Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48391.t1 | RHN63526.1 | 87.6 | 482 | 20 | 3 | 1 | 478 | 10 | 455 | 8.90E-237 | 829.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48391.t1 | Q6GNS3 | 44.9 | 468 | 241 | 9 | 21 | 478 | 13 | 473 | 4.2e-110 | 399.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48391.t1 | A0A396ID67 | 87.6 | 482 | 20 | 3 | 1 | 478 | 10 | 455 | 6.4e-237 | 829.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene015887 | MS.gene48391 | PPI |
| MS.gene48391 | MS.gene54064 | PPI |
| MS.gene021568 | MS.gene48391 | PPI |
| MS.gene48391 | MS.gene86289 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48391.t1 | MTR_4g107030 | 85.350 | 471 | 19 | 3 | 1 | 467 | 1 | 425 | 0.0 | 817 |
| MS.gene48391.t1 | MTR_3g064880 | 73.062 | 516 | 90 | 6 | 7 | 478 | 1 | 511 | 0.0 | 743 |
| MS.gene48391.t1 | MTR_5g091890 | 55.263 | 456 | 186 | 6 | 25 | 472 | 20 | 465 | 7.47e-166 | 477 |
| MS.gene48391.t1 | MTR_5g089690 | 38.658 | 313 | 157 | 9 | 164 | 454 | 5 | 304 | 2.24e-51 | 177 |
| MS.gene48391.t1 | MTR_5g091160 | 38.462 | 312 | 158 | 7 | 164 | 454 | 5 | 303 | 4.58e-50 | 174 |
| MS.gene48391.t1 | MTR_5g090460 | 39.865 | 296 | 152 | 10 | 165 | 454 | 16 | 291 | 2.11e-48 | 170 |
| MS.gene48391.t1 | MTR_5g008620 | 38.264 | 311 | 143 | 10 | 164 | 454 | 5 | 286 | 1.79e-45 | 161 |
| MS.gene48391.t1 | MTR_5g006990 | 36.875 | 320 | 144 | 9 | 164 | 454 | 5 | 295 | 7.69e-45 | 160 |
| MS.gene48391.t1 | MTR_5g011640 | 35.604 | 323 | 152 | 10 | 164 | 451 | 5 | 306 | 1.54e-42 | 154 |
| MS.gene48391.t1 | MTR_5g011470 | 35.604 | 323 | 152 | 10 | 164 | 451 | 5 | 306 | 1.74e-42 | 154 |
| MS.gene48391.t1 | MTR_5g092540 | 46.703 | 182 | 81 | 3 | 250 | 417 | 8 | 187 | 2.57e-39 | 143 |
| MS.gene48391.t1 | MTR_5g091490 | 38.889 | 270 | 119 | 8 | 166 | 417 | 9 | 250 | 5.42e-39 | 144 |
| MS.gene48391.t1 | MTR_5g090030 | 40.336 | 238 | 122 | 5 | 214 | 451 | 18 | 235 | 2.25e-38 | 141 |
| MS.gene48391.t1 | MTR_8g442440 | 60.345 | 58 | 23 | 0 | 249 | 306 | 12 | 69 | 3.20e-16 | 74.3 |
| MS.gene48391.t1 | MTR_4g069000 | 35.542 | 166 | 80 | 5 | 312 | 454 | 31 | 192 | 9.00e-15 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48391.t1 | AT2G03820 | 59.290 | 479 | 165 | 10 | 10 | 471 | 6 | 471 | 0.0 | 570 |
Find 106 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCATCAACTCCTCCAATTC+AGG | 0.234477 | 8.3:+17044280 | None:intergenic |
| GGAACGTGATCAATTCTTAA+AGG | 0.234838 | 8.3:-17044305 | MS.gene48391:CDS |
| TACATAGCTTTGGGAAATAT+TGG | 0.252016 | 8.3:-17044817 | MS.gene48391:CDS |
| TGCTCAAGTTGCTCGAGTTT+TGG | 0.255945 | 8.3:-17044569 | MS.gene48391:CDS |
