AlfalfaGEDB | MS.gene058911

M. sativa cultivar XinJiangDaYe / MS.gene058911

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058911.t1	XP_013446712.1	98.1	104	2	0	1	104	40	143	2.90E-47	197.6

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058911.t1	A0A072TT93	98.1	104	2	0	1	104	40	143	2.1e-47	197.6

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050303	MS.gene058911	0.804999	1.65E-49	-1.69E-46
MS.gene052376	MS.gene058911	0.813342	2.69E-51	-1.69E-46
MS.gene055808	MS.gene058911	0.815069	1.12E-51	-1.69E-46
MS.gene056091	MS.gene058911	0.828149	1.06E-54	-1.69E-46
MS.gene056403	MS.gene058911	0.816748	4.71E-52	-1.69E-46
MS.gene056605	MS.gene058911	0.813753	2.18E-51	-1.69E-46
MS.gene058908	MS.gene058911	0.98149	1.02E-152	-1.69E-46
MS.gene058911	MS.gene06001	0.807618	4.63E-50	-1.69E-46
MS.gene058911	MS.gene060429	0.808557	2.92E-50	-1.69E-46
MS.gene058911	MS.gene060586	0.805598	1.24E-49	-1.69E-46
MS.gene058911	MS.gene062672	0.809467	1.86E-50	-1.69E-46
MS.gene058911	MS.gene064038	0.817072	3.99E-52	-1.69E-46
MS.gene058911	MS.gene065652	0.801404	9.15E-49	-1.69E-46
MS.gene058911	MS.gene065949	0.804172	2.45E-49	-1.69E-46
MS.gene058911	MS.gene066035	0.817174	3.78E-52	-1.69E-46
MS.gene058911	MS.gene066194	0.800518	1.39E-48	-1.69E-46
MS.gene058911	MS.gene068553	0.807768	4.30E-50	-1.69E-46
MS.gene058911	MS.gene071987	0.842583	2.37E-58	-1.69E-46
MS.gene058911	MS.gene072455	0.801842	7.44E-49	-1.69E-46
MS.gene058911	MS.gene07719	0.816468	5.44E-52	-1.69E-46
MS.gene058911	MS.gene09952	0.817642	2.97E-52	-1.69E-46
MS.gene058911	MS.gene21149	0.808101	3.65E-50	-1.69E-46
MS.gene058911	MS.gene21700	0.814113	1.82E-51	-1.69E-46
MS.gene058911	MS.gene21926	0.82373	1.18E-53	-1.69E-46
MS.gene058911	MS.gene21928	0.829182	5.94E-55	-1.69E-46
MS.gene058911	MS.gene22270	0.828885	7.01E-55	-1.69E-46
MS.gene058911	MS.gene23906	0.807578	4.72E-50	-1.69E-46
MS.gene058911	MS.gene24189	0.810569	1.08E-50	-1.69E-46
MS.gene058911	MS.gene24260	0.812952	3.27E-51	-1.69E-46
MS.gene058911	MS.gene24492	0.81741	3.35E-52	-1.69E-46
MS.gene058911	MS.gene24692	0.819508	1.12E-52	-1.69E-46
MS.gene058911	MS.gene26979	0.80891	2.46E-50	-1.69E-46
MS.gene058911	MS.gene27041	0.805146	1.54E-49	-1.69E-46
MS.gene058911	MS.gene27993	0.802853	4.61E-49	-1.69E-46
MS.gene058911	MS.gene28319	0.823279	1.51E-53	-1.69E-46
MS.gene058911	MS.gene28751	0.822069	2.89E-53	-1.69E-46
MS.gene058911	MS.gene28944	0.802976	4.34E-49	-1.69E-46
MS.gene058911	MS.gene30855	0.801367	9.31E-49	-1.69E-46
MS.gene058911	MS.gene31468	0.81454	1.46E-51	-1.69E-46
MS.gene058911	MS.gene33935	-0.80955	1.79E-50	-1.69E-46
MS.gene058911	MS.gene35135	0.80383	2.89E-49	-1.69E-46
