Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48743.t1 | RHN59482.1 | 97 | 810 | 24 | 0 | 1 | 810 | 1 | 810 | 0.00E+00 | 1607.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48743.t1 | Q9C5X8 | 62.3 | 822 | 289 | 8 | 4 | 810 | 2 | 817 | 2.8e-300 | 1032.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48743.t1 | A0A396I1H9 | 97.0 | 810 | 24 | 0 | 1 | 810 | 1 | 810 | 0.0e+00 | 1607.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052674 | MS.gene48743 | 0.817003 | 4.13E-52 | -1.69E-46 |
| MS.gene052675 | MS.gene48743 | 0.812796 | 3.54E-51 | -1.69E-46 |
| MS.gene052677 | MS.gene48743 | 0.817899 | 2.60E-52 | -1.69E-46 |
| MS.gene054479 | MS.gene48743 | 0.82954 | 4.86E-55 | -1.69E-46 |
| MS.gene055701 | MS.gene48743 | 0.802166 | 6.38E-49 | -1.69E-46 |
| MS.gene058081 | MS.gene48743 | 0.802947 | 4.41E-49 | -1.69E-46 |
| MS.gene060777 | MS.gene48743 | 0.817294 | 3.55E-52 | -1.69E-46 |
| MS.gene060850 | MS.gene48743 | 0.801403 | 9.16E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48743.t1 | MTR_4g030930 | 94.987 | 758 | 22 | 1 | 53 | 810 | 1 | 742 | 0.0 | 1488 |
| MS.gene48743.t1 | MTR_2g035480 | 28.938 | 273 | 160 | 9 | 518 | 780 | 14 | 262 | 1.35e-23 | 102 |
| MS.gene48743.t1 | MTR_2g035470 | 25.733 | 307 | 187 | 9 | 521 | 808 | 22 | 306 | 3.80e-22 | 98.6 |
| MS.gene48743.t1 | MTR_2g035460 | 27.586 | 261 | 157 | 9 | 523 | 773 | 28 | 266 | 5.43e-20 | 92.4 |
| MS.gene48743.t1 | MTR_8g079020 | 25.076 | 327 | 200 | 12 | 16 | 322 | 124 | 425 | 3.12e-16 | 84.0 |
| MS.gene48743.t1 | MTR_2g035480 | 33.333 | 156 | 84 | 5 | 625 | 780 | 33 | 168 | 1.67e-14 | 73.9 |
| MS.gene48743.t1 | MTR_2g035470 | 27.979 | 193 | 112 | 5 | 625 | 808 | 39 | 213 | 2.78e-14 | 73.6 |
| MS.gene48743.t1 | MTR_2g035460 | 32.215 | 149 | 83 | 4 | 625 | 773 | 81 | 211 | 1.38e-12 | 69.3 |
| MS.gene48743.t1 | MTR_1g101790 | 23.926 | 326 | 188 | 10 | 5 | 296 | 70 | 369 | 3.46e-12 | 70.5 |
| MS.gene48743.t1 | MTR_1g101790 | 23.926 | 326 | 188 | 10 | 5 | 296 | 70 | 369 | 3.95e-12 | 70.5 |
| MS.gene48743.t1 | MTR_2g035480 | 36.937 | 111 | 55 | 3 | 670 | 780 | 45 | 140 | 2.75e-11 | 63.9 |
| MS.gene48743.t1 | MTR_6g089580 | 23.824 | 319 | 180 | 11 | 4 | 290 | 71 | 358 | 3.64e-11 | 67.0 |
| MS.gene48743.t1 | MTR_6g464840 | 23.824 | 319 | 180 | 11 | 4 | 290 | 71 | 358 | 4.07e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48743.t1 | AT1G16540 | 62.409 | 822 | 288 | 9 | 4 | 810 | 2 | 817 | 0.0 | 1046 |
| MS.gene48743.t1 | AT1G16540 | 61.065 | 845 | 285 | 11 | 4 | 810 | 2 | 840 | 0.0 | 1037 |
| MS.gene48743.t1 | AT1G16540 | 63.508 | 707 | 238 | 7 | 4 | 693 | 2 | 705 | 0.0 | 913 |
| MS.gene48743.t1 | AT1G30910 | 26.855 | 283 | 167 | 9 | 518 | 782 | 21 | 281 | 2.57e-22 | 99.4 |
