Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48697.t1 | AES87697.1 | 85.2 | 365 | 9 | 1 | 1 | 320 | 1 | 365 | 2.70E-144 | 521.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48697.t1 | F4HT21 | 53.7 | 296 | 88 | 3 | 10 | 260 | 13 | 304 | 2.0e-76 | 287.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48697.t1 | G7JN60 | 85.2 | 365 | 9 | 1 | 1 | 320 | 1 | 365 | 1.9e-144 | 521.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene009458 | MS.gene48697 | PPI |
| MS.gene48697 | MS.gene63514 | PPI |
| MS.gene51627 | MS.gene48697 | PPI |
| MS.gene48697 | MS.gene56256 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48697.t1 | MTR_4g032350 | 84.384 | 365 | 12 | 1 | 1 | 320 | 1 | 365 | 0.0 | 610 |
| MS.gene48697.t1 | MTR_4g032300 | 71.976 | 339 | 46 | 2 | 1 | 293 | 1 | 336 | 2.62e-171 | 479 |
| MS.gene48697.t1 | MTR_4g032220 | 65.559 | 331 | 63 | 2 | 10 | 289 | 9 | 339 | 5.64e-140 | 400 |
| MS.gene48697.t1 | MTR_4g032240 | 58.859 | 333 | 84 | 2 | 10 | 289 | 9 | 341 | 4.05e-129 | 372 |
| MS.gene48697.t1 | MTR_4g032330 | 79.365 | 63 | 13 | 0 | 231 | 293 | 17 | 79 | 1.92e-22 | 89.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48697.t1 | AT1G33970 | 53.106 | 322 | 102 | 3 | 10 | 286 | 13 | 330 | 1.82e-101 | 301 |
| MS.gene48697.t1 | AT1G33970 | 53.106 | 322 | 102 | 3 | 10 | 286 | 13 | 330 | 1.82e-101 | 301 |
| MS.gene48697.t1 | AT1G33970 | 53.106 | 322 | 102 | 3 | 10 | 286 | 13 | 330 | 1.82e-101 | 301 |
| MS.gene48697.t1 | AT1G33970 | 53.106 | 322 | 102 | 3 | 10 | 286 | 13 | 330 | 1.82e-101 | 301 |
| MS.gene48697.t1 | AT1G33970 | 62.281 | 228 | 81 | 3 | 10 | 236 | 13 | 236 | 4.65e-88 | 265 |
| MS.gene48697.t1 | AT1G33950 | 48.540 | 274 | 129 | 3 | 21 | 293 | 13 | 275 | 2.05e-84 | 257 |
| MS.gene48697.t1 | AT1G33900 | 50.000 | 254 | 122 | 3 | 19 | 271 | 14 | 263 | 1.13e-82 | 253 |
| MS.gene48697.t1 | AT1G33930 | 46.182 | 275 | 127 | 2 | 10 | 284 | 24 | 277 | 5.97e-81 | 249 |
| MS.gene48697.t1 | AT1G33960 | 44.923 | 325 | 158 | 8 | 13 | 320 | 33 | 353 | 7.72e-80 | 247 |
| MS.gene48697.t1 | AT1G33960 | 44.923 | 325 | 158 | 8 | 13 | 320 | 57 | 377 | 1.53e-79 | 247 |
| MS.gene48697.t1 | AT2G26820 | 46.290 | 283 | 135 | 2 | 20 | 285 | 1 | 283 | 2.03e-78 | 243 |
| MS.gene48697.t1 | AT2G26820 | 46.290 | 283 | 135 | 2 | 20 | 285 | 1 | 283 | 5.21e-78 | 243 |
| MS.gene48697.t1 | AT1G33950 | 46.715 | 274 | 128 | 4 | 21 | 293 | 13 | 269 | 1.48e-77 | 239 |
