Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48639.t1 | XP_013455242.1 | 99.1 | 864 | 8 | 0 | 1 | 864 | 53 | 916 | 0.00E+00 | 1721.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48639.t1 | Q7XZU3 | 75.6 | 868 | 207 | 3 | 1 | 864 | 45 | 911 | 0.0e+00 | 1338.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48639.t1 | A0A072UJJ8 | 99.1 | 864 | 8 | 0 | 1 | 864 | 53 | 916 | 0.0e+00 | 1721.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049368 | MS.gene48639 | 0.82345 | 1.38E-53 | -1.69E-46 |
| MS.gene049983 | MS.gene48639 | 0.808713 | 2.70E-50 | -1.69E-46 |
| MS.gene050654 | MS.gene48639 | 0.812923 | 3.32E-51 | -1.69E-46 |
| MS.gene052307 | MS.gene48639 | 0.829128 | 6.12E-55 | -1.69E-46 |
| MS.gene052434 | MS.gene48639 | 0.801316 | 9.54E-49 | -1.69E-46 |
| MS.gene052609 | MS.gene48639 | 0.837084 | 6.40E-57 | -1.69E-46 |
| MS.gene053381 | MS.gene48639 | 0.813714 | 2.23E-51 | -1.69E-46 |
| MS.gene058592 | MS.gene48639 | 0.801516 | 8.68E-49 | -1.69E-46 |
| MS.gene060435 | MS.gene48639 | 0.811511 | 6.75E-51 | -1.69E-46 |
| MS.gene060785 | MS.gene48639 | 0.806891 | 6.60E-50 | -1.69E-46 |
| MS.gene060933 | MS.gene48639 | 0.833676 | 4.65E-56 | -1.69E-46 |
| MS.gene060935 | MS.gene48639 | 0.807113 | 5.92E-50 | -1.69E-46 |
| MS.gene060937 | MS.gene48639 | 0.833759 | 4.43E-56 | -1.69E-46 |
| MS.gene061100 | MS.gene48639 | 0.80669 | 7.28E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48639.t1 | MTR_4g032925 | 99.074 | 864 | 8 | 0 | 1 | 864 | 53 | 916 | 0.0 | 1791 |
| MS.gene48639.t1 | MTR_4g032925 | 99.124 | 685 | 6 | 0 | 1 | 685 | 53 | 737 | 0.0 | 1416 |
| MS.gene48639.t1 | MTR_4g032935 | 97.633 | 676 | 16 | 0 | 189 | 864 | 16 | 691 | 0.0 | 1379 |
| MS.gene48639.t1 | MTR_4g124630 | 47.706 | 763 | 344 | 12 | 2 | 745 | 37 | 763 | 0.0 | 703 |
| MS.gene48639.t1 | MTR_4g124630 | 47.706 | 763 | 344 | 12 | 2 | 745 | 37 | 763 | 0.0 | 703 |
| MS.gene48639.t1 | MTR_4g124630 | 47.706 | 763 | 344 | 12 | 2 | 745 | 37 | 763 | 0.0 | 703 |
| MS.gene48639.t1 | MTR_8g022740 | 53.796 | 619 | 262 | 7 | 1 | 609 | 42 | 646 | 0.0 | 661 |
| MS.gene48639.t1 | MTR_8g022740 | 53.659 | 615 | 262 | 6 | 4 | 609 | 1 | 601 | 0.0 | 657 |
| MS.gene48639.t1 | MTR_8g022740 | 53.183 | 487 | 205 | 6 | 132 | 609 | 1 | 473 | 1.20e-168 | 504 |
| MS.gene48639.t1 | MTR_5g023960 | 30.945 | 307 | 183 | 11 | 61 | 359 | 63 | 348 | 7.04e-31 | 129 |
| MS.gene48639.t1 | MTR_5g023960 | 35.659 | 129 | 81 | 2 | 461 | 588 | 388 | 515 | 3.22e-14 | 77.0 |
| MS.gene48639.t1 | MTR_5g023960 | 29.967 | 307 | 187 | 10 | 61 | 359 | 63 | 349 | 7.92e-30 | 126 |
| MS.gene48639.t1 | MTR_5g023960 | 35.659 | 129 | 81 | 2 | 461 | 588 | 389 | 516 | 2.96e-14 | 77.0 |