| MS.gene48743.t1 | AT5G44720 | 22.258 | 310 | 199 | 9 | 518 | 807 | 7 | 294 | 1.55e-18 | 87.8 |
| MS.gene48743.t1 | AT5G51920 | 23.866 | 507 | 306 | 18 | 15 | 488 | 82 | 541 | 2.04e-16 | 84.0 |
| MS.gene48743.t1 | AT5G44720 | 23.045 | 243 | 156 | 6 | 518 | 750 | 7 | 228 | 8.04e-16 | 78.2 |
| MS.gene48743.t1 | AT4G37100 | 24.830 | 294 | 176 | 12 | 5 | 282 | 117 | 381 | 1.35e-14 | 78.6 |
| MS.gene48743.t1 | AT2G23520 | 24.306 | 288 | 183 | 11 | 5 | 282 | 115 | 377 | 4.09e-13 | 73.9 |
Find 182 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCTTACTACTAACGTTTA+TGG | 0.134726 | 4.4:-72785456 | MS.gene48743:CDS |
| CTGAAATATGCATCTGTTAA+TGG | 0.191189 | 4.4:-72772752 | MS.gene48743:CDS |
| GAAAAGCTGGCATCTCTTTC+AGG | 0.193863 | 4.4:-72778654 | MS.gene48743:CDS |
| CCCTCAGAGTGCAATTTCTC+TGG | 0.208953 | 4.4:-72782809 | MS.gene48743:CDS |
| CTATGGACGCCATAATTTAA+TGG | 0.234039 | 4.4:-72779281 | MS.gene48743:intron |
| TCGAATTTGATCAATAGTTT+TGG | 0.255962 | 4.4:+72785663 | None:intergenic |
| TTCTTTCAGAAATTCTTCTT+TGG | 0.266852 | 4.4:+72785717 | None:intergenic |
| GCAAAGAAAGATTGCAAATC+AGG | 0.268541 | 4.4:-72775419 | MS.gene48743:CDS |
| TGTACTTTGTTACGATATTC+TGG | 0.273265 | 4.4:-72774675 | MS.gene48743:CDS |
| CGTCCCAACCTTGTGGTATC+TGG | 0.284259 | 4.4:-72773407 | MS.gene48743:CDS |
| GAGCTTATAAGTCCCATTTC+AGG | 0.285735 | 4.4:+72775489 | None:intergenic |
| TGAAAAGACCAGATGGTTCT+TGG | 0.309908 | 4.4:-72778695 | MS.gene48743:CDS |
| GTATACAAGGAAAACGCTTT+TGG | 0.333766 | 4.4:-72779341 | MS.gene48743:CDS |
| TTTGGCTATCCGACTGGGCT+TGG | 0.336077 | 4.4:-72781774 | MS.gene48743:CDS |
| TGGTGCAGTGATATCTTTGT+AGG | 0.339073 | 4.4:+72782976 | None:intergenic |
| AATATACATTTGTAGTCTTC+GGG | 0.347210 | 4.4:+72783699 | None:intergenic |
| ACAGACTAACCATTAAATTA+TGG | 0.348745 | 4.4:+72779272 | None:intergenic |
| GAGAAAAGTGGCTGGATTGC+AGG | 0.349035 | 4.4:-72782944 | MS.gene48743:CDS |
| TTATACAGATCTTGTTTACT+TGG | 0.351988 | 4.4:-72785532 | MS.gene48743:intron |
| TTTAGGCTGGCCACGTTTGT+TGG | 0.352191 | 4.4:-72778359 | MS.gene48743:intron |
| AAATATACATTTGTAGTCTT+CGG | 0.354887 | 4.4:+72783698 | None:intergenic |
| GAGAATCATAACAGTGTTCT+TGG | 0.355867 | 4.4:-72783594 | MS.gene48743:CDS |
| TAGATCCATTGCCATGCCTT+AGG | 0.357654 | 4.4:+72779317 | None:intergenic |
| GAAGAATTTCTGAAAGAATT+CGG | 0.360768 | 4.4:-72785712 | MS.gene48743:CDS |
| TGGGATGACCAAGATATAAT+TGG | 0.365162 | 4.4:-72778339 | MS.gene48743:CDS |
| GTGAAATTCTTACACTGAAA+AGG | 0.368899 | 4.4:-72776468 | MS.gene48743:CDS |
| TATACAGGACATTGAACTTC+AGG | 0.376705 | 4.4:-72775370 | MS.gene48743:CDS |
| GCTTTCCACCAATTATATCT+TGG | 0.380566 | 4.4:+72778331 | None:intergenic |