| CTTACCATGTCAGGTTTATC+AGG | 0.270325 | 8.3:-17045639 | None:intergenic |
| TGGTAAATGCAGAATTTATT+TGG | 0.270545 | 8.3:-17045320 | MS.gene48391:CDS |
| CCCAAAGCTATGTAAGCTTT+AGG | 0.296946 | 8.3:+17044826 | None:intergenic |
| TTATCATTACGACTCTTAAT+AGG | 0.312963 | 8.3:+17044952 | None:intergenic |
| TTCTTTATTAAAATCACTTC+AGG | 0.335878 | 8.3:+17044406 | None:intergenic |
| TCCTAAAGCTTACATAGCTT+TGG | 0.338275 | 8.3:-17044827 | MS.gene48391:CDS |
| GTTCAGAAGGAGGTTTATAA+TGG | 0.347373 | 8.3:-17045258 | MS.gene48391:CDS |
| ATTCTTAAAGGACCCTGAAT+TGG | 0.356998 | 8.3:-17044293 | MS.gene48391:CDS |
| CCTTGTTGAGTATGTTCAAC+AGG | 0.363556 | 8.3:-17045214 | MS.gene48391:CDS |
| AATTAAATCCTCGCGACAAA+TGG | 0.363763 | 8.3:+17044858 | None:intergenic |
| CAGACACTTCAGACACATAT+TGG | 0.363886 | 8.3:+17045524 | None:intergenic |
| CTGCAAGTAGCTTTGGCACT+CGG | 0.364452 | 8.3:+17045443 | None:intergenic |
| CTCTTGGTTATGACCTGTAT+AGG | 0.365703 | 8.3:-17044474 | MS.gene48391:CDS |
| ACTTACTAGCAGAGAGTTAG+TGG | 0.368478 | 8.3:-17044680 | MS.gene48391:CDS |
| TTTATCTCCCTTACCATGTC+AGG | 0.377835 | 8.3:-17045648 | None:intergenic |
| TGGTCCATCTGAGATTACTA+TGG | 0.385953 | 8.3:-17044617 | MS.gene48391:CDS |
| TCCTATGGAGATTGATGATA+AGG | 0.388205 | 8.3:-17044347 | MS.gene48391:CDS |
| CCTAAAGCTTACATAGCTTT+GGG | 0.388692 | 8.3:-17044826 | MS.gene48391:CDS |
| TGAATCCCTTGATCTGTTTG+AGG | 0.388839 | 8.3:-17044251 | MS.gene48391:CDS |
| GATGTGGGAAGCCTCGTTCT+TGG | 0.390234 | 8.3:-17044378 | MS.gene48391:CDS |
| ATTAAATCCTCGCGACAAAT+GGG | 0.395990 | 8.3:+17044859 | None:intergenic |
| CCCTGAATTGGAGGAGTTGA+TGG | 0.406602 | 8.3:-17044281 | MS.gene48391:CDS |
| AGACACATATTGGTTGTGTT+TGG | 0.408070 | 8.3:+17045534 | None:intergenic |
| TTCTTGGAAATCACTTCCTA+TGG | 0.410620 | 8.3:-17044362 | MS.gene48391:CDS |
| ACTTGCAGCCACCGAGAACT+TGG | 0.412238 | 8.3:-17045428 | MS.gene48391:CDS |
| ACAACTGCAACCCACTGATC+AGG | 0.417342 | 8.3:+17045153 | None:intergenic |
| ATCTAAGAAACTGTACTTCA+AGG | 0.423477 | 8.3:+17044738 | None:intergenic |
| TCTTGGTTATGACCTGTATA+GGG | 0.432161 | 8.3:-17044473 | MS.gene48391:CDS |
| TCGGTGGCTGCAAGTAGCTT+TGG | 0.434736 | 8.3:+17045436 | None:intergenic |
| TTCACAGTTTATCAAACAAT+CGG | 0.439106 | 8.3:-17045594 | MS.gene48391:CDS |
| CTTCATCCTCAAACAGATCA+AGG | 0.439568 | 8.3:+17044245 | None:intergenic |
| TGCAAGTAGCTTTGGCACTC+GGG | 0.442410 | 8.3:+17045444 | None:intergenic |
| GGAATATATAGTGTTGGATC+TGG | 0.443227 | 8.3:-17044659 | MS.gene48391:CDS |
| GCTAGTAAGTAAGGATTTGA+AGG | 0.443338 | 8.3:+17044693 | None:intergenic |
| TCTTAGATGCTGATCAGTAT+TGG | 0.445513 | 8.3:-17044723 | MS.gene48391:CDS |
