AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049368


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049368.t1 MTR_3g094760 90.741 540 19 3 1 509 10 549 0.0 997
MS.gene049368.t1 MTR_3g094760 90.000 390 13 2 146 509 1 390 0.0 716
MS.gene049368.t1 MTR_3g094760 88.889 378 32 3 1 368 10 387 0.0 678
MS.gene049368.t1 MTR_3g094760 89.812 373 29 3 1 365 10 381 0.0 672
MS.gene049368.t1 MTR_7g109250 43.836 73 41 0 433 505 1 73 7.75e-13 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049368.t1 AT5G64930 35.685 482 262 11 37 487 90 554 3.31e-95 300

Find 107 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCAAACCTGCCTTGTTCT+TGG 0.209206 3.1:-75617094 None:intergenic
AATATTATACTTGCCTCTTC+TGG 0.214955 3.1:-75619135 None:intergenic
CCTATCCCGCCACAGGTATT+TGG 0.216056 3.1:+75618409 MS.gene049368:intron
GTTACATTTGGCTCTTATAT+TGG 0.225323 3.1:+75619988 MS.gene049368:CDS
TGTTTCGCTCCACACTCTTC+TGG 0.228023 3.1:+75618754 MS.gene049368:CDS
GGTAATAATGTTGCAGCTAT+TGG 0.237794 3.1:+75617228 MS.gene049368:CDS
TTACAAAGAACTAAACTTAA+AGG 0.241495 3.1:+75617150 MS.gene049368:CDS
AGTATTTGAGAAGTCTATTA+TGG 0.262387 3.1:+75618795 MS.gene049368:CDS
TTACATTTGGCTCTTATATT+GGG 0.305383 3.1:+75619989 MS.gene049368:CDS
CAAATACCTTCGACATAAAA+TGG 0.313208 3.1:-75620223 None:intergenic
TTCCAAGAACAAGGCAGGTT+TGG 0.322158 3.1:+75617092 MS.gene049368:CDS
ATAATAGACTTCTCAAATAC+TGG 0.338799 3.1:-75618793 None:intergenic
TTGCGATGAATTATACGAAT+TGG 0.350702 3.1:-75617127 None:intergenic
AATTGATTGATCTACGATTT+CGG 0.356243 3.1:-75618647 None:intergenic
ATCAATATGATGAAAGTAAC+TGG 0.359996 3.1:-75619906 None:intergenic
GTAATAATGTTGCAGCTATT+GGG 0.361162 3.1:+75617229 MS.gene049368:CDS
TGCTTTACAATTCTAATCCT+TGG 0.374032 3.1:-75620283 None:intergenic
CAATTAGTCGTGAAGAGGTT+GGG 0.380024 3.1:+75618665 MS.gene049368:CDS
ATATTGGGAGATTCTGTGTT+TGG 0.382470 3.1:+75620004 MS.gene049368:CDS
TGATATATCCACAGCTAACT+TGG 0.384633 3.1:-75618932 None:intergenic
TTTGTCTGCAGTGTTGTGAT+TGG 0.387158 3.1:-75620080 None:intergenic
GCAGCTATTGGGTTTCCTCT+TGG 0.395073 3.1:+75617240 MS.gene049368:CDS
TGCATTTCTTATCTATATGC+TGG 0.395276 3.1:+75620027 MS.gene049368:CDS
TGCATAGACTGTCTTATTGC+TGG 0.399086 3.1:+75619027 MS.gene049368:CDS
CCTCTGATAAATTTAGAACT+TGG 0.401901 3.1:-75618562 None:intergenic
AATGTCGGTCGCCGCTGTTA+TGG 0.409104 3.1:+75617263 MS.gene049368:CDS
CGAATCCAATACTGGACAAT+TGG 0.410360 3.1:-75620113 None:intergenic
TACAAAGAACTAAACTTAAA+GGG 0.421502 3.1:+75617151 MS.gene049368:CDS
GGGATCCAATTGTCCAGTAT+TGG 0.427897 3.1:+75620108 MS.gene049368:CDS
GTGGAGCGAAACAAACCATT+TGG 0.429826 3.1:-75618744 None:intergenic
TGGGAGGAAGTGGTTACATT+TGG 0.433556 3.1:+75619976 MS.gene049368:CDS
GAAATTGAAAGAGACAGAAT+TGG 0.434985 3.1:+75618876 MS.gene049368:CDS
TTACACTGGATAGAGATTCT+TGG 0.435874 3.1:-75618257 None:intergenic
CTCACGTGATATTGCTATAG+AGG 0.452113 3.1:+75618591 MS.gene049368:CDS
ACAACACTGCAGACAAAGAA+AGG 0.453746 3.1:+75620086 MS.gene049368:CDS
GAAACCGGCGAATCCAATAC+TGG 0.453805 3.1:-75620121 None:intergenic
GAATCATCGGCTAGCAATGA+AGG 0.454875 3.1:+75618508 MS.gene049368:CDS
TGGGTTTCCTCTTGGAATGT+CGG 0.457541 3.1:+75617248 MS.gene049368:CDS
GTATTTGGAGACAAGCTAGA+TGG 0.458976 3.1:+75618424 MS.gene049368:CDS
ATTACCGACGAAAGATGATC+TGG 0.459956 3.1:-75617843 None:intergenic
GAACGGATTAATGAAGCTGC+TGG 0.464255 3.1:+75619102 MS.gene049368:CDS
TCGATTAATTTATGAATCAT+CGG 0.470997 3.1:+75618495 MS.gene049368:CDS
CAGTTAGAAGATACAAGATA+TGG 0.471609 3.1:+75618988 MS.gene049368:CDS