| MS.gene48697.t1 | AT2G26820 | 46.290 | 283 | 135 | 2 | 20 | 285 | 1 | 283 | 6.75e-77 | 243 |
| MS.gene48697.t1 | AT2G26820 | 46.290 | 283 | 135 | 2 | 20 | 285 | 1 | 283 | 8.79e-77 | 243 |
| MS.gene48697.t1 | AT1G33890 | 44.186 | 301 | 145 | 5 | 18 | 296 | 7 | 306 | 3.79e-72 | 226 |
| MS.gene48697.t1 | AT1G33890 | 44.186 | 301 | 145 | 5 | 18 | 296 | 7 | 306 | 3.79e-72 | 226 |
| MS.gene48697.t1 | AT4G09940 | 42.810 | 306 | 122 | 6 | 24 | 281 | 47 | 347 | 3.03e-70 | 223 |
| MS.gene48697.t1 | AT4G09940 | 42.810 | 306 | 122 | 6 | 24 | 281 | 90 | 390 | 1.63e-69 | 223 |
| MS.gene48697.t1 | AT1G33910 | 46.388 | 263 | 119 | 6 | 19 | 268 | 8 | 261 | 2.74e-69 | 218 |
| MS.gene48697.t1 | AT1G33830 | 46.544 | 217 | 115 | 1 | 26 | 242 | 10 | 225 | 1.50e-66 | 208 |
| MS.gene48697.t1 | AT4G09950 | 40.303 | 330 | 137 | 7 | 3 | 284 | 4 | 321 | 4.89e-65 | 208 |
| MS.gene48697.t1 | AT4G09930 | 41.311 | 305 | 137 | 5 | 24 | 288 | 26 | 328 | 9.48e-64 | 205 |
| MS.gene48697.t1 | AT1G33870 | 42.063 | 252 | 137 | 4 | 49 | 298 | 1 | 245 | 2.22e-62 | 199 |
| MS.gene48697.t1 | AT1G33880 | 40.278 | 216 | 123 | 2 | 18 | 233 | 17 | 226 | 5.56e-57 | 184 |
| MS.gene48697.t1 | AT1G33880 | 40.278 | 216 | 123 | 2 | 18 | 233 | 17 | 226 | 5.56e-57 | 184 |
| MS.gene48697.t1 | AT4G09950 | 37.255 | 255 | 110 | 5 | 77 | 284 | 7 | 258 | 2.58e-38 | 137 |
Find 53 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGAGCGTGCAGAAATTATT+TGG | 0.207110 | 4.3:-68444602 | MS.gene48697:CDS |
| CAGGTCTTGGTGCCGATAAT+TGG | 0.262974 | 4.3:-68445142 | MS.gene48697:CDS |
| TTAAACAGCTCATCTGTATA+AGG | 0.296242 | 4.3:+68444062 | None:intergenic |
| AATTGTCAAATGCATTGATT+TGG | 0.316668 | 4.3:-68444702 | MS.gene48697:CDS |
| TACATGATTATCGTCTTTAC+CGG | 0.324469 | 4.3:-68444563 | MS.gene48697:CDS |
| AGAATAGCACACCGATCTTC+TGG | 0.341306 | 4.3:+68442992 | None:intergenic |
| GAAACACTGGACCAGTATTT+AGG | 0.362040 | 4.3:-68444515 | MS.gene48697:CDS |
| GCAACCGGAAATAGTATTCT+TGG | 0.364280 | 4.3:-68445041 | MS.gene48697:CDS |
| TACTTCACCTTTAGAGGCTC+TGG | 0.364446 | 4.3:+68444482 | None:intergenic |
| GTCGACTGAGGCTAAGACTT+TGG | 0.404860 | 4.3:-68445096 | MS.gene48697:CDS |
| AGAAGCAAACTCCCAATTAT+CGG | 0.404869 | 4.3:+68445130 | None:intergenic |
| TACAAGGTTGGAGGAACAAT+TGG | 0.406298 | 4.3:-68443212 | MS.gene48697:CDS |
| AGGTCTTGGTGCCGATAATT+GGG | 0.419484 | 4.3:-68445141 | MS.gene48697:CDS |
