AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052677


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052677.t1 MTR_8g105260 96.296 540 5 2 1 527 1 538 0.0 1060
MS.gene052677.t1 MTR_1g032100 75.416 541 109 5 1 527 1 531 0.0 837
MS.gene052677.t1 MTR_4g062100 45.233 451 220 6 56 483 61 507 5.82e-123 372
MS.gene052677.t1 MTR_7g117620 43.265 490 245 9 56 527 72 546 2.07e-121 367
MS.gene052677.t1 MTR_7g100390 43.030 495 249 6 54 527 38 520 1.28e-120 365
MS.gene052677.t1 MTR_2g096190 40.113 531 272 8 20 527 37 544 2.64e-120 365
MS.gene052677.t1 MTR_1g115575 40.381 525 280 7 21 527 84 593 4.52e-118 360
MS.gene052677.t1 MTR_7g100430 37.143 525 291 8 21 527 79 582 1.83e-97 307
MS.gene052677.t1 MTR_2g101310 24.717 441 244 10 100 457 138 573 1.70e-33 135
MS.gene052677.t1 MTR_2g101320 22.883 437 251 6 100 455 138 569 1.68e-23 104
MS.gene052677.t1 MTR_3g105650 24.065 428 257 10 102 501 39 426 1.33e-22 100
MS.gene052677.t1 MTR_2g101310 32.967 182 107 3 100 266 138 319 4.39e-22 99.8
MS.gene052677.t1 MTR_1g069110 23.442 337 212 7 97 410 47 360 3.80e-16 81.3
MS.gene052677.t1 MTR_8g068990 23.669 338 202 7 103 409 47 359 4.33e-15 78.2
MS.gene052677.t1 MTR_8g073260 25.517 290 166 8 103 367 46 310 9.00e-14 73.9
MS.gene052677.t1 MTR_5g085830 21.678 429 242 14 104 456 247 657 3.96e-13 72.4
MS.gene052677.t1 MTR_5g085810 23.128 454 283 10 49 456 252 685 4.15e-13 72.4
MS.gene052677.t1 MTR_8g040930 23.684 342 191 10 111 407 2 318 5.60e-13 70.9
MS.gene052677.t1 MTR_8g041240 23.684 342 191 10 111 407 2 318 5.60e-13 70.9
MS.gene052677.t1 MTR_8g039620 24.138 290 173 8 103 367 49 316 1.81e-12 69.7
MS.gene052677.t1 MTR_8g467780 24.252 301 170 9 103 369 46 322 2.39e-12 69.3
MS.gene052677.t1 MTR_7g021090 26.168 214 125 5 103 291 44 249 1.05e-11 67.4
MS.gene052677.t1 MTR_1g059930 25.517 290 166 9 103 367 47 311 1.38e-11 67.0
MS.gene052677.t1 MTR_8g072510 25.234 214 127 5 103 291 45 250 3.84e-11 65.5
MS.gene052677.t1 MTR_5g043640 29.648 199 112 5 66 261 20 193 4.84e-11 63.5
MS.gene052677.t1 MTR_7g099570 25.352 213 134 5 103 291 44 255 5.95e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052677.t1 AT2G01680 68.022 541 150 6 1 527 1 532 0.0 723
MS.gene052677.t1 AT1G07710 44.246 504 250 9 47 527 48 543 1.50e-122 370
MS.gene052677.t1 AT1G07710 44.246 504 250 9 47 527 48 543 1.50e-122 370