| MS.gene48639.t1 | MTR_4g087530 | 25.051 | 487 | 262 | 18 | 78 | 533 | 93 | 507 | 5.83e-24 | 109 |
| MS.gene48639.t1 | MTR_7g068890 | 26.506 | 332 | 217 | 8 | 48 | 373 | 51 | 361 | 1.96e-23 | 106 |
| MS.gene48639.t1 | MTR_7g068890 | 29.197 | 137 | 95 | 2 | 461 | 596 | 387 | 522 | 4.04e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48639.t1 | AT1G22620 | 75.806 | 868 | 205 | 4 | 1 | 864 | 45 | 911 | 0.0 | 1384 |
| MS.gene48639.t1 | AT3G14205 | 53.257 | 614 | 273 | 4 | 2 | 612 | 31 | 633 | 0.0 | 683 |
| MS.gene48639.t1 | AT5G20840 | 46.053 | 760 | 367 | 11 | 2 | 750 | 36 | 763 | 0.0 | 649 |
| MS.gene48639.t1 | AT3G43220 | 52.596 | 597 | 272 | 3 | 2 | 597 | 27 | 613 | 0.0 | 648 |
| MS.gene48639.t1 | AT3G43220 | 52.596 | 597 | 272 | 3 | 2 | 597 | 27 | 613 | 0.0 | 647 |
| MS.gene48639.t1 | AT3G43220 | 52.596 | 597 | 272 | 3 | 2 | 597 | 27 | 613 | 0.0 | 647 |
| MS.gene48639.t1 | AT1G17340 | 42.728 | 777 | 376 | 13 | 2 | 770 | 31 | 746 | 0.0 | 595 |
| MS.gene48639.t1 | AT3G14205 | 53.518 | 469 | 204 | 4 | 147 | 612 | 1 | 458 | 2.90e-171 | 510 |
| MS.gene48639.t1 | AT3G51830 | 28.135 | 327 | 211 | 8 | 52 | 373 | 52 | 359 | 4.63e-32 | 133 |
| MS.gene48639.t1 | AT3G51830 | 34.351 | 131 | 84 | 2 | 461 | 590 | 385 | 514 | 3.60e-14 | 77.0 |
| MS.gene48639.t1 | AT3G51460 | 28.402 | 338 | 212 | 11 | 44 | 373 | 47 | 362 | 7.76e-31 | 129 |
| MS.gene48639.t1 | AT3G51460 | 36.585 | 123 | 76 | 2 | 461 | 582 | 388 | 509 | 6.48e-14 | 76.3 |
| MS.gene48639.t1 | AT5G66020 | 26.620 | 432 | 259 | 15 | 44 | 453 | 44 | 439 | 4.41e-30 | 127 |
| MS.gene48639.t1 | AT5G66020 | 34.959 | 123 | 78 | 2 | 461 | 582 | 386 | 507 | 6.14e-13 | 73.2 |
| MS.gene48639.t1 | AT3G59770 | 23.709 | 523 | 313 | 19 | 3 | 498 | 25 | 488 | 8.36e-20 | 95.9 |
| MS.gene48639.t1 | AT3G59770 | 23.709 | 523 | 313 | 19 | 3 | 498 | 25 | 488 | 1.01e-19 | 95.9 |
| MS.gene48639.t1 | AT3G59770 | 24.351 | 308 | 172 | 9 | 210 | 498 | 20 | 285 | 2.63e-14 | 78.2 |
| MS.gene48639.t1 | AT3G59770 | 23.934 | 305 | 171 | 9 | 213 | 498 | 1 | 263 | 4.09e-13 | 74.3 |
Find 176 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAAATTAAGAACAATAAT+TGG | 0.188213 | 4.1:+67905291 | None:intergenic |
| GAACCAAATCTTAACTCTTC+TGG | 0.212025 | 4.1:-67901056 | MS.gene48639:CDS |
| TGTTCCATTGCCAGATTCTT+AGG | 0.232529 | 4.1:-67901710 | MS.gene48639:intron |
| GGCTCTCTGCTGGTAGAATT+TGG | 0.233290 | 4.1:+67904100 | None:intergenic |
| CAGGCTCGCTTATCGATCTT+TGG | 0.233312 | 4.1:-67906024 | MS.gene48639:CDS |
| TTTGCAAACTTTGCATTATA+GGG | 0.252847 | 4.1:+67908293 | None:intergenic |
| TGGTTGACGAGGTGGTTAAT+TGG | 0.279765 | 4.1:-67898596 | MS.gene48639:CDS |
