Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48700.t1 | XP_003605495.1 | 94.1 | 340 | 19 | 1 | 1 | 339 | 1 | 340 | 1.40E-159 | 572.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48700.t1 | F4HT21 | 55.3 | 302 | 132 | 2 | 1 | 302 | 6 | 304 | 1.3e-81 | 304.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48700.t1 | G7JN55 | 94.1 | 340 | 19 | 1 | 1 | 339 | 1 | 340 | 1.0e-159 | 572.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene51627 | MS.gene48700 | PPI |
| MS.gene009458 | MS.gene48700 | PPI |
| MS.gene48700 | MS.gene56256 | PPI |
| MS.gene48700 | MS.gene63514 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48700.t1 | MTR_4g032300 | 95.882 | 340 | 13 | 1 | 1 | 339 | 1 | 340 | 0.0 | 673 |
| MS.gene48700.t1 | MTR_4g032350 | 81.657 | 338 | 59 | 1 | 1 | 335 | 1 | 338 | 0.0 | 555 |
| MS.gene48700.t1 | MTR_4g032220 | 72.126 | 348 | 86 | 2 | 1 | 339 | 2 | 347 | 1.62e-170 | 478 |
| MS.gene48700.t1 | MTR_4g032240 | 66.571 | 350 | 103 | 4 | 1 | 339 | 2 | 348 | 7.77e-160 | 451 |
| MS.gene48700.t1 | MTR_4g032330 | 94.030 | 67 | 4 | 0 | 273 | 339 | 17 | 83 | 3.25e-36 | 126 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48700.t1 | AT1G33970 | 60.061 | 328 | 128 | 2 | 1 | 328 | 6 | 330 | 1.41e-124 | 361 |
| MS.gene48700.t1 | AT1G33970 | 60.061 | 328 | 128 | 2 | 1 | 328 | 6 | 330 | 1.41e-124 | 361 |
| MS.gene48700.t1 | AT1G33970 | 60.061 | 328 | 128 | 2 | 1 | 328 | 6 | 330 | 1.41e-124 | 361 |
| MS.gene48700.t1 | AT1G33970 | 60.061 | 328 | 128 | 2 | 1 | 328 | 6 | 330 | 1.41e-124 | 361 |
| MS.gene48700.t1 | AT1G33970 | 60.806 | 273 | 104 | 2 | 1 | 273 | 6 | 275 | 6.81e-104 | 306 |
| MS.gene48700.t1 | AT1G33950 | 50.365 | 274 | 135 | 1 | 17 | 290 | 12 | 284 | 6.50e-91 | 274 |
| MS.gene48700.t1 | AT1G33900 | 47.273 | 275 | 144 | 1 | 11 | 285 | 9 | 282 | 2.12e-88 | 268 |
| MS.gene48700.t1 | AT1G33950 | 48.540 | 274 | 134 | 2 | 17 | 290 | 12 | 278 | 5.17e-84 | 256 |
| MS.gene48700.t1 | AT1G33960 | 51.504 | 266 | 128 | 1 | 15 | 280 | 36 | 300 | 1.09e-83 | 257 |
| MS.gene48700.t1 | AT1G33930 | 47.636 | 275 | 143 | 1 | 5 | 279 | 19 | 292 | 1.80e-83 | 256 |
| MS.gene48700.t1 | AT1G33960 | 51.504 | 266 | 128 | 1 | 15 | 280 | 60 | 324 | 2.11e-83 | 257 |
| MS.gene48700.t1 | AT4G09940 | 45.806 | 310 | 160 | 7 | 3 | 309 | 31 | 335 | 2.02e-82 | 255 |
| MS.gene48700.t1 | AT4G09950 | 45.399 | 326 | 166 | 8 | 4 | 326 | 5 | 321 | 3.66e-82 | 253 |
| MS.gene48700.t1 | AT4G09940 | 45.806 | 310 | 160 | 7 | 3 | 309 | 74 | 378 | 1.63e-81 | 254 |
| MS.gene48700.t1 | AT1G33890 | 47.253 | 273 | 143 | 1 | 13 | 285 | 5 | 276 | 8.21e-81 | 249 |