| TAACTCTCTGCTAGTAAGTA+AGG | 0.447479 | 8.3:+17044684 | None:intergenic |
| ACATGTGTGAATCATGTTCC+AGG | 0.458655 | 8.3:-17045188 | MS.gene48391:CDS |
| AAGCCTGGTGACCATGCTCT+TGG | 0.462066 | 8.3:-17044490 | MS.gene48391:CDS |
| AGCTGTCAGAATCAAACAAA+TGG | 0.463377 | 8.3:-17045049 | MS.gene48391:CDS |
| CTTAAAGGACCCTGAATTGG+AGG | 0.464001 | 8.3:-17044290 | MS.gene48391:CDS |
| TGAAGATGAGGAGGATAACA+TGG | 0.467885 | 8.3:-17044227 | MS.gene48391:CDS |
| TGTAGTCTGACCCAAGTTCT+CGG | 0.487384 | 8.3:+17045417 | None:intergenic |
| CATTACTGTTAGCCCTATAC+AGG | 0.490027 | 8.3:+17044461 | None:intergenic |
| AAACTGTACTTCAAGGTAAG+TGG | 0.497823 | 8.3:+17044745 | None:intergenic |
| GGGTTGCAGTTGTGCAACTC+AGG | 0.502047 | 8.3:-17045143 | MS.gene48391:CDS |
| AACACTTTGTGCTGCAAATG+TGG | 0.502121 | 8.3:-17045570 | MS.gene48391:CDS |
| CCATCAACTCCTCCAATTCA+GGG | 0.502743 | 8.3:+17044281 | None:intergenic |
| ACCTTGGTGCAAATCACAAT+AGG | 0.504166 | 8.3:+17044793 | None:intergenic |
| TAATAAAGAAGAAGAGATGT+GGG | 0.504765 | 8.3:-17044393 | MS.gene48391:CDS |
| AGAATCAAACAAATGGATCA+TGG | 0.514811 | 8.3:-17045042 | MS.gene48391:CDS |
| TGAATCATGTTCCAGGGTGC+AGG | 0.515850 | 8.3:-17045181 | MS.gene48391:CDS |
| AGCAATGCTGTTAGTAACCT+TGG | 0.515955 | 8.3:+17044777 | None:intergenic |
| GAATGTCAATAAAGTGAAGC+TGG | 0.517015 | 8.3:-17045340 | MS.gene48391:CDS |
| GAATTGGAGGAGTTGATGGC+TGG | 0.520156 | 8.3:-17044277 | MS.gene48391:CDS |
| GAGGCTGTTTCATCTAAAGT+TGG | 0.520425 | 8.3:-17044637 | MS.gene48391:CDS |
| AGTCAAAGTCAGTGTTCAGA+AGG | 0.524406 | 8.3:-17045271 | MS.gene48391:CDS |
| CAAAGTCAGTGTTCAGAAGG+AGG | 0.524866 | 8.3:-17045268 | MS.gene48391:CDS |
| CGGGGCAATGCACGAGCACG+CGG | 0.528131 | 8.3:+17045463 | None:intergenic |
| TAACCAAGAGCATGGTCACC+AGG | 0.533294 | 8.3:+17044487 | None:intergenic |
| ACTCAACAAGGTAAGACTGT+TGG | 0.540033 | 8.3:+17045226 | None:intergenic |
| ATGGAGATTGATGATAAGGT+TGG | 0.544248 | 8.3:-17044343 | MS.gene48391:CDS |
| ATTAGAAACAAAGGAGCTGT+TGG | 0.544271 | 8.3:-17045394 | MS.gene48391:CDS |
| AAATGCAGAATTTATTTGGA+CGG | 0.551243 | 8.3:-17045316 | MS.gene48391:CDS |
| GCAGGCTAACCCTGATCAGT+GGG | 0.552421 | 8.3:-17045163 | MS.gene48391:CDS |
| GTTAGTGGAATATATAGTGT+TGG | 0.553313 | 8.3:-17044665 | MS.gene48391:CDS |
| CATGTCAGGTTTATCAGGCA+TGG | 0.555533 | 8.3:-17045634 | MS.gene48391:CDS |
| TAGATGCTGATCAGTATTGG+AGG | 0.561272 | 8.3:-17044720 | MS.gene48391:CDS |
| GGTTGGAGTTGATTACAACT+TGG | 0.561543 | 8.3:-17044326 | MS.gene48391:CDS |
| TCCTATTGTGATTTGCACCA+AGG | 0.561646 | 8.3:-17044794 | MS.gene48391:CDS |
| TTAATAAAGAAGAAGAGATG+TGG | 0.569687 | 8.3:-17044394 | MS.gene48391:CDS |