| AATGGATATGTATCAAAGTA+TGG | 0.291152 | 4.1:-67902351 | MS.gene48639:CDS |
| TCTCAGCAAGGTCTTCAAAA+TGG | 0.305413 | 4.1:+67905325 | None:intergenic |
| GATTATTATCTCCATGTATC+TGG | 0.306301 | 4.1:-67901638 | MS.gene48639:CDS |
| CTCCCAGAAGAGTTAAGATT+TGG | 0.320079 | 4.1:+67901053 | None:intergenic |
| GCTTATGGCCTACAAGCTTT+AGG | 0.323564 | 4.1:-67902446 | MS.gene48639:CDS |
| AGGAAGGAAAACCTGCTCTA+TGG | 0.327309 | 4.1:-67901673 | MS.gene48639:CDS |
| TACAGCTTAAAAGCCCAAAT+TGG | 0.331586 | 4.1:-67899758 | MS.gene48639:CDS |
| TGGACTATAGCTTTGGTTCA+TGG | 0.334779 | 4.1:-67908166 | MS.gene48639:CDS |
| AAGCAAGTCGGCCAATGTTT+TGG | 0.336471 | 4.1:-67903926 | MS.gene48639:CDS |
| AGAGATCTGACAGCTAGTTC+TGG | 0.339935 | 4.1:-67902653 | MS.gene48639:CDS |
| TAGTATTGCAGCAGCTCTAA+TGG | 0.348394 | 4.1:-67902369 | MS.gene48639:CDS |
| GTTTGCCCTCTTTACGATGT+TGG | 0.352529 | 4.1:+67903840 | None:intergenic |
| GTTACTAAGCGCAGACAAAT+TGG | 0.355249 | 4.1:-67908575 | MS.gene48639:CDS |
| TTCCACTTTCCCTGCCTCTC+TGG | 0.358086 | 4.1:+67902158 | None:intergenic |
| GGTTGACGAGGTGGTTAATT+GGG | 0.358437 | 4.1:-67898595 | MS.gene48639:CDS |
| TTACAAATTATGTCAGGCTT+AGG | 0.358704 | 4.1:+67905485 | None:intergenic |
| CTACTGTCAGGATCCACTTT+TGG | 0.359333 | 4.1:+67902389 | None:intergenic |
| GAAGACCTTGCTGAGAGATA+TGG | 0.363605 | 4.1:-67905318 | MS.gene48639:CDS |
| TTTGCCCTCTTTACGATGTT+GGG | 0.369497 | 4.1:+67903841 | None:intergenic |
| AACCTTCTTCATACTTTCTC+TGG | 0.369565 | 4.1:+67899727 | None:intergenic |
| AACCAAATCTTAACTCTTCT+GGG | 0.378330 | 4.1:-67901055 | MS.gene48639:CDS |
| AGGCTCGCTTATCGATCTTT+GGG | 0.382228 | 4.1:-67906023 | MS.gene48639:CDS |
| GCCATCTTAGATTTATTCAC+TGG | 0.391372 | 4.1:-67904080 | MS.gene48639:CDS |
| CACCATATGGACTATAGCTT+TGG | 0.397838 | 4.1:-67908173 | MS.gene48639:CDS |
| GCTCTCTTTCATGATCATCT+TGG | 0.409234 | 4.1:+67898777 | None:intergenic |
| TACCAACTGCATTGACTGCT+TGG | 0.413476 | 4.1:-67902492 | MS.gene48639:CDS |
| TTGTAGGCCATAAGCATATT+GGG | 0.414917 | 4.1:+67902454 | None:intergenic |
| TAGTGAAGGGCTAAATTCTA+TGG | 0.415541 | 4.1:-67902606 | MS.gene48639:CDS |
| TCATCTCTGCAAGCTGGTAC+AGG | 0.417780 | 4.1:+67901011 | None:intergenic |
| CTTGTAGGCCATAAGCATAT+TGG | 0.419524 | 4.1:+67902453 | None:intergenic |
| GATGCTCTTGCGCAGCAGTA+TGG | 0.421487 | 4.1:-67902326 | MS.gene48639:CDS |
| TACAAATTATGTCAGGCTTA+GGG | 0.424911 | 4.1:+67905486 | None:intergenic |
| TTTGAAATTATTAATGAAGC+TGG | 0.425355 | 4.1:-67898722 | MS.gene48639:CDS |
| CATGTGGAATTGTAATCAAT+TGG | 0.433559 | 4.1:+67908513 | None:intergenic |
| TGCGAACCTGATCAGAAGCC+AGG | 0.435093 | 4.1:-67900909 | MS.gene48639:CDS |