| TTGCTTGGACGTACTGGGAA+TGG | 0.420013 | 4.3:-68445071 | MS.gene48697:CDS |
| GACAATCGCGACCTAAATAC+TGG | 0.463624 | 4.3:+68444504 | None:intergenic |
| TCGGTTGGAATTGAACTACT+TGG | 0.471172 | 4.3:-68444731 | MS.gene48697:CDS |
| AAGAGAGAAGTTGTTGAACT+TGG | 0.473678 | 4.3:+68444120 | None:intergenic |
| TGCTTGGACGTACTGGGAAT+GGG | 0.486276 | 4.3:-68445070 | MS.gene48697:CDS |
| GTAGGTAGAGTCAAAGTTGA+GGG | 0.496709 | 4.3:-68443242 | MS.gene48697:intron |
| CAAACAACTGAGCTTAATGA+TGG | 0.498734 | 4.3:-68444960 | MS.gene48697:CDS |
| TGAGCTGTTTAAAGAACTAA+AGG | 0.504124 | 4.3:-68444051 | MS.gene48697:intron |
| TTCTTCCAATTCATCTCCCC+CGG | 0.507786 | 4.3:+68444544 | None:intergenic |
| TGCATTGATTTGGCAAAGGA+CGG | 0.508232 | 4.3:-68444692 | MS.gene48697:CDS |
| AAGTCGAGGACTAGCTCTTC+CGG | 0.512151 | 4.3:-68445005 | MS.gene48697:CDS |
| AGGCAATTCTTTCTCTGTGT+GGG | 0.516428 | 4.3:-68444196 | MS.gene48697:CDS |
| GGGAATGGGAAGAGTGCAAC+CGG | 0.522574 | 4.3:-68445056 | MS.gene48697:CDS |
| CAAATGCATTGATTTGGCAA+AGG | 0.532228 | 4.3:-68444696 | MS.gene48697:CDS |
| AAGCACAAGGAGAACTTCGC+AGG | 0.539451 | 4.3:-68443021 | MS.gene48697:CDS |
| AGGAAGAAGAGAGTGCTCTA+CGG | 0.540042 | 4.3:-68444622 | MS.gene48697:CDS |
| AGTTGTTTGCATTTCGCATG+AGG | 0.544861 | 4.3:+68444974 | None:intergenic |
| ACATGATTATCGTCTTTACC+GGG | 0.549360 | 4.3:-68444562 | MS.gene48697:CDS |
| AGTTGAGGGCAGCAACTACA+AGG | 0.558512 | 4.3:-68443228 | MS.gene48697:CDS |
| TTCGCATGAGGTGGTGACAC+CGG | 0.562942 | 4.3:+68444986 | None:intergenic |
| CGATTGTCCAGAGCCTCTAA+AGG | 0.563031 | 4.3:-68444489 | MS.gene48697:intron |
| GAGGGCAGCAACTACAAGGT+TGG | 0.566036 | 4.3:-68443224 | MS.gene48697:CDS |
| CAGGCAATTCTTTCTCTGTG+TGG | 0.576595 | 4.3:-68444197 | MS.gene48697:CDS |
| GGAAGAAAATAATGAAACAC+TGG | 0.577525 | 4.3:-68444528 | MS.gene48697:CDS |
| AGTCTTAGCCTCAGTCGACA+TGG | 0.579628 | 4.3:+68445100 | None:intergenic |
| ACTCAGAAGAAATCTTGAGC+AGG | 0.583310 | 4.3:-68443110 | MS.gene48697:CDS |
| GTGAATGTTATCGACACTCC+AGG | 0.584952 | 4.3:-68444930 | MS.gene48697:intron |
| TTGTTCTTCCATGTCGACTG+AGG | 0.597913 | 4.3:-68445108 | MS.gene48697:CDS |
| GGCAGCAACTACAAGGTTGG+AGG | 0.599892 | 4.3:-68443221 | MS.gene48697:CDS |
| GCAGGCGAGTGCCAGAAGAT+CGG | 0.608230 | 4.3:-68443003 | MS.gene48697:CDS |
| TGTAGGTAGAGTCAAAGTTG+AGG | 0.615435 | 4.3:-68443243 | MS.gene48697:intron |