ATCATATTGATGCTAGGAAT+CGG 0.475169 3.1:+75619918 MS.gene049368:CDS
GTTGTGAGCCGAATGGTGTT+TGG 0.477690 3.1:+75619813 MS.gene049368:CDS
CATTGACCTAAGCTAGCAAA+AGG 0.483365 3.1:-75620194 None:intergenic
TAAATTGAATAATATGAGGT+TGG 0.483853 3.1:+75618534 MS.gene049368:CDS
GGTCGCCGCTGTTATGGCTC+AGG 0.485733 3.1:+75617269 MS.gene049368:CDS
GAGTCTCTGTTCGTCGCACA+AGG 0.486445 3.1:+75617205 MS.gene049368:CDS
GCTTTGTACGCAATCCTTCA+CGG 0.486882 3.1:+75620056 MS.gene049368:CDS
GCGTGGGCAATCAAACCAAA+TGG 0.492192 3.1:+75618729 MS.gene049368:CDS
TTAAGAAACCAAACACCATT+CGG 0.492840 3.1:-75619821 None:intergenic
GACCTCAAGACTGTTGAACT+TGG 0.503042 3.1:+75618835 MS.gene049368:CDS
CAACACTGCAGACAAAGAAA+GGG 0.508358 3.1:+75620087 MS.gene049368:CDS
CTTATGTTTATAACTTTGAA+CGG 0.519189 3.1:+75619085 MS.gene049368:CDS
ACTTTCATCATATTGATGCT+AGG 0.523684 3.1:+75619912 MS.gene049368:CDS
GGAATAAATTGAATAATATG+AGG 0.525115 3.1:+75618530 MS.gene049368:CDS
GTGCGACGAACAGAGACTCT+AGG 0.528010 3.1:-75617201 None:intergenic
AAATAGCATAGAAAAGAAAC+CGG 0.529156 3.1:-75620136 None:intergenic
GGAATCGGCTGTGGCTATTG+TGG 0.531204 3.1:+75619933 MS.gene049368:CDS
ACTCGTGATATTGCTTTGCG+TGG 0.534604 3.1:+75618712 MS.gene049368:CDS
TTGCGTATCTGCTCTTCCAA+CGG 0.536508 3.1:+75619856 MS.gene049368:CDS
TTGTCCAGTATTGGATTCGC+CGG 0.540204 3.1:+75620117 MS.gene049368:CDS
TCAATTAGTCGTGAAGAGGT+TGG 0.540617 3.1:+75618664 MS.gene049368:CDS
ACTTGTTCCAAGAACAAGGC+AGG 0.547264 3.1:+75617087 MS.gene049368:CDS
AATTAGTCGTGAAGAGGTTG+GGG 0.548529 3.1:+75618666 MS.gene049368:CDS
CCAAGTTCTAAATTTATCAG+AGG 0.549470 3.1:+75618562 MS.gene049368:CDS
ATAGACACACTGGGAGGAAG+TGG 0.551696 3.1:+75619966 MS.gene049368:CDS
AAGAACTAAACTTAAAGGGA+AGG 0.560116 3.1:+75617155 MS.gene049368:CDS
TGTGCGTGTGATAGTAGCCC+TGG 0.564868 3.1:-75618622 None:intergenic
CGACACTTGTTCCAAGAACA+AGG 0.568523 3.1:+75617083 MS.gene049368:CDS
CCGTCGACATAACTGATCCT+TGG 0.569295 3.1:-75620250 None:intergenic
GCTATAGAGGATGATCAACC+AGG 0.569754 3.1:+75618604 MS.gene049368:CDS
TGCGACGAACAGAGACTCTA+GGG 0.572180 3.1:-75617200 None:intergenic
CTCGTGATATTGCTTTGCGT+GGG 0.580028 3.1:+75618713 MS.gene049368:CDS
AACCATGTGTATAGACACAC+TGG 0.581583 3.1:+75619956 MS.gene049368:CDS
GTGGTTCTACCATTGTGTTG+TGG 0.589142 3.1:+75620164 MS.gene049368:CDS
TCCCAGTGTGTCTATACACA+TGG 0.593565 3.1:-75619958 None:intergenic
TCAATCAATTAGTCGTGAAG+AGG 0.596638 3.1:+75618660 MS.gene049368:CDS
ATGACAATGTTGCTGACCGT+TGG 0.600468 3.1:-75619872 None:intergenic
GACCAAGTTCAACAGTCTTG+AGG 0.602623 3.1:-75618837 None:intergenic
GTCTCTGTTCGTCGCACAAG+GGG 0.614024 3.1:+75617207 MS.gene049368:CDS
GTCTCCAGATCATCTTTCGT+CGG 0.614069 3.1:+75617839 MS.gene049368:CDS
AGAACTAAACTTAAAGGGAA+GGG 0.614995 3.1:+75617156 MS.gene049368:CDS
AATCATCGGCTAGCAATGAA+GGG 0.615080 3.1:+75618509 MS.gene049368:CDS
TTGATGCTAGGAATCGGCTG+TGG 0.621482 3.1:+75619924 MS.gene049368:CDS
TGGATCATGTACTCCAGAAG+AGG 0.626196 3.1:+75619122 MS.gene049368:CDS
GTGTTGTGATTGGTCCGTGA+AGG 0.630791 3.1:-75620070 None:intergenic
CAGTCTTGAGGTCATTAGAA+CGG 0.632207 3.1:-75618825 None:intergenic
GCTAAAGCTCCAGAAGAGTG+TGG 0.634639 3.1:-75618763 None:intergenic
CACGAGTAACTGACTCCATG+TGG 0.635878 3.1:-75618696 None:intergenic
GCAGAGATCCAAGTTAGCTG+TGG 0.637768 3.1:+75618924 MS.gene049368:CDS
AGTCTCTGTTCGTCGCACAA+GGG 0.643071 3.1:+75617206 MS.gene049368:CDS
TCGACGGTGTTTGATGACCA+AGG 0.644991 3.1:+75620266 MS.gene049368:CDS
AACACTGCAGACAAAGAAAG+GGG 0.647953 3.1:+75620088 MS.gene049368:CDS