| GCCAAAAGCTCATCATATCC+TGG | 0.437998 | 4.1:+67898559 | None:intergenic |
| TATTGTTCTTAATTTGATCA+AGG | 0.447253 | 4.1:-67905286 | MS.gene48639:intron |
| AACCAAAGCTATAGTCCATA+TGG | 0.447803 | 4.1:+67908171 | None:intergenic |
| AGAGATGGAAGCAGCTCTAA+AGG | 0.450200 | 4.1:-67898690 | MS.gene48639:CDS |
| ACAGGTGTTTCCAGAGAGGC+AGG | 0.450900 | 4.1:-67902168 | MS.gene48639:intron |
| AACTTGAATTGGCTTTCCTC+TGG | 0.451572 | 4.1:-67899639 | MS.gene48639:CDS |
| ATATTCTTACAAATTATGTC+AGG | 0.453480 | 4.1:+67905479 | None:intergenic |
| GAGATCTGACAGCTAGTTCT+GGG | 0.455038 | 4.1:-67902652 | MS.gene48639:CDS |
| ATAAGACATTACGCTGCATC+TGG | 0.455484 | 4.1:+67900858 | None:intergenic |
| CTAGATGCAATAACACCATA+TGG | 0.464838 | 4.1:-67908186 | MS.gene48639:CDS |
| AGGAGGACTCGCAACTTCTC+AGG | 0.467588 | 4.1:+67901596 | None:intergenic |
| GGACGCCAGCTTCATGCAAT+GGG | 0.468488 | 4.1:-67902425 | MS.gene48639:CDS |
| TCTGGGGATCTTGCAAGGCT+TGG | 0.471116 | 4.1:-67902635 | MS.gene48639:CDS |
| GGCCAGAGAAAGTATGAAGA+AGG | 0.472599 | 4.1:-67899729 | MS.gene48639:CDS |
| TCCTGCTGCGAATACAAAAC+AGG | 0.472860 | 4.1:+67910318 | None:intergenic |
| GCTGGCGTCCTAAAGCTTGT+AGG | 0.481066 | 4.1:+67902438 | None:intergenic |
| CATCTCCAATGCCAGATACA+TGG | 0.481497 | 4.1:+67901627 | None:intergenic |
| TATCTCCATGTATCTGGCAT+TGG | 0.482294 | 4.1:-67901632 | MS.gene48639:CDS |
| AATGTCGCCCAATATGCTTA+TGG | 0.485726 | 4.1:-67902461 | MS.gene48639:CDS |
| TACCGGTGGACTTACTTTCG+TGG | 0.489174 | 4.1:-67910253 | MS.gene48639:CDS |
| AGCAGCCAGCTTCTTCATCA+AGG | 0.489817 | 4.1:+67905588 | None:intergenic |
| GGAAGGAAAACCTGCTCTAT+GGG | 0.493809 | 4.1:-67901672 | MS.gene48639:CDS |
| CCCAGTGAATAAATCTAAGA+TGG | 0.495640 | 4.1:+67904079 | None:intergenic |
| TTTACTTAATTGGAAGTGAT+CGG | 0.498554 | 4.1:-67910410 | MS.gene48639:CDS |
| AACGAGTCCAATGGTTGGTA+TGG | 0.499759 | 4.1:-67899354 | MS.gene48639:CDS |
| AACCGACATTGAGGGATGTC+AGG | 0.499936 | 4.1:-67899676 | MS.gene48639:CDS |
| AACCACCTCGTCAACCAACT+TGG | 0.501393 | 4.1:+67898602 | None:intergenic |
| TCTAGAGCGTCGAGAAATCA+AGG | 0.502908 | 4.1:+67905984 | None:intergenic |
| TTCCAGAGAGGCAGGGAAAG+TGG | 0.504412 | 4.1:-67902160 | MS.gene48639:CDS |
| AAATGTAGACAGTTGAGAAA+AGG | 0.505433 | 4.1:-67904176 | MS.gene48639:intron |
| GAAGAAGCTGGCTGCTGCAA+GGG | 0.507584 | 4.1:-67905581 | MS.gene48639:CDS |
| ACCAAGTTGGTGCTGACCTT+GGG | 0.509470 | 4.1:-67898661 | MS.gene48639:CDS |
| GTGAATTTGCAAATGCTGTT+GGG | 0.509685 | 4.1:-67904131 | MS.gene48639:CDS |
| AGGACGCCAGCTTCATGCAA+TGG | 0.512786 | 4.1:-67902426 | MS.gene48639:CDS |
| AATCTAAGATGGCTCTCTGC+TGG | 0.513164 | 4.1:+67904090 | None:intergenic |
| TCCCAAGGTCAGCACCAACT+TGG | 0.514716 | 4.1:+67898660 | None:intergenic |