| TGTTTGCATTTCGCATGAGG+TGG | 0.621167 | 4.3:+68444977 | None:intergenic |
| AGAGCAAGCTGCAAGACTAG+AGG | 0.632155 | 4.3:-68443185 | MS.gene48697:CDS |
| ATGATGTATCATGAGCTCGC+AGG | 0.646980 | 4.3:+68443071 | None:intergenic |
| ATGATTATCGTCTTTACCGG+GGG | 0.649473 | 4.3:-68444560 | MS.gene48697:CDS |
| TGTTAGAACACGCTTTACTG+AGG | 0.655556 | 4.3:-68444642 | MS.gene48697:CDS |
| CATGATTATCGTCTTTACCG+GGG | 0.681075 | 4.3:-68444561 | MS.gene48697:CDS |
| AACGTGGTAATATCACAGAA+TGG | 0.694251 | 4.3:-68444092 | MS.gene48697:CDS |
| TAATATCACAGAATGGTGGA+CGG | 0.698141 | 4.3:-68444085 | MS.gene48697:CDS |
| GTGGTAATATCACAGAATGG+TGG | 0.698978 | 4.3:-68444089 | MS.gene48697:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATTCTCTCAAAATTT+AGG | + | chr4.3:68444438-68444457 | None:intergenic | 15.0% |
| !! | TAAATAATGTGAAAAAGATA+AGG | - | chr4.3:68443749-68443768 | MS.gene48697:intron | 15.0% |
| !! | AAAATCAAATAATCCTGTAA+TGG | + | chr4.3:68443392-68443411 | None:intergenic | 20.0% |
| !! | AAATAGTATTCTTGGAAAAA+AGG | - | chr4.3:68443110-68443129 | MS.gene48697:CDS | 20.0% |
| !! | ATGTACAAAAGAAGATATAT+TGG | - | chr4.3:68444255-68444274 | MS.gene48697:intron | 20.0% |
| !!! | CAATTGTTATATGATTTTGT+AGG | - | chr4.3:68444883-68444902 | MS.gene48697:intron | 20.0% |
| !!! | TACAGGATTATTTGATTTTT+CGG | - | chr4.3:68443393-68443412 | MS.gene48697:intron | 20.0% |
| ! | AGTCTATATTAGATACACTA+TGG | - | chr4.3:68444347-68444366 | MS.gene48697:intron | 25.0% |
| ! | ATATCAATGAATTCATCGTT+TGG | - | chr4.3:68444173-68444192 | MS.gene48697:CDS | 25.0% |
| ! | ATTGTATCACTAACAGAAAA+AGG | + | chr4.3:68444646-68444665 | None:intergenic | 25.0% |
| ! | GTTGATGTTAATATTAATGC+AGG | - | chr4.3:68443927-68443946 | MS.gene48697:intron | 25.0% |
| !! | GAAATGATGATGTATTCTTA+AGG | - | chr4.3:68444581-68444600 | MS.gene48697:CDS | 25.0% |
| !! | GCATAATCTAAGAATGATTT+TGG | - | chr4.3:68444853-68444872 | MS.gene48697:intron | 25.0% |
| !! | GTTTAAAGAACTAAAGGTAT+AGG | - | chr4.3:68444098-68444117 | MS.gene48697:CDS | 25.0% |
| !! | TTTTCCAAGAATACTATTTC+CGG | + | chr4.3:68443109-68443128 | None:intergenic | 25.0% |
| !!! | AAGTTTTGGTAGTTAAATAG+GGG | - | chr4.3:68444690-68444709 | MS.gene48697:CDS | 25.0% |
| !!! | AATTGTCAAATGCATTGATT+TGG | - | chr4.3:68443441-68443460 | MS.gene48697:intron | 25.0% |
| !!! | GAAGTTTTGGTAGTTAAATA+GGG | - | chr4.3:68444689-68444708 | MS.gene48697:CDS | 25.0% |
