Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48441.t1 | XP_003602950.1 | 94.5 | 362 | 20 | 0 | 1 | 362 | 1 | 362 | 7.90E-177 | 629.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48441.t1 | Q6YXH8 | 51.3 | 279 | 115 | 6 | 58 | 328 | 60 | 325 | 2.2e-66 | 254.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48441.t1 | G7J576 | 94.5 | 362 | 20 | 0 | 1 | 362 | 1 | 362 | 5.7e-177 | 629.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene029573 | MS.gene48441 | PPI |
| MS.gene48441 | MS.gene065674 | PPI |
| MS.gene029005 | MS.gene48441 | PPI |
| MS.gene71698 | MS.gene48441 | PPI |
| MS.gene043340 | MS.gene48441 | PPI |
| MS.gene92988 | MS.gene48441 | PPI |
| MS.gene35752 | MS.gene48441 | PPI |
| MS.gene31553 | MS.gene48441 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48441.t1 | MTR_3g100710 | 95.304 | 362 | 17 | 0 | 1 | 362 | 1 | 362 | 0.0 | 645 |
| MS.gene48441.t1 | MTR_3g100710 | 87.569 | 362 | 16 | 1 | 1 | 362 | 1 | 333 | 0.0 | 566 |
| MS.gene48441.t1 | MTR_4g080990 | 75.824 | 364 | 64 | 5 | 1 | 362 | 1 | 342 | 0.0 | 526 |
| MS.gene48441.t1 | MTR_5g032550 | 51.111 | 360 | 148 | 11 | 1 | 354 | 1 | 338 | 5.97e-104 | 310 |
| MS.gene48441.t1 | MTR_5g065830 | 48.588 | 354 | 166 | 8 | 3 | 352 | 4 | 345 | 1.93e-102 | 306 |
| MS.gene48441.t1 | MTR_5g032550 | 54.264 | 258 | 102 | 5 | 1 | 253 | 1 | 247 | 3.15e-82 | 251 |
| MS.gene48441.t1 | MTR_8g068950 | 40.850 | 306 | 157 | 6 | 65 | 352 | 62 | 361 | 1.15e-63 | 207 |
| MS.gene48441.t1 | MTR_8g063120 | 42.241 | 232 | 131 | 2 | 62 | 291 | 59 | 289 | 1.92e-53 | 180 |
| MS.gene48441.t1 | MTR_8g063120 | 47.027 | 185 | 97 | 1 | 62 | 246 | 59 | 242 | 9.88e-53 | 176 |
| MS.gene48441.t1 | MTR_1g107535 | 36.364 | 297 | 174 | 7 | 62 | 352 | 72 | 359 | 9.48e-51 | 174 |
| MS.gene48441.t1 | MTR_5g035360 | 37.024 | 289 | 156 | 4 | 9 | 295 | 12 | 276 | 3.03e-50 | 171 |
| MS.gene48441.t1 | MTR_4g094942 | 37.786 | 262 | 154 | 4 | 95 | 352 | 80 | 336 | 1.73e-49 | 170 |
| MS.gene48441.t1 | MTR_3g102310 | 37.165 | 261 | 156 | 5 | 96 | 353 | 84 | 339 | 5.26e-46 | 160 |
| MS.gene48441.t1 | MTR_5g015670 | 39.196 | 199 | 113 | 3 | 95 | 290 | 101 | 294 | 5.31e-37 | 137 |
| MS.gene48441.t1 | MTR_2g011500 | 35.268 | 224 | 131 | 5 | 99 | 319 | 86 | 298 | 2.30e-35 | 131 |
| MS.gene48441.t1 | MTR_2g089490 | 32.069 | 290 | 172 | 8 | 74 | 353 | 28 | 302 | 2.38e-35 | 131 |
| MS.gene48441.t1 | MTR_2g089490 | 31.597 | 288 | 173 | 8 | 74 | 353 | 28 | 299 | 2.23e-33 | 125 |
| MS.gene48441.t1 | MTR_3g103080 | 34.440 | 241 | 128 | 6 | 8 | 246 | 1 | 213 | 5.35e-31 | 120 |
| MS.gene48441.t1 | MTR_4g095790 | 29.915 | 234 | 144 | 7 | 97 | 319 | 68 | 292 | 3.36e-15 | 75.9 |
| MS.gene48441.t1 | MTR_3g060770 | 31.765 | 170 | 102 | 5 | 92 | 255 | 56 | 217 | 3.99e-15 | 75.5 |
| MS.gene48441.t1 | MTR_3g107970 | 29.121 | 182 | 116 | 4 | 74 | 251 | 225 | 397 | 6.65e-15 | 76.3 |
| MS.gene48441.t1 | MTR_1g011470 | 28.492 | 179 | 123 | 3 | 73 | 251 | 172 | 345 | 1.59e-14 | 74.7 |
| MS.gene48441.t1 | MTR_3g060820 | 30.000 | 170 | 105 | 5 | 92 | 255 | 46 | 207 | 2.80e-13 | 69.7 |
| MS.gene48441.t1 | MTR_3g061680 | 30.286 | 175 | 107 | 6 | 92 | 258 | 46 | 213 | 3.15e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48441.t1 | AT5G65420 | 50.545 | 275 | 118 | 6 | 62 | 332 | 42 | 302 | 3.25e-82 | 253 |