| CAACTGCAACCCACTGATCA+GGG | 0.578615 | 8.3:+17045154 | None:intergenic |
| TGCAGGCTAACCCTGATCAG+TGG | 0.581561 | 8.3:-17045164 | MS.gene48391:CDS |
| GGTCCATCTGAGATTACTAT+GGG | 0.584432 | 8.3:-17044616 | MS.gene48391:CDS |
| GCAGAAGTTGATATTACAGA+AGG | 0.588364 | 8.3:-17045498 | MS.gene48391:CDS |
| GCAAGTAGCTTTGGCACTCG+GGG | 0.589757 | 8.3:+17045445 | None:intergenic |
| CCTGTTGAACATACTCAACA+AGG | 0.590769 | 8.3:+17045214 | None:intergenic |
| CCACCCATAGTAATCTCAGA+TGG | 0.590820 | 8.3:+17044613 | None:intergenic |
| ACACTTTGTGCTGCAAATGT+GGG | 0.603827 | 8.3:-17045569 | MS.gene48391:CDS |
| TTCATCCTCAAACAGATCAA+GGG | 0.607113 | 8.3:+17044246 | None:intergenic |
| TCTGTTTGAGGATGAAGATG+AGG | 0.610516 | 8.3:-17044239 | MS.gene48391:CDS |
| GTTTGAGGATGAAGATGAGG+AGG | 0.612046 | 8.3:-17044236 | MS.gene48391:CDS |
| CTTGCAGCCACCGAGAACTT+GGG | 0.612111 | 8.3:-17045427 | MS.gene48391:CDS |
| TTTCTATTAGAACTCATTTG+GGG | 0.613658 | 8.3:-17044522 | MS.gene48391:CDS |
| CAGACTACAATTAGAAACAA+AGG | 0.614245 | 8.3:-17045403 | MS.gene48391:CDS |
| TCAGGCAACATGTCTCGCAC+AGG | 0.620504 | 8.3:-17045125 | MS.gene48391:CDS |
| TTAAATCCTCGCGACAAATG+GGG | 0.624671 | 8.3:+17044860 | None:intergenic |
| ACCTTATCATCAATCTCCAT+AGG | 0.628583 | 8.3:+17044346 | None:intergenic |
| GACGGAGCCCCATTCCAAGA+GGG | 0.629548 | 8.3:-17045298 | MS.gene48391:CDS |
| GAGCAGCTAATTCTGAAGCA+TGG | 0.629749 | 8.3:-17045084 | MS.gene48391:CDS |
| TATTTCTCTAAACGAAGTCA+CGG | 0.633975 | 8.3:-17045009 | MS.gene48391:CDS |
| CCATCTGAGATTACTATGGG+TGG | 0.634830 | 8.3:-17044613 | MS.gene48391:CDS |
| CATGCCTGATAAACCTGACA+TGG | 0.635117 | 8.3:+17045635 | None:intergenic |
| ACAGGTCATAACCAAGAGCA+TGG | 0.640269 | 8.3:+17044479 | None:intergenic |
| AATCAGCCCCATTTGTCGCG+AGG | 0.643382 | 8.3:-17044866 | MS.gene48391:CDS |
| ATATATAGTGTTGGATCTGG+AGG | 0.644394 | 8.3:-17044656 | MS.gene48391:CDS |
| AGATGCTGATCAGTATTGGA+GGG | 0.645940 | 8.3:-17044719 | MS.gene48391:CDS |
| ATCAGGGTTAGCCTGCACCC+TGG | 0.646953 | 8.3:+17045170 | None:intergenic |
| GGAAGTGATTTCCAAGAACG+AGG | 0.668709 | 8.3:+17044367 | None:intergenic |
| GCTGAATATGACAAGTACAA+AGG | 0.669807 | 8.3:-17044436 | MS.gene48391:CDS |
| GGACGGAGCCCCATTCCAAG+AGG | 0.670484 | 8.3:-17045299 | MS.gene48391:CDS |
| CATGTGTGAATCATGTTCCA+GGG | 0.675490 | 8.3:-17045187 | MS.gene48391:CDS |
| AGTCTGACCCAAGTTCTCGG+TGG | 0.743468 | 8.3:+17045420 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCTTTATTAAAATCACTTC+AGG | + | chr8.3:17045449-17045468 | None:intergenic | 20.0% |
| !!! | AACAACTTTTTGGAATTTAT+TGG | - | chr8.3:17044867-17044886 | MS.gene48391:CDS | 20.0% |