| ATGGAACAAAACATGCTATA+AGG | + | chr4.3:68443252-68443271 | None:intergenic | 30.0% | |
| GGAAGAAAATAATGAAACAC+TGG | - | chr4.3:68443615-68443634 | MS.gene48697:intron | 30.0% | |
| TAAGGTAAAACATCTTTACC+TGG | + | chr4.3:68443234-68443253 | None:intergenic | 30.0% | |
| TACATGATTATCGTCTTTAC+CGG | - | chr4.3:68443580-68443599 | MS.gene48697:intron | 30.0% | |
| TGAGCTGTTTAAAGAACTAA+AGG | - | chr4.3:68444092-68444111 | MS.gene48697:CDS | 30.0% | |
| TGTGTGTTTGCATTCTATTT+AGG | - | chr4.3:68444785-68444804 | MS.gene48697:intron | 30.0% | |
| TTAAACAGCTCATCTGTATA+AGG | + | chr4.3:68444084-68444103 | None:intergenic | 30.0% | |
| TTAAATAGGGGAAATTGTAG+CGG | - | chr4.3:68444702-68444721 | MS.gene48697:CDS | 30.0% | |
| ! | TCTTAATCGTATTGATCATG+CGG | - | chr4.3:68444831-68444850 | MS.gene48697:intron | 30.0% |
| ! | TTTTAGTACTTCACCTTTAG+AGG | + | chr4.3:68443670-68443689 | None:intergenic | 30.0% |
| !! | ATTCAGAAAACTGACTTGTA+AGG | + | chr4.3:68444400-68444419 | None:intergenic | 30.0% |
| !! | GCAATGGATTTTCAAAAACT+AGG | + | chr4.3:68443868-68443887 | None:intergenic | 30.0% |
| !! | GGAAGTTTTGGTAGTTAAAT+AGG | - | chr4.3:68444688-68444707 | MS.gene48697:CDS | 30.0% |
| !! | GGATTATTTGATTTTTCGGT+TGG | - | chr4.3:68443397-68443416 | MS.gene48697:intron | 30.0% |
| AACGTGGTAATATCACAGAA+TGG | - | chr4.3:68444051-68444070 | MS.gene48697:intron | 35.0% | |
| AAGAGAGAAGTTGTTGAACT+TGG | + | chr4.3:68444026-68444045 | None:intergenic | 35.0% | |
| ACATGATTATCGTCTTTACC+GGG | - | chr4.3:68443581-68443600 | MS.gene48697:intron | 35.0% | |
| AGAAGCAAACTCCCAATTAT+CGG | + | chr4.3:68443016-68443035 | None:intergenic | 35.0% | |
| ATCCATTGCTGAATCTCTAA+TGG | - | chr4.3:68443879-68443898 | MS.gene48697:intron | 35.0% | |
| ATGCAAACTAGCATGCAATT+AGG | + | chr4.3:68443818-68443837 | None:intergenic | 35.0% | |
| CAAACAACTGAGCTTAATGA+TGG | - | chr4.3:68443183-68443202 | MS.gene48697:CDS | 35.0% | |
| CAAACTTTGTGTACCATTAC+AGG | - | chr4.3:68443376-68443395 | MS.gene48697:intron | 35.0% | |
| GTTCTCTTATATCCCAACTA+AGG | + | chr4.3:68444758-68444777 | None:intergenic | 35.0% | |
| TAAATAGGGGAAATTGTAGC+GGG | - | chr4.3:68444703-68444722 | MS.gene48697:CDS | 35.0% | |
| TGCAAACTAGCATGCAATTA+GGG | + | chr4.3:68443817-68443836 | None:intergenic | 35.0% | |
| TTCCATTAGAGATTCAGCAA+TGG | + | chr4.3:68443884-68443903 | None:intergenic | 35.0% | |