MS.gene052677.t1 AT2G31820 43.813 493 250 8 54 527 178 662 1.10e-118 364
MS.gene052677.t1 AT5G60070 42.218 514 252 10 14 502 36 529 3.40e-117 357
MS.gene052677.t1 AT1G05640 43.838 495 248 9 54 527 142 627 2.01e-115 355
MS.gene052677.t1 AT5G02620 41.286 482 241 6 24 479 27 492 4.52e-111 340
MS.gene052677.t1 AT5G02620 41.286 482 241 6 24 479 27 492 4.52e-111 340
MS.gene052677.t1 AT5G02620 41.286 482 241 6 24 479 27 492 4.52e-111 340
MS.gene052677.t1 AT3G12360 39.464 522 285 7 21 527 73 578 6.97e-111 342
MS.gene052677.t1 AT3G12360 39.464 522 285 7 21 527 85 590 8.68e-111 342
MS.gene052677.t1 AT3G09550 38.889 522 291 9 21 527 99 607 2.28e-106 331
MS.gene052677.t1 AT3G09550 38.889 522 291 9 21 527 99 607 2.28e-106 331
MS.gene052677.t1 AT3G09550 38.889 522 291 9 21 527 106 614 2.29e-106 331
MS.gene052677.t1 AT5G02620 39.604 505 240 7 24 479 27 515 3.48e-106 328
MS.gene052677.t1 AT5G02620 39.604 505 240 7 24 479 27 515 3.48e-106 328
MS.gene052677.t1 AT5G54710 26.694 487 300 13 57 493 94 573 7.38e-37 144
MS.gene052677.t1 AT5G54710 26.694 487 300 13 57 493 139 618 1.13e-36 144
MS.gene052677.t1 AT1G34050 25.510 392 253 9 112 481 162 536 1.89e-32 131
MS.gene052677.t1 AT2G24600 21.429 462 300 10 56 472 96 539 2.78e-29 122
MS.gene052677.t1 AT2G24600 21.429 462 300 10 56 472 96 539 2.78e-29 122
MS.gene052677.t1 AT1G10340 22.093 430 278 11 56 446 96 507 1.62e-25 110
MS.gene052677.t1 AT1G10340 21.637 513 313 15 12 446 2 503 3.01e-24 107
MS.gene052677.t1 AT5G51160 26.197 355 207 9 98 425 45 371 2.18e-22 100
MS.gene052677.t1 AT5G54700 24.267 375 208 12 125 492 22 327 5.28e-21 94.7
MS.gene052677.t1 AT1G03670 23.043 447 288 8 56 479 171 584 2.01e-19 92.0
MS.gene052677.t1 AT4G03500 22.353 425 270 8 62 464 212 598 4.63e-18 88.2
MS.gene052677.t1 AT4G03460 24.149 323 195 6 105 409 205 495 5.51e-18 87.8
MS.gene052677.t1 AT4G03500 21.853 421 277 7 62 464 189 575 6.02e-18 87.8
MS.gene052677.t1 AT4G03500 21.853 421 277 7 62 464 189 575 6.02e-18 87.8
MS.gene052677.t1 AT4G03460 24.149 323 195 6 105 409 237 527 6.23e-18 87.4
MS.gene052677.t1 AT2G24600 22.865 363 223 9 56 379 96 440 3.65e-17 85.1
MS.gene052677.t1 AT2G24600 22.865 363 223 9 56 379 96 440 3.65e-17 85.1
MS.gene052677.t1 AT5G50140 22.799 443 272 13 65 443 27 463 3.95e-17 84.7
MS.gene052677.t1 AT4G10720 24.633 341 208 10 103 416 40 358 1.08e-16 82.8
MS.gene052677.t1 AT4G10720 25.773 291 172 7 103 367 40 312 1.80e-16 82.4