| MS.gene48441.t1 | AT5G65420 | 49.123 | 285 | 117 | 7 | 62 | 332 | 42 | 312 | 4.27e-81 | 250 |
| MS.gene48441.t1 | AT2G22490 | 45.338 | 311 | 159 | 5 | 26 | 329 | 25 | 331 | 6.03e-81 | 251 |
| MS.gene48441.t1 | AT2G22490 | 45.016 | 311 | 161 | 4 | 26 | 329 | 25 | 332 | 1.35e-80 | 251 |
| MS.gene48441.t1 | AT5G10440 | 54.545 | 231 | 102 | 1 | 59 | 289 | 31 | 258 | 2.21e-78 | 243 |
| MS.gene48441.t1 | AT5G65420 | 48.708 | 271 | 118 | 5 | 10 | 278 | 9 | 260 | 1.58e-76 | 237 |
| MS.gene48441.t1 | AT5G10440 | 56.983 | 179 | 77 | 0 | 59 | 237 | 31 | 209 | 1.57e-66 | 210 |
| MS.gene48441.t1 | AT5G65420 | 55.932 | 177 | 77 | 1 | 62 | 237 | 42 | 218 | 4.37e-62 | 199 |
| MS.gene48441.t1 | AT1G70210 | 44.444 | 243 | 127 | 3 | 57 | 295 | 45 | 283 | 5.44e-62 | 202 |
| MS.gene48441.t1 | AT3G50070 | 41.518 | 224 | 120 | 4 | 97 | 317 | 86 | 301 | 2.78e-46 | 162 |
| MS.gene48441.t1 | AT4G34160 | 39.604 | 202 | 119 | 2 | 97 | 296 | 87 | 287 | 3.15e-45 | 159 |
| MS.gene48441.t1 | AT5G67260 | 39.474 | 228 | 122 | 6 | 97 | 319 | 96 | 312 | 3.45e-43 | 154 |
| MS.gene48441.t1 | AT5G67260 | 39.207 | 227 | 124 | 5 | 97 | 319 | 96 | 312 | 7.71e-43 | 154 |
| MS.gene48441.t1 | AT4G37630 | 43.421 | 152 | 84 | 2 | 101 | 251 | 76 | 226 | 4.16e-32 | 121 |
| MS.gene48441.t1 | AT4G03270 | 31.338 | 284 | 168 | 11 | 74 | 352 | 35 | 296 | 3.09e-31 | 120 |
| MS.gene48441.t1 | AT4G37630 | 42.857 | 154 | 84 | 3 | 101 | 251 | 76 | 228 | 7.44e-31 | 118 |
| MS.gene48441.t1 | AT4G37630 | 42.857 | 154 | 84 | 3 | 101 | 251 | 76 | 228 | 2.90e-30 | 118 |
| MS.gene48441.t1 | AT4G03270 | 31.338 | 284 | 167 | 12 | 74 | 352 | 35 | 295 | 2.42e-29 | 115 |
| MS.gene48441.t1 | AT5G02110 | 26.383 | 235 | 159 | 6 | 64 | 294 | 45 | 269 | 3.75e-18 | 84.7 |
| MS.gene48441.t1 | AT1G20610 | 31.429 | 210 | 127 | 8 | 82 | 288 | 197 | 392 | 1.20e-15 | 78.2 |
| MS.gene48441.t1 | AT1G77390 | 29.609 | 179 | 119 | 4 | 74 | 251 | 190 | 362 | 9.81e-15 | 75.5 |
| MS.gene48441.t1 | AT5G02110 | 30.612 | 147 | 96 | 3 | 140 | 286 | 92 | 232 | 1.02e-14 | 74.3 |
| MS.gene48441.t1 | AT4G37490 | 29.143 | 175 | 114 | 4 | 77 | 251 | 179 | 343 | 1.47e-14 | 75.1 |
| MS.gene48441.t1 | AT3G11520 | 30.058 | 173 | 109 | 4 | 91 | 260 | 185 | 348 | 1.63e-14 | 74.7 |
| MS.gene48441.t1 | AT3G11520 | 30.058 | 173 | 109 | 4 | 91 | 260 | 185 | 348 | 2.59e-14 | 73.9 |
| MS.gene48441.t1 | AT1G76310 | 26.728 | 217 | 149 | 4 | 72 | 288 | 187 | 393 | 2.00e-13 | 71.6 |
| MS.gene48441.t1 | AT1G76310 | 28.889 | 180 | 118 | 4 | 72 | 251 | 187 | 356 | 5.71e-13 | 70.1 |
Find 79 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGCAGGTCTTGACTTCT+TGG | 0.156748 | 3.1:-80066433 | MS.gene48441:intron |
| TCCTCAGCCTCTTGATTTGC+AGG | 0.243856 | 3.1:-80066893 | MS.gene48441:intron |
| TAGGTTGCAGTTTGGAGATT+TGG | 0.254751 | 3.1:-80067625 | MS.gene48441:CDS |
| GGCTGTAGCTTGCTTATCTT+TGG | 0.277760 | 3.1:-80066941 | MS.gene48441:CDS |
| GTTCGAGCACATTTCGGTTT+TGG | 0.278825 | 3.1:-80067148 | MS.gene48441:CDS |
| GAATCGATCCAAGTAATTAA+TGG | 0.321350 | 3.1:+80067105 | None:intergenic |
| ACGAGGATTTGTGGCGTTCT+AGG | 0.359940 | 3.1:-80067776 | MS.gene48441:CDS |
| TTATCTATCCATTAATTACT+TGG | 0.373505 | 3.1:-80067113 | MS.gene48441:CDS |