CCAAGGATCAGTTATGTCGA+CGG 0.660123 3.1:+75620250 MS.gene049368:CDS
AGTTCGAGTTGTGAGCCGAA+TGG 0.664589 3.1:+75619806 MS.gene049368:intron
TCGAAGGTATTTGATGACCA+AGG 0.667029 3.1:+75620233 MS.gene049368:CDS
CTATAGAGGATGATCAACCA+GGG 0.671615 3.1:+75618605 MS.gene049368:CDS
GTGAAGGATTGCGTACAAAG+CGG 0.678570 3.1:-75620054 None:intergenic
GGTTGGGGATAACTTCCACA+TGG 0.679592 3.1:+75618681 MS.gene049368:CDS
GGCAGAAGACCACAACACAA+TGG 0.680312 3.1:-75620173 None:intergenic
ACCATGTGTATAGACACACT+GGG 0.709070 3.1:+75619957 MS.gene049368:CDS
GCGGCGACCGACATTCCAAG+AGG 0.714229 3.1:-75617255 None:intergenic
ACAAGCTAGATGGTTTGACA+AGG 0.723594 3.1:+75618434 MS.gene049368:CDS
ATGTGTATAGACACACTGGG+AGG 0.773147 3.1:+75619960 MS.gene049368:CDS
GTTTACCTGAGCCATAACAG+CGG 0.843584 3.1:-75617274 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAAATGGTTATAATAT+AGG - chr3.1:75619416-75619435 None:intergenic 10.0%
!!! ACTAAGTTTTTTTTTTTAAT+TGG + chr3.1:75617730-75617749 MS.gene049368:intron 10.0%
!!! TTTAAAAATTAAAGCTTTAA+CGG - chr3.1:75617304-75617323 None:intergenic 10.0%
!! AAAAAATGAAAAACTAAACA+AGG - chr3.1:75619554-75619573 None:intergenic 15.0%
!! AAAACCGTTATAAAAAAATT+TGG + chr3.1:75618171-75618190 MS.gene049368:intron 15.0%
!! AAACCGTTATAAAAAAATTT+GGG + chr3.1:75618172-75618191 MS.gene049368:intron 15.0%
!! GAAATAATATTTCAATGATA+TGG - chr3.1:75619303-75619322 None:intergenic 15.0%
!!! AAACCCAAATTTTTTTATAA+CGG - chr3.1:75618178-75618197 None:intergenic 15.0%
!!! GCTAATTATTCTTTAAAAAA+TGG - chr3.1:75619428-75619447 None:intergenic 15.0%
!!! TTTTTTTTTTTAATTGGTAC+AGG + chr3.1:75617736-75617755 MS.gene049368:intron 15.0%
!! AAGATGAAAATAACTAATAG+GGG + chr3.1:75619218-75619237 MS.gene049368:intron 20.0%
!! ATTTCGTTAAAACTAAAACT+TGG - chr3.1:75617895-75617914 None:intergenic 20.0%
!! CAAGATGAAAATAACTAATA+GGG + chr3.1:75619217-75619236 MS.gene049368:intron 20.0%
!! CTTATGTTTATAACTTTGAA+CGG + chr3.1:75619085-75619104 MS.gene049368:CDS 20.0%
!! GGAATAAATTGAATAATATG+AGG + chr3.1:75618530-75618549 MS.gene049368:CDS 20.0%
!! TAAATTGAATAATATGAGGT+TGG + chr3.1:75618534-75618553 MS.gene049368:CDS 20.0%
!! TACAAAGAACTAAACTTAAA+GGG + chr3.1:75617151-75617170 MS.gene049368:CDS 20.0%
!! TCGATTAATTTATGAATCAT+CGG + chr3.1:75618495-75618514 MS.gene049368:CDS 20.0%
!! TGGGTTAAAACTTAAAAATA+AGG - chr3.1:75617875-75617894 None:intergenic 20.0%
!! TGTTAAAACAATGATGTTTA+GGG + chr3.1:75618109-75618128 MS.gene049368:intron 20.0%
!! TTACAAAGAACTAAACTTAA+AGG + chr3.1:75617150-75617169 MS.gene049368:CDS 20.0%
!! TTGTTAAAACAATGATGTTT+AGG + chr3.1:75618108-75618127 MS.gene049368:intron 20.0%
!! TTTCGTTAAAACTAAAACTT+GGG - chr3.1:75617894-75617913 None:intergenic 20.0%
!! TTTCTGATTATTACTGTATT+GGG + chr3.1:75617333-75617352 MS.gene049368:intron 20.0%
!!! AAGCTTTTGTTTTTGTTTTT+AGG + chr3.1:75617782-75617801 MS.gene049368:intron 20.0%
!!! ACAATTTATTTTGAGAAAGT+GGG - chr3.1:75619508-75619527 None:intergenic 20.0%
!!! TACAATTTATTTTGAGAAAG+TGG - chr3.1:75619509-75619528 None:intergenic 20.0%
!!! TCTAAAGTCAAACATATTAT+TGG + chr3.1:75618050-75618069 MS.gene049368:intron 20.0%
! AAATAGCATAGAAAAGAAAC+CGG - chr3.1:75620139-75620158 None:intergenic 25.0%
! AACGATGTAAAATGTTTACA+TGG - chr3.1:75617974-75617993 None:intergenic 25.0%
! AATTGATTGATCTACGATTT+CGG - chr3.1:75618650-75618669 None:intergenic 25.0%
! AGGTGCATATTATGTAAAAT+AGG + chr3.1:75619637-75619656 MS.gene049368:intron 25.0%
! AGTATTTGAGAAGTCTATTA+TGG + chr3.1:75618795-75618814 MS.gene049368:CDS 25.0%
