.0% | |
| TGACAAGTAAACAAGACCTT+GGG | - | chr4.1:11486499-11486518 | MS.gene47923:intron | 35.0% | |
| TGCTTGTACAATACTTGAAG+AGG | - | chr4.1:11486820-11486839 | MS.gene47923:intron | 35.0% | |
| TGTACAATACTTGAAGAGGA+TGG | - | chr4.1:11486824-11486843 | MS.gene47923:intron | 35.0% | |
| TTCTTGTCTAATAACAGCAG+GGG | + | chr4.1:11487065-11487084 | None:intergenic | 35.0% | |
| TTGACAAGTAAACAAGACCT+TGG | - | chr4.1:11486498-11486517 | MS.gene47923:intron | 35.0% | |
| ! | TTGGTCTACTTTCAGTGTTT+TGG | - | chr4.1:11487329-11487348 | MS.gene47923:intron | 35.0% |
| !! | AAAACTGGTGCTATCTATGA+CGG | - | chr4.1:11486343-11486362 | MS.gene47923:intron | 35.0% |
| !! | AAGGTCTTGTTTACTTGTCA+AGG | + | chr4.1:11486499-11486518 | None:intergenic | 35.0% |
| !! | CATGACTTTGAAGGTTTTTC+CGG | - | chr4.1:11486425-11486444 | MS.gene47923:intron | 35.0% |
| !! | CTGCGGTAAAGATTTTGTTT+TGG | - | chr4.1:11487605-11487624 | MS.gene47923:CDS | 35.0% |
| AACAACTCTAAACCTTGGTC+TGG | + | chr4.1:11487260-11487279 | None:intergenic | 40.0% | |
| AATGCATTCACATCTCCCAT+AGG | + | chr4.1:11488665-11488684 | None:intergenic | 40.0% | |
| ACAATACTTGAAGAGGATGG+AGG | - | chr4.1:11486827-11486846 | MS.gene47923:intron | 40.0% | |
| ACTGCATAAGGAATTCCCAA+TGG | + | chr4.1:11486753-11486772 | None:intergenic | 40.0% | |
| ACTGTTCTTTATGAGCAAGC+TGG | - | chr4.1:11485997-11486016 | MS.gene47923:intron | 40.0% | |
| CAACACTTAGTTTCACAAGG+TGG | - | chr4.1:11485953-11485972 | MS.gene47923:intron | 40.0% | |
| CATGTTGCCTGTGTTAAAAC+TGG | - | chr4.1:11486328-11486347 | MS.gene47923:intron | 40.0% | |
| CCTTCAAAGTCATGGTTCAA+AGG | + | chr4.1:11486419-11486438 | None:intergenic | 40.0% | |
| CCTTTGAACCATGACTTTGA+AGG | - | chr4.1:11486416-11486435 | MS.gene47923:intron | 40.0% | |
| CGGAAAAACCTTCAAAGTCA+TGG | + | chr4.1:11486427-11486446 | None:intergenic | 40.0% | |
| CTTAATAGCTTCTTCAGGCA+GGG | + | chr4.1:11486789-11486808 | None:intergenic | 40.0% | |
| GAATTCCTTATGCAGTGCTT+TGG | - | chr4.1:11486757-11486776 | MS.gene47923:intron | 40.0% | |
| GCAGTGATTCCTATGATGTA+TGG | - | chr4.1:11487741-11487760 | MS.gene47923:intron | 40.0% | |
| GCATATGAGAAAGCTTCACA+GGG | - | chr4.1:11486193-11486212 | MS.gene47923:intron | 40.0% | |
| GCATCTTTACTGCTCAGATT+AGG | - | chr4.1:11487201-11487220 | MS.gene47923:intron | 40.0% | |
| GCTGCACATTAACTCAAACA+AGG | + | chr4.1:11487885-11487904 | None:intergenic | 40.0% | |
| GCTTGCAAGAAAATTGCCTA+TGG | - | chr4.1:11488646-11488665 | MS.gene47923:intron | 40.0% | |
| TCTCAGTTCCTTTGACATAG+CGG | + | chr4.1:11486552-11486571 | None:intergenic | 40.0% | |
| TGCATATGAGAAAGCTTCAC+AGG | - | chr4.1:11486192-11486211 | MS.gene47923:intron | 40.0% | |
| TGGAATATGTATGATGGCTG+CGG | - | chr4.1:11487588-11487607 | MS.gene47923:CDS | 40.0% | |