| CGTGAATTTGCAAATGCTGT+TGG | 0.518951 | 4.1:-67904132 | MS.gene48639:CDS |
| CATACGATAATATATTTGTC+TGG | 0.519122 | 4.1:-67908237 | MS.gene48639:CDS |
| GACCAAGTTGGTGCTGACCT+TGG | 0.519445 | 4.1:-67898662 | MS.gene48639:CDS |
| CATCTCTGCAAGCTGGTACA+GGG | 0.520292 | 4.1:+67901012 | None:intergenic |
| ATCTCTGCAAGCTGGTACAG+GGG | 0.523665 | 4.1:+67901013 | None:intergenic |
| GGCGAAGAATTTACAAGATG+AGG | 0.525492 | 4.1:+67898631 | None:intergenic |
| TGGTATGGAGGCACCCTCCT+TGG | 0.525713 | 4.1:-67899339 | MS.gene48639:CDS |
| ACAAACCCATTGCATGAAGC+TGG | 0.527122 | 4.1:+67902420 | None:intergenic |
| ACATTATGCTGAGTTATGTC+AGG | 0.527355 | 4.1:-67899286 | MS.gene48639:intron |
| TGGCATCCCTCCTTCTTGAT+CGG | 0.528208 | 4.1:+67908258 | None:intergenic |
| CTAGTTCTGGGGATCTTGCA+AGG | 0.531421 | 4.1:-67902640 | MS.gene48639:CDS |
| CATATTGGGCGACATTTGTA+CGG | 0.533424 | 4.1:+67902468 | None:intergenic |
| ATAACTAAAGAAGAAATCCT+TGG | 0.533615 | 4.1:+67908321 | None:intergenic |
| CCATCTTAGATTTATTCACT+GGG | 0.535225 | 4.1:-67904079 | MS.gene48639:CDS |
| CTCGCTTATCGATCTTTGGG+AGG | 0.535512 | 4.1:-67906020 | MS.gene48639:CDS |
| AGCTGGTGTTGCAGCAGAGA+TGG | 0.541086 | 4.1:-67898705 | MS.gene48639:CDS |
| GCGAACCTGATCAGAAGCCA+GGG | 0.541592 | 4.1:-67900908 | MS.gene48639:CDS |
| AAATTAAGAGTTTGCTTCAG+CGG | 0.542057 | 4.1:-67910296 | MS.gene48639:CDS |
| TTGCTTCAGCGGATCGCTGA+AGG | 0.542309 | 4.1:-67910285 | MS.gene48639:CDS |
| TGGCTTCTGATCAGGTTCGC+AGG | 0.544539 | 4.1:+67900911 | None:intergenic |
| GTTGACGAGGTGGTTAATTG+GGG | 0.547762 | 4.1:-67898594 | MS.gene48639:CDS |
| TTCTAGTGAAACCGACATTG+AGG | 0.549672 | 4.1:-67899685 | MS.gene48639:CDS |
| GCTGCTGCAATACTACTGTC+AGG | 0.549985 | 4.1:+67902377 | None:intergenic |
| TACAGTAATGCTTACACGGA+TGG | 0.552145 | 4.1:-67902089 | MS.gene48639:CDS |
| CGCCTCAGCATCATTTCTCG+AGG | 0.552150 | 4.1:+67904153 | None:intergenic |
| TGAAGAAGCTGGCTGCTGCA+AGG | 0.554250 | 4.1:-67905582 | MS.gene48639:CDS |
| TCTAGTGAAACCGACATTGA+GGG | 0.557031 | 4.1:-67899684 | MS.gene48639:CDS |
| AGACAAATTGGTTCTATATG+TGG | 0.557304 | 4.1:-67908563 | MS.gene48639:CDS |
| AGCAGTCAATGCAGTTGGTA+CGG | 0.557547 | 4.1:+67902495 | None:intergenic |
| GAGAAATCATCTCTGCAAGC+TGG | 0.557758 | 4.1:+67901005 | None:intergenic |
| ATGGATATGTATCAAAGTAT+GGG | 0.559219 | 4.1:-67902350 | MS.gene48639:CDS |
| AGGCTTGGAATCAGTAGTGA+AGG | 0.560779 | 4.1:-67902620 | MS.gene48639:CDS |
| TCTTCGCCGATGATCCAAGT+TGG | 0.562486 | 4.1:-67898616 | MS.gene48639:CDS |
| AAGAGTAATCGAACAAGCAC+AGG | 0.564418 | 4.1:-67903817 | MS.gene48639:CDS |
| GAATCAAGCTCCCATAGAGC+AGG | 0.565993 | 4.1:+67901662 | None:intergenic |