! ATAATAGACTTCTCAAATAC+TGG - chr3.1:75618796-75618815 None:intergenic 25.0%
! ATATTTGAAAGATCACTGAT+AGG + chr3.1:75619275-75619294 MS.gene049368:intron 25.0%
! ATCAATATGATGAAAGTAAC+TGG - chr3.1:75619909-75619928 None:intergenic 25.0%
! ATGAATTAACAATTGATGTC+TGG - chr3.1:75618284-75618303 None:intergenic 25.0%
! ATGTAGTAAAATCACAATCA+AGG - chr3.1:75618308-75618327 None:intergenic 25.0%
! CATAGAATAAAATTGGAACA+GGG - chr3.1:75619169-75619188 None:intergenic 25.0%
! CTTTCTGATTATTACTGTAT+TGG + chr3.1:75617332-75617351 MS.gene049368:intron 25.0%
! GCAAGATGAAAATAACTAAT+AGG + chr3.1:75619216-75619235 MS.gene049368:intron 25.0%
! GCAATCTAATTTAAGAACTA+AGG + chr3.1:75619617-75619636 MS.gene049368:intron 25.0%
! TATTTGAAAGATCACTGATA+GGG + chr3.1:75619276-75619295 MS.gene049368:intron 25.0%
! TGCATATTATGTAAAATAGG+AGG + chr3.1:75619640-75619659 MS.gene049368:intron 25.0%
! TGTAGTAAAATCACAATCAA+GGG - chr3.1:75618307-75618326 None:intergenic 25.0%
!! ATTTTTGTAACACATCACAT+CGG - chr3.1:75617419-75617438 None:intergenic 25.0%
!! CAAGTTAGAATCAATTTTAG+AGG + chr3.1:75617589-75617608 MS.gene049368:intron 25.0%
!! CATTAAAGCAGCAATTTTTA+AGG - chr3.1:75617371-75617390 None:intergenic 25.0%
!! TGAAACTACAATCATAGTTT+TGG - chr3.1:75617564-75617583 None:intergenic 25.0%
!! TTTTGAATCATCTAACGATT+TGG - chr3.1:75618005-75618024 None:intergenic 25.0%
!!! AACGGTGTTTTTTCTATTTT+AGG + chr3.1:75619713-75619732 MS.gene049368:intron 25.0%
!!! ATCTATTGTTTTAGTGTGTT+TGG - chr3.1:75617707-75617726 None:intergenic 25.0%
!!! GACAATATGATGGATTTTAT+TGG - chr3.1:75619385-75619404 None:intergenic 25.0%
!!! GTATTTATTGATTCTGTTCA+TGG + chr3.1:75617758-75617777 MS.gene049368:intron 25.0%
!!! TTACATTTGGCTCTTATATT+GGG + chr3.1:75619989-75620008 MS.gene049368:CDS 25.0%
AAGAACTAAACTTAAAGGGA+AGG + chr3.1:75617155-75617174 MS.gene049368:CDS 30.0%
AATATTATACTTGCCTCTTC+TGG - chr3.1:75619138-75619157 None:intergenic 30.0%
AATATTCCCAAATTGAGCAA+AGG - chr3.1:75619693-75619712 None:intergenic 30.0%
ACTTTCATCATATTGATGCT+AGG + chr3.1:75619912-75619931 MS.gene049368:CDS 30.0%
AGAACTAAACTTAAAGGGAA+GGG + chr3.1:75617156-75617175 MS.gene049368:CDS 30.0%
ATAAGCACCATAAAAAAGTG+AGG - chr3.1:75619070-75619089 None:intergenic 30.0%
ATCATATTGATGCTAGGAAT+CGG + chr3.1:75619918-75619937 MS.gene049368:CDS 30.0%
ATTTGAAAGATCACTGATAG+GGG + chr3.1:75619277-75619296 MS.gene049368:intron 30.0%
CAAATACCTTCGACATAAAA+TGG - chr3.1:75620226-75620245 None:intergenic 30.0%
CAGTTAGAAGATACAAGATA+TGG + chr3.1:75618988-75619007 MS.gene049368:CDS 30.0%
CCTGAAGCATAGAATAAAAT+TGG - chr3.1:75619176-75619195 None:intergenic 30.0%
GAAATTGAAAGAGACAGAAT+TGG + chr3.1:75618876-75618895 MS.gene049368:CDS 30.0%
GCATAGAATAAAATTGGAAC+AGG - chr3.1:75619170-75619189 None:intergenic 30.0%
GCTCAATTTGGGAATATTAA+CGG + chr3.1:75619695-75619714 MS.gene049368:intron 30.0%
GTAATAATGTTGCAGCTATT+GGG + chr3.1:75617229-75617248 MS.gene049368:CDS 30.0%
TACTTCCAGACACATAAAAT+TGG - chr3.1:75617662-75617681 None:intergenic 30.0%
TGCATTTCTTATCTATATGC+TGG + chr3.1:75620027-75620046 MS.gene049368:CDS 30.0%
TTAAGAAACCAAACACCATT+CGG - chr3.1:75619824-75619843 None:intergenic 30.0%
TTGCGATGAATTATACGAAT+TGG - chr3.1:75617130-75617149 None:intergenic 30.0%
! ATTCAACTAGCTCTTAACTA+AGG - chr3.1:75617460-75617479 None:intergenic 30.0%
! CAAAACCAATTTTATGTGTC+TGG + chr3.1:75617654-75617673 MS.gene049368:intron 30.0%
! CCAATTTTATTCTATGCTTC+AGG + chr3.1:75619173-75619192 MS.gene049368:intron 30.0%
! CCTCTGATAAATTTAGAACT+TGG - chr3.1:75618565-75618584 None:intergenic 30.0%