| CTCAAAATCACGTTGACAAC+GGG | 0.381085 | 4.4:-72778001 | MS.gene48743:CDS |
| GAAGACTCAAGCAAGATCTT+AGG | 0.383407 | 4.4:-72782749 | MS.gene48743:CDS |
| CCAGGAAACGTGTTACGAAA+TGG | 0.387437 | 4.4:-72778739 | MS.gene48743:intron |
| CAGCTGTTTGGCTATCCGAC+TGG | 0.392256 | 4.4:-72781780 | MS.gene48743:CDS |
| AAGATAGATGGAGTGGCATT+AGG | 0.394878 | 4.4:-72773367 | MS.gene48743:CDS |
| CTTGCCCAGCATTTAGTGTA+AGG | 0.395500 | 4.4:+72772941 | None:intergenic |
| AATCAGGGAAGGATATTGTT+TGG | 0.401166 | 4.4:-72772782 | MS.gene48743:intron |
| AGCAGCAACAGGGTGATTCC+TGG | 0.406868 | 4.4:-72772727 | MS.gene48743:CDS |
| AATCTCGTGAGTTGCAGAAC+TGG | 0.406970 | 4.4:+72784327 | None:intergenic |
| TCCCTGACTGAGGTCAATAA+AGG | 0.411115 | 4.4:+72775467 | None:intergenic |
| GGCAACCGCAGCGTTGAAAC+TGG | 0.411771 | 4.4:-72783667 | MS.gene48743:CDS |
| TCTAGCGTCTGCATCCTCTA+TGG | 0.414712 | 4.4:-72779298 | MS.gene48743:CDS |
| TTAGGCTGGCCACGTTTGTT+GGG | 0.415752 | 4.4:-72778358 | MS.gene48743:intron |
| AAAGAATTCGGCGAACATTA+CGG | 0.419884 | 4.4:-72785700 | MS.gene48743:CDS |
| TGTTAATGGAGAGCAGCAAC+AGG | 0.422489 | 4.4:-72772738 | MS.gene48743:CDS |
| CTCCTTTATTGACCTCAGTC+AGG | 0.423982 | 4.4:-72775469 | MS.gene48743:CDS |
| GGACATGTGTGGAACAGAAA+TGG | 0.433855 | 4.4:-72773450 | MS.gene48743:CDS |
| CATCTCTTGCGCTGTATACA+AGG | 0.436018 | 4.4:-72779354 | MS.gene48743:CDS |
| GGAGCTCTCGTTGTTCGAAA+TGG | 0.436171 | 4.4:-72781753 | MS.gene48743:intron |
| TACAAATGTATATTTACATC+AGG | 0.437063 | 4.4:-72783690 | MS.gene48743:CDS |
| TGTGAGGGATGCCCGCCAAC+AGG | 0.438727 | 4.4:-72784305 | MS.gene48743:intron |
| GCAAAAGTCAAAGGAACCTT+TGG | 0.439318 | 4.4:-72772917 | MS.gene48743:CDS |
| AGCTGTTTGGCTATCCGACT+GGG | 0.442224 | 4.4:-72781779 | MS.gene48743:CDS |
| TATTTACATGCAGGAGTGAA+TGG | 0.442526 | 4.4:-72777492 | MS.gene48743:intron |
| CTCCATCTATCTTCATCATA+AGG | 0.444927 | 4.4:+72773377 | None:intergenic |
| ATAAATTACACACATCAATC+TGG | 0.445249 | 4.4:+72772680 | None:intergenic |
| CAGGAAACGTGTTACGAAAT+GGG | 0.446582 | 4.4:-72778738 | MS.gene48743:CDS |
| AGAAATTCTTCTTTGGCCAT+AGG | 0.449433 | 4.4:+72785724 | None:intergenic |
| ACAGGATACTTCGACAAATC+AGG | 0.450734 | 4.4:+72781911 | None:intergenic |
| TGATTACCATTGTTGCTAAG+AGG | 0.452302 | 4.4:+72777387 | None:intergenic |
| GGCCTTATGATGAAGATAGA+TGG | 0.453912 | 4.4:-72773379 | MS.gene48743:CDS |
| GTCATGACTTTGTGTTAGAT+AGG | 0.454115 | 4.4:-72774647 | MS.gene48743:CDS |
| AGATGGAGTGGCATTAGGAT+TGG | 0.455462 | 4.4:-72773362 | MS.gene48743:CDS |
| TGGCAACTTTAGCATCATAC+AGG | 0.456020 | 4.4:-72772897 | MS.gene48743:CDS |
| ACAGGATGCTTCTGCAATCC+AGG | 0.458382 | 4.4:-72778530 | MS.gene48743:CDS |
| AGATCCATTGCCATGCCTTA+GGG | 0.458955 | 4.4:+72779318 | None:intergenic |