| !!! | TTTTCTATTAGAACTCATTT+GGG | - | chr8.3:17045329-17045348 | MS.gene48391:CDS | 20.0% |
| ! | AAATGCAGAATTTATTTGGA+CGG | - | chr8.3:17044536-17044555 | MS.gene48391:CDS | 25.0% |
| ! | TAATAAAGAAGAAGAGATGT+GGG | - | chr8.3:17045459-17045478 | MS.gene48391:CDS | 25.0% |
| ! | TGGTAAATGCAGAATTTATT+TGG | - | chr8.3:17044532-17044551 | MS.gene48391:CDS | 25.0% |
| ! | TTAATAAAGAAGAAGAGATG+TGG | - | chr8.3:17045458-17045477 | MS.gene48391:CDS | 25.0% |
| ! | TTATCATTACGACTCTTAAT+AGG | + | chr8.3:17044903-17044922 | None:intergenic | 25.0% |
| ! | TTCACAGTTTATCAAACAAT+CGG | - | chr8.3:17044258-17044277 | MS.gene48391:CDS | 25.0% |
| ! | TTTCTATTAGAACTCATTTG+GGG | - | chr8.3:17045330-17045349 | MS.gene48391:CDS | 25.0% |
| !! | CTTTTCTATTAGAACTCATT+TGG | - | chr8.3:17045328-17045347 | MS.gene48391:CDS | 25.0% |
| AGAATCAAACAAATGGATCA+TGG | - | chr8.3:17044810-17044829 | MS.gene48391:CDS | 30.0% | |
| ATCTAAGAAACTGTACTTCA+AGG | + | chr8.3:17045117-17045136 | None:intergenic | 30.0% | |
| CAGACTACAATTAGAAACAA+AGG | - | chr8.3:17044449-17044468 | MS.gene48391:CDS | 30.0% | |
| GTTAGTGGAATATATAGTGT+TGG | - | chr8.3:17045187-17045206 | MS.gene48391:CDS | 30.0% | |
| TATTTCTCTAAACGAAGTCA+CGG | - | chr8.3:17044843-17044862 | MS.gene48391:CDS | 30.0% | |
| !! | TACATAGCTTTGGGAAATAT+TGG | - | chr8.3:17045035-17045054 | MS.gene48391:CDS | 30.0% |
| AAACTGTACTTCAAGGTAAG+TGG | + | chr8.3:17045110-17045129 | None:intergenic | 35.0% | |
| AATTAAATCCTCGCGACAAA+TGG | + | chr8.3:17044997-17045016 | None:intergenic | 35.0% | |
| ACCTTATCATCAATCTCCAT+AGG | + | chr8.3:17045509-17045528 | None:intergenic | 35.0% | |
| AGCTGTCAGAATCAAACAAA+TGG | - | chr8.3:17044803-17044822 | MS.gene48391:CDS | 35.0% | |
| ATTAAATCCTCGCGACAAAT+GGG | + | chr8.3:17044996-17045015 | None:intergenic | 35.0% | |
| ATTAGAAACAAAGGAGCTGT+TGG | - | chr8.3:17044458-17044477 | MS.gene48391:CDS | 35.0% | |
| ATTCTTAAAGGACCCTGAAT+TGG | - | chr8.3:17045559-17045578 | MS.gene48391:CDS | 35.0% | |
| CCTAAAGCTTACATAGCTTT+GGG | - | chr8.3:17045026-17045045 | MS.gene48391:CDS | 35.0% | |
| GAATGTCAATAAAGTGAAGC+TGG | - | chr8.3:17044512-17044531 | MS.gene48391:CDS | 35.0% | |
| GCTAGTAAGTAAGGATTTGA+AGG | + | chr8.3:17045162-17045181 | None:intergenic | 35.0% | |
| GCTGAATATGACAAGTACAA+AGG | - | chr8.3:17045416-17045435 | MS.gene48391:CDS | 35.0% | |
| GGAACGTGATCAATTCTTAA+AGG | - | chr8.3:17045547-17045566 | MS.gene48391:CDS | 35.0% | |
| GTTCAGAAGGAGGTTTATAA+TGG | - | chr8.3:17044594-17044613 | MS.gene48391:CDS | 35.0% | |
| TAACTCTCTGCTAGTAAGTA+AGG | + | chr8.3:17045171-17045190 | None:intergenic | 35.0% | |