| TGTCAAAGGAACTGAGAAAC+TGG | - | chr4.1:11486555-11486574 | MS.gene47923:intron | 40.0% | |
| ! | GGTTTTCTTAGAAGTGACCA+TGG | - | chr4.1:11488280-11488299 | MS.gene47923:CDS | 40.0% |
| ! | GGTTTTTCCGGTTAAATGTC+TGG | - | chr4.1:11486437-11486456 | MS.gene47923:CDS | 40.0% |
| ! | GTAAGATCATTTTCGTCCAG+TGG | + | chr4.1:11488719-11488738 | None:intergenic | 40.0% |
| ! | TCTGAAGCCATATGGAAAGT+AGG | + | chr4.1:11485932-11485951 | None:intergenic | 40.0% |
| ! | TTTTGCTCTCTCGTAGTCTT+TGG | + | chr4.1:11486170-11486189 | None:intergenic | 40.0% |
| !! | AGTGTTGTTCTGAAGCCATA+TGG | + | chr4.1:11485940-11485959 | None:intergenic | 40.0% |
| !! | ATCTTCCAAAGCACTGCATA+AGG | + | chr4.1:11486765-11486784 | None:intergenic | 40.0% |
| !! | GATAGCACCAGTTTTAACAC+AGG | + | chr4.1:11486338-11486357 | None:intergenic | 40.0% |
| !! | TGTGATGTCTCTAGGATTGA+TGG | - | chr4.1:11488259-11488278 | MS.gene47923:CDS | 40.0% |
| AGAGGATGGAGGAGAACAAA+TGG | - | chr4.1:11486838-11486857 | MS.gene47923:intron | 45.0% | |
| ATGTTCTTAGCTGCTTCCCA+AGG | + | chr4.1:11486518-11486537 | None:intergenic | 45.0% | |
| GCTTAATAGCTTCTTCAGGC+AGG | + | chr4.1:11486790-11486809 | None:intergenic | 45.0% | |
| GGCAGCACGATATAGATCAA+AGG | + | chr4.1:11486864-11486883 | None:intergenic | 45.0% | |
| GGGAGATGTGAATGCATTGA+AGG | - | chr4.1:11488667-11488686 | MS.gene47923:intron | 45.0% | |
| TGACACTACCAAAGAGGAAG+AGG | - | chr4.1:11488691-11488710 | MS.gene47923:intron | 45.0% | |
| TGCAACTAATAGCCAGACCA+AGG | - | chr4.1:11487245-11487264 | MS.gene47923:CDS | 45.0% | |
| !! | AGGCTTTAAACTGCTTGAGC+CGG | + | chr4.1:11486399-11486418 | None:intergenic | 45.0% |
| !! | TATTATATTTATATAGTTTA+GGG | + | chr4.1:11487437-11487456 | None:intergenic | 5.0% |
| !! | TTATTATATTTATATAGTTT+AGG | + | chr4.1:11487438-11487457 | None:intergenic | 5.0% |
| ACTGCTCAGATTAGGCGTAG+TGG | - | chr4.1:11487209-11487228 | MS.gene47923:intron | 50.0% | |
| CAAAGAGGAAGAGGAACCAC+TGG | - | chr4.1:11488700-11488719 | MS.gene47923:CDS | 50.0% | |
| CAGTGGTTCCTCTTCCTCTT+TGG | + | chr4.1:11488702-11488721 | None:intergenic | 50.0% | |
| CAGTTCCTTTGACATAGCGG+CGG | + | chr4.1:11486549-11486568 | None:intergenic | 50.0% | |
| GAAGGCTGACACTACCAAAG+AGG | - | chr4.1:11488685-11488704 | MS.gene47923:intron | 50.0% | |
| GCAGCAGATGCTCTTGCAAA+GGG | - | chr4.1:11486644-11486663 | MS.gene47923:intron | 50.0% | |
| TCACAAGGTGGAGTGCAGAT+TGG | - | chr4.1:11485965-11485984 | MS.gene47923:intron | 50.0% | |
| TCACTGAGCTGTTCACATGC+AGG | - | chr4.1:11487940-11487959 | MS.gene47923:CDS | 50.0% | |
| TGCAGCAGATGCTCTTGCAA+AGG | - | chr4.1:11486643-11486662 | MS.gene47923:intron | 50.0% | |