| CTCTTTCAGGAATTCAGCTA+AGG | 0.460527 | 4.4:-72778641 | MS.gene48743:CDS |
| CCTCAGAGTGCAATTTCTCT+GGG | 0.462131 | 4.4:-72782808 | MS.gene48743:CDS |
| ATCAACCTTACACTAAATGC+TGG | 0.473152 | 4.4:-72772946 | MS.gene48743:CDS |
| ATTGAGGAACTCTTTGAAGA+TGG | 0.474528 | 4.4:-72781014 | MS.gene48743:CDS |
| GATGTACATCCTAGAATAGA+AGG | 0.478462 | 4.4:-72783009 | MS.gene48743:CDS |
| ATAAGACTTCTTCAGTAACT+TGG | 0.483353 | 4.4:+72781171 | None:intergenic |
| GCTTGAAACATGATCGTGAA+TGG | 0.484068 | 4.4:-72776510 | MS.gene48743:CDS |
| TGAAATTCTTACACTGAAAA+GGG | 0.485491 | 4.4:-72776467 | MS.gene48743:intron |
| ACCTTGTGGTATCTGGAGGC+AGG | 0.487990 | 4.4:-72773400 | MS.gene48743:CDS |
| ACATTGATTTCATTAAAAGA+AGG | 0.488596 | 4.4:-72781043 | MS.gene48743:CDS |
| AGACCAGATGGTTCTTGGTA+TGG | 0.489846 | 4.4:-72778690 | MS.gene48743:CDS |
| TGAGATAATAACAAGTATCA+TGG | 0.493249 | 4.4:+72777466 | None:intergenic |
| TTCCTGGCTTCATGTGGGGC+AGG | 0.494280 | 4.4:-72772711 | MS.gene48743:CDS |
| TAGGTCAGAAACACTTTCCT+CGG | 0.494992 | 4.4:+72774548 | None:intergenic |
| CTTGTTTACTTGGATCATGC+TGG | 0.495576 | 4.4:-72785522 | MS.gene48743:CDS |
| GGGTGATTCCTGGCTTCATG+TGG | 0.497231 | 4.4:-72772717 | MS.gene48743:CDS |
| GAAAGTGCAACAAAATCTAC+AGG | 0.502335 | 4.4:+72781893 | None:intergenic |
| GCATGGTTTACTAAGGCCAT+TGG | 0.503586 | 4.4:-72774705 | MS.gene48743:CDS |
| TTCCTGCCCCACATGAAGCC+AGG | 0.507560 | 4.4:+72772709 | None:intergenic |
| TAAAAGAAGGGAAGGTATTG+AGG | 0.507599 | 4.4:-72781030 | MS.gene48743:CDS |
| CCTCCAGATACCACAAGGTT+GGG | 0.509304 | 4.4:+72773404 | None:intergenic |
| ATCTAACACAAAGTCATGAC+TGG | 0.513044 | 4.4:+72774650 | None:intergenic |
| ACTAGTATTAGATATGCTCT+TGG | 0.513911 | 4.4:-72783066 | MS.gene48743:intron |
| AACTGATTCCATCTGAAGCT+CGG | 0.513959 | 4.4:+72785485 | None:intergenic |
| CATTGATTTCATTAAAAGAA+GGG | 0.519231 | 4.4:-72781042 | MS.gene48743:CDS |
| GGTGATTCCTGGCTTCATGT+GGG | 0.527569 | 4.4:-72772716 | MS.gene48743:CDS |
| GGCATCGATTACATCCTCCT+AGG | 0.528194 | 4.4:+72772974 | None:intergenic |
| GCCTCCAGATACCACAAGGT+TGG | 0.529332 | 4.4:+72773403 | None:intergenic |
| TTAGTGTAAGGTTGATTACC+TGG | 0.529571 | 4.4:+72772953 | None:intergenic |
| TCCTTTATTGACCTCAGTCA+GGG | 0.531918 | 4.4:-72775468 | MS.gene48743:CDS |
| TTTATACTCCGAGCTTCAGA+TGG | 0.532352 | 4.4:-72785493 | MS.gene48743:CDS |
| GAGGCTTCAGTGCAAGTAGT+TGG | 0.533542 | 4.4:-72777410 | MS.gene48743:CDS |
| ATTTGCATGTACCTGTTGGC+GGG | 0.533634 | 4.4:+72784294 | None:intergenic |
| GTTATTCTTAGATGTTCAGA+AGG | 0.536527 | 4.4:-72773471 | MS.gene48743:intron |
| ATTGCAGGAGGGAGAGCCAA+TGG | 0.537529 | 4.4:-72782929 | MS.gene48743:CDS |
| ATACCTTGGCTTGTCGCACA+TGG | 0.538887 | 4.4:-72778495 | MS.gene48743:CDS |