| MS.gene48700.t1 | AT1G33890 | 47.253 | 273 | 143 | 1 | 13 | 285 | 5 | 276 | 8.21e-81 | 249 |
| MS.gene48700.t1 | AT2G26820 | 42.222 | 315 | 169 | 3 | 16 | 319 | 2 | 314 | 2.25e-76 | 239 |
| MS.gene48700.t1 | AT2G26820 | 42.540 | 315 | 168 | 3 | 16 | 319 | 2 | 314 | 3.76e-76 | 239 |
| MS.gene48700.t1 | AT1G33910 | 48.352 | 273 | 129 | 5 | 15 | 285 | 9 | 271 | 5.27e-76 | 236 |
| MS.gene48700.t1 | AT2G26820 | 42.581 | 310 | 167 | 2 | 21 | 319 | 5 | 314 | 9.29e-75 | 238 |
| MS.gene48700.t1 | AT2G26820 | 43.878 | 294 | 154 | 2 | 21 | 303 | 5 | 298 | 1.25e-73 | 235 |
| MS.gene48700.t1 | AT4G09930 | 42.188 | 320 | 172 | 7 | 22 | 339 | 27 | 335 | 1.64e-70 | 223 |
| MS.gene48700.t1 | AT1G33870 | 43.590 | 234 | 130 | 1 | 46 | 279 | 1 | 232 | 2.37e-65 | 207 |
| MS.gene48700.t1 | AT1G33830 | 47.343 | 207 | 109 | 0 | 21 | 227 | 8 | 214 | 2.13e-64 | 204 |
| MS.gene48700.t1 | AT1G33880 | 42.029 | 207 | 114 | 2 | 21 | 227 | 23 | 223 | 1.91e-55 | 181 |
| MS.gene48700.t1 | AT1G33880 | 42.029 | 207 | 114 | 2 | 21 | 227 | 23 | 223 | 1.91e-55 | 181 |
| MS.gene48700.t1 | AT4G09950 | 42.745 | 255 | 141 | 5 | 74 | 326 | 7 | 258 | 1.06e-53 | 177 |
Find 63 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAAATAAAATACCTTTAA+AGG | 0.131663 | 4.3:+68478714 | None:intergenic |
| CGTAGTGTGCAGAAATTATT+TGG | 0.186995 | 4.3:-68478840 | MS.gene48700:CDS |
| TAAAATACCTTTAAAGGTTC+TGG | 0.248901 | 4.3:+68478720 | None:intergenic |
| CACATGATTGTGGTCTTTAC+CGG | 0.249622 | 4.3:-68478801 | MS.gene48700:CDS |
| TCTGTTGGAATTGAACTTCT+TGG | 0.274494 | 4.3:-68478969 | MS.gene48700:CDS |
| TGACTGTCCAGAACCTTTAA+AGG | 0.282159 | 4.3:-68478727 | MS.gene48700:intron |
| TTGAATAACTCATCTCTATA+AGG | 0.283431 | 4.3:+68478255 | None:intergenic |
| GAGACACTGGACGATTATTT+AGG | 0.320276 | 4.3:-68478753 | MS.gene48700:CDS |
| GCAACTGGTAATAGTATTCT+TGG | 0.337733 | 4.3:-68479330 | MS.gene48700:CDS |
| AATAGTCAAGTGCATTGATT+TGG | 0.357598 | 4.3:-68478940 | MS.gene48700:CDS |
| AGTTGCACTCTTGCCATTGC+CGG | 0.395880 | 4.3:+68479347 | None:intergenic |
| AACTCGAGGGCTAGCTCTTC+CGG | 0.409222 | 4.3:-68479294 | MS.gene48700:CDS |
| ATATTCAAAAGAATATATAT+TGG | 0.422703 | 4.3:-68478082 | MS.gene48700:CDS |
| GACAGCATGGATTCCATCCT+TGG | 0.423615 | 4.3:+68478917 | None:intergenic |
| TGAGTTATTCAAAGAACTAA+AGG | 0.437815 | 4.3:-68478244 | MS.gene48700:intron |
| CTCAGTGAATCGTGTTCTTA+CGG | 0.439237 | 4.3:+68478881 | None:intergenic |
| GGCAATGGCAAGAGTGCAAC+TGG | 0.443732 | 4.3:-68479345 | MS.gene48700:CDS |
| ACATGATTGTGGTCTTTACC+GGG | 0.452744 | 4.3:-68478800 | MS.gene48700:CDS |
| ACCAATGTCTTAACATCATT+AGG | 0.462811 | 4.3:+68479384 | None:intergenic |