| TCCTAAAGCTTACATAGCTT+TGG | - | chr8.3:17045025-17045044 | MS.gene48391:CDS | 35.0% | |
| TCTTAGATGCTGATCAGTAT+TGG | - | chr8.3:17045129-17045148 | MS.gene48391:CDS | 35.0% | |
| TCTTGGTTATGACCTGTATA+GGG | - | chr8.3:17045379-17045398 | MS.gene48391:CDS | 35.0% | |
| TTCATCCTCAAACAGATCAA+GGG | + | chr8.3:17045609-17045628 | None:intergenic | 35.0% | |
| TTCTTGGAAATCACTTCCTA+TGG | - | chr8.3:17045490-17045509 | MS.gene48391:CDS | 35.0% | |
| ! | AAGTCACGGTAACAACTTTT+TGG | - | chr8.3:17044857-17044876 | MS.gene48391:CDS | 35.0% |
| ! | AGACACATATTGGTTGTGTT+TGG | + | chr8.3:17044321-17044340 | None:intergenic | 35.0% |
| ! | ATATATAGTGTTGGATCTGG+AGG | - | chr8.3:17045196-17045215 | MS.gene48391:CDS | 35.0% |
| ! | ATGGAGATTGATGATAAGGT+TGG | - | chr8.3:17045509-17045528 | MS.gene48391:CDS | 35.0% |
| ! | CAGGCGTACTTTCTTTTATT+TGG | - | chr8.3:17044746-17044765 | MS.gene48391:CDS | 35.0% |
| ! | GGAATATATAGTGTTGGATC+TGG | - | chr8.3:17045193-17045212 | MS.gene48391:CDS | 35.0% |
| ! | TCCTATGGAGATTGATGATA+AGG | - | chr8.3:17045505-17045524 | MS.gene48391:CDS | 35.0% |
| !! | GCAGAAGTTGATATTACAGA+AGG | - | chr8.3:17044354-17044373 | MS.gene48391:CDS | 35.0% |
| AACACTTTGTGCTGCAAATG+TGG | - | chr8.3:17044282-17044301 | MS.gene48391:CDS | 40.0% | |
| ACACTTTGTGCTGCAAATGT+GGG | - | chr8.3:17044283-17044302 | MS.gene48391:CDS | 40.0% | |
| ACATGTGTGAATCATGTTCC+AGG | - | chr8.3:17044664-17044683 | MS.gene48391:CDS | 40.0% | |
| ACTCAACAAGGTAAGACTGT+TGG | + | chr8.3:17044629-17044648 | None:intergenic | 40.0% | |
| ACTTACTAGCAGAGAGTTAG+TGG | - | chr8.3:17045172-17045191 | MS.gene48391:CDS | 40.0% | |
| AGCAATGCTGTTAGTAACCT+TGG | + | chr8.3:17045078-17045097 | None:intergenic | 40.0% | |
| AGTCAAAGTCAGTGTTCAGA+AGG | - | chr8.3:17044581-17044600 | MS.gene48391:CDS | 40.0% | |
| CAGACACTTCAGACACATAT+TGG | + | chr8.3:17044331-17044350 | None:intergenic | 40.0% | |
| CATGTGTGAATCATGTTCCA+GGG | - | chr8.3:17044665-17044684 | MS.gene48391:CDS | 40.0% | |
| CATTACTGTTAGCCCTATAC+AGG | + | chr8.3:17045394-17045413 | None:intergenic | 40.0% | |
| CCCAAAGCTATGTAAGCTTT+AGG | + | chr8.3:17045029-17045048 | None:intergenic | 40.0% | |
| CCTGTTGAACATACTCAACA+AGG | + | chr8.3:17044641-17044660 | None:intergenic | 40.0% | |
| CCTTGTTGAGTATGTTCAAC+AGG | - | chr8.3:17044638-17044657 | MS.gene48391:CDS | 40.0% | |
| CTCTTGGTTATGACCTGTAT+AGG | - | chr8.3:17045378-17045397 | MS.gene48391:CDS | 40.0% | |
| CTTCATCCTCAAACAGATCA+AGG | + | chr8.3:17045610-17045629 | None:intergenic | 40.0% | |
| TCTGTTTGAGGATGAAGATG+AGG | - | chr8.3:17045613-17045632 | MS.gene48391:CDS | 40.0% | |