| GATGACCAAGATATAATTGG+TGG | 0.540194 | 4.4:-72778336 | MS.gene48743:CDS |
| GTGTAAGAATTTCACCACTC+AGG | 0.540972 | 4.4:+72776476 | None:intergenic |
| GGTGCTGTAAGAGTATCCTT+TGG | 0.543012 | 4.4:-72778303 | MS.gene48743:CDS |
| GAAATTGCACTCTGAGGGAA+AGG | 0.545949 | 4.4:+72782814 | None:intergenic |
| AAATTACTGTTACAACTCCA+TGG | 0.546785 | 4.4:+72783630 | None:intergenic |
| TTAAATTATGGCGTCCATAG+AGG | 0.547424 | 4.4:+72779284 | None:intergenic |
| ATTAGATATGCTCTTGGTCA+AGG | 0.547982 | 4.4:-72783060 | MS.gene48743:intron |
| GGCCTTAGTAAACCATGCAT+TGG | 0.548195 | 4.4:+72774710 | None:intergenic |
| GACCAATGCATGGTTTACTA+AGG | 0.548587 | 4.4:-72774712 | MS.gene48743:CDS |
| TTGCAGAACTGGAATCACTT+TGG | 0.550061 | 4.4:+72784338 | None:intergenic |
| CCAGAGAAATTGCACTCTGA+GGG | 0.550408 | 4.4:+72782809 | None:intergenic |
| TATCCATACCAAGAACCATC+TGG | 0.553030 | 4.4:+72778687 | None:intergenic |
| AGCATCATACAGGAGAGTAA+AGG | 0.553546 | 4.4:-72772887 | MS.gene48743:intron |
| ATACAGGACATTGAACTTCA+GGG | 0.554981 | 4.4:-72775369 | MS.gene48743:CDS |
| ACCGCAGCGTTGAAACTGGT+TGG | 0.555246 | 4.4:-72783663 | MS.gene48743:CDS |
| TTGCAGGAGGGAGAGCCAAT+GGG | 0.558965 | 4.4:-72782928 | MS.gene48743:intron |
| TATTTGCATGTACCTGTTGG+CGG | 0.559700 | 4.4:+72784293 | None:intergenic |
| TTGGCCCTAAGGCATGGCAA+TGG | 0.560112 | 4.4:-72779322 | MS.gene48743:CDS |
| TAACTGTGTCAGCTATATCA+AGG | 0.561304 | 4.4:-72780932 | MS.gene48743:intron |
| GAACAAAGGAGAAAAGTGGC+TGG | 0.565540 | 4.4:-72782952 | MS.gene48743:CDS |
| ACTGAATTCAACAGATTACA+AGG | 0.566431 | 4.4:-72785637 | MS.gene48743:intron |
| CTAAACAAAAGATTACGTTC+AGG | 0.566844 | 4.4:-72774528 | MS.gene48743:intron |
| CTGCAACTCACGAGATTGTG+AGG | 0.567395 | 4.4:-72784321 | MS.gene48743:CDS |
| GATTTCATTAAAAGAAGGGA+AGG | 0.568147 | 4.4:-72781038 | MS.gene48743:CDS |
| GTCAACATTTGAAGATGCCA+AGG | 0.570191 | 4.4:-72778274 | MS.gene48743:intron |
| GTGATTCCTGGCTTCATGTG+GGG | 0.572439 | 4.4:-72772715 | MS.gene48743:CDS |
| ATACCGTGAAGTGGAAAAGC+TGG | 0.572895 | 4.4:-72778667 | MS.gene48743:CDS |
| TCAACCTTACACTAAATGCT+GGG | 0.573423 | 4.4:-72772945 | MS.gene48743:CDS |
| AGGAGGATGTAATCGATGCC+AGG | 0.575860 | 4.4:-72772971 | MS.gene48743:CDS |
| AGCATAGCATCTATCCGCCA+TGG | 0.578283 | 4.4:-72780975 | MS.gene48743:CDS |
| TCTTTCAGGAATTCAGCTAA+GGG | 0.579762 | 4.4:-72778640 | MS.gene48743:intron |
| ACTTGCACTGAAGCCTCCAC+AGG | 0.581552 | 4.4:+72777416 | None:intergenic |
| TTCAACTTGAAAAGACCAGA+TGG | 0.586403 | 4.4:-72778702 | MS.gene48743:CDS |
| GATCCATGTGCGACAAGCCA+AGG | 0.588503 | 4.4:+72778492 | None:intergenic |
| TGCAATCTTTCTTTGCAATG+TGG | 0.588832 | 4.4:+72775426 | None:intergenic |
| ACAAATGTATATTTACATCA+GGG | 0.592954 | 4.4:-72783689 | MS.gene48743:CDS |
