Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47957.t1 | XP_013446712.1 | 98.1 | 104 | 2 | 0 | 1 | 104 | 40 | 143 | 2.90E-47 | 197.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47957.t1 | A0A072TT93 | 98.1 | 104 | 2 | 0 | 1 | 104 | 40 | 143 | 2.1e-47 | 197.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055808 | MS.gene47957 | 0.815311 | 9.87E-52 | -1.69E-46 |
| MS.gene056091 | MS.gene47957 | 0.816228 | 6.16E-52 | -1.69E-46 |
| MS.gene056403 | MS.gene47957 | 0.807131 | 5.87E-50 | -1.69E-46 |
| MS.gene056605 | MS.gene47957 | 0.808656 | 2.78E-50 | -1.69E-46 |
| MS.gene058037 | MS.gene47957 | 0.804946 | 1.69E-49 | -1.69E-46 |
| MS.gene058908 | MS.gene47957 | 0.998914 | 1.19E-281 | -1.69E-46 |
| MS.gene058911 | MS.gene47957 | 0.981628 | 4.71E-153 | -1.69E-46 |
| MS.gene059935 | MS.gene47957 | 0.800072 | 1.71E-48 | -1.69E-46 |
| MS.gene060429 | MS.gene47957 | 0.80776 | 4.32E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47957.t1 | MTR_8g089655 | 98.077 | 104 | 2 | 0 | 1 | 104 | 43 | 146 | 1.53e-71 | 209 |
| MS.gene47957.t1 | MTR_8g089655 | 98.077 | 104 | 2 | 0 | 1 | 104 | 40 | 143 | 1.89e-71 | 209 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47957.t1 | AT1G16790 | 55.670 | 97 | 40 | 2 | 1 | 95 | 39 | 134 | 2.72e-33 | 113 |
Find 0 sgRNAs with CRISPR-Local
Find 24 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGAATCTTCTAGAAAGA+TGG | + | 57394:20583-20602 | MS.gene47957:CDS | 25.0% |
| TTCATCTGGTAAAGGTAAAA+AGG | + | 57394:20550-20569 | MS.gene47957:CDS | 30.0% | |
| ! | ATCTTCTAGAAAGATGGATT+CGG | + | 57394:20589-20608 | MS.gene47957:CDS | 30.0% |
| ! | TTGTTTGGAGTAATTTCATC+TGG | + | 57394:20536-20555 | MS.gene47957:CDS | 30.0% |
| CTGGTAAAGGTAAAAAGGAT+AGG | + | 57394:20555-20574 | MS.gene47957:CDS | 35.0% | |
| GAATTCCAAATCTGAGCAAT+AGG | - | 57394:20746-20765 | None:intergenic | 35.0% | |
| GGAGTAATTTCATCTGGTAA+AGG | + | 57394:20542-20561 | MS.gene47957:CDS | 35.0% | |
| TTGTTGAGACGTTTGCAATT+GGG | + | 57394:20663-20682 | MS.gene47957:CDS | 35.0% | |
| TTTCACCTATTGCTCAGATT+TGG | + | 57394:20738-20757 | MS.gene47957:CDS | 35.0% | |
| TTTGTTGAGACGTTTGCAAT+TGG | + | 57394:20662-20681 | MS.gene47957:CDS | 35.0% | |
| ATCCTCTATGACCTTCAATG+AGG | - | 57394:20504-20523 | None:intergenic | 40.0% | |
| ATGAAGCTTGATACTAAGCC+TGG | + | 57394:20638-20657 | MS.gene47957:CDS | 40.0% | |
| GCAATAGGTGAAAGAATGTG+AGG | - | 57394:20731-20750 | None:intergenic | 40.0% | |
| GGTCATAGAGGATTTACAGA+AGG | + | 57394:20511-20530 | MS.gene47957:CDS | 40.0% | |
| TCATTGAGGGGTAGATTTAG+TGG | - | 57394:20780-20799 | None:intergenic | 40.0% | |
| TGTTGAGACGTTTGCAATTG+GGG | + | 57394:20664-20683 | MS.gene47957:CDS | 40.0% | |
| TTCACAAGAAGCCTCATTGA+AGG | + | 57394:20490-20509 | MS.gene47957:CDS | 40.0% | |
| ! | TTTGCAATTGGGGTTGTTTC+TGG | + | 57394:20674-20693 | MS.gene47957:CDS | 40.0% |
| !! | GATTTACAGAAGGCGTTGTT+TGG | + | 57394:20521-20540 | MS.gene47957:CDS | 40.0% |
| AGCCTCATTGAAGGTCATAG+AGG | + | 57394:20499-20518 | MS.gene47957:CDS | 45.0% | |
| GCAAACGTCTCAACAAATCC+AGG | - | 57394:20659-20678 | None:intergenic | 45.0% | |
| !! | GGTGCTGCTCTTAATGGAAT+TGG | + | 57394:20695-20714 | MS.gene47957:CDS | 45.0% |
| !! | GTTTCTGGTGCTGCTCTTAA+TGG | + | 57394:20689-20708 | MS.gene47957:CDS | 45.0% |
| AGGGGTAGATTTAGTGGCTG+AGG | - | 57394:20774-20793 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 57394 | gene | 20485 | 20799 | 20485 | ID=MS.gene47957 |
| 57394 | mRNA | 20485 | 20799 | 20485 | ID=MS.gene47957.t1;Parent=MS.gene47957 |
| 57394 | exon | 20485 | 20799 | 20485 | ID=MS.gene47957.t1.exon1;Parent=MS.gene47957.t1 |
| 57394 | CDS | 20485 | 20799 | 20485 | ID=cds.MS.gene47957.t1;Parent=MS.gene47957.t1 |
| Gene Sequence |
| Protein sequence |