! GTCAAACATATTATTGGTTG+TGG + chr3.1:75618056-75618075 MS.gene049368:intron 30.0%
!! CCAAGTTCTAAATTTATCAG+AGG + chr3.1:75618562-75618581 MS.gene049368:CDS 30.0%
!! GTTACATTTGGCTCTTATAT+TGG + chr3.1:75619988-75620007 MS.gene049368:CDS 30.0%
!!! ATGTCATCCTCACTTTTTTA+TGG + chr3.1:75619060-75619079 MS.gene049368:CDS 30.0%
!!! TTGTTTTAGTGTGTTTGGTT+TGG - chr3.1:75617702-75617721 None:intergenic 30.0%
!!! TTTCTATGCTATTTTGCTTG+TGG + chr3.1:75620145-75620164 MS.gene049368:CDS 30.0%
AAATGTTTACATGGACAGTG+TGG - chr3.1:75617965-75617984 None:intergenic 35.0%
AGCATTTCCTTTGCTCAATT+TGG + chr3.1:75619683-75619702 MS.gene049368:intron 35.0%
ATATTGGGAGATTCTGTGTT+TGG + chr3.1:75620004-75620023 MS.gene049368:CDS 35.0%
ATGCACACTTGAATTTAACC+AGG - chr3.1:75619772-75619791 None:intergenic 35.0%
GCATTTCCTTTGCTCAATTT+GGG + chr3.1:75619684-75619703 MS.gene049368:intron 35.0%
GGCTTTACATGACAATATGA+TGG - chr3.1:75619395-75619414 None:intergenic 35.0%
GGTAATAATGTTGCAGCTAT+TGG + chr3.1:75617228-75617247 MS.gene049368:CDS 35.0%
TCAATCAATTAGTCGTGAAG+AGG + chr3.1:75618660-75618679 MS.gene049368:CDS 35.0%
TGATATATCCACAGCTAACT+TGG - chr3.1:75618935-75618954 None:intergenic 35.0%
TTACACTGGATAGAGATTCT+TGG - chr3.1:75618260-75618279 None:intergenic 35.0%
! GAAAGACCATTTTATGTCGA+AGG + chr3.1:75620217-75620236 MS.gene049368:CDS 35.0%
!! TATTTTAGGAACCTTCCTAC+TGG + chr3.1:75619727-75619746 MS.gene049368:intron 35.0%
!! TTATGTGTCTGGAAGTACTT+TGG + chr3.1:75617665-75617684 MS.gene049368:intron 35.0%
AAATCAAAACAAGCGTCACG+CGG - chr3.1:75618386-75618405 None:intergenic 40.0%
AACACTGCAGACAAAGAAAG+GGG + chr3.1:75620088-75620107 MS.gene049368:CDS 40.0%
AACCATGTGTATAGACACAC+TGG + chr3.1:75619956-75619975 MS.gene049368:CDS 40.0%
AATTAGTCGTGAAGAGGTTG+GGG + chr3.1:75618666-75618685 MS.gene049368:CDS 40.0%
ACAACACTGCAGACAAAGAA+AGG + chr3.1:75620086-75620105 MS.gene049368:CDS 40.0%
ACAAGCTAGATGGTTTGACA+AGG + chr3.1:75618434-75618453 MS.gene049368:CDS 40.0%
ACATCGACAAGAAATCTGTC+AGG - chr3.1:75618334-75618353 None:intergenic 40.0%
ACCATGTGTATAGACACACT+GGG + chr3.1:75619957-75619976 MS.gene049368:CDS 40.0%
ATTACCGACGAAAGATGATC+TGG - chr3.1:75617846-75617865 None:intergenic 40.0%
CAACACTGCAGACAAAGAAA+GGG + chr3.1:75620087-75620106 MS.gene049368:CDS 40.0%
CAATTAGTCGTGAAGAGGTT+GGG + chr3.1:75618665-75618684 MS.gene049368:CDS 40.0%
CAGTCTTGAGGTCATTAGAA+CGG - chr3.1:75618828-75618847 None:intergenic 40.0%
CATCGACAAGAAATCTGTCA+GGG - chr3.1:75618333-75618352 None:intergenic 40.0%
CATTGACCTAAGCTAGCAAA+AGG - chr3.1:75620197-75620216 None:intergenic 40.0%
CGAATCCAATACTGGACAAT+TGG - chr3.1:75620116-75620135 None:intergenic 40.0%
CTATAGAGGATGATCAACCA+GGG + chr3.1:75618605-75618624 MS.gene049368:CDS 40.0%
CTCACGTGATATTGCTATAG+AGG + chr3.1:75618591-75618610 MS.gene049368:CDS 40.0%
GTATTTGGAGACAAGCTAGA+TGG + chr3.1:75618424-75618443 MS.gene049368:CDS 40.0%
TCAATTAGTCGTGAAGAGGT+TGG + chr3.1:75618664-75618683 MS.gene049368:CDS 40.0%
TTTGTCTGCAGTGTTGTGAT+TGG - chr3.1:75620083-75620102 None:intergenic 40.0%
! AATCATCGGCTAGCAATGAA+GGG + chr3.1:75618509-75618528 MS.gene049368:CDS 40.0%
! AATTGATGTCTGGCTTACAC+TGG - chr3.1:75618274-75618293 None:intergenic 40.0%
! GCGATATTAGTTTACACCGA+CGG + chr3.1:75619475-75619494 MS.gene049368:intron 40.0%
! TGCATAGACTGTCTTATTGC+TGG + chr3.1:75619027-75619046 MS.gene049368:CDS 40.0%
!! CTTTTGCTAGCTTAGGTCAA+TGG + chr3.1:75620195-75620214 MS.gene049368:CDS 40.0%