| GTAGTAGCCCAGATGCTAAA+AGG | 0.388944 | 3.1:-80065781 | MS.gene48441:CDS |
| CACTGTTCAATGACATCTCT+TGG | 0.397078 | 3.1:+80065945 | None:intergenic |
| TTTGCTACCATCAATTGCTT+GGG | 0.406060 | 3.1:+80066356 | None:intergenic |
| AAACATTTAGGTACCTTTGA+TGG | 0.406098 | 3.1:+80066574 | None:intergenic |
| TATTTGAATAGGTTGCAGTT+TGG | 0.406265 | 3.1:-80067633 | MS.gene48441:CDS |
| CTGGTGCTGATTATTTGAAT+AGG | 0.407191 | 3.1:-80067644 | MS.gene48441:CDS |
| CTCTGCAATGGCAACTCATC+AGG | 0.411138 | 3.1:+80067714 | None:intergenic |
| ATTTGCTACCATCAATTGCT+TGG | 0.417048 | 3.1:+80066355 | None:intergenic |
| CTGTGGCAACATGTGTTGTT+GGG | 0.427417 | 3.1:-80066383 | MS.gene48441:CDS |
| TTATAGGTTCGAGCACATTT+CGG | 0.428580 | 3.1:-80067154 | MS.gene48441:intron |
| TGAATATGGTGGTGGTGGTT+CGG | 0.429440 | 3.1:-80067808 | MS.gene48441:CDS |
| ATTATTGAAGTGTGTTGAAA+AGG | 0.434517 | 3.1:-80065969 | MS.gene48441:CDS |
| TTTAGCTTCAAACACAAACT+TGG | 0.447842 | 3.1:+80066760 | None:intergenic |
| AGCTAAAACCATTCAGAGAA+TGG | 0.449900 | 3.1:-80066744 | MS.gene48441:CDS |
| AACACACCCATTGGGCTTTG+AGG | 0.450882 | 3.1:+80065878 | None:intergenic |
| ATTGCAGAGTGAAGAGTGTT+TGG | 0.451360 | 3.1:-80067700 | MS.gene48441:CDS |
| CATCATCATTAATCTTAGAA+AGG | 0.451623 | 3.1:+80066651 | None:intergenic |
| TAAAAGCTCCATTCTCTGAA+TGG | 0.457326 | 3.1:+80066736 | None:intergenic |
| AACACCATCATAACGTTGTT+GGG | 0.457610 | 3.1:+80067737 | None:intergenic |
| GACACCAATGCTGGTGGTGG+TGG | 0.467695 | 3.1:-80065824 | MS.gene48441:CDS |
| TGGTGGTGGTGGTTCGGTGG+AGG | 0.471956 | 3.1:-80067802 | MS.gene48441:CDS |
| AAACATTCAATGAAGGAGAA+TGG | 0.477187 | 3.1:+80066674 | None:intergenic |
| GGGGAAACCCAAGCAATTGA+TGG | 0.479575 | 3.1:-80066363 | MS.gene48441:CDS |
| AATGTATCCAACACACCCAT+TGG | 0.480352 | 3.1:+80065869 | None:intergenic |
| AGAGTGTTTGGTTCTGATGT+TGG | 0.485214 | 3.1:-80067688 | MS.gene48441:CDS |
| TGGAGGTGTACGAGGATTTG+TGG | 0.493364 | 3.1:-80067785 | MS.gene48441:CDS |
| AGCTTGGACAATGCAATTGT+TGG | 0.494353 | 3.1:-80066962 | MS.gene48441:CDS |
| GAACACCATCATAACGTTGT+TGG | 0.495114 | 3.1:+80067736 | None:intergenic |
| GCTGTGGCAACATGTGTTGT+TGG | 0.496061 | 3.1:-80066384 | MS.gene48441:CDS |
| TCTGATTCAATACATAGAAA+AGG | 0.496974 | 3.1:-80066322 | MS.gene48441:intron |
| ATTGGGCTTTGAGGCACACT+AGG | 0.501893 | 3.1:+80065887 | None:intergenic |
| AATTTCAGAAGGGAAGAGCT+TGG | 0.509011 | 3.1:-80066978 | MS.gene48441:intron |
| GATGGTGAATATGGTGGTGG+TGG | 0.511384 | 3.1:-80067813 | MS.gene48441:CDS |
| ATGTATCCAACACACCCATT+GGG | 0.513076 | 3.1:+80065870 | None:intergenic |
| ACAGCTGCTGCAATCTCTGA+TGG | 0.518373 | 3.1:+80066402 | None:intergenic |
| CTACAAAAGCTCTGATCCAC+AGG | 0.518487 | 3.1:+80065742 | None:intergenic |
| TTTGATGATGGTGAATATGG+TGG | 0.519686 | 3.1:-80067819 | MS.gene48441:CDS |
| CTAGAAACACAATCAAAACT+TGG | 0.521362 | 3.1:+80067873 | None:intergenic |
| AGAAAGGAAACATTCAATGA+AGG | 0.530701 | 3.1:+80066667 | None:intergenic |
| ATATGGTGGTGGTGGTTCGG+TGG | 0.533539 | 3.1:-80067805 | MS.gene48441:CDS |
| TGAACCACCACCACCAGCAT+TGG | 0.536808 | 3.1:+80065820 | None:intergenic |
| AGTCATCGATTGGATTCAAA+AGG | 0.537030 | 3.1:-80067583 | MS.gene48441:intron |
| ACCTGCAAATCAAGAGGCTG+AGG | 0.539718 | 3.1:+80066892 | None:intergenic |