| GTAGGTTGAGTCAAAGTTGA+GGG | 0.472777 | 4.3:-68477774 | MS.gene48700:intron |
| TTGGTCTTGGTTGGACGTAC+CGG | 0.477769 | 4.3:-68479366 | MS.gene48700:CDS |
| TGCATTGATTTGGCCAAGGA+TGG | 0.480665 | 4.3:-68478930 | MS.gene48700:CDS |
| TTCGCTGCAGAAAGGACAAA+TGG | 0.490581 | 4.3:-68478145 | MS.gene48700:intron |
| TGATGTTAAGACATTGGTCT+TGG | 0.495032 | 4.3:-68479379 | MS.gene48700:CDS |
| TTGGTTGGACGTACCGGCAA+TGG | 0.510282 | 4.3:-68479360 | MS.gene48700:CDS |
| TTCTTCCAATTCATCTCCCC+CGG | 0.516121 | 4.3:+68478782 | None:intergenic |
| GAGGGAAGCAACTACAAGGC+TGG | 0.525548 | 4.3:-68477756 | MS.gene48700:CDS |
| GTTAAGACATTGGTCTTGGT+TGG | 0.532768 | 4.3:-68479375 | MS.gene48700:CDS |
| GCTACTAGTATATCAGAGAA+TGG | 0.540658 | 4.3:+68477577 | None:intergenic |
| TACAAGGCTGGAGCTACGAT+TGG | 0.543348 | 4.3:-68477744 | MS.gene48700:CDS |
| AGATGAATTGGAAGAAAATG+AGG | 0.546063 | 4.3:-68478775 | MS.gene48700:CDS |
| AGAGAGGCTGATTCCATGAA+AGG | 0.551453 | 4.3:-68478105 | MS.gene48700:CDS |
| GCCTAATGATGTTAAGACAT+TGG | 0.554098 | 4.3:-68479385 | MS.gene48700:CDS |
| TGTCAGTAATTCGAGTCAGC+TGG | 0.561062 | 4.3:+68478025 | None:intergenic |
| TTCACACGAGGTGGTGACAC+CGG | 0.575045 | 4.3:+68479275 | None:intergenic |
| GAGAATGGCACAACTAGTCT+CGG | 0.577852 | 4.3:+68477592 | None:intergenic |
| CAAGTGCATTGATTTGGCCA+AGG | 0.581776 | 4.3:-68478934 | MS.gene48700:CDS |
| AGTTGAGGGAAGCAACTACA+AGG | 0.583604 | 4.3:-68477760 | MS.gene48700:CDS |
| TAGTCTCGGCATCTCGCTTG+CGG | 0.584670 | 4.3:+68477606 | None:intergenic |
| CAGGCAATTCTGTCTTTGTG+TGG | 0.599806 | 4.3:-68478390 | MS.gene48700:CDS |
| TTAAAGGTTCTGGACAGTCA+CGG | 0.601410 | 4.3:+68478730 | None:intergenic |
| TGTAGGTTGAGTCAAAGTTG+AGG | 0.603125 | 4.3:-68477775 | MS.gene48700:intron |
| GGAAGAAAATGAGGAGACAC+TGG | 0.603743 | 4.3:-68478766 | MS.gene48700:CDS |
| GTTAATGTTATCGATAGCCC+AGG | 0.610949 | 4.3:-68479219 | MS.gene48700:intron |
| ACTTGTCTGCATTTCACACG+AGG | 0.612967 | 4.3:+68479263 | None:intergenic |
| AATTGTTGACCACATGATTG+TGG | 0.613289 | 4.3:-68478811 | MS.gene48700:CDS |
| AGAACACCACAAGGACAGCA+TGG | 0.616006 | 4.3:+68478904 | None:intergenic |
| ACTAAGAAGACATCTTGAGC+AGG | 0.618632 | 4.3:-68477642 | MS.gene48700:CDS |
| TGGAATCCATGCTGTCCTTG+TGG | 0.619644 | 4.3:-68478910 | MS.gene48700:CDS |
| ATGATTGTGGTCTTTACCGG+GGG | 0.624456 | 4.3:-68478798 | MS.gene48700:CDS |
| AGGCAATTCTGTCTTTGTGT+GGG | 0.625043 | 4.3:-68478389 | MS.gene48700:CDS |
| AACATGGTAGTATCACAGAA+TGG | 0.631874 | 4.3:-68478285 | MS.gene48700:CDS |
| AGAGCAAGCTGCAAGACTAG+AGG | 0.632155 | 4.3:-68477717 | MS.gene48700:CDS |