| ATCATCTTGGAAAAGTTCAA+AGG | 0.567326 | 4.1:+67898790 | None:intergenic |
| ATTGTCCTTGATGAAGAAGC+TGG | 0.567639 | 4.1:-67905593 | MS.gene48639:CDS |
| CCAAAAGCTCATCATATCCT+GGG | 0.567744 | 4.1:+67898560 | None:intergenic |
| TCCTAGAACTGCCAAAACAT+TGG | 0.568290 | 4.1:+67903915 | None:intergenic |
| GGTGCCTCCATACCAACCAT+TGG | 0.570905 | 4.1:+67899347 | None:intergenic |
| TTCATCTTGATCACCAAGGA+GGG | 0.571995 | 4.1:+67899326 | None:intergenic |
| CTTAACTCTTCTGGGAGAGA+CGG | 0.573237 | 4.1:-67901047 | MS.gene48639:CDS |
| TCTTGGAAAAGTTCAAAGGC+AGG | 0.575729 | 4.1:+67898794 | None:intergenic |
| GCAAGCCCAACATCGTAAAG+AGG | 0.576027 | 4.1:-67903846 | MS.gene48639:CDS |
| CAGACAAATATATTATCGTA+TGG | 0.579113 | 4.1:+67908238 | None:intergenic |
| CTCACTCTAAAACTGAGCTA+AGG | 0.579574 | 4.1:-67908469 | MS.gene48639:intron |
| GCTGAAGGTAATCGAGCTAC+CGG | 0.582333 | 4.1:-67910270 | MS.gene48639:CDS |
| CCATGCAATTTATAGCATCA+AGG | 0.585778 | 4.1:-67908540 | MS.gene48639:CDS |
| GAGTCCAATGGTTGGTATGG+AGG | 0.588796 | 4.1:-67899351 | MS.gene48639:CDS |
| CCTTGATGCTATAAATTGCA+TGG | 0.589019 | 4.1:+67908540 | None:intergenic |
| TTTGTCTGATGTGCCAAAAG+TGG | 0.589966 | 4.1:-67902402 | MS.gene48639:CDS |
| CGTCAACCAACTTGGATCAT+CGG | 0.590714 | 4.1:+67898610 | None:intergenic |
| GCGAAGAATTTACAAGATGA+GGG | 0.593506 | 4.1:+67898632 | None:intergenic |
| CTTAGGTTACTTCAAACCAC+AGG | 0.594800 | 4.1:-67901693 | MS.gene48639:CDS |
| ATCCAAGTTGGTTGACGAGG+TGG | 0.594865 | 4.1:-67898604 | MS.gene48639:CDS |
| AGCCTGACATCCCTCAATGT+CGG | 0.595969 | 4.1:+67899674 | None:intergenic |
| TCGCTTATCGATCTTTGGGA+GGG | 0.596038 | 4.1:-67906019 | MS.gene48639:CDS |
| GTCTCATCCGATCAAGAAGG+AGG | 0.599326 | 4.1:-67908265 | MS.gene48639:CDS |
| ATCCTTGGTCAAATCAACAC+TGG | 0.602824 | 4.1:+67908336 | None:intergenic |
| TTCATTCATATCATTACCAG+AGG | 0.602926 | 4.1:+67899623 | None:intergenic |
| GTCCAGTGTTGATTTGACCA+AGG | 0.603087 | 4.1:-67908338 | MS.gene48639:CDS |
| GCTCTTGCGCAGCAGTATGG+TGG | 0.604446 | 4.1:-67902323 | MS.gene48639:CDS |
| CTAAAGGAGTATGACCAAGT+TGG | 0.607906 | 4.1:-67898674 | MS.gene48639:CDS |
| GTCCAAGCAGTCAATGCAGT+TGG | 0.608073 | 4.1:+67902490 | None:intergenic |
| CAAGCCCAACATCGTAAAGA+GGG | 0.612195 | 4.1:-67903845 | MS.gene48639:CDS |
| GGGGAGTGAATGATCGAGGG+AGG | 0.612262 | 4.1:-67905643 | MS.gene48639:CDS |
| TGCTTTCATCTTGATCACCA+AGG | 0.612359 | 4.1:+67899322 | None:intergenic |
| ACCATTGGACTCGTTTGCTG+AGG | 0.612462 | 4.1:+67899362 | None:intergenic |
| GAGATATGATCCAACATACC+AGG | 0.619966 | 4.1:-67905358 | MS.gene48639:CDS |
| GGGAGTGAATGATCGAGGGA+GGG | 0.621780 | 4.1:-67905642 | MS.gene48639:CDS |
| AAACGGGGAGTGAATGATCG+AGG | 0.624790 | 4.1:-67905647 | MS.gene48639:CDS |