!! TCGAAGGTATTTGATGACCA+AGG + chr3.1:75620233-75620252 MS.gene049368:CDS 40.0%
!! TTTAACCAGGTCACTGACTT+TGG - chr3.1:75619759-75619778 None:intergenic 40.0%
AAGGCAGACAAACAGTGGAA+CGG - chr3.1:75618216-75618235 None:intergenic 45.0%
ACTCGTGATATTGCTTTGCG+TGG + chr3.1:75618712-75618731 MS.gene049368:CDS 45.0%
ACTTGTTCCAAGAACAAGGC+AGG + chr3.1:75617087-75617106 MS.gene049368:CDS 45.0%
AGCTTGTCTCCAAATACCTG+TGG - chr3.1:75618421-75618440 None:intergenic 45.0%
ATGACAATGTTGCTGACCGT+TGG - chr3.1:75619875-75619894 None:intergenic 45.0%
ATGTGTATAGACACACTGGG+AGG + chr3.1:75619960-75619979 MS.gene049368:CDS 45.0%
CCAAGGATCAGTTATGTCGA+CGG + chr3.1:75620250-75620269 MS.gene049368:CDS 45.0%
CGACACTTGTTCCAAGAACA+AGG + chr3.1:75617083-75617102 MS.gene049368:CDS 45.0%
CTCGTGATATTGCTTTGCGT+GGG + chr3.1:75618713-75618732 MS.gene049368:CDS 45.0%
GACCAAGTTCAACAGTCTTG+AGG - chr3.1:75618840-75618859 None:intergenic 45.0%
GACCTCAAGACTGTTGAACT+TGG + chr3.1:75618835-75618854 MS.gene049368:CDS 45.0%
GCTATAGAGGATGATCAACC+AGG + chr3.1:75618604-75618623 MS.gene049368:CDS 45.0%
GCTGTTATGGCTCAGGTAAA+CGG + chr3.1:75617276-75617295 MS.gene049368:intron 45.0%
GCTTTGTACGCAATCCTTCA+CGG + chr3.1:75620056-75620075 MS.gene049368:CDS 45.0%
GGGATCCAATTGTCCAGTAT+TGG + chr3.1:75620108-75620127 MS.gene049368:CDS 45.0%
GTCTCCAGATCATCTTTCGT+CGG + chr3.1:75617839-75617858 MS.gene049368:CDS 45.0%
GTGAAGGATTGCGTACAAAG+CGG - chr3.1:75620057-75620076 None:intergenic 45.0%
GTGGAGCGAAACAAACCATT+TGG - chr3.1:75618747-75618766 None:intergenic 45.0%
GTTTACCTGAGCCATAACAG+CGG - chr3.1:75617277-75617296 None:intergenic 45.0%
TCCCAGTGTGTCTATACACA+TGG - chr3.1:75619961-75619980 None:intergenic 45.0%
TCTACAAGGCAGACAAACAG+TGG - chr3.1:75618221-75618240 None:intergenic 45.0%
TGGATCATGTACTCCAGAAG+AGG + chr3.1:75619122-75619141 MS.gene049368:CDS 45.0%
TGGGAGGAAGTGGTTACATT+TGG + chr3.1:75619976-75619995 MS.gene049368:CDS 45.0%
TGGGTTTCCTCTTGGAATGT+CGG + chr3.1:75617248-75617267 MS.gene049368:CDS 45.0%
TTCCAAGAACAAGGCAGGTT+TGG + chr3.1:75617092-75617111 MS.gene049368:CDS 45.0%
TTGCGTATCTGCTCTTCCAA+CGG + chr3.1:75619856-75619875 MS.gene049368:CDS 45.0%
TTGTCTCCAAATACCTGTGG+CGG - chr3.1:75618418-75618437 None:intergenic 45.0%
TTTAGGAACCTTCCTACTGG+TGG + chr3.1:75619730-75619749 MS.gene049368:intron 45.0%
! GAATCATCGGCTAGCAATGA+AGG + chr3.1:75618508-75618527 MS.gene049368:CDS 45.0%
! GTGGTTCTACCATTGTGTTG+TGG + chr3.1:75620164-75620183 MS.gene049368:CDS 45.0%
! TTCCAAACCTGCCTTGTTCT+TGG - chr3.1:75617097-75617116 None:intergenic 45.0%
! TTGTCCAGTATTGGATTCGC+CGG + chr3.1:75620117-75620136 MS.gene049368:CDS 45.0%
!! CTTCTGCCTTTTGCTAGCTT+AGG + chr3.1:75620188-75620207 MS.gene049368:CDS 45.0%
!! GAACGGATTAATGAAGCTGC+TGG + chr3.1:75619102-75619121 MS.gene049368:CDS 45.0%
AGTCTCTGTTCGTCGCACAA+GGG + chr3.1:75617206-75617225 MS.gene049368:CDS 50.0%
ATAGACACACTGGGAGGAAG+TGG + chr3.1:75619966-75619985 MS.gene049368:CDS 50.0%
CCGTCGACATAACTGATCCT+TGG - chr3.1:75620253-75620272 None:intergenic 50.0%
CGCAGATGTGCACATCTACA+AGG - chr3.1:75618235-75618254 None:intergenic 50.0%
GAAACCGGCGAATCCAATAC+TGG - chr3.1:75620124-75620143 None:intergenic 50.0%
GCAGAGATCCAAGTTAGCTG+TGG + chr3.1:75618924-75618943 MS.gene049368:CDS 50.0%
GCAGCTATTGGGTTTCCTCT+TGG + chr3.1:75617240-75617259 MS.gene049368:CDS 50.0%
GCGTGGGCAATCAAACCAAA+TGG + chr3.1:75618729-75618748 MS.gene049368:CDS 50.0%
GCTAAAGCTCCAGAAGAGTG+TGG - chr3.1:75618766-75618785 None:intergenic 50.0%
GGCAGAAGACCACAACACAA+TGG - chr3.1:75620176-75620195 None:intergenic 50.0%