| TGTCTTAACATCATTAGGCG+AGG | 0.652337 | 4.3:+68479389 | None:intergenic |
| CATGATTGTGGTCTTTACCG+GGG | 0.664288 | 4.3:-68478799 | MS.gene48700:CDS |
| TTCTTACGGAGAACACCACA+AGG | 0.679464 | 4.3:+68478895 | None:intergenic |
| TGTCTGCATTTCACACGAGG+TGG | 0.683107 | 4.3:+68479266 | None:intergenic |
| CGGTAAAGACCACAATCATG+TGG | 0.683165 | 4.3:+68478802 | None:intergenic |
| AAGAACACGATTCACTGAGG+AGG | 0.684223 | 4.3:-68478877 | MS.gene48700:CDS |
| ATGGTAGTATCACAGAATGG+TGG | 0.686278 | 4.3:-68478282 | MS.gene48700:CDS |
| CAGACAAGTGAGATGAACGA+TGG | 0.694102 | 4.3:-68479249 | MS.gene48700:CDS |
| GCTGACTCGAATTACTGACA+TGG | 0.703069 | 4.3:-68478022 | MS.gene48700:intron |
| CGTAAGAACACGATTCACTG+AGG | 0.738794 | 4.3:-68478880 | MS.gene48700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATAAAATACCTTTAA+AGG | + | chr4.3:68478313-68478332 | None:intergenic | 10.0% |
| !! | ATATTCAAAAGAATATATAT+TGG | - | chr4.3:68478942-68478961 | MS.gene48700:CDS | 10.0% |
| !!! | ATTTTATTTGATCAATTATA+TGG | - | chr4.3:68479223-68479242 | MS.gene48700:CDS | 10.0% |
| !!! | AAACTTTAAAAATTTCACTT+TGG | - | chr4.3:68478452-68478471 | MS.gene48700:intron | 15.0% |
| !!! | AAATTTTGTACAAAAAACAA+TGG | + | chr4.3:68479152-68479171 | None:intergenic | 15.0% |
| !!! | CTTTTCTTTTTATTGTTTAT+TGG | - | chr4.3:68478349-68478368 | MS.gene48700:CDS | 15.0% |
| !!! | TTGTTTTTTGTACAAAATTT+TGG | - | chr4.3:68479152-68479171 | MS.gene48700:intron | 15.0% |
| !!! | TTTATTGGATTTTAAACATT+TGG | - | chr4.3:68478364-68478383 | MS.gene48700:CDS | 15.0% |
| !!! | AAAAACATTTTTCTGGTTAA+AGG | + | chr4.3:68478017-68478036 | None:intergenic | 20.0% |
| ! | AGTAAGCTTTCTTAATCATT+TGG | - | chr4.3:68478427-68478446 | MS.gene48700:intron | 25.0% |
| ! | ATAAAATTCGGTTGCTAAAT+AGG | + | chr4.3:68477939-68477958 | None:intergenic | 25.0% |
| ! | ATCTTAACATAAGCAGTATT+TGG | - | chr4.3:68477835-68477854 | MS.gene48700:intron | 25.0% |
| ! | ATGTTAAGATGTATTTACCT+GGG | + | chr4.3:68477825-68477844 | None:intergenic | 25.0% |
| ! | TATGTTAAGATGTATTTACC+TGG | + | chr4.3:68477826-68477845 | None:intergenic | 25.0% |
| ! | TGAGTTATTCAAAGAACTAA+AGG | - | chr4.3:68478780-68478799 | MS.gene48700:CDS | 25.0% |
| ! | TTGAATAACTCATCTCTATA+AGG | + | chr4.3:68478772-68478791 | None:intergenic | 25.0% |
| !! | ATCCTGTAAAAACATTTTTC+TGG | + | chr4.3:68478024-68478043 | None:intergenic | 25.0% |
| !! | GTTTCTATGGATTTATGTTT+TGG | - | chr4.3:68478401-68478420 | MS.gene48700:intron | 25.0% |
| !! | TAAAATACCTTTAAAGGTTC+TGG | + | chr4.3:68478307-68478326 | None:intergenic | 25.0% |
| !! | TTCTTTTGAATATCCTTTCA+TGG | + | chr4.3:68478935-68478954 | None:intergenic | 25.0% |