MS.gene052677.t1 AT4G03490 22.321 448 302 12 49 463 118 552 4.62e-16 81.6
MS.gene052677.t1 AT5G54700 31.126 151 100 2 330 476 200 350 4.80e-16 81.3
MS.gene052677.t1 AT4G03490 22.321 448 302 12 49 463 128 562 5.85e-16 81.3
MS.gene052677.t1 AT4G03490 22.779 439 273 10 49 463 108 504 7.30e-16 81.3
MS.gene052677.t1 AT4G03490 22.321 448 302 11 49 463 128 562 8.90e-16 80.9
MS.gene052677.t1 AT4G03490 22.779 439 273 10 49 463 118 514 1.02e-15 80.9
MS.gene052677.t1 AT5G15500 24.090 357 227 9 67 411 40 364 7.53e-15 77.4
MS.gene052677.t1 AT5G54610 24.555 281 169 7 103 359 40 301 2.65e-13 72.4
MS.gene052677.t1 AT4G14390 21.778 450 282 10 13 459 251 633 5.49e-12 68.9
MS.gene052677.t1 AT4G14390 21.778 450 282 10 13 459 232 614 5.78e-12 68.9
MS.gene052677.t1 AT5G54620 27.419 186 110 5 103 263 40 225 1.81e-11 66.6
MS.gene052677.t1 AT4G14390 21.854 453 279 12 13 459 251 634 1.99e-11 67.0
MS.gene052677.t1 AT3G04140 28.409 176 116 2 92 263 217 386 6.17e-11 65.5
MS.gene052677.t1 AT1G14480 26.754 228 140 5 103 303 40 267 9.98e-11 64.3

Find 98 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATGTGGTAAATGCTATTT+TGG 0.194879 4.1:-1709154 MS.gene052677:CDS
AAAACTCGCCGACGAGTTTC+CGG 0.220434 4.1:-1707965 MS.gene052677:CDS
CATATTCTGAAAGTGCTTCT+TGG 0.231591 4.1:+1708095 None:intergenic
GCTATTACCATAACTGGTTT+AGG 0.239123 4.1:-1707557 MS.gene052677:CDS
TTTCGCCTCAATAGCATTCT+TGG 0.274513 4.1:-1707864 MS.gene052677:CDS
CAAGAAGCACTTTCAGAATA+TGG 0.283596 4.1:-1708094 MS.gene052677:CDS
TTGGACTGCGGCAGCATATA+GGG 0.294971 4.1:+1709185 None:intergenic
AACCACTGTGAGAGAGTTAA+TGG 0.303008 4.1:+1707895 None:intergenic
TGGATGGCTATTACCATAAC+TGG 0.303698 4.1:-1707563 MS.gene052677:CDS
CTATTACCATAACTGGTTTA+GGG 0.304499 4.1:-1707556 MS.gene052677:CDS
ATCACATAATTTGATCAAAA+AGG 0.308077 4.1:+1709806 None:intergenic
TGTTTCTTGTTGCTTATTGA+TGG 0.315784 4.1:+1708168 None:intergenic
CTTGGCTATATTCAATTTGC+CGG 0.319423 4.1:-1707846 MS.gene052677:CDS
CTTGGACTGCGGCAGCATAT+AGG 0.333630 4.1:+1709184 None:intergenic
ACAAGAAACAGCCTTGGATT+TGG 0.348845 4.1:-1708155 MS.gene052677:CDS
TTCAAATCACTTTGGTAGCT+TGG 0.363305 4.1:-1707703 MS.gene052677:CDS
TTACCACATCCAAGTGATCT+TGG 0.370317 4.1:+1709166 None:intergenic
CTGCACTACATAACGCTGTT+AGG 0.375628 4.1:-1709086 MS.gene052677:CDS
GTTGGATCTGGAGACCTTGA+TGG 0.415237 4.1:-1709999 MS.gene052677:CDS