| TCAGATTGAATTGACACATG+TGG | 0.625059 | 4.1:+67908497 | None:intergenic |
| AACGTCTCATCCGATCAAGA+AGG | 0.628526 | 4.1:-67908268 | MS.gene48639:CDS |
| GAAGGTAATCGAGCTACCGG+TGG | 0.630665 | 4.1:-67910267 | MS.gene48639:CDS |
| AGTTCAGTTGTGCAAATGCG+TGG | 0.631618 | 4.1:-67905551 | MS.gene48639:CDS |
| GGTTACTTCAAACCACAGGA+AGG | 0.633706 | 4.1:-67901689 | MS.gene48639:CDS |
| ACCTCAGCAAACGAGTCCAA+TGG | 0.635950 | 4.1:-67899363 | MS.gene48639:CDS |
| GGCTTGGAATCAGTAGTGAA+GGG | 0.636726 | 4.1:-67902619 | MS.gene48639:CDS |
| GGCCTCGAGAAATGATGCTG+AGG | 0.637737 | 4.1:-67904155 | MS.gene48639:CDS |
| AGAACTCCACTCTGAAAATG+TGG | 0.638512 | 4.1:+67902518 | None:intergenic |
| GCTTCTTGTGACCAGAAAAG+CGG | 0.641494 | 4.1:+67905521 | None:intergenic |
| TCTCATCCGATCAAGAAGGA+GGG | 0.641571 | 4.1:-67908264 | MS.gene48639:CDS |
| AGCCACGAAAGTAAGTCCAC+CGG | 0.651802 | 4.1:+67910251 | None:intergenic |
| ATATTACAGTAATGCTTACA+CGG | 0.651884 | 4.1:-67902093 | MS.gene48639:CDS |
| ATGATCCAAGTTGGTTGACG+AGG | 0.652671 | 4.1:-67898607 | MS.gene48639:CDS |
| GTAATCGAACAAGCACAGGA+AGG | 0.654066 | 4.1:-67903813 | MS.gene48639:intron |
| AACGGGGAGTGAATGATCGA+GGG | 0.655166 | 4.1:-67905646 | MS.gene48639:CDS |
| TTTCATCTTGATCACCAAGG+AGG | 0.656507 | 4.1:+67899325 | None:intergenic |
| AAGATGAGGGAATGATCCCA+AGG | 0.660336 | 4.1:+67898645 | None:intergenic |
| CAGGTGTTTCCAGAGAGGCA+GGG | 0.668351 | 4.1:-67902167 | MS.gene48639:CDS |
| CAGCAAACGAGTCCAATGGT+TGG | 0.672624 | 4.1:-67899359 | MS.gene48639:CDS |
| TGGTAATGATATGAATGAAG+AGG | 0.677063 | 4.1:-67899619 | MS.gene48639:CDS |
| ATTTACAGGTGTTTCCAGAG+AGG | 0.688253 | 4.1:-67902172 | MS.gene48639:intron |
| GATTGCCATATCTCTCAGCA+AGG | 0.690951 | 4.1:+67905313 | None:intergenic |
| CGAACCTGATCAGAAGCCAG+GGG | 0.695888 | 4.1:-67900907 | MS.gene48639:CDS |
| AGATCTGACAGCTAGTTCTG+GGG | 0.715065 | 4.1:-67902651 | MS.gene48639:CDS |
| TGAAAGAGAGCAACACTACG+CGG | 0.721313 | 4.1:-67898765 | MS.gene48639:CDS |
| GAACCTGATCAGAAGCCAGG+GGG | 0.744228 | 4.1:-67900906 | MS.gene48639:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 67898571 | 67910436 | 67898571 | ID=MS.gene48639 |
| chr4.1 | mRNA | 67898571 | 67910436 | 67898571 | ID=MS.gene48639.t1;Parent=MS.gene48639 |
| chr4.1 | exon | 67910232 | 67910436 | 67910232 | ID=MS.gene48639.t1.exon1;Parent=MS.gene48639.t1 |
| chr4.1 | CDS | 67910232 | 67910436 | 67910232 | ID=cds.MS.gene48639.t1;Parent=MS.gene48639.t1 |
| chr4.1 | exon | 67908470 | 67908635 | 67908470 | ID=MS.gene48639.t1.exon2;Parent=MS.gene48639.t1 |
| chr4.1 | CDS | 67908470 | 67908635 | 67908470 | ID=cds.MS.gene48639.t1;Parent=MS.gene48639.t1 |