| !!! | AACCAGAAAAATGTTTTTAC+AGG | - | chr4.3:68478019-68478038 | MS.gene48700:intron | 25.0% |
| !!! | AGTTTTTTCTGTTGATGATT+GGG | - | chr4.3:68477603-68477622 | MS.gene48700:CDS | 25.0% |
| !!! | GATCAATTATATGGTTTTGT+AGG | - | chr4.3:68479232-68479251 | MS.gene48700:CDS | 25.0% |
| !!! | GGATTATTTGATTTTTCTGT+TGG | - | chr4.3:68478040-68478059 | MS.gene48700:CDS | 25.0% |
| !!! | TTGTACAAAATTTTGGAAGT+AGG | - | chr4.3:68479159-68479178 | MS.gene48700:intron | 25.0% |
| AAAAAAAGTCTTCAACTCGA+GGG | - | chr4.3:68477717-68477736 | MS.gene48700:CDS | 30.0% | |
| AAAACAATGGACACTTATGT+TGG | + | chr4.3:68479139-68479158 | None:intergenic | 30.0% | |
| AATCATTATATGCACAGAAG+TGG | - | chr4.3:68479083-68479102 | MS.gene48700:intron | 30.0% | |
| ACCAATGTCTTAACATCATT+AGG | + | chr4.3:68477643-68477662 | None:intergenic | 30.0% | |
| AGATGAATTGGAAGAAAATG+AGG | - | chr4.3:68478249-68478268 | MS.gene48700:CDS | 30.0% | |
| ATCATTATATGCACAGAAGT+GGG | - | chr4.3:68479084-68479103 | MS.gene48700:intron | 30.0% | |
| ATTGGAGCTTAAAAAGCAAA+GGG | - | chr4.3:68478960-68478979 | MS.gene48700:CDS | 30.0% | |
| TAGACACCCATCATAAAATT+CGG | + | chr4.3:68477951-68477970 | None:intergenic | 30.0% | |
| TAGTACTTTCTCCAAAACTT+GGG | + | chr4.3:68478508-68478527 | None:intergenic | 30.0% | |
| TATTGGAGCTTAAAAAGCAA+AGG | - | chr4.3:68478959-68478978 | MS.gene48700:CDS | 30.0% | |
| TGCCTGCATAATTTAACAAA+AGG | + | chr4.3:68478620-68478639 | None:intergenic | 30.0% | |
| TTAGTACTTTCTCCAAAACT+TGG | + | chr4.3:68478509-68478528 | None:intergenic | 30.0% | |
| ! | ACTTCTCTCTTTTGTAAACA+TGG | - | chr4.3:68478723-68478742 | MS.gene48700:intron | 30.0% |
| ! | GCTTTTCGATAACAAAACTA+AGG | - | chr4.3:68478669-68478688 | MS.gene48700:intron | 30.0% |
| ! | GTCCTTTTGTTAAATTATGC+AGG | - | chr4.3:68478615-68478634 | MS.gene48700:intron | 30.0% |
| ! | TAGCAACCGAATTTTATGAT+GGG | - | chr4.3:68477942-68477961 | MS.gene48700:intron | 30.0% |
| ! | TTAGCAACCGAATTTTATGA+TGG | - | chr4.3:68477941-68477960 | MS.gene48700:intron | 30.0% |
| ! | TTTTGTATGATACACTTCCT+AGG | - | chr4.3:68478571-68478590 | MS.gene48700:intron | 30.0% |
| !! | AATAGTCAAGTGCATTGATT+TGG | - | chr4.3:68478084-68478103 | MS.gene48700:CDS | 30.0% |
| !! | TTTATGATGGGTGTCTAAAT+TGG | - | chr4.3:68477954-68477973 | MS.gene48700:intron | 30.0% |
| !!! | CAGTTTTTTCTGTTGATGAT+TGG | - | chr4.3:68477602-68477621 | MS.gene48700:CDS | 30.0% |
| AACATGGTAGTATCACAGAA+TGG | - | chr4.3:68478739-68478758 | MS.gene48700:CDS | 35.0% | |
| AATTGTTGACCACATGATTG+TGG | - | chr4.3:68478213-68478232 | MS.gene48700:intron | 35.0% | |