TCAAATCACTTTGGTAGCTT+GGG 0.417875 4.1:-1707702 MS.gene052677:CDS
TTTCAATTCCTTAGCTATAC+CGG 0.426970 4.1:+1707946 None:intergenic
AGGTCAAACTGCGCTACATA+TGG 0.431611 4.1:-1708991 MS.gene052677:CDS
TAGGGATACCTATTCTAGTT+GGG 0.436179 4.1:-1707538 MS.gene052677:CDS
TCTCGTTCGTTCAATATAGT+AGG 0.439653 4.1:+1708918 None:intergenic
ACTGTTAGAGAAGCTTAATA+AGG 0.441562 4.1:-1709967 MS.gene052677:CDS
ATATTCACCACAGTTGGATC+TGG 0.453733 4.1:-1710011 MS.gene052677:CDS
TTAGGGATACCTATTCTAGT+TGG 0.455818 4.1:-1707539 MS.gene052677:CDS
TGCGTCTCTGCGAATCACTT+TGG 0.457508 4.1:+1707465 None:intergenic
GAAGATGGTGATAGAAGTAA+TGG 0.458453 4.1:-1709942 MS.gene052677:CDS
AGGTATCCCTAAACCAGTTA+TGG 0.460403 4.1:+1707550 None:intergenic
GCAGCTAAGCGTGGCCATCT+TGG 0.468196 4.1:-1709732 MS.gene052677:intron
ATTATGAAAGGATCACATAT+AGG 0.475016 4.1:-1707815 MS.gene052677:CDS
AAGCTTAATAAGGAAGAAGA+TGG 0.476184 4.1:-1709957 MS.gene052677:CDS
ATTGAACGAACGAGATAAGA+AGG 0.492542 4.1:-1708910 MS.gene052677:CDS
ACAGTTTCTTCAACCCATCA+AGG 0.495729 4.1:+1709985 None:intergenic
TTGGCAGATAAACTGCCATA+TGG 0.504776 4.1:-1708136 MS.gene052677:CDS
AGACGCATCAAGAGAGCAAG+TGG 0.505968 4.1:-1707449 MS.gene052677:CDS
CTTTGGTAGCTTGGGACACA+AGG 0.509015 4.1:-1707694 MS.gene052677:CDS
TCTAAAGCTGACGATCCATA+TGG 0.511646 4.1:+1708121 None:intergenic
CAATCAATATTCACCACAGT+TGG 0.516406 4.1:-1710017 MS.gene052677:CDS
GCCAGAGTCCCAACTAGAAT+AGG 0.516542 4.1:+1707530 None:intergenic
CCGGGTCAATATATTATGAA+AGG 0.520442 4.1:-1707827 MS.gene052677:CDS
TACGCGGAAAGGCCGGTCAC+AGG 0.521929 4.1:-1708865 MS.gene052677:intron
CTTCACATGGCTACGCGGAA+AGG 0.523901 4.1:-1708876 MS.gene052677:CDS
CTACATAACGCTGTTAGGTA+TGG 0.525429 4.1:-1709081 MS.gene052677:CDS
GTCACACAACTTACAAACCT+CGG 0.525962 4.1:+1709224 None:intergenic
CTGTTGTTAACAAGCTAATG+TGG 0.526218 4.1:-1707652 MS.gene052677:CDS
AGAATGCTATTGAGGCGAAA+AGG 0.530984 4.1:+1707867 None:intergenic
AACATCATCTTCATCTATGT+CGG 0.533622 4.1:-1709913 MS.gene052677:CDS
ACATGGCTACGCGGAAAGGC+CGG 0.534860 4.1:-1708872 MS.gene052677:CDS
ACCTATTCTAGTTGGGACTC+TGG 0.537549 4.1:-1707531 MS.gene052677:CDS
ACAGAGTACATCAGTGGTGG+AGG 0.543153 4.1:-1708958 MS.gene052677:CDS
TTGGCTATATTCAATTTGCC+GGG 0.547911 4.1:-1707845 MS.gene052677:CDS
TAAGCAACAAGAAACAGCCT+TGG 0.552301 4.1:-1708161 MS.gene052677:CDS
CAACTTACAAACCTCGGGCC+AGG 0.555562 4.1:+1709230 None:intergenic