MS.gene058911	MS.gene36468	0.802869	4.57E-49	-1.69E-46
MS.gene058911	MS.gene39207	0.814436	1.54E-51	-1.69E-46
MS.gene058911	MS.gene40513	0.808796	2.60E-50	-1.69E-46
MS.gene058911	MS.gene40648	0.804067	2.58E-49	-1.69E-46
MS.gene058911	MS.gene40811	0.823345	1.46E-53	-1.69E-46
MS.gene058911	MS.gene44165	0.817802	2.73E-52	-1.69E-46
MS.gene058911	MS.gene47957	0.981628	4.71E-153	-1.69E-46
MS.gene058911	MS.gene47959	0.988285	2.02E-173	-1.69E-46
MS.gene058911	MS.gene47962	0.83696	6.89E-57	-1.69E-46
MS.gene058911	MS.gene54884	0.801652	8.14E-49	-1.69E-46
MS.gene058911	MS.gene55732	0.810932	9.02E-51	-1.69E-46
MS.gene058911	MS.gene56253	0.837874	4.02E-57	-1.69E-46
MS.gene058911	MS.gene60120	0.803311	3.70E-49	-1.69E-46
MS.gene058911	MS.gene60781	-0.813895	2.03E-51	-1.69E-46
MS.gene058911	MS.gene61288	0.813463	2.53E-51	-1.69E-46
MS.gene058911	MS.gene62558	0.823125	1.64E-53	-1.69E-46
MS.gene058911	MS.gene62563	0.811025	8.60E-51	-1.69E-46
MS.gene058911	MS.gene63809	0.804628	1.97E-49	-1.69E-46
MS.gene058911	MS.gene63811	0.822559	2.22E-53	-1.69E-46
MS.gene058911	MS.gene64191	0.809811	1.57E-50	-1.69E-46
MS.gene058911	MS.gene71825	0.843566	1.30E-58	-1.69E-46
MS.gene058911	MS.gene71826	0.830127	3.50E-55	-1.69E-46
MS.gene058911	MS.gene71949	0.804052	2.60E-49	-1.69E-46
MS.gene058911	MS.gene71988	0.82634	2.86E-54	-1.69E-46
MS.gene058911	MS.gene72347	0.805631	1.22E-49	-1.69E-46
MS.gene058911	MS.gene74076	0.806178	9.33E-50	-1.69E-46
MS.gene058911	MS.gene74503	0.846078	2.72E-59	-1.69E-46
MS.gene058911	MS.gene75060	0.828647	8.00E-55	-1.69E-46
MS.gene058911	MS.gene75062	0.825341	4.94E-54	-1.69E-46
MS.gene058911	MS.gene75187	0.829117	6.16E-55	-1.69E-46
MS.gene058911	MS.gene77588	0.814333	1.63E-51	-1.69E-46
MS.gene058911	MS.gene80786	0.801544	8.56E-49	-1.69E-46
MS.gene058911	MS.gene86380	0.804677	1.93E-49	-1.69E-46
MS.gene058911	MS.gene88495	0.808429	3.11E-50	-1.69E-46
MS.gene058911	MS.gene88831	-0.808856	2.52E-50	-1.69E-46
MS.gene058911	MS.gene89721	0.819551	1.09E-52	-1.69E-46
MS.gene058911	MS.gene91310	0.813523	2.45E-51	-1.69E-46
MS.gene058911	MS.gene91622	0.814956	1.18E-51	-1.69E-46
MS.gene058911	MS.gene92186	0.818604	1.80E-52	-1.69E-46
MS.gene058911	MS.gene96693	0.803024	4.25E-49	-1.69E-46
MS.gene058911	MS.gene96748	0.800795	1.22E-48	-1.69E-46
MS.gene058911	MS.gene97008	0.815568	8.65E-52	-1.69E-46
MS.gene058911	MS.gene98436	0.83302	6.78E-56	-1.69E-46
MS.gene058911	MS.gene99657	0.809109	2.23E-50	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058911.t1	MTR_8g089655	98.077	104	2	0	1	104	43	146	1.53e-71	209
MS.gene058911.t1	MTR_8g089655	98.077	104	2	0	1	104	40	143	1.89e-71	209