| TGAAGATGAGGAGGATAACA+TGG | - | chr8.3:17045625-17045644 | MS.gene48391:CDS | 40.0% | |
| TGAATCCCTTGATCTGTTTG+AGG | - | chr8.3:17045601-17045620 | MS.gene48391:CDS | 40.0% | |
| TTAAATCCTCGCGACAAATG+GGG | + | chr8.3:17044995-17045014 | None:intergenic | 40.0% | |
| ! | ACCTTGGTGCAAATCACAAT+AGG | + | chr8.3:17045062-17045081 | None:intergenic | 40.0% |
| ! | ACTTTTACCCTCTTGGAATG+GGG | + | chr8.3:17044564-17044583 | None:intergenic | 40.0% |
| ! | AGATGCTGATCAGTATTGGA+GGG | - | chr8.3:17045133-17045152 | MS.gene48391:CDS | 40.0% |
| ! | GACTTTTACCCTCTTGGAAT+GGG | + | chr8.3:17044565-17044584 | None:intergenic | 40.0% |
| ! | GAGGCTGTTTCATCTAAAGT+TGG | - | chr8.3:17045215-17045234 | MS.gene48391:CDS | 40.0% |
| ! | GGTCCATCTGAGATTACTAT+GGG | - | chr8.3:17045236-17045255 | MS.gene48391:CDS | 40.0% |
| ! | GGTTGGAGTTGATTACAACT+TGG | - | chr8.3:17045526-17045545 | MS.gene48391:CDS | 40.0% |
| ! | TAGATGCTGATCAGTATTGG+AGG | - | chr8.3:17045132-17045151 | MS.gene48391:CDS | 40.0% |
| ! | TCCTATTGTGATTTGCACCA+AGG | - | chr8.3:17045058-17045077 | MS.gene48391:CDS | 40.0% |
| ! | TGACTTTTACCCTCTTGGAA+TGG | + | chr8.3:17044566-17044585 | None:intergenic | 40.0% |
| ! | TGGTCCATCTGAGATTACTA+TGG | - | chr8.3:17045235-17045254 | MS.gene48391:CDS | 40.0% |
| !! | GACTTTGACTTTTACCCTCT+TGG | + | chr8.3:17044571-17044590 | None:intergenic | 40.0% |
| !!! | GTTGCTCGAGTTTTGGATTT+TGG | - | chr8.3:17045290-17045309 | MS.gene48391:CDS | 40.0% |
| ACAGGTCATAACCAAGAGCA+TGG | + | chr8.3:17045376-17045395 | None:intergenic | 45.0% | |
| CAAAGTCAGTGTTCAGAAGG+AGG | - | chr8.3:17044584-17044603 | MS.gene48391:CDS | 45.0% | |
| CCACCCATAGTAATCTCAGA+TGG | + | chr8.3:17045242-17045261 | None:intergenic | 45.0% | |
| CCATCAACTCCTCCAATTCA+GGG | + | chr8.3:17045574-17045593 | None:intergenic | 45.0% | |
| CTTAAAGGACCCTGAATTGG+AGG | - | chr8.3:17045562-17045581 | MS.gene48391:CDS | 45.0% | |
| GGAAGTGATTTCCAAGAACG+AGG | + | chr8.3:17045488-17045507 | None:intergenic | 45.0% | |
| GTTTGAGGATGAAGATGAGG+AGG | - | chr8.3:17045616-17045635 | MS.gene48391:CDS | 45.0% | |
| TGTAGTCTGACCCAAGTTCT+CGG | + | chr8.3:17044438-17044457 | None:intergenic | 45.0% | |
| ! | CCATCTGAGATTACTATGGG+TGG | - | chr8.3:17045239-17045258 | MS.gene48391:CDS | 45.0% |
| !! | GAGCAGCTAATTCTGAAGCA+TGG | - | chr8.3:17044768-17044787 | MS.gene48391:CDS | 45.0% |
| !! | TGCTCAAGTTGCTCGAGTTT+TGG | - | chr8.3:17045283-17045302 | MS.gene48391:CDS | 45.0% |
| !!! | TTGGGGCATCTTTTAAAGCC+TGG | - | chr8.3:17045347-17045366 | MS.gene48391:CDS | 45.0% |