TATAGCCAAGAATGCTATTG+AGG 0.559760 4.1:+1707859 None:intergenic
TCTAACATTGCGGATCATGT+TGG 0.560863 4.1:-1707788 MS.gene052677:CDS
GCTAAATATGCAAGACATGT+TGG 0.561894 4.1:-1708070 MS.gene052677:CDS
GTGGAAGCAAATCCTTCTCA+TGG 0.564022 4.1:-1707430 MS.gene052677:CDS
TCACACAACTTACAAACCTC+GGG 0.565097 4.1:+1709225 None:intergenic
TGCGGCAGCATATAGGGGAC+TGG 0.565490 4.1:+1709191 None:intergenic
AAGATGGTGATAGAAGTAAT+GGG 0.566107 4.1:-1709941 MS.gene052677:CDS
ATCCAAGTGATCTTGGACTG+CGG 0.566122 4.1:+1709173 None:intergenic
TTGGATCTGGAGACCTTGAT+GGG 0.566977 4.1:-1709998 MS.gene052677:CDS
TGCCGCAGTCCAAGATCACT+TGG 0.567594 4.1:-1709175 MS.gene052677:CDS
TGTTGTTGTTCAAATCACTT+TGG 0.570912 4.1:-1707711 MS.gene052677:CDS
TGGACTGCGGCAGCATATAG+GGG 0.571980 4.1:+1709186 None:intergenic
CAACTGTGGTGAATATTGAT+TGG 0.577431 4.1:+1710018 None:intergenic
TAGCTATACCGGAAACTCGT+CGG 0.577902 4.1:+1707957 None:intergenic
CAGTTTATCTGCCAAATCCA+AGG 0.577959 4.1:+1708144 None:intergenic
ATGTCTCTTCAAAATGATCA+TGG 0.578765 4.1:-1709879 MS.gene052677:CDS
GCGCTACATATGGCTGTCAA+AGG 0.582666 4.1:-1708981 MS.gene052677:CDS
GAATGAGTTTAACCTGTGAC+CGG 0.583506 4.1:+1708853 None:intergenic
GGGTAATACCGCTCTTCACA+TGG 0.583634 4.1:-1708889 MS.gene052677:CDS
CCTTTCATAATATATTGACC+CGG 0.584046 4.1:+1707827 None:intergenic
TTTCATGTTGCAGCTAAGCG+TGG 0.587939 4.1:-1709741 MS.gene052677:CDS
TTTGCTAAGCTATGCAGCTG+TGG 0.589326 4.1:-1708200 MS.gene052677:CDS
GCTGCTTGTGCTTGCACGTG+CGG 0.591233 4.1:-1707629 MS.gene052677:CDS
ACGAGTTTCCGGTATAGCTA+AGG 0.593408 4.1:-1707954 MS.gene052677:CDS
CTGTGGTGAATATTGATTGG+TGG 0.599501 4.1:+1710021 None:intergenic
AGCTGCACACAATAATCTCA+AGG 0.604525 4.1:-1709838 MS.gene052677:CDS
AGTCCAAGATCACTTGGATG+TGG 0.606081 4.1:-1709169 MS.gene052677:CDS
TGGTAAAGTAGATGAAGCCA+TGG 0.615814 4.1:-1708050 MS.gene052677:CDS
CCGCTCTTCACATGGCTACG+CGG 0.621597 4.1:-1708881 MS.gene052677:CDS
TTGAACGAACGAGATAAGAA+GGG 0.622382 4.1:-1708909 MS.gene052677:CDS
TGTGGTGAATATTGATTGGT+GGG 0.623793 4.1:+1710022 None:intergenic
TTGTGTGCAGCTATGTAAAG+TGG 0.624900 4.1:+1709849 None:intergenic
GAATAAGTAGAATACCAAGA+TGG 0.625558 4.1:+1709718 None:intergenic
TGTTGTTAACAAGCTAATGT+GGG 0.633610 4.1:-1707651 MS.gene052677:CDS
TGCAGAGTAAGACCATGAGA+AGG 0.634865 4.1:+1707418 None:intergenic
TTTGGTAGCTTGGGACACAA+GGG 0.645817 4.1:-1707693 MS.gene052677:CDS