| CTAGAAATGAAGTCATCGAT+TGG | 0.540927 | 3.1:-80067593 | MS.gene48441:CDS |
| TAGTACTCAGCACATTGAAG+TGG | 0.542367 | 3.1:-80066715 | MS.gene48441:CDS |
| GATGATGGTGAATATGGTGG+TGG | 0.549715 | 3.1:-80067816 | MS.gene48441:CDS |
| CAGGGAATTCATACACAGAA+AGG | 0.549830 | 3.1:+80067083 | None:intergenic |
| AGTGTGCCTCAAAGCCCAAT+GGG | 0.552076 | 3.1:-80065884 | MS.gene48441:CDS |
| AAAGAGTGTCAGCAATGGCC+TGG | 0.553578 | 3.1:-80067663 | MS.gene48441:CDS |
| ATCAGAGATTGCAGCAGCTG+TGG | 0.553736 | 3.1:-80066400 | MS.gene48441:CDS |
| ATGACCCAACAACGTTATGA+TGG | 0.554188 | 3.1:-80067741 | MS.gene48441:CDS |
| TAGTGTGCCTCAAAGCCCAA+TGG | 0.559807 | 3.1:-80065885 | MS.gene48441:CDS |
| TATCTTCTTCAGTGCAAAGA+AGG | 0.566069 | 3.1:+80067850 | None:intergenic |
| TCAAAGCCCAATGGGTGTGT+TGG | 0.579780 | 3.1:-80065876 | MS.gene48441:CDS |
| CTTATATCAAGCACCATCAA+AGG | 0.583083 | 3.1:-80066587 | MS.gene48441:intron |
| TCATTGAACAGTGTGTTCAC+TGG | 0.586627 | 3.1:-80065935 | MS.gene48441:CDS |
| AAACACTCTTCACTCTGCAA+TGG | 0.596088 | 3.1:+80067702 | None:intergenic |
| GAACAGTGTGTTCACTGGCA+AGG | 0.596096 | 3.1:-80065930 | MS.gene48441:CDS |
| TTGGGCTTTGAGGCACACTA+GGG | 0.596531 | 3.1:+80065888 | None:intergenic |
| ATCTTTGGCAGCTAAAGTAG+AGG | 0.600255 | 3.1:-80066926 | MS.gene48441:CDS |
| AATCCTACCTGCAAATCAAG+AGG | 0.610223 | 3.1:+80066886 | None:intergenic |
| CTATTCAAATAATCAGCACC+AGG | 0.612948 | 3.1:+80067645 | None:intergenic |
| ATGATGATAAGAGTTCATCA+AGG | 0.613251 | 3.1:-80066634 | MS.gene48441:CDS |
| TGGTTCGGTGGAGGTGTACG+AGG | 0.618407 | 3.1:-80067793 | MS.gene48441:CDS |
| GATGACACCAATGCTGGTGG+TGG | 0.635406 | 3.1:-80065827 | MS.gene48441:CDS |
| AAAAGTGATGACACCAATGC+TGG | 0.640482 | 3.1:-80065833 | MS.gene48441:CDS |
| ATGGATAGATAAGCACAAAG+AGG | 0.659013 | 3.1:+80067124 | None:intergenic |
| TGTGGCAACATGTGTTGTTG+GGG | 0.663318 | 3.1:-80066382 | MS.gene48441:CDS |
| AGGAAGCTAAACAAAACCTG+TGG | 0.680338 | 3.1:-80065758 | MS.gene48441:CDS |
| GTAGCCCAGATGCTAAAAGG+AGG | 0.696973 | 3.1:-80065778 | MS.gene48441:CDS |
| AGTGATGACACCAATGCTGG+TGG | 0.729525 | 3.1:-80065830 | MS.gene48441:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAGTTGATTAATTTTGA+TGG | - | chr3.1:80067157-80067176 | MS.gene48441:intron | 15.0% |
| !!! | TTTTATGAAATCTTTTTGAT+GGG | - | chr3.1:80066123-80066142 | MS.gene48441:intron | 15.0% |
| !!! | TTTTTATGAAATCTTTTTGA+TGG | - | chr3.1:80066122-80066141 | MS.gene48441:intron | 15.0% |
| !! | AATACATAGAAAAGGTAAAA+TGG | - | chr3.1:80067307-80067326 | MS.gene48441:intron | 20.0% |
| !! | TATTAACAATGTGTTAATTG+TGG | - | chr3.1:80067615-80067634 | MS.gene48441:CDS | 20.0% |
| !! | TTATCTATCCATTAATTACT+TGG | - | chr3.1:80066508-80066527 | MS.gene48441:intron | 20.0% |
| !!! | CAATTTTCTTTGTGATTTAT+AGG | - | chr3.1:80066451-80066470 | MS.gene48441:intron | 20.0% |
| !!! | TTAATTTTTCATCAAAACAG+TGG | - | chr3.1:80066171-80066190 | MS.gene48441:intron | 20.0% |
| ! | AGTGAAAACAATCATGAATT+AGG | - | chr3.1:80067130-80067149 | MS.gene48441:CDS | 25.0% |
| ! | ATTATTGAAGTGTGTTGAAA+AGG | - | chr3.1:80067652-80067671 | MS.gene48441:CDS | 25.0% |
| ! | ATTGTGATATGTATCCATAA+AGG | + | chr3.1:80066241-80066260 | None:intergenic | 25.0% |
| ! | CATCATCATTAATCTTAGAA+AGG | + | chr3.1:80066973-80066992 | None:intergenic | 25.0% |