| ACAACTGCAACCCACTGATC+AGG | + | chr8.3:17044702-17044721 | None:intergenic | 50.0% | |
| CAACTGCAACCCACTGATCA+GGG | + | chr8.3:17044701-17044720 | None:intergenic | 50.0% | |
| CCCTGAATTGGAGGAGTTGA+TGG | - | chr8.3:17045571-17045590 | MS.gene48391:CDS | 50.0% | |
| GCCATCAACTCCTCCAATTC+AGG | + | chr8.3:17045575-17045594 | None:intergenic | 50.0% | |
| TGAATCATGTTCCAGGGTGC+AGG | - | chr8.3:17044671-17044690 | MS.gene48391:CDS | 50.0% | |
| ! | TAACCAAGAGCATGGTCACC+AGG | + | chr8.3:17045368-17045387 | None:intergenic | 50.0% |
| !! | CTGCAAGTAGCTTTGGCACT+CGG | + | chr8.3:17044412-17044431 | None:intergenic | 50.0% |
| !! | GAATTGGAGGAGTTGATGGC+TGG | - | chr8.3:17045575-17045594 | MS.gene48391:CDS | 50.0% |
| !! | TGCAAGTAGCTTTGGCACTC+GGG | + | chr8.3:17044411-17044430 | None:intergenic | 50.0% |
| AAGCCTGGTGACCATGCTCT+TGG | - | chr8.3:17045362-17045381 | MS.gene48391:CDS | 55.0% | |
| AATCAGCCCCATTTGTCGCG+AGG | - | chr8.3:17044986-17045005 | MS.gene48391:CDS | 55.0% | |
| ACTTGCAGCCACCGAGAACT+TGG | - | chr8.3:17044424-17044443 | MS.gene48391:CDS | 55.0% | |
| AGTCTGACCCAAGTTCTCGG+TGG | + | chr8.3:17044435-17044454 | None:intergenic | 55.0% | |
| CTTGCAGCCACCGAGAACTT+GGG | - | chr8.3:17044425-17044444 | MS.gene48391:CDS | 55.0% | |
| GATGTGGGAAGCCTCGTTCT+TGG | - | chr8.3:17045474-17045493 | MS.gene48391:CDS | 55.0% | |
| GCAGGCTAACCCTGATCAGT+GGG | - | chr8.3:17044689-17044708 | MS.gene48391:CDS | 55.0% | |
| GGGTTGCAGTTGTGCAACTC+AGG | - | chr8.3:17044709-17044728 | MS.gene48391:CDS | 55.0% | |
| TCAGGCAACATGTCTCGCAC+AGG | - | chr8.3:17044727-17044746 | MS.gene48391:CDS | 55.0% | |
| TCGGTGGCTGCAAGTAGCTT+TGG | + | chr8.3:17044419-17044438 | None:intergenic | 55.0% | |
| TGCAGGCTAACCCTGATCAG+TGG | - | chr8.3:17044688-17044707 | MS.gene48391:CDS | 55.0% | |
| !! | GCAAGTAGCTTTGGCACTCG+GGG | + | chr8.3:17044410-17044429 | None:intergenic | 55.0% |
| GACGGAGCCCCATTCCAAGA+GGG | - | chr8.3:17044554-17044573 | MS.gene48391:CDS | 60.0% | |
| !! | ATCAGGGTTAGCCTGCACCC+TGG | + | chr8.3:17044685-17044704 | None:intergenic | 60.0% |
| GGACGGAGCCCCATTCCAAG+AGG | - | chr8.3:17044553-17044572 | MS.gene48391:CDS | 65.0% | |
| CGGGGCAATGCACGAGCACG+CGG | + | chr8.3:17044392-17044411 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 17044219 | 17045655 | 17044219 | ID=MS.gene48391 |
| chr8.3 | mRNA | 17044219 | 17045655 | 17044219 | ID=MS.gene48391.t1;Parent=MS.gene48391 |
| chr8.3 | exon | 17044219 | 17045655 | 17044219 | ID=MS.gene48391.t1.exon1;Parent=MS.gene48391.t1 |
| chr8.3 | CDS | 17044219 | 17045655 | 17044219 | ID=cds.MS.gene48391.t1;Parent=MS.gene48391.t1 |
| Gene Sequence |
| Protein sequence |