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene058911.t1	AT1G16790	55.670	97	40	2	1	95	39	134	2.72e-33	113

Find 0 sgRNAs with CRISPR-Local

Find 24 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAATGAATCTTCTAGAAAGA+TGG	+	57393:3209-3228	MS.gene058911:CDS	25.0%
	TTCATCTGGTAAAGGTAAAA+AGG	+	57393:3176-3195	MS.gene058911:CDS	30.0%
!	ATCTTCTAGAAAGATGGATT+CGG	+	57393:3215-3234	MS.gene058911:CDS	30.0%
!	TTGTTTGGAGTAATTTCATC+TGG	+	57393:3162-3181	MS.gene058911:CDS	30.0%
	CTGGTAAAGGTAAAAAGGAT+AGG	+	57393:3181-3200	MS.gene058911:CDS	35.0%
	GAATTCCAAATCTGAGCAAT+AGG	-	57393:3372-3391	None:intergenic	35.0%
	GGAGTAATTTCATCTGGTAA+AGG	+	57393:3168-3187	MS.gene058911:CDS	35.0%
	TTGTTGAGACGTTTGCAATT+GGG	+	57393:3289-3308	MS.gene058911:CDS	35.0%
	TTTCACCTATTGCTCAGATT+TGG	+	57393:3364-3383	MS.gene058911:CDS	35.0%
	TTTGTTGAGACGTTTGCAAT+TGG	+	57393:3288-3307	MS.gene058911:CDS	35.0%
	ATCCTCTATGACCTTCAATG+AGG	-	57393:3130-3149	None:intergenic	40.0%
	ATGAAGCTTGATACTAAGCC+TGG	+	57393:3264-3283	MS.gene058911:CDS	40.0%
	GCAATAGGTGAAAGAATGTG+AGG	-	57393:3357-3376	None:intergenic	40.0%
	GGTCATAGAGGATTTACAGA+AGG	+	57393:3137-3156	MS.gene058911:CDS	40.0%
	TCATTGAGGGGTAGATTTAG+TGG	-	57393:3406-3425	None:intergenic	40.0%
	TGTTGAGACGTTTGCAATTG+GGG	+	57393:3290-3309	MS.gene058911:CDS	40.0%
	TTCACAAGAAGCCTCATTGA+AGG	+	57393:3116-3135	MS.gene058911:CDS	40.0%
!	TTTGCAATTGGGGTTGTTTC+TGG	+	57393:3300-3319	MS.gene058911:CDS	40.0%
!!	GATTTACAGAAGGCGTTGTT+TGG	+	57393:3147-3166	MS.gene058911:CDS	40.0%
	AGCCTCATTGAAGGTCATAG+AGG	+	57393:3125-3144	MS.gene058911:CDS	45.0%
	GCAAACGTCTCAACAAATCC+AGG	-	57393:3285-3304	None:intergenic	45.0%
!!	GGTGCTGCTCTTAATGGAAT+TGG	+	57393:3321-3340	MS.gene058911:CDS	45.0%
!!	GTTTCTGGTGCTGCTCTTAA+TGG	+	57393:3315-3334	MS.gene058911:CDS	45.0%
	AGGGGTAGATTTAGTGGCTG+AGG	-	57393:3400-3419	None:intergenic	50.0%

Chromosome	Type	Strat	End	Strand	Name
57393	gene	3111	3425	3111	ID=MS.gene058911
57393	mRNA	3111	3425	3111	ID=MS.gene058911.t1;Parent=MS.gene058911
57393	exon	3111	3425	3111	ID=MS.gene058911.t1.exon1;Parent=MS.gene058911.t1
57393	CDS	3111	3425	3111	ID=cds.MS.gene058911.t1;Parent=MS.gene058911.t1

Gene Sequence	>MS.gene058911 ATGGATTCACAAGAAGCCTCATTGAAGGTCATAGAGGATTTACAGAAGGCGTTGTTTGGAGTAATTTCATCTGGTAAAGGTAAAAAGGATAGGCTTATAAATGAATCTTCTAGAAAGATGGATTCGGTTAATCAAAGACTTGCTATACTTGATATGAAGCTTGATACTAAGCCTGGATTTGTTGAGACGTTTGCAATTGGGGTTGTTTCTGGTGCTGCTCTTAATGGAATTGGTGCTGTAATGCCTCACATTCTTTCACCTATTGCTCAGATTTGGAATTCTGTTACCTCAGCCACTAAATCTACCCCTCAATGA
Protein sequence	>MS.gene058911.t1 MDSQEASLKVIEDLQKALFGVISSGKGKKDRLINESSRKMDSVNQRLAILDMKLDTKPGFVETFAIGVVSGAALNGIGAVMPHILSPIAQIWNSVTSATKSTPQ