| ! | CTCATATAACAACTTAAACA+AGG | - | chr3.1:80067492-80067511 | MS.gene48441:intron | 25.0% |
| ! | GAAGTTCAACACAAAAAAAT+AGG | - | chr3.1:80066579-80066598 | MS.gene48441:intron | 25.0% |
| ! | TCGTTATTCATTAACTTACA+GGG | + | chr3.1:80066559-80066578 | None:intergenic | 25.0% |
| ! | TCTGATTCAATACATAGAAA+AGG | - | chr3.1:80067299-80067318 | MS.gene48441:intron | 25.0% |
| ! | TTATGTTTCCAATTTCAGAA+GGG | - | chr3.1:80066633-80066652 | MS.gene48441:CDS | 25.0% |
| ! | TTGTGATATGTATCCATAAA+GGG | + | chr3.1:80066240-80066259 | None:intergenic | 25.0% |
| ! | TTTAATGAACTATCCCTTTA+TGG | - | chr3.1:80066224-80066243 | MS.gene48441:intron | 25.0% |
| !! | ATATTGATTGTGAAAACTGA+AGG | - | chr3.1:80066085-80066104 | MS.gene48441:intron | 25.0% |
| !! | TACATTGTTTTCTTGTCATT+TGG | + | chr3.1:80067342-80067361 | None:intergenic | 25.0% |
| AAACATTCAATGAAGGAGAA+TGG | + | chr3.1:80066950-80066969 | None:intergenic | 30.0% | |
| AAACATTTAGGTACCTTTGA+TGG | + | chr3.1:80067050-80067069 | None:intergenic | 30.0% | |
| AACTTGTCAATTTCAATGCT+TGG | - | chr3.1:80066761-80066780 | MS.gene48441:CDS | 30.0% | |
| ACATAGAAAAGGTAAAATGG+TGG | - | chr3.1:80067310-80067329 | MS.gene48441:intron | 30.0% | |
| AGAAAGGAAACATTCAATGA+AGG | + | chr3.1:80066957-80066976 | None:intergenic | 30.0% | |
| ATGATGATAAGAGTTCATCA+AGG | - | chr3.1:80066987-80067006 | MS.gene48441:intron | 30.0% | |
| CTAGAAACACAATCAAAACT+TGG | + | chr3.1:80065751-80065770 | None:intergenic | 30.0% | |
| CTCGTTATTCATTAACTTAC+AGG | + | chr3.1:80066560-80066579 | None:intergenic | 30.0% | |
| GAATCGATCCAAGTAATTAA+TGG | + | chr3.1:80066519-80066538 | None:intergenic | 30.0% | |
| GTGTTAATTGTGGTTATTAC+AGG | - | chr3.1:80067625-80067644 | MS.gene48441:CDS | 30.0% | |
| GTTATGTTTCCAATTTCAGA+AGG | - | chr3.1:80066632-80066651 | MS.gene48441:CDS | 30.0% | |
| TAGCACATTTGATTGATGAA+TGG | - | chr3.1:80066348-80066367 | MS.gene48441:CDS | 30.0% | |
| TATTTGAATAGGTTGCAGTT+TGG | - | chr3.1:80065988-80066007 | MS.gene48441:intron | 30.0% | |
| TCATCAATTCATCAGATACA+AGG | + | chr3.1:80066309-80066328 | None:intergenic | 30.0% | |
| TTAGTTCATACATACTCTCA+AGG | - | chr3.1:80067380-80067399 | MS.gene48441:intron | 30.0% | |
| ! | ATAGGCTTTATATTCTGCAT+TGG | - | chr3.1:80066597-80066616 | MS.gene48441:CDS | 30.0% |
| ! | ATCCATTGCTTGATAACTAT+TGG | - | chr3.1:80066278-80066297 | MS.gene48441:intron | 30.0% |
| ! | ATTTTTCATCAAAACAGTGG+CGG | - | chr3.1:80066174-80066193 | MS.gene48441:intron | 30.0% |
| ! | TGATGAATTGATGACTTGAA+TGG | - | chr3.1:80066315-80066334 | MS.gene48441:intron | 30.0% |
| ! | TTTAGCTTCAAACACAAACT+TGG | + | chr3.1:80066864-80066883 | None:intergenic | 30.0% |
| !! | ATTGATGAATGGATTGAGAT+TGG | - | chr3.1:80066359-80066378 | MS.gene48441:CDS | 30.0% |
| !! | TGTTTTCTTGTCATTTGGAA+AGG | + | chr3.1:80067337-80067356 | None:intergenic | 30.0% |
| !!! | GTTTTTGATGATGGTGAATA+TGG | - | chr3.1:80065799-80065818 | MS.gene48441:CDS | 30.0% |
| AACACCATCATAACGTTGTT+GGG | + | chr3.1:80065887-80065906 | None:intergenic | 35.0% | |
| AGCTAAAACCATTCAGAGAA+TGG | - | chr3.1:80066877-80066896 | MS.gene48441:intron | 35.0% | |
| ATGGATAGATAAGCACAAAG+AGG | + | chr3.1:80066500-80066519 | None:intergenic | 35.0% | |