| AGCGTTGAAACTGGTTGGAG+AGG | 0.593370 | 4.4:-72783658 | MS.gene48743:CDS |
| CCCAACCTTGTGGTATCTGG+AGG | 0.593502 | 4.4:-72773404 | MS.gene48743:CDS |
| ATAATTGGTGGAAAGCCTAT+CGG | 0.596711 | 4.4:-72778324 | MS.gene48743:CDS |
| GTTAAGATTCGACCTTGACA+TGG | 0.597086 | 4.4:-72782786 | MS.gene48743:CDS |
| CCAAGAACAAAGGAGAAAAG+TGG | 0.599097 | 4.4:-72782956 | MS.gene48743:CDS |
| GGTGCATGTGCAAAATACCT+TGG | 0.599650 | 4.4:-72778509 | MS.gene48743:CDS |
| GACAACGGGAATCAATTGAA+AGG | 0.600191 | 4.4:-72777987 | MS.gene48743:intron |
| TCCAACCAGTTTCAACGCTG+CGG | 0.602570 | 4.4:+72783662 | None:intergenic |
| CTTCGACAAATCAGGTGGCA+TGG | 0.603262 | 4.4:+72781919 | None:intergenic |
| ATCTTCAATATCTACCGCAA+TGG | 0.603697 | 4.4:+72783029 | None:intergenic |
| TGATAATCTTCGCCATGTCA+AGG | 0.605139 | 4.4:+72782774 | None:intergenic |
| ACATTGAACTTCAGGGTCAG+AGG | 0.606014 | 4.4:-72775362 | MS.gene48743:intron |
| TTGGTATGGATACCGTGAAG+TGG | 0.607124 | 4.4:-72778676 | MS.gene48743:CDS |
| GATACTCTTACAGCACCGAT+AGG | 0.608780 | 4.4:+72778309 | None:intergenic |
| AAATGTTGACATGTAGCCAA+AGG | 0.610458 | 4.4:+72778287 | None:intergenic |
| GCATCGATTACATCCTCCTA+GGG | 0.610987 | 4.4:+72772975 | None:intergenic |
| TGACATGGCGAAGATTATCA+AGG | 0.612519 | 4.4:-72782771 | MS.gene48743:CDS |
| GAATATCGTAACAAAGTACA+AGG | 0.614062 | 4.4:+72774678 | None:intergenic |
| CCTCAAAATCACGTTGACAA+CGG | 0.614324 | 4.4:-72778002 | MS.gene48743:CDS |
| AGTTGGCCTCTTAGCAACAA+TGG | 0.615065 | 4.4:-72777393 | MS.gene48743:intron |
| TTTATACCCCAGTCCCTAGG+AGG | 0.618751 | 4.4:-72772988 | MS.gene48743:intron |
| TGGGCAAGTGCAAAAGTCAA+AGG | 0.621865 | 4.4:-72772926 | MS.gene48743:CDS |
| AAAAGTGGCTGGATTGCAGG+AGG | 0.622864 | 4.4:-72782941 | MS.gene48743:CDS |
| CCCAGAGAAATTGCACTCTG+AGG | 0.623083 | 4.4:+72782808 | None:intergenic |
| TAGATTTCGTCCCAACCTTG+TGG | 0.624280 | 4.4:-72773414 | MS.gene48743:CDS |
| GGTTCATAAGAAAAGGACGA+TGG | 0.631652 | 4.4:-72781976 | MS.gene48743:intron |
| TATGATGAAGATAGATGGAG+TGG | 0.632993 | 4.4:-72773374 | MS.gene48743:CDS |
| TATCACTGCACCAAGAACAA+AGG | 0.632993 | 4.4:-72782966 | MS.gene48743:CDS |
| CTTGGTCATCCCAACAAACG+TGG | 0.645556 | 4.4:+72778349 | None:intergenic |
| TATGATGCTAAAGTTGCCAA+AGG | 0.647940 | 4.4:+72772901 | None:intergenic |
| CAAAGTACAAGGTCTTCCAA+TGG | 0.650161 | 4.4:+72774689 | None:intergenic |
| GATGTTCAGAAGGACATGTG+TGG | 0.651199 | 4.4:-72773461 | MS.gene48743:CDS |
| CAAATGTATATTTACATCAG+GGG | 0.653742 | 4.4:-72783688 | MS.gene48743:CDS |
| GGATCTCATTTCAAATACTG+AGG | 0.657087 | 4.4:-72778474 | MS.gene48743:intron |
| TCAAGGAGCTGCAGCCATTG+CGG | 0.658687 | 4.4:-72783043 | MS.gene48743:CDS |
| AAAGTGGCTGGATTGCAGGA+GGG | 0.661516 | 4.4:-72782940 | MS.gene48743:CDS |