| CAAATGGAGTTCAAAAACCT+AGG | + | chr4.3:68478591-68478610 | None:intergenic | 35.0% | |
| CGTAGTGTGCAGAAATTATT+TGG | - | chr4.3:68478184-68478203 | MS.gene48700:intron | 35.0% | |
| GAAAAAAAGTCTTCAACTCG+AGG | - | chr4.3:68477716-68477735 | MS.gene48700:CDS | 35.0% | |
| GCAACTGGTAATAGTATTCT+TGG | - | chr4.3:68477694-68477713 | MS.gene48700:CDS | 35.0% | |
| GCCTAATGATGTTAAGACAT+TGG | - | chr4.3:68477639-68477658 | MS.gene48700:CDS | 35.0% | |
| TAACAAAAGGACTCAGCAAA+TGG | + | chr4.3:68478607-68478626 | None:intergenic | 35.0% | |
| TCATTATATGCACAGAAGTG+GGG | - | chr4.3:68479085-68479104 | MS.gene48700:intron | 35.0% | |
| TCTGTTGGAATTGAACTTCT+TGG | - | chr4.3:68478055-68478074 | MS.gene48700:CDS | 35.0% | |
| TTGGTTGTCAAATGAGTTTG+TGG | - | chr4.3:68477973-68477992 | MS.gene48700:intron | 35.0% | |
| ! | AAACGTGTTTTCCCAAGTTT+TGG | - | chr4.3:68478494-68478513 | MS.gene48700:intron | 35.0% |
| ! | TGATGTTAAGACATTGGTCT+TGG | - | chr4.3:68477645-68477664 | MS.gene48700:CDS | 35.0% |
| ACATGATTGTGGTCTTTACC+GGG | - | chr4.3:68478224-68478243 | MS.gene48700:intron | 40.0% | |
| ACTAAGAAGACATCTTGAGC+AGG | - | chr4.3:68479382-68479401 | MS.gene48700:CDS | 40.0% | |
| AGGCAATTCTGTCTTTGTGT+GGG | - | chr4.3:68478635-68478654 | MS.gene48700:intron | 40.0% | |
| ATGGTAGTATCACAGAATGG+TGG | - | chr4.3:68478742-68478761 | MS.gene48700:CDS | 40.0% | |
| CACATGATTGTGGTCTTTAC+CGG | - | chr4.3:68478223-68478242 | MS.gene48700:intron | 40.0% | |
| CAGCGAAACGATGAATTCAT+TGG | + | chr4.3:68478866-68478885 | None:intergenic | 40.0% | |
| CTCAGTGAATCGTGTTCTTA+CGG | + | chr4.3:68478146-68478165 | None:intergenic | 40.0% | |
| GAGACACTGGACGATTATTT+AGG | - | chr4.3:68478271-68478290 | MS.gene48700:CDS | 40.0% | |
| GCTGCAAAAACAACAAAGAG+AGG | - | chr4.3:68478903-68478922 | MS.gene48700:CDS | 40.0% | |
| GTTAATGTTATCGATAGCCC+AGG | - | chr4.3:68477805-68477824 | MS.gene48700:intron | 40.0% | |
| TGACTGTCCAGAACCTTTAA+AGG | - | chr4.3:68478297-68478316 | MS.gene48700:CDS | 40.0% | |
| TGTCTTAACATCATTAGGCG+AGG | + | chr4.3:68477638-68477657 | None:intergenic | 40.0% | |
| ! | GTAGGTTGAGTCAAAGTTGA+GGG | - | chr4.3:68479250-68479269 | MS.gene48700:CDS | 40.0% |
| ! | TGTAGGTTGAGTCAAAGTTG+AGG | - | chr4.3:68479249-68479268 | MS.gene48700:CDS | 40.0% |
| !! | GCATTGTGAAGCTGTTTCTA+TGG | - | chr4.3:68478388-68478407 | MS.gene48700:CDS | 40.0% |
| !! | GTTAAGACATTGGTCTTGGT+TGG | - | chr4.3:68477649-68477668 | MS.gene48700:CDS | 40.0% |
| !! | TTAAAGGTTCTGGACAGTCA+CGG | + | chr4.3:68478297-68478316 | None:intergenic | 40.0% |
| AAGAACACGATTCACTGAGG+AGG | - | chr4.3:68478147-68478166 | MS.gene48700:intron | 45.0% | |