| ! | AAAACTGAAGCATCCTTAGT+TGG | - | chr4.3:68444742-68444761 | MS.gene48697:CDS | 35.0% |
| ! | AAACTGAAGCATCCTTAGTT+GGG | - | chr4.3:68444743-68444762 | MS.gene48697:CDS | 35.0% |
| ! | GCTTTTCGATAACAAGACTA+AGG | - | chr4.3:68443981-68444000 | MS.gene48697:intron | 35.0% |
| ! | TAATATCACAGAATGGTGGA+CGG | - | chr4.3:68444058-68444077 | MS.gene48697:CDS | 35.0% |
| ! | TGTTCTAAACATGAACTCTG+TGG | - | chr4.3:68444808-68444827 | MS.gene48697:intron | 35.0% |
| !! | CAAATGCATTGATTTGGCAA+AGG | - | chr4.3:68443447-68443466 | MS.gene48697:intron | 35.0% |
| AAATAGGGGAAATTGTAGCG+GGG | - | chr4.3:68444704-68444723 | MS.gene48697:CDS | 40.0% | |
| ACTCAGAAGAAATCTTGAGC+AGG | - | chr4.3:68445033-68445052 | MS.gene48697:CDS | 40.0% | |
| AGGCAATTCTTTCTCTGTGT+GGG | - | chr4.3:68443947-68443966 | MS.gene48697:intron | 40.0% | |
| AGTTGTTTGCATTTCGCATG+AGG | + | chr4.3:68443172-68443191 | None:intergenic | 40.0% | |
| ATGATTATCGTCTTTACCGG+GGG | - | chr4.3:68443583-68443602 | MS.gene48697:intron | 40.0% | |
| CAGAAAAAGGATGCACATCT+CGG | + | chr4.3:68444633-68444652 | None:intergenic | 40.0% | |
| CATGATTATCGTCTTTACCG+GGG | - | chr4.3:68443582-68443601 | MS.gene48697:intron | 40.0% | |
| CGAGATTTCTGATCAAGTCA+TGG | + | chr4.3:68443271-68443290 | None:intergenic | 40.0% | |
| GAAAAAAGGTCTTCAAGTCG+AGG | - | chr4.3:68443124-68443143 | MS.gene48697:CDS | 40.0% | |
| GAAACACTGGACCAGTATTT+AGG | - | chr4.3:68443628-68443647 | MS.gene48697:intron | 40.0% | |
| GCAACCGGAAATAGTATTCT+TGG | - | chr4.3:68443102-68443121 | MS.gene48697:CDS | 40.0% | |
| GCTGCAAAAACAACAAAGAG+AGG | - | chr4.3:68444216-68444235 | MS.gene48697:intron | 40.0% | |
| GTAGGTAGAGTCAAAGTTGA+GGG | - | chr4.3:68444901-68444920 | MS.gene48697:intron | 40.0% | |
| GTGGTAATATCACAGAATGG+TGG | - | chr4.3:68444054-68444073 | MS.gene48697:CDS | 40.0% | |
| TAACTACCAAAACTTCCGAC+TGG | + | chr4.3:68444685-68444704 | None:intergenic | 40.0% | |
| TACAAGGTTGGAGGAACAAT+TGG | - | chr4.3:68444931-68444950 | MS.gene48697:CDS | 40.0% | |
| TCGGTTGGAATTGAACTACT+TGG | - | chr4.3:68443412-68443431 | MS.gene48697:intron | 40.0% | |
| TGTAGGTAGAGTCAAAGTTG+AGG | - | chr4.3:68444900-68444919 | MS.gene48697:intron | 40.0% | |
| TGTTAGAACACGCTTTACTG+AGG | - | chr4.3:68443501-68443520 | MS.gene48697:intron | 40.0% | |
| TTGGCTTCAGAAACGAGAAA+TGG | - | chr4.3:68444192-68444211 | MS.gene48697:CDS | 40.0% | |