GGTTGGGGATAACTTCCACA+TGG + chr3.1:75618681-75618700 MS.gene049368:CDS 50.0%
GTTGTGAGCCGAATGGTGTT+TGG + chr3.1:75619813-75619832 MS.gene049368:CDS 50.0%
TGCGACGAACAGAGACTCTA+GGG - chr3.1:75617203-75617222 None:intergenic 50.0%
TGTCTCCAAATACCTGTGGC+GGG - chr3.1:75618417-75618436 None:intergenic 50.0%
TGTTTCGCTCCACACTCTTC+TGG + chr3.1:75618754-75618773 MS.gene049368:CDS 50.0%
TTGATGCTAGGAATCGGCTG+TGG + chr3.1:75619924-75619943 MS.gene049368:CDS 50.0%
! CACGAGTAACTGACTCCATG+TGG - chr3.1:75618699-75618718 None:intergenic 50.0%
! GTGTTGTGATTGGTCCGTGA+AGG - chr3.1:75620073-75620092 None:intergenic 50.0%
! TCGACGGTGTTTGATGACCA+AGG + chr3.1:75620266-75620285 MS.gene049368:CDS 50.0%
! TTTGGAGTCCACCAGTAGGA+AGG - chr3.1:75619741-75619760 None:intergenic 50.0%
!! AGTTCGAGTTGTGAGCCGAA+TGG + chr3.1:75619806-75619825 MS.gene049368:intron 50.0%
!! TGACTTTGGAGTCCACCAGT+AGG - chr3.1:75619745-75619764 None:intergenic 50.0%
AATGTCGGTCGCCGCTGTTA+TGG + chr3.1:75617263-75617282 MS.gene049368:CDS 55.0%
ATTTCTGCCTATCCCGCCAC+AGG + chr3.1:75618402-75618421 MS.gene049368:intron 55.0%
CACGCGGACATCACTTCAAC+AGG - chr3.1:75618370-75618389 None:intergenic 55.0%
CCTATCCCGCCACAGGTATT+TGG + chr3.1:75618409-75618428 MS.gene049368:intron 55.0%
GAAAGTGGGACATGCACCGT+CGG - chr3.1:75619494-75619513 None:intergenic 55.0%
GAGTCTCTGTTCGTCGCACA+AGG + chr3.1:75617205-75617224 MS.gene049368:CDS 55.0%
GGAATCGGCTGTGGCTATTG+TGG + chr3.1:75619933-75619952 MS.gene049368:CDS 55.0%
GGACTCCAAAGTCAGTGACC+TGG + chr3.1:75619751-75619770 MS.gene049368:intron 55.0%
GTCTCTGTTCGTCGCACAAG+GGG + chr3.1:75617207-75617226 MS.gene049368:CDS 55.0%
GTGCGACGAACAGAGACTCT+AGG - chr3.1:75617204-75617223 None:intergenic 55.0%
TGTGCGTGTGATAGTAGCCC+TGG - chr3.1:75618625-75618644 None:intergenic 55.0%
! CCAAATACCTGTGGCGGGAT+AGG - chr3.1:75618412-75618431 None:intergenic 55.0%
GCGGCGACCGACATTCCAAG+AGG - chr3.1:75617258-75617277 None:intergenic 65.0%
GGTCGCCGCTGTTATGGCTC+AGG + chr3.1:75617269-75617288 MS.gene049368:CDS 65.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 75617072 75620301 75617072 ID=MS.gene049368
chr3.1 mRNA 75617072 75620301 75617072 ID=MS.gene049368.t1;Parent=MS.gene049368
chr3.1 exon 75617072 75617290 75617072 ID=MS.gene049368.t1.exon1;Parent=MS.gene049368.t1
chr3.1 CDS 75617072 75617290 75617072 ID=cds.MS.gene049368.t1;Parent=MS.gene049368.t1
chr3.1 exon 75617804 75617860 75617804 ID=MS.gene049368.t1.exon2;Parent=MS.gene049368.t1
chr3.1 CDS 75617804 75617860 75617804 ID=cds.MS.gene049368.t1;Parent=MS.gene049368.t1
chr3.1 exon 75618240 75618275 75618240 ID=MS.gene049368.t1.exon3;Parent=MS.gene049368.t1
chr3.1 CDS 75618240 75618275 75618240 ID=cds.MS.gene049368.t1;Parent=MS.gene049368.t1
chr3.1 exon 75618424 75619147 75618424 ID=MS.gene049368.t1.exon4;Parent=MS.gene049368.t1
chr3.1 CDS 75618424 75619147 75618424 ID=cds.MS.gene049368.t1;Parent=MS.gene049368.t1
chr3.1 exon 75619808 75620301 75619808 ID=MS.gene049368.t1.exon5;Parent=MS.gene049368.t1
chr3.1 CDS 75619808 75620301 75619808 ID=cds.MS.gene049368.t1;Parent=MS.gene049368.t1
Gene Sequence

>MS.gene049368