| ACTTGTCTGCATTTCACACG+AGG | + | chr4.3:68477764-68477783 | None:intergenic | 45.0% | |
| AGTTGAGGGAAGCAACTACA+AGG | - | chr4.3:68479264-68479283 | MS.gene48700:CDS | 45.0% | |
| ATGATTGTGGTCTTTACCGG+GGG | - | chr4.3:68478226-68478245 | MS.gene48700:intron | 45.0% | |
| ATGGACACTTATGTTGGCCA+AGG | + | chr4.3:68479133-68479152 | None:intergenic | 45.0% | |
| CAGACAAGTGAGATGAACGA+TGG | - | chr4.3:68477775-68477794 | MS.gene48700:intron | 45.0% | |
| CAGGCAATTCTGTCTTTGTG+TGG | - | chr4.3:68478634-68478653 | MS.gene48700:intron | 45.0% | |
| CATGATTGTGGTCTTTACCG+GGG | - | chr4.3:68478225-68478244 | MS.gene48700:intron | 45.0% | |
| CGGTAAAGACCACAATCATG+TGG | + | chr4.3:68478225-68478244 | None:intergenic | 45.0% | |
| CGTAAGAACACGATTCACTG+AGG | - | chr4.3:68478144-68478163 | MS.gene48700:intron | 45.0% | |
| GCTAAATAGGTCGCTAGCTA+AGG | + | chr4.3:68477926-68477945 | None:intergenic | 45.0% | |
| GGAAGAAAATGAGGAGACAC+TGG | - | chr4.3:68478258-68478277 | MS.gene48700:CDS | 45.0% | |
| TGGACACTTATGTTGGCCAA+GGG | + | chr4.3:68479132-68479151 | None:intergenic | 45.0% | |
| TGTCAGTAATTCGAGTCAGC+TGG | + | chr4.3:68479002-68479021 | None:intergenic | 45.0% | |
| TTCATCGTTTCGCTGCAGAA+AGG | - | chr4.3:68478871-68478890 | MS.gene48700:CDS | 45.0% | |
| TTCGCTGCAGAAAGGACAAA+TGG | - | chr4.3:68478879-68478898 | MS.gene48700:CDS | 45.0% | |
| TTCTTACGGAGAACACCACA+AGG | + | chr4.3:68478132-68478151 | None:intergenic | 45.0% | |
| TTCTTCCAATTCATCTCCCC+CGG | + | chr4.3:68478245-68478264 | None:intergenic | 45.0% | |
| ! | AGAGAGGCTGATTCCATGAA+AGG | - | chr4.3:68478919-68478938 | MS.gene48700:CDS | 45.0% |
| ! | GAGAATGGCACAACTAGTCT+CGG | + | chr4.3:68479435-68479454 | None:intergenic | 45.0% |
| !! | CAAGTGCATTGATTTGGCCA+AGG | - | chr4.3:68478090-68478109 | MS.gene48700:CDS | 45.0% |
| !! | GCTGACTCGAATTACTGACA+TGG | - | chr4.3:68479002-68479021 | MS.gene48700:intron | 45.0% |
| !! | TGCATTGATTTGGCCAAGGA+TGG | - | chr4.3:68478094-68478113 | MS.gene48700:CDS | 45.0% |
| ACACTTATGTTGGCCAAGGG+TGG | + | chr4.3:68479129-68479148 | None:intergenic | 50.0% | |
| ACTTATGTTGGCCAAGGGTG+GGG | + | chr4.3:68479127-68479146 | None:intergenic | 50.0% | |
| AGAACACCACAAGGACAGCA+TGG | + | chr4.3:68478123-68478142 | None:intergenic | 50.0% | |
| AGAGCAAGCTGCAAGACTAG+AGG | - | chr4.3:68479307-68479326 | MS.gene48700:CDS | 50.0% | |
| AGTTGCACTCTTGCCATTGC+CGG | + | chr4.3:68477680-68477699 | None:intergenic | 50.0% | |
| CACTTATGTTGGCCAAGGGT+GGG | + | chr4.3:68479128-68479147 | None:intergenic | 50.0% | |
| CTTTACCGGGGGAGATGAAT+TGG | - | chr4.3:68478237-68478256 | MS.gene48700:intron | 50.0% | |