| ! | CAAGCTTCTCGGTGCATTCA+AGG | - | chr4.1:11488315-11488334 | MS.gene47923:intron | 50.0% |
| ! | CTTCTCGGTGCATTCAAGGA+CGG | - | chr4.1:11488319-11488338 | MS.gene47923:intron | 50.0% |
| !! | TTTGCAAGAGCATCTGCTGC+AGG | + | chr4.1:11486644-11486663 | None:intergenic | 50.0% |
| ATCTGCCGCCGCTATGTCAA+AGG | - | chr4.1:11486541-11486560 | MS.gene47923:intron | 55.0% | |
| CGTTGTGCCAGCAAGCTTCT+CGG | - | chr4.1:11488304-11488323 | MS.gene47923:CDS | 55.0% | |
| GAATGCACCGAGAAGCTTGC+TGG | + | chr4.1:11488314-11488333 | None:intergenic | 55.0% | |
| !! | ATGCTCTTGCAAAGGGTGCC+CGG | - | chr4.1:11486651-11486670 | MS.gene47923:intron | 55.0% |
| ! | GCTTGCTGGCACAACGACCA+TGG | + | chr4.1:11488300-11488319 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 11485735 | 11488742 | 11485735 | ID=MS.gene47923 |
| chr4.1 | mRNA | 11485735 | 11488742 | 11485735 | ID=MS.gene47923.t1;Parent=MS.gene47923 |
| chr4.1 | exon | 11488696 | 11488742 | 11488696 | ID=MS.gene47923.t1.exon1;Parent=MS.gene47923.t1 |
| chr4.1 | CDS | 11488696 | 11488742 | 11488696 | ID=cds.MS.gene47923.t1;Parent=MS.gene47923.t1 |
| chr4.1 | exon | 11488459 | 11488526 | 11488459 | ID=MS.gene47923.t1.exon2;Parent=MS.gene47923.t1 |
| chr4.1 | CDS | 11488459 | 11488526 | 11488459 | ID=cds.MS.gene47923.t1;Parent=MS.gene47923.t1 |
| chr4.1 | exon | 11488244 | 11488328 | 11488244 | ID=MS.gene47923.t1.exon3;Parent=MS.gene47923.t1 |
| chr4.1 | CDS | 11488244 | 11488328 | 11488244 | ID=cds.MS.gene47923.t1;Parent=MS.gene47923.t1 |
| chr4.1 | exon | 11487805 | 11487963 | 11487805 | ID=MS.gene47923.t1.exon4;Parent=MS.gene47923.t1 |
| chr4.1 | CDS | 11487805 | 11487963 | 11487805 | ID=cds.MS.gene47923.t1;Parent=MS.gene47923.t1 |
| chr4.1 | exon | 11487568 | 11487705 | 11487568 | ID=MS.gene47923.t1.exon5;Parent=MS.gene47923.t1 |
| chr4.1 | CDS | 11487568 | 11487705 | 11487568 | ID=cds.MS.gene47923.t1;Parent=MS.gene47923.t1 |
| chr4.1 | exon | 11487211 | 11487289 | 11487211 | ID=MS.gene47923.t1.exon6;Parent=MS.gene47923.t1 |
| chr4.1 | CDS | 11487211 | 11487289 | 11487211 | ID=cds.MS.gene47923.t1;Parent=MS.gene47923.t1 |
| chr4.1 | exon | 11486436 | 11486515 | 11486436 | ID=MS.gene47923.t1.exon7;Parent=MS.gene47923.t1 |
| chr4.1 | CDS | 11486436 | 11486515 | 11486436 | ID=cds.MS.gene47923.t1;Parent=MS.gene47923.t1 |
| chr4.1 | exon | 11486075 | 11486204 | 11486075 | ID=MS.gene47923.t1.exon8;Parent=MS.gene47923.t1 |
| chr4.1 | CDS | 11486075 | 11486204 | 11486075 | ID=cds.MS.gene47923.t1;Parent=MS.gene47923.t1 |
| chr4.1 | exon | 11485735 | 11485839 | 11485735 | ID=MS.gene47923.t1.exon9;Parent=MS.gene47923.t1 |
| chr4.1 | CDS | 11485735 | 11485839 | 11485735 | ID=cds.MS.gene47923.t1;Parent=MS.gene47923.t1 |
| Gene Sequence |
| Protein sequence |