ATGGCTGAGATCGACACTTGTTCCAAGAACAAGGCAGGTTTGGAAATTTGCGAAACCAATTCGTATAATTCATCGCAATTACAAAGAACTAAACTTAAAGGGAAGGGAATTGCGTGCAAACGACGAAACCCTAGAGTCTCTGTTCGTCGCACAAGGGGTAATAATGTTGCAGCTATTGGGTTTCCTCTTGGAATGTCGGTCGCCGCTGTTATGGCTCAGGTAAACGGTACCGTTAAAGCTTTAATTTTTAAAGTTTATTGCTTTCTGATTATTACTGTATTGGGTGATGTTTGAAACCTTAAAAATTGCTGCTTTAATGAAATTTGTTATGTTTTCTGTATATACCGATGTGATGTGTTACAAAAATTGATTTTGAATGAATTGACCTTAGTTAAGAGCTAGTTGAATGCGAAGTTGTTTATGTTTGTATACAATTATACAAAAGCAAGTCAAACAATAAATTTGAGTGTAAAAATCATGTTTTTGAGTCCAAAACTATGATTGTAGTTTCAAGCTTCAAGTTAGAATCAATTTTAGAGGCAAAATCAATTTCAATTGACATTATGTAGACAAGTCAAAACTCAAAACCAATTTTATGTGTCTGGAAGTACTTTGGATCTTCAATTGCCAAACCAAACACACTAAAACAATAGATTCTACTAAGTTTTTTTTTTTAATTGGTACAGGTATTTATTGATTCTGTTCATGGAAAGCTTTTGTTTTTGTTTTTAGGTGTTGTACAGAAGAGATGCAGCAGCTGAGAGTGTGTCTCCAGATCATCTTTCGTCGGTAATTTTCTTCCTTATTTTTAAGTTTTAACCCAAGTTTTAGTTTTAACGAAATTTGTTTTCGACTTATGCACATTTGTTGTTACAATGAATTTAATTCGTCCACACTGTCCATGTAAACATTTTACATCGTTAATCAAATCCAAATCGTTAGATGATTCAAAACGTTTGATCTTGAATCATAATTACTTCTAAAGTCAAACATATTATTGGTTGTGGTTTGTTAACAGTGTATCAAAATCAAACTCTTGTTAAAACAATGATGTTTAGGGAAAGTACAACAGTAGTCTATTATTGATTACTGATAACACAAAACCGTTATAAAAAAATTTGGGTTTTGATTTGAGTCTTGACCGTTCCACTGTTTGTCTGCCTTGTAGATGTGCACATCTGCGATCCAAGAATCTCTATCCAGTGTAAGCCAGACATCAATTGTTAATTCATCCCTTGATTGTGATTTTACTACATTTCCCTGACAGATTTCTTGTCGATGTAAGCAAAGTTCATCCTGTTGAAGTGATGTCCGCGTGACGCTTGTTTTGATTTCTGCCTATCCCGCCACAGGTATTTGGAGACAAGCTAGATGGTTTGACAAGGAACTTTGAGCAATCTTTTGACAGCACTTTGAGTACTCTTCGATTAATTTATGAATCATCGGCTAGCAATGAAGGGAATAAATTGAATAATATGAGGTTGGAAATTCCAAGTTCTAAATTTATCAGAGGAGATTGCTCACGTGATATTGCTATAGAGGATGATCAACCAGGGCTACTATCACACGCACACGCCGAAATCGTAGATCAATCAATTAGTCGTGAAGAGGTTGGGGATAACTTCCACATGGAGTCAGTTACTCGTGATATTGCTTTGCGTGGGCAATCAAACCAAATGGTTTGTTTCGCTCCACACTCTTCTGGAGCTTTAGCTAATAATCCAGTATTTGAGAAGTCTATTATGGAGCAATGCCGTTCTAATGACCTCAAGACTGTTGAACTTGGTCTTACAATGAAAAAAATGAAATTGAAAGAGACAGAATTGGCTCTCAGATATGATTTAAATGATCTGCAGAGATCCAAGTTAGCTGTGGATATATCAAAGACATCATTCAAAGCTGAAAAGTTTAAGACTCAGTTAGAAGATACAAGATATGGTGAACTGAATAAGAAGTGCATAGACTGTCTTATTGCTGGTCTGTTCATTATGTCATCCTCACTTTTTTATGGTGCTTATGTTTATAACTTTGAACGGATTAATGAAGCTGCTGGATCATGTACTCCAGAAGAGGCAAGTATAATATTTTTCTATTCCCTGTTCCAATTTTATTCTATGCTTCAGGCAATTAAAATATTTGTTATCGCAAGATGAAAATAACTAATAGGGGATGCGTCATTAAAATTTTATTTAGAAAAGAAATCATATTTGAAAGATCACTGATAGGGGCCATATCATTGAAATATTATTTCAAAAAAAATTGAGTTTAGTGAAGATGCATTGACGATGTAAACTAGTTTTACAACGTCATCCAATAAAATCCATCATATTGTCATGTAAAGCCTATATTATAACCATTTTTTAAAGAATAATTAGCAAATATTAAATTCTTGTGAATGTCAGTGCGATATTAGTTTACACCGACGGTGCATGTCCCACTTTCTCAAAATAAATTGTATTTGTTTATATGCTTTTTTTTTCCTTGTTTAGTTTTTCATTTTTTATATACGTGATCAAATATTCTACTTATCATATTTACTTTCTTTGCAATCTAATTTAAGAACTAAGGTGCATATTATGTAAAATAGGAGGTAATTATGACAGCACTTTTCAGCATTTCCTTTGCTCAATTTGGGAATATTAACGGTGTTTTTTCTATTTTAGGAACCTTCCTACTGGTGGACTCCAAAGTCAGTGACCTGGTTAAATTCAAGTGTGCATGTTTTTTTTTGTCAAGTTCGAGTTGTGAGCCGAATGGTGTTTGGTTTCTTAATGATTATTGTTGTTGCGTATCTGCTCTTCCAACGGTCAGCAACATTGTCATCACAAACTATGCCAGTTACTTTCATCATATTGATGCTAGGAATCGGCTGTGGCTATTGTGGAACCATGTGTATAGACACACTGGGAGGAAGTGGTTACATTTGGCTCTTATATTGGGAGATTCTGTGTTTGGTGCATTTCTTATCTATATGCTGGACATCCGCTTTGTACGCAATCCTTCACGGACCAATCACAACACTGCAGACAAAGAAAGGGGATCCAATTGTCCAGTATTGGATTCGCCGGTTTCTTTTCTATGCTATTTTGCTTGTGGTTCTACCATTGTGTTGTGGTCTTCTGCCTTTTGCTAGCTTAGGTCAATGGAAAGACCATTTTATGTCGAAGGTATTTGATGACCAAGGATCAGTTATGTCGACGGTGTTTGATGACCAAGGATTAGAATTGTAA

Protein sequence

>MS.gene049368.t1

MAEIDTCSKNKAGLEICETNSYNSSQLQRTKLKGKGIACKRRNPRVSVRRTRGNNVAAIGFPLGMSVAAVMAQVLYRRDAAAESVSPDHLSSMCTSAIQESLSSVFGDKLDGLTRNFEQSFDSTLSTLRLIYESSASNEGNKLNNMRLEIPSSKFIRGDCSRDIAIEDDQPGLLSHAHAEIVDQSISREEVGDNFHMESVTRDIALRGQSNQMVCFAPHSSGALANNPVFEKSIMEQCRSNDLKTVELGLTMKKMKLKETELALRYDLNDLQRSKLAVDISKTSFKAEKFKTQLEDTRYGELNKKCIDCLIAGLFIMSSSLFYGAYVYNFERINEAAGSCTPEEAIRVVSRMVFGFLMIIVVAYLLFQRSATLSSQTMPVTFIILMLGIGCGYCGTMCIDTLGGSGYIWLLYWEILCLVHFLSICWTSALYAILHGPITTLQTKKGDPIVQYWIRRFLFYAILLVVLPLCCGLLPFASLGQWKDHFMSKVFDDQGSVMSTVFDDQGLEL