| CTAGAAATGAAGTCATCGAT+TGG | - | chr3.1:80066028-80066047 | MS.gene48441:intron | 35.0% | |
| CTATTCAAATAATCAGCACC+AGG | + | chr3.1:80065979-80065998 | None:intergenic | 35.0% | |
| CTTATATCAAGCACCATCAA+AGG | - | chr3.1:80067034-80067053 | MS.gene48441:intron | 35.0% | |
| GTCCAATAGTTATCAAGCAA+TGG | + | chr3.1:80066283-80066302 | None:intergenic | 35.0% | |
| TAAAAGCTCCATTCTCTGAA+TGG | + | chr3.1:80066888-80066907 | None:intergenic | 35.0% | |
| TATCTTCTTCAGTGCAAAGA+AGG | + | chr3.1:80065774-80065793 | None:intergenic | 35.0% | |
| TCACTTGAGCAATGAAGTTA+GGG | + | chr3.1:80067077-80067096 | None:intergenic | 35.0% | |
| TTATAGGTTCGAGCACATTT+CGG | - | chr3.1:80066467-80066486 | MS.gene48441:intron | 35.0% | |
| TTCACTTGAGCAATGAAGTT+AGG | + | chr3.1:80067078-80067097 | None:intergenic | 35.0% | |
| TTTGCTACCATCAATTGCTT+GGG | + | chr3.1:80067268-80067287 | None:intergenic | 35.0% | |
| ! | AGTCATCGATTGGATTCAAA+AGG | - | chr3.1:80066038-80066057 | MS.gene48441:intron | 35.0% |
| ! | ATGATTGTTTTCACTGCAAG+GGG | + | chr3.1:80067125-80067144 | None:intergenic | 35.0% |
| ! | ATTTGCTACCATCAATTGCT+TGG | + | chr3.1:80067269-80067288 | None:intergenic | 35.0% |
| ! | CATGATTGTTTTCACTGCAA+GGG | + | chr3.1:80067126-80067145 | None:intergenic | 35.0% |
| ! | GAGATTGGATTAGATTGGAT+TGG | - | chr3.1:80066374-80066393 | MS.gene48441:CDS | 35.0% |
| ! | GGATTGAGATTGGATTAGAT+TGG | - | chr3.1:80066369-80066388 | MS.gene48441:CDS | 35.0% |
| ! | GTTTGGAGATTTGGATTTTC+AGG | - | chr3.1:80066005-80066024 | MS.gene48441:intron | 35.0% |
| ! | TCATGATTGTTTTCACTGCA+AGG | + | chr3.1:80067127-80067146 | None:intergenic | 35.0% |
| !! | CTGGTGCTGATTATTTGAAT+AGG | - | chr3.1:80065977-80065996 | MS.gene48441:CDS | 35.0% |
| !! | GATAGCAGTGTTTTTGATGA+TGG | - | chr3.1:80065790-80065809 | MS.gene48441:CDS | 35.0% |
| !! | TTTGATGATGGTGAATATGG+TGG | - | chr3.1:80065802-80065821 | MS.gene48441:CDS | 35.0% |
| !!! | CGTTTTAATTGGGTTTGGAT+TGG | - | chr3.1:80066200-80066219 | MS.gene48441:intron | 35.0% |
| AAAAGTGATGACACCAATGC+TGG | - | chr3.1:80067788-80067807 | MS.gene48441:CDS | 40.0% | |
| AAACACTCTTCACTCTGCAA+TGG | + | chr3.1:80065922-80065941 | None:intergenic | 40.0% | |
| AATCCTACCTGCAAATCAAG+AGG | + | chr3.1:80066738-80066757 | None:intergenic | 40.0% | |
| AATGTATCCAACACACCCAT+TGG | + | chr3.1:80067755-80067774 | None:intergenic | 40.0% | |
| AATTTCAGAAGGGAAGAGCT+TGG | - | chr3.1:80066643-80066662 | MS.gene48441:CDS | 40.0% | |
| AGCTTGGACAATGCAATTGT+TGG | - | chr3.1:80066659-80066678 | MS.gene48441:CDS | 40.0% | |
| AGGAAGCTAAACAAAACCTG+TGG | - | chr3.1:80067863-80067882 | MS.gene48441:CDS | 40.0% | |
| AGTTAGGGAGGGAAACATTT+AGG | + | chr3.1:80067062-80067081 | None:intergenic | 40.0% | |
| ATCTTTGGCAGCTAAAGTAG+AGG | - | chr3.1:80066695-80066714 | MS.gene48441:CDS | 40.0% | |
| ATGACCCAACAACGTTATGA+TGG | - | chr3.1:80065880-80065899 | MS.gene48441:CDS | 40.0% | |
| ATGTATCCAACACACCCATT+GGG | + | chr3.1:80067754-80067773 | None:intergenic | 40.0% | |
| CACTGTTCAATGACATCTCT+TGG | + | chr3.1:80067679-80067698 | None:intergenic | 40.0% | |
| CAGGGAATTCATACACAGAA+AGG | + | chr3.1:80066541-80066560 | None:intergenic | 40.0% | |
| GAACACCATCATAACGTTGT+TGG | + | chr3.1:80065888-80065907 | None:intergenic | 40.0% | |