| ACGAGAGCTCCAAGCCCAGT+CGG | 0.664604 | 4.4:+72781765 | None:intergenic |
| GCCTGCCTCCAGATACCACA+AGG | 0.668184 | 4.4:+72773399 | None:intergenic |
| TGCAACTCACGAGATTGTGA+GGG | 0.669939 | 4.4:-72784320 | MS.gene48743:CDS |
| GTTAATGGAGAGCAGCAACA+GGG | 0.673742 | 4.4:-72772737 | MS.gene48743:CDS |
| TATCCGATAAAATCCTGTGG+AGG | 0.683306 | 4.4:-72777429 | MS.gene48743:CDS |
| TGGATTCTCAAAAGCCTGAG+TGG | 0.699548 | 4.4:-72776490 | MS.gene48743:CDS |
| ACGACAATGAGACCAATGCA+TGG | 0.700208 | 4.4:-72774722 | MS.gene48743:CDS |
| CGAACAACATTCCCTGACTG+AGG | 0.701530 | 4.4:+72775457 | None:intergenic |
| GTATATCCGATAAAATCCTG+TGG | 0.701800 | 4.4:-72777432 | MS.gene48743:CDS |
| GGATACTTCGACAAATCAGG+TGG | 0.705819 | 4.4:+72781914 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 72772694 | 72785743 | 72772694 | ID=MS.gene48743 |
| chr4.4 | mRNA | 72772694 | 72785743 | 72772694 | ID=MS.gene48743.t1;Parent=MS.gene48743 |
| chr4.4 | exon | 72785638 | 72785743 | 72785638 | ID=MS.gene48743.t1.exon1;Parent=MS.gene48743.t1 |
| chr4.4 | CDS | 72785638 | 72785743 | 72785638 | ID=cds.MS.gene48743.t1;Parent=MS.gene48743.t1 |
| chr4.4 | exon | 72785448 | 72785546 | 72785448 | ID=MS.gene48743.t1.exon2;Parent=MS.gene48743.t1 |
| chr4.4 | CDS | 72785448 | 72785546 | 72785448 | ID=cds.MS.gene48743.t1;Parent=MS.gene48743.t1 |
| chr4.4 | exon | 72784306 | 72784364 | 72784306 | ID=MS.gene48743.t1.exon3;Parent=MS.gene48743.t1 |
| chr4.4 | CDS | 72784306 | 72784364 | 72784306 | ID=cds.MS.gene48743.t1;Parent=MS.gene48743.t1 |
| chr4.4 | exon | 72783585 | 72783745 | 72783585 | ID=MS.gene48743.t1.exon4;Parent=MS.gene48743.t1 |
| chr4.4 | CDS | 72783585 | 72783745 | 72783585 | ID=cds.MS.gene48743.t1;Parent=MS.gene48743.t1 |
| chr4.4 | exon | 72782929 | 72783077 | 72782929 | ID=MS.gene48743.t1.exon5;Parent=MS.gene48743.t1 |
| chr4.4 | CDS | 72782929 | 72783077 | 72782929 | ID=cds.MS.gene48743.t1;Parent=MS.gene48743.t1 |
| chr4.4 | exon | 72782734 | 72782857 | 72782734 | ID=MS.gene48743.t1.exon6;Parent=MS.gene48743.t1 |
| chr4.4 | CDS | 72782734 | 72782857 | 72782734 | ID=cds.MS.gene48743.t1;Parent=MS.gene48743.t1 |
| chr4.4 | exon | 72781883 | 72781988 | 72781883 | ID=MS.gene48743.t1.exon7;Parent=MS.gene48743.t1 |
| chr4.4 | CDS | 72781883 | 72781988 | 72781883 | ID=cds.MS.gene48743.t1;Parent=MS.gene48743.t1 |
| chr4.4 | exon | 72781754 | 72781799 | 72781754 | ID=MS.gene48743.t1.exon8;Parent=MS.gene48743.t1 |
| chr4.4 | CDS | 72781754 | 72781799 | 72781754 | ID=cds.MS.gene48743.t1;Parent=MS.gene48743.t1 |
| chr4.4 | exon | 72781161 | 72781199 | 72781161 | ID=MS.gene48743.t1.exon9;Parent=MS.gene48743.t1 |