AGGACAGAGTACATCAGTGG+TGG 0.646873 4.1:-1708961 MS.gene052677:CDS
AGTGAGTGATATAAAGCATG+AGG 0.658021 4.1:-1708014 MS.gene052677:CDS
CCGCGTAGCCATGTGAAGAG+CGG 0.680358 4.1:+1708881 None:intergenic
CAAAGGACAGAGTACATCAG+TGG 0.688738 4.1:-1708964 MS.gene052677:CDS
TATAGGAGAATCTAACATTG+CGG 0.704490 4.1:-1707798 MS.gene052677:CDS
CACCATTAACTCTCTCACAG+TGG 0.722741 4.1:-1707897 MS.gene052677:CDS
AAGGTCTCCAGATCCAACTG+TGG 0.733074 4.1:+1710004 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGTTTATAGTTAGAAAAAA+TGG - chr4.1:1708297-1708316 MS.gene052677:intron 15.0%
!! ATTAATGAACTTTACAATTA+AGG + chr4.1:1707812-1707831 None:intergenic 15.0%
!! TGTTTATAGTTAGAAAAAAT+GGG - chr4.1:1708298-1708317 MS.gene052677:intron 15.0%
!!! ATTTTTTCTAACTATAAACA+TGG + chr4.1:1708298-1708317 None:intergenic 15.0%
!! ATCACATAATTTGATCAAAA+AGG + chr4.1:1707608-1707627 None:intergenic 20.0%
!!! AAAGTATCTACAACTATATA+TGG + chr4.1:1708591-1708610 None:intergenic 20.0%
!!! TGTTGTACATCTTTTAAATT+TGG - chr4.1:1707933-1707952 MS.gene052677:CDS 20.0%
!!! TTCTTTTTTTCTTTTGTGTT+TGG - chr4.1:1707723-1707742 MS.gene052677:CDS 20.0%
! AAAGACAAGCAAATTATGAA+AGG + chr4.1:1709111-1709130 None:intergenic 25.0%
! AGGCTCATTTATATACATAA+TGG - chr4.1:1709065-1709084 MS.gene052677:intron 25.0%
! ATTATGAAAGGATCACATAT+AGG - chr4.1:1709596-1709615 MS.gene052677:intron 25.0%
! CAACAAAAATACAAAATGAG+AGG + chr4.1:1709151-1709170 None:intergenic 25.0%
! CAATACTAGTTAATTACAAC+TGG - chr4.1:1708933-1708952 MS.gene052677:CDS 25.0%
! CTTACATTGCATAATTGTAA+TGG - chr4.1:1708042-1708061 MS.gene052677:CDS 25.0%
! GTTTGCATCAAAGATAAAAA+AGG - chr4.1:1708400-1708419 MS.gene052677:intron 25.0%
!! TGTTTGGATATTGCTATTAT+TGG - chr4.1:1707739-1707758 MS.gene052677:CDS 25.0%
!!! AAGATTGTAACATTTGCTAT+CGG + chr4.1:1708075-1708094 None:intergenic 25.0%
!!! ATGCTTGAACTTTTTTCTAT+AGG - chr4.1:1708751-1708770 MS.gene052677:intron 25.0%
!!! TTTGTTTTTCGACAACATTT+TGG - chr4.1:1709917-1709936 MS.gene052677:CDS 25.0%
AACATCATCTTCATCTATGT+CGG - chr4.1:1707498-1707517 MS.gene052677:CDS 30.0%
AAGATGGTGATAGAAGTAAT+GGG - chr4.1:1707470-1707489 MS.gene052677:CDS 30.0%
AAGCTTAATAAGGAAGAAGA+TGG - chr4.1:1707454-1707473 MS.gene052677:CDS 30.0%
AATTTCATGTTAAACGTCGT+TGG - chr4.1:1708823-1708842 MS.gene052677:intron 30.0%
ACTGTTAGAGAAGCTTAATA+AGG - chr4.1:1707444-1707463 MS.gene052677:CDS 30.0%
AGGTTGTTGGAAAGAAAAAA+TGG - chr4.1:1709828-1709847 MS.gene052677:CDS 30.0%