| ! | ACTTCTCTCTTTTGTGAACG+TGG | - | chr4.3:68444035-68444054 | MS.gene48697:intron | 40.0% |
| ! | AGACATTTTGAGCAAGCACA+AGG | - | chr4.3:68445109-68445128 | MS.gene48697:CDS | 40.0% |
| ! | TTAGTACCAGTCGGAAGTTT+TGG | - | chr4.3:68444676-68444695 | MS.gene48697:CDS | 40.0% |
| !! | TGCATTGATTTGGCAAAGGA+CGG | - | chr4.3:68443451-68443470 | MS.gene48697:intron | 40.0% |
| !!! | GCTAAGACTTTGGTTTTGCT+TGG | - | chr4.3:68443057-68443076 | MS.gene48697:CDS | 40.0% |
| AGAATAGCACACCGATCTTC+TGG | + | chr4.3:68445154-68445173 | None:intergenic | 45.0% | |
| AGAGAGGCTGATGCATTGAA+AGG | - | chr4.3:68444232-68444251 | MS.gene48697:intron | 45.0% | |
| ATGATGTATCATGAGCTCGC+AGG | + | chr4.3:68445075-68445094 | None:intergenic | 45.0% | |
| CAGGCAATTCTTTCTCTGTG+TGG | - | chr4.3:68443946-68443965 | MS.gene48697:intron | 45.0% | |
| CATGTCGTCTTAGTACCAGT+CGG | - | chr4.3:68444667-68444686 | MS.gene48697:CDS | 45.0% | |
| CGGAGCGTGCAGAAATTATT+TGG | - | chr4.3:68443541-68443560 | MS.gene48697:intron | 45.0% | |
| GACAATCGCGACCTAAATAC+TGG | + | chr4.3:68443642-68443661 | None:intergenic | 45.0% | |
| GCTGAATCGCATTACTGAGA+TGG | - | chr4.3:68444315-68444334 | MS.gene48697:intron | 45.0% | |
| GTGAATGTTATCGACACTCC+AGG | - | chr4.3:68443213-68443232 | MS.gene48697:CDS | 45.0% | |
| TCTCAGTAATGCGATTCAGC+TGG | + | chr4.3:68444315-68444334 | None:intergenic | 45.0% | |
| TGTTTGCATTTCGCATGAGG+TGG | + | chr4.3:68443169-68443188 | None:intergenic | 45.0% | |
| TTCTTCCAATTCATCTCCCC+CGG | + | chr4.3:68443602-68443621 | None:intergenic | 45.0% | |
| ! | TACTTCACCTTTAGAGGCTC+TGG | + | chr4.3:68443664-68443683 | None:intergenic | 45.0% |
| ! | TTGTTCTTCCATGTCGACTG+AGG | - | chr4.3:68443035-68443054 | MS.gene48697:CDS | 45.0% |
| !! | AGGAAGAAGAGAGTGCTCTA+CGG | - | chr4.3:68443521-68443540 | MS.gene48697:intron | 45.0% |
| !! | AGGTCTTGGTGCCGATAATT+GGG | - | chr4.3:68443002-68443021 | MS.gene48697:CDS | 45.0% |
| !! | TGGTTTTGCTTGGACGTACT+GGG | - | chr4.3:68443067-68443086 | MS.gene48697:CDS | 45.0% |
| !!! | TTGGTTTTGCTTGGACGTAC+TGG | - | chr4.3:68443066-68443085 | MS.gene48697:CDS | 45.0% |
| AAGCACAAGGAGAACTTCGC+AGG | - | chr4.3:68445122-68445141 | MS.gene48697:CDS | 50.0% | |
| AGAGCAAGCTGCAAGACTAG+AGG | - | chr4.3:68444958-68444977 | MS.gene48697:CDS | 50.0% | |
| AGTCTTAGCCTCAGTCGACA+TGG | + | chr4.3:68443046-68443065 | None:intergenic | 50.0% | |