| TAGGTTGCAGTTTGGAGATT+TGG | - | chr3.1:80065996-80066015 | MS.gene48441:intron | 40.0% | |
| TAGTACTCAGCACATTGAAG+TGG | - | chr3.1:80066906-80066925 | MS.gene48441:CDS | 40.0% | |
| TCATTGAACAGTGTGTTCAC+TGG | - | chr3.1:80067686-80067705 | MS.gene48441:CDS | 40.0% | |
| TTGAGCAATGAAGTTAGGGA+GGG | + | chr3.1:80067073-80067092 | None:intergenic | 40.0% | |
| ! | TGATGGTGTGAATTCAATGC+AGG | - | chr3.1:80067174-80067193 | MS.gene48441:intron | 40.0% |
| !! | AAGCTCTTCCCTTCTGAAAT+TGG | + | chr3.1:80066644-80066663 | None:intergenic | 40.0% |
| !! | AGAGTGTTTGGTTCTGATGT+TGG | - | chr3.1:80065933-80065952 | MS.gene48441:CDS | 40.0% |
| !! | ATTGCAGAGTGAAGAGTGTT+TGG | - | chr3.1:80065921-80065940 | MS.gene48441:CDS | 40.0% |
| !! | CTTGATTTGCAGGTAGGATT+TGG | - | chr3.1:80066738-80066757 | MS.gene48441:CDS | 40.0% |
| !! | GTCGATTTTTGTGTGCAGAT+TGG | - | chr3.1:80066833-80066852 | MS.gene48441:intron | 40.0% |
| !! | TGGAAAAAGAGTGTCAGCAA+TGG | - | chr3.1:80065953-80065972 | MS.gene48441:CDS | 40.0% |
| CAATGCAGGTCTTGACTTCT+TGG | - | chr3.1:80067188-80067207 | MS.gene48441:intron | 45.0% | |
| CTTGAGCAATGAAGTTAGGG+AGG | + | chr3.1:80067074-80067093 | None:intergenic | 45.0% | |
| GTAGTAGCCCAGATGCTAAA+AGG | - | chr3.1:80067840-80067859 | MS.gene48441:CDS | 45.0% | |
| TTTCATCAAAACAGTGGCGG+CGG | - | chr3.1:80066177-80066196 | MS.gene48441:intron | 45.0% | |
| ! | AGCTTCCTCCTTTTAGCATC+TGG | + | chr3.1:80067851-80067870 | None:intergenic | 45.0% |
| ! | CTACAAAAGCTCTGATCCAC+AGG | + | chr3.1:80067882-80067901 | None:intergenic | 45.0% |
| ! | CTGTGGCAACATGTGTTGTT+GGG | - | chr3.1:80067238-80067257 | MS.gene48441:intron | 45.0% |
| ! | GATGATGGTGAATATGGTGG+TGG | - | chr3.1:80065805-80065824 | MS.gene48441:CDS | 45.0% |
| ! | GCTTCCTCCTTTTAGCATCT+GGG | + | chr3.1:80067850-80067869 | None:intergenic | 45.0% |
| ! | GTTCGAGCACATTTCGGTTT+TGG | - | chr3.1:80066473-80066492 | MS.gene48441:intron | 45.0% |
| ! | TGTGGCAACATGTGTTGTTG+GGG | - | chr3.1:80067239-80067258 | MS.gene48441:intron | 45.0% |
| ! | TTGTTTTCACTGCAAGGGGT+TGG | + | chr3.1:80067121-80067140 | None:intergenic | 45.0% |
| !! | GGCTGTAGCTTGCTTATCTT+TGG | - | chr3.1:80066680-80066699 | MS.gene48441:CDS | 45.0% |
| !! | TGAATATGGTGGTGGTGGTT+CGG | - | chr3.1:80065813-80065832 | MS.gene48441:CDS | 45.0% |
| AACACACCCATTGGGCTTTG+AGG | + | chr3.1:80067746-80067765 | None:intergenic | 50.0% | |
| ACAGCTGCTGCAATCTCTGA+TGG | + | chr3.1:80067222-80067241 | None:intergenic | 50.0% | |
| ACCTGCAAATCAAGAGGCTG+AGG | + | chr3.1:80066732-80066751 | None:intergenic | 50.0% | |
| ACGAGGATTTGTGGCGTTCT+AGG | - | chr3.1:80065845-80065864 | MS.gene48441:CDS | 50.0% | |
| AGTGATGACACCAATGCTGG+TGG | - | chr3.1:80067791-80067810 | MS.gene48441:CDS | 50.0% | |
| AGTGTGCCTCAAAGCCCAAT+GGG | - | chr3.1:80067737-80067756 | MS.gene48441:CDS | 50.0% | |
| ATCAGAGATTGCAGCAGCTG+TGG | - | chr3.1:80067221-80067240 | MS.gene48441:intron | 50.0% | |
| CTCTGCAATGGCAACTCATC+AGG | + | chr3.1:80065910-80065929 | None:intergenic | 50.0% | |
| GAACAGTGTGTTCACTGGCA+AGG | - | chr3.1:80067691-80067710 | MS.gene48441:CDS | 50.0% | |
| GCTGTGGCAACATGTGTTGT+TGG | - | chr3.1:80067237-80067256 | MS.gene48441:intron | 50.0% | |