| chr4.1 | exon | 67908153 | 67908375 | 67908153 | ID=MS.gene48639.t1.exon3;Parent=MS.gene48639.t1 |
| chr4.1 | CDS | 67908153 | 67908375 | 67908153 | ID=cds.MS.gene48639.t1;Parent=MS.gene48639.t1 |
| chr4.1 | exon | 67905967 | 67906043 | 67905967 | ID=MS.gene48639.t1.exon4;Parent=MS.gene48639.t1 |
| chr4.1 | CDS | 67905967 | 67906043 | 67905967 | ID=cds.MS.gene48639.t1;Parent=MS.gene48639.t1 |
| chr4.1 | exon | 67905489 | 67905676 | 67905489 | ID=MS.gene48639.t1.exon5;Parent=MS.gene48639.t1 |
| chr4.1 | CDS | 67905489 | 67905676 | 67905489 | ID=cds.MS.gene48639.t1;Parent=MS.gene48639.t1 |
| chr4.1 | exon | 67905287 | 67905384 | 67905287 | ID=MS.gene48639.t1.exon6;Parent=MS.gene48639.t1 |
| chr4.1 | CDS | 67905287 | 67905384 | 67905287 | ID=cds.MS.gene48639.t1;Parent=MS.gene48639.t1 |
| chr4.1 | exon | 67904057 | 67904190 | 67904057 | ID=MS.gene48639.t1.exon7;Parent=MS.gene48639.t1 |
| chr4.1 | CDS | 67904057 | 67904190 | 67904057 | ID=cds.MS.gene48639.t1;Parent=MS.gene48639.t1 |
| chr4.1 | exon | 67903814 | 67903945 | 67903814 | ID=MS.gene48639.t1.exon8;Parent=MS.gene48639.t1 |
| chr4.1 | CDS | 67903814 | 67903945 | 67903814 | ID=cds.MS.gene48639.t1;Parent=MS.gene48639.t1 |
| chr4.1 | exon | 67902304 | 67902688 | 67902304 | ID=MS.gene48639.t1.exon9;Parent=MS.gene48639.t1 |
| chr4.1 | CDS | 67902304 | 67902688 | 67902304 | ID=cds.MS.gene48639.t1;Parent=MS.gene48639.t1 |
| chr4.1 | exon | 67902065 | 67902186 | 67902065 | ID=MS.gene48639.t1.exon10;Parent=MS.gene48639.t1 |
| chr4.1 | CDS | 67902065 | 67902186 | 67902065 | ID=cds.MS.gene48639.t1;Parent=MS.gene48639.t1 |
| chr4.1 | exon | 67901608 | 67901718 | 67901608 | ID=MS.gene48639.t1.exon11;Parent=MS.gene48639.t1 |
| chr4.1 | CDS | 67901608 | 67901718 | 67901608 | ID=cds.MS.gene48639.t1;Parent=MS.gene48639.t1 |
| chr4.1 | exon | 67900870 | 67901082 | 67900870 | ID=MS.gene48639.t1.exon12;Parent=MS.gene48639.t1 |
| chr4.1 | CDS | 67900870 | 67901082 | 67900870 | ID=cds.MS.gene48639.t1;Parent=MS.gene48639.t1 |
| chr4.1 | exon | 67899606 | 67899785 | 67899606 | ID=MS.gene48639.t1.exon13;Parent=MS.gene48639.t1 |
| chr4.1 | CDS | 67899606 | 67899785 | 67899606 | ID=cds.MS.gene48639.t1;Parent=MS.gene48639.t1 |
| chr4.1 | exon | 67899287 | 67899398 | 67899287 | ID=MS.gene48639.t1.exon14;Parent=MS.gene48639.t1 |
| chr4.1 | CDS | 67899287 | 67899398 | 67899287 | ID=cds.MS.gene48639.t1;Parent=MS.gene48639.t1 |
| chr4.1 | exon | 67898571 | 67898819 | 67898571 | ID=MS.gene48639.t1.exon15;Parent=MS.gene48639.t1 |
| chr4.1 | CDS | 67898571 | 67898819 | 67898571 | ID=cds.MS.gene48639.t1;Parent=MS.gene48639.t1 |
| Gene Sequence |
| Protein sequence |