ATAAGGAATGAGGATAGTTT+AGG + chr4.1:1709039-1709058 None:intergenic 30.0%
ATGTCTCTTCAAAATGATCA+TGG - chr4.1:1707532-1707551 MS.gene052677:CDS 30.0%
CAATAAGTGCTTTCACAATA+CGG + chr4.1:1708362-1708381 None:intergenic 30.0%
CCTTTCATAATATATTGACC+CGG + chr4.1:1709587-1709606 None:intergenic 30.0%
GAATAAGTAGAATACCAAGA+TGG + chr4.1:1707696-1707715 None:intergenic 30.0%
TAAATGAGCCTCAACTAATA+AGG + chr4.1:1709056-1709075 None:intergenic 30.0%
TAAGGAATGAGGATAGTTTA+GGG + chr4.1:1709038-1709057 None:intergenic 30.0%
TATAGGAGAATCTAACATTG+CGG - chr4.1:1709613-1709632 MS.gene052677:intron 30.0%
TCTACTTACTAGGATAGAAT+TGG - chr4.1:1708007-1708026 MS.gene052677:CDS 30.0%
TGTTGGAAAGAAAAAATGGA+TGG - chr4.1:1709832-1709851 MS.gene052677:CDS 30.0%
TGTTGTTAACAAGCTAATGT+GGG - chr4.1:1709760-1709779 MS.gene052677:CDS 30.0%
TTCAATTACACGAAGTTTCA+GGG - chr4.1:1707840-1707859 MS.gene052677:CDS 30.0%
TTGTTGTCTTTACTGACAAA+TGG - chr4.1:1709165-1709184 MS.gene052677:CDS 30.0%
TTTCAATTCCTTAGCTATAC+CGG + chr4.1:1709468-1709487 None:intergenic 30.0%
! CTATTACCATAACTGGTTTA+GGG - chr4.1:1709855-1709874 MS.gene052677:CDS 30.0%
! TGTTGTTGTTCAAATCACTT+TGG - chr4.1:1709700-1709719 MS.gene052677:intron 30.0%
! TGTTTCTTGTTGCTTATTGA+TGG + chr4.1:1709246-1709265 None:intergenic 30.0%
!!! ACTTTTTTCCAGATATTGTG+AGG - chr4.1:1708145-1708164 MS.gene052677:CDS 30.0%
!!! CTTTTTTCCAGATATTGTGA+GGG - chr4.1:1708146-1708165 MS.gene052677:CDS 30.0%
AAAATCTCCCTCACAATATC+TGG + chr4.1:1708156-1708175 None:intergenic 35.0%
AGTGAGTGATATAAAGCATG+AGG - chr4.1:1709397-1709416 MS.gene052677:intron 35.0%
ATTGAACGAACGAGATAAGA+AGG - chr4.1:1708501-1708520 MS.gene052677:intron 35.0%
ATTGGATGAACTGTGTTTCA+GGG - chr4.1:1707757-1707776 MS.gene052677:CDS 35.0%
CAACTGTGGTGAATATTGAT+TGG + chr4.1:1707396-1707415 None:intergenic 35.0%
CAATCAATATTCACCACAGT+TGG - chr4.1:1707394-1707413 MS.gene052677:CDS 35.0%
CATGTGAAGATCTACTTACT+AGG - chr4.1:1707997-1708016 MS.gene052677:CDS 35.0%
CCGGGTCAATATATTATGAA+AGG - chr4.1:1709584-1709603 MS.gene052677:intron 35.0%
CTGTTGTTAACAAGCTAATG+TGG - chr4.1:1709759-1709778 MS.gene052677:CDS 35.0%
CTTGGCTATATTCAATTTGC+CGG - chr4.1:1709565-1709584 MS.gene052677:intron 35.0%
GAAGATGGTGATAGAAGTAA+TGG - chr4.1:1707469-1707488 MS.gene052677:CDS 35.0%
GCTAAATATGCAAGACATGT+TGG - chr4.1:1709341-1709360 MS.gene052677:intron 35.0%