| AGTTGAGGGCAGCAACTACA+AGG | - | chr4.3:68444915-68444934 | MS.gene48697:intron | 50.0% | |
| ATGGGGGAAAGTTCAGGTCT+TGG | - | chr4.3:68442988-68443007 | MS.gene48697:CDS | 50.0% | |
| CGATTGTCCAGAGCCTCTAA+AGG | - | chr4.3:68443654-68443673 | MS.gene48697:intron | 50.0% | |
| CTTTACCGGGGGAGATGAAT+TGG | - | chr4.3:68443594-68443613 | MS.gene48697:intron | 50.0% | |
| GTCGACTGAGGCTAAGACTT+TGG | - | chr4.3:68443047-68443066 | MS.gene48697:CDS | 50.0% | |
| TGCTTGGACGTACTGGGAAT+GGG | - | chr4.3:68443073-68443092 | MS.gene48697:CDS | 50.0% | |
| TTGCTTGGACGTACTGGGAA+TGG | - | chr4.3:68443072-68443091 | MS.gene48697:CDS | 50.0% | |
| !! | AAGTCGAGGACTAGCTCTTC+CGG | - | chr4.3:68443138-68443157 | MS.gene48697:CDS | 50.0% |
| !! | CAGGTCTTGGTGCCGATAAT+TGG | - | chr4.3:68443001-68443020 | MS.gene48697:CDS | 50.0% |
| GAGGGCAGCAACTACAAGGT+TGG | - | chr4.3:68444919-68444938 | MS.gene48697:intron | 55.0% | |
| GGCAGCAACTACAAGGTTGG+AGG | - | chr4.3:68444922-68444941 | MS.gene48697:intron | 55.0% | |
| TTCGCATGAGGTGGTGACAC+CGG | + | chr4.3:68443160-68443179 | None:intergenic | 55.0% | |
| ! | GGGAAATTGTAGCGGGGCTT+AGG | - | chr4.3:68444710-68444729 | MS.gene48697:CDS | 55.0% |
| ! | GGGAATGGGAAGAGTGCAAC+CGG | - | chr4.3:68443087-68443106 | MS.gene48697:CDS | 55.0% |
| GCAGGCGAGTGCCAGAAGAT+CGG | - | chr4.3:68445140-68445159 | MS.gene48697:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 68442988 | 68445177 | 68442988 | ID=MS.gene48697 |
| chr4.3 | mRNA | 68442988 | 68445177 | 68442988 | ID=MS.gene48697.t1;Parent=MS.gene48697 |
| chr4.3 | exon | 68444931 | 68445177 | 68444931 | ID=MS.gene48697.t1.exon1;Parent=MS.gene48697.t1 |
| chr4.3 | CDS | 68444931 | 68445177 | 68444931 | ID=cds.MS.gene48697.t1;Parent=MS.gene48697.t1 |
| chr4.3 | exon | 68444490 | 68444767 | 68444490 | ID=MS.gene48697.t1.exon2;Parent=MS.gene48697.t1 |
| chr4.3 | CDS | 68444490 | 68444767 | 68444490 | ID=cds.MS.gene48697.t1;Parent=MS.gene48697.t1 |
| chr4.3 | exon | 68444052 | 68444216 | 68444052 | ID=MS.gene48697.t1.exon3;Parent=MS.gene48697.t1 |
| chr4.3 | CDS | 68444052 | 68444216 | 68444052 | ID=cds.MS.gene48697.t1;Parent=MS.gene48697.t1 |
| chr4.3 | exon | 68442988 | 68443260 | 68442988 | ID=MS.gene48697.t1.exon4;Parent=MS.gene48697.t1 |
| chr4.3 | CDS | 68442988 | 68443260 | 68442988 | ID=cds.MS.gene48697.t1;Parent=MS.gene48697.t1 |
| Gene Sequence |
| Protein sequence |