| chr4.4 | CDS | 72781161 | 72781199 | 72781161 | ID=cds.MS.gene48743.t1;Parent=MS.gene48743.t1 |
| chr4.4 | exon | 72780933 | 72781089 | 72780933 | ID=MS.gene48743.t1.exon10;Parent=MS.gene48743.t1 |
| chr4.4 | CDS | 72780933 | 72781089 | 72780933 | ID=cds.MS.gene48743.t1;Parent=MS.gene48743.t1 |
| chr4.4 | exon | 72779282 | 72779384 | 72779282 | ID=MS.gene48743.t1.exon11;Parent=MS.gene48743.t1 |
| chr4.4 | CDS | 72779282 | 72779384 | 72779282 | ID=cds.MS.gene48743.t1;Parent=MS.gene48743.t1 |
| chr4.4 | exon | 72778641 | 72778757 | 72778641 | ID=MS.gene48743.t1.exon12;Parent=MS.gene48743.t1 |
| chr4.4 | CDS | 72778641 | 72778757 | 72778641 | ID=cds.MS.gene48743.t1;Parent=MS.gene48743.t1 |
| chr4.4 | exon | 72778475 | 72778552 | 72778475 | ID=MS.gene48743.t1.exon13;Parent=MS.gene48743.t1 |
| chr4.4 | CDS | 72778475 | 72778552 | 72778475 | ID=cds.MS.gene48743.t1;Parent=MS.gene48743.t1 |
| chr4.4 | exon | 72778275 | 72778376 | 72778275 | ID=MS.gene48743.t1.exon14;Parent=MS.gene48743.t1 |
| chr4.4 | CDS | 72778275 | 72778376 | 72778275 | ID=cds.MS.gene48743.t1;Parent=MS.gene48743.t1 |
| chr4.4 | exon | 72777988 | 72778060 | 72777988 | ID=MS.gene48743.t1.exon15;Parent=MS.gene48743.t1 |
| chr4.4 | CDS | 72777988 | 72778060 | 72777988 | ID=cds.MS.gene48743.t1;Parent=MS.gene48743.t1 |
| chr4.4 | exon | 72777394 | 72777501 | 72777394 | ID=MS.gene48743.t1.exon16;Parent=MS.gene48743.t1 |
| chr4.4 | CDS | 72777394 | 72777501 | 72777394 | ID=cds.MS.gene48743.t1;Parent=MS.gene48743.t1 |
| chr4.4 | exon | 72776468 | 72776535 | 72776468 | ID=MS.gene48743.t1.exon17;Parent=MS.gene48743.t1 |
| chr4.4 | CDS | 72776468 | 72776535 | 72776468 | ID=cds.MS.gene48743.t1;Parent=MS.gene48743.t1 |
| chr4.4 | exon | 72775363 | 72775514 | 72775363 | ID=MS.gene48743.t1.exon18;Parent=MS.gene48743.t1 |
| chr4.4 | CDS | 72775363 | 72775514 | 72775363 | ID=cds.MS.gene48743.t1;Parent=MS.gene48743.t1 |
| chr4.4 | exon | 72774529 | 72774761 | 72774529 | ID=MS.gene48743.t1.exon19;Parent=MS.gene48743.t1 |
| chr4.4 | CDS | 72774529 | 72774761 | 72774529 | ID=cds.MS.gene48743.t1;Parent=MS.gene48743.t1 |
| chr4.4 | exon | 72773346 | 72773482 | 72773346 | ID=MS.gene48743.t1.exon20;Parent=MS.gene48743.t1 |
| chr4.4 | CDS | 72773346 | 72773482 | 72773346 | ID=cds.MS.gene48743.t1;Parent=MS.gene48743.t1 |
| chr4.4 | exon | 72772888 | 72772998 | 72772888 | ID=MS.gene48743.t1.exon21;Parent=MS.gene48743.t1 |
| chr4.4 | CDS | 72772888 | 72772998 | 72772888 | ID=cds.MS.gene48743.t1;Parent=MS.gene48743.t1 |
| chr4.4 | exon | 72772694 | 72772798 | 72772694 | ID=MS.gene48743.t1.exon22;Parent=MS.gene48743.t1 |
| chr4.4 | CDS | 72772694 | 72772798 | 72772694 | ID=cds.MS.gene48743.t1;Parent=MS.gene48743.t1 |
| Gene Sequence |
| Protein sequence |