| GGGGAAACCCAAGCAATTGA+TGG | - | chr3.1:80067258-80067277 | MS.gene48441:intron | 50.0% | |
| GTAGCCCAGATGCTAAAAGG+AGG | - | chr3.1:80067843-80067862 | MS.gene48441:CDS | 50.0% | |
| TAGTGTGCCTCAAAGCCCAA+TGG | - | chr3.1:80067736-80067755 | MS.gene48441:CDS | 50.0% | |
| TCAAAGCCCAATGGGTGTGT+TGG | - | chr3.1:80067745-80067764 | MS.gene48441:CDS | 50.0% | |
| ! | TGGAGGTGTACGAGGATTTG+TGG | - | chr3.1:80065836-80065855 | MS.gene48441:CDS | 50.0% |
| !! | AAAGAGTGTCAGCAATGGCC+TGG | - | chr3.1:80065958-80065977 | MS.gene48441:CDS | 50.0% |
| !! | ATTGGGCTTTGAGGCACACT+AGG | + | chr3.1:80067737-80067756 | None:intergenic | 50.0% |
| !! | CAGCCTCTTGATTTGCAGGT+AGG | - | chr3.1:80066732-80066751 | MS.gene48441:CDS | 50.0% |
| !! | GATGGTGAATATGGTGGTGG+TGG | - | chr3.1:80065808-80065827 | MS.gene48441:CDS | 50.0% |
| !! | TCCTCAGCCTCTTGATTTGC+AGG | - | chr3.1:80066728-80066747 | MS.gene48441:CDS | 50.0% |
| !! | TTGGGCTTTGAGGCACACTA+GGG | + | chr3.1:80067736-80067755 | None:intergenic | 50.0% |
| !!! | GGCGGCGTTTTAATTGGGTT+TGG | - | chr3.1:80066195-80066214 | MS.gene48441:intron | 50.0% |
| GATGACACCAATGCTGGTGG+TGG | - | chr3.1:80067794-80067813 | MS.gene48441:CDS | 55.0% | |
| TGAACCACCACCACCAGCAT+TGG | + | chr3.1:80067804-80067823 | None:intergenic | 55.0% | |
| !! | AGTGGCGGCGGCGTTTTAAT+TGG | - | chr3.1:80066189-80066208 | MS.gene48441:intron | 55.0% |
| !! | ATATGGTGGTGGTGGTTCGG+TGG | - | chr3.1:80065816-80065835 | MS.gene48441:CDS | 55.0% |
| !!! | GTGGCGGCGGCGTTTTAATT+GGG | - | chr3.1:80066190-80066209 | MS.gene48441:intron | 55.0% |
| !! | GACACCAATGCTGGTGGTGG+TGG | - | chr3.1:80067797-80067816 | MS.gene48441:CDS | 60.0% |
| !! | TGGTTCGGTGGAGGTGTACG+AGG | - | chr3.1:80065828-80065847 | MS.gene48441:CDS | 60.0% |
| !! | TGGTGGTGGTGGTTCGGTGG+AGG | - | chr3.1:80065819-80065838 | MS.gene48441:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 80065742 | 80067901 | 80065742 | ID=MS.gene48441 |
| chr3.1 | mRNA | 80065742 | 80067901 | 80065742 | ID=MS.gene48441.t1;Parent=MS.gene48441 |
| chr3.1 | exon | 80067584 | 80067901 | 80067584 | ID=MS.gene48441.t1.exon1;Parent=MS.gene48441.t1 |
| chr3.1 | CDS | 80067584 | 80067901 | 80067584 | ID=cds.MS.gene48441.t1;Parent=MS.gene48441.t1 |
| chr3.1 | exon | 80067084 | 80067170 | 80067084 | ID=MS.gene48441.t1.exon2;Parent=MS.gene48441.t1 |
| chr3.1 | CDS | 80067084 | 80067170 | 80067084 | ID=cds.MS.gene48441.t1;Parent=MS.gene48441.t1 |
| chr3.1 | exon | 80066894 | 80066992 | 80066894 | ID=MS.gene48441.t1.exon3;Parent=MS.gene48441.t1 |
| chr3.1 | CDS | 80066894 | 80066992 | 80066894 | ID=cds.MS.gene48441.t1;Parent=MS.gene48441.t1 |
| chr3.1 | exon | 80066588 | 80066792 | 80066588 | ID=MS.gene48441.t1.exon4;Parent=MS.gene48441.t1 |
| chr3.1 | CDS | 80066588 | 80066792 | 80066588 | ID=cds.MS.gene48441.t1;Parent=MS.gene48441.t1 |
| chr3.1 | exon | 80066323 | 80066447 | 80066323 | ID=MS.gene48441.t1.exon5;Parent=MS.gene48441.t1 |
| chr3.1 | CDS | 80066323 | 80066447 | 80066323 | ID=cds.MS.gene48441.t1;Parent=MS.gene48441.t1 |
| chr3.1 | exon | 80065742 | 80065996 | 80065742 | ID=MS.gene48441.t1.exon6;Parent=MS.gene48441.t1 |
| chr3.1 | CDS | 80065742 | 80065996 | 80065742 | ID=cds.MS.gene48441.t1;Parent=MS.gene48441.t1 |
| Gene Sequence |
| Protein sequence |