| GACAGCATGGATTCCATCCT+TGG | + | chr4.3:68478110-68478129 | None:intergenic | 50.0% | |
| TACAAGGCTGGAGCTACGAT+TGG | - | chr4.3:68479280-68479299 | MS.gene48700:CDS | 50.0% | |
| TGGAATCCATGCTGTCCTTG+TGG | - | chr4.3:68478114-68478133 | MS.gene48700:CDS | 50.0% | |
| TGTCTGCATTTCACACGAGG+TGG | + | chr4.3:68477761-68477780 | None:intergenic | 50.0% | |
| !! | TTGGTCTTGGTTGGACGTAC+CGG | - | chr4.3:68477658-68477677 | MS.gene48700:CDS | 50.0% |
| CTTATGTTGGCCAAGGGTGG+GGG | + | chr4.3:68479126-68479145 | None:intergenic | 55.0% | |
| GAGGGAAGCAACTACAAGGC+TGG | - | chr4.3:68479268-68479287 | MS.gene48700:CDS | 55.0% | |
| GCACAGAAGTGGGGAGTTGT+GGG | - | chr4.3:68479094-68479113 | MS.gene48700:intron | 55.0% | |
| TAGTCTCGGCATCTCGCTTG+CGG | + | chr4.3:68479421-68479440 | None:intergenic | 55.0% | |
| TGCACAGAAGTGGGGAGTTG+TGG | - | chr4.3:68479093-68479112 | MS.gene48700:intron | 55.0% | |
| TTCACACGAGGTGGTGACAC+CGG | + | chr4.3:68477752-68477771 | None:intergenic | 55.0% | |
| ! | GGCAATGGCAAGAGTGCAAC+TGG | - | chr4.3:68477679-68477698 | MS.gene48700:CDS | 55.0% |
| ! | TTGGTTGGACGTACCGGCAA+TGG | - | chr4.3:68477664-68477683 | MS.gene48700:CDS | 55.0% |
| !! | AACTCGAGGGCTAGCTCTTC+CGG | - | chr4.3:68477730-68477749 | MS.gene48700:CDS | 55.0% |
| TGGGTTCGAACCCCCACCCT+TGG | - | chr4.3:68479113-68479132 | MS.gene48700:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 68477589 | 68479457 | 68477589 | ID=MS.gene48700 |
| chr4.3 | mRNA | 68477589 | 68479457 | 68477589 | ID=MS.gene48700.t1;Parent=MS.gene48700 |
| chr4.3 | exon | 68479220 | 68479457 | 68479220 | ID=MS.gene48700.t1.exon1;Parent=MS.gene48700.t1 |
| chr4.3 | CDS | 68479220 | 68479457 | 68479220 | ID=cds.MS.gene48700.t1;Parent=MS.gene48700.t1 |
| chr4.3 | exon | 68478728 | 68479005 | 68478728 | ID=MS.gene48700.t1.exon2;Parent=MS.gene48700.t1 |
| chr4.3 | CDS | 68478728 | 68479005 | 68478728 | ID=cds.MS.gene48700.t1;Parent=MS.gene48700.t1 |
| chr4.3 | exon | 68478245 | 68478409 | 68478245 | ID=MS.gene48700.t1.exon3;Parent=MS.gene48700.t1 |
| chr4.3 | CDS | 68478245 | 68478409 | 68478245 | ID=cds.MS.gene48700.t1;Parent=MS.gene48700.t1 |
| chr4.3 | exon | 68478023 | 68478157 | 68478023 | ID=MS.gene48700.t1.exon4;Parent=MS.gene48700.t1 |
| chr4.3 | CDS | 68478023 | 68478157 | 68478023 | ID=cds.MS.gene48700.t1;Parent=MS.gene48700.t1 |
| chr4.3 | exon | 68477589 | 68477792 | 68477589 | ID=MS.gene48700.t1.exon5;Parent=MS.gene48700.t1 |
| chr4.3 | CDS | 68477589 | 68477792 | 68477589 | ID=cds.MS.gene48700.t1;Parent=MS.gene48700.t1 |
| Gene Sequence |
| Protein sequence |