GGCTGTGTAAATTTAAGCTA+TGG - chr4.1:1708992-1709011 MS.gene052677:CDS 35.0%
GTTCAATTACACGAAGTTTC+AGG - chr4.1:1707839-1707858 MS.gene052677:CDS 35.0%
TATAGCCAAGAATGCTATTG+AGG + chr4.1:1709555-1709574 None:intergenic 35.0%
TATTGGATGAACTGTGTTTC+AGG - chr4.1:1707756-1707775 MS.gene052677:CDS 35.0%
TCCTCATTCCTTATTAGTTG+AGG - chr4.1:1709045-1709064 MS.gene052677:intron 35.0%
TCTCGTTCGTTCAATATAGT+AGG + chr4.1:1708496-1708515 None:intergenic 35.0%
TTAGGGATACCTATTCTAGT+TGG - chr4.1:1709872-1709891 MS.gene052677:CDS 35.0%
TTGAACGAACGAGATAAGAA+GGG - chr4.1:1708502-1708521 MS.gene052677:intron 35.0%
TTGGCTATATTCAATTTGCC+GGG - chr4.1:1709566-1709585 MS.gene052677:intron 35.0%
! CTTGGATTTTTCCATCATCT+CGG + chr4.1:1708665-1708684 None:intergenic 35.0%
! GCTATTACCATAACTGGTTT+AGG - chr4.1:1709854-1709873 MS.gene052677:CDS 35.0%
! TAACTAGTATTGAGAACTCG+TGG + chr4.1:1708925-1708944 None:intergenic 35.0%
! TAGGGATACCTATTCTAGTT+GGG - chr4.1:1709873-1709892 MS.gene052677:CDS 35.0%
! TCAAATCACTTTGGTAGCTT+GGG - chr4.1:1709709-1709728 MS.gene052677:intron 35.0%
! TGTGGTGAATATTGATTGGT+GGG + chr4.1:1707392-1707411 None:intergenic 35.0%
! TTCAAATCACTTTGGTAGCT+TGG - chr4.1:1709708-1709727 MS.gene052677:intron 35.0%
!! CAAGAAGCACTTTCAGAATA+TGG - chr4.1:1709317-1709336 MS.gene052677:intron 35.0%
!! CATATTCTGAAAGTGCTTCT+TGG + chr4.1:1709319-1709338 None:intergenic 35.0%
!! GGATGTGGTAAATGCTATTT+TGG - chr4.1:1708257-1708276 MS.gene052677:intron 35.0%
!!! CACTGTTCTTTTAAGTTCCA+TGG + chr4.1:1709381-1709400 None:intergenic 35.0%
!!! GGTCTTGGATTTTAAAGCAT+AGG - chr4.1:1708971-1708990 MS.gene052677:CDS 35.0%
!!! TTTTTTGGCAATCGCTTTTG+AGG - chr4.1:1709808-1709827 MS.gene052677:CDS 35.0%
AACCACTGTGAGAGAGTTAA+TGG + chr4.1:1709519-1709538 None:intergenic 40.0%
ACAAGAAACAGCCTTGGATT+TGG - chr4.1:1709256-1709275 MS.gene052677:CDS 40.0%
ACAGTTTCTTCAACCCATCA+AGG + chr4.1:1707429-1707448 None:intergenic 40.0%
AGAATGCTATTGAGGCGAAA+AGG + chr4.1:1709547-1709566 None:intergenic 40.0%
AGCTGCACACAATAATCTCA+AGG - chr4.1:1707573-1707592 MS.gene052677:CDS 40.0%
AGGTATCCCTAAACCAGTTA+TGG + chr4.1:1709864-1709883 None:intergenic 40.0%
ATATTCACCACAGTTGGATC+TGG - chr4.1:1707400-1707419 MS.gene052677:CDS 40.0%
CAGTTTATCTGCCAAATCCA+AGG + chr4.1:1709270-1709289 None:intergenic 40.0%
CTACATAACGCTGTTAGGTA+TGG - chr4.1:1708330-1708349 MS.gene052677:intron 40.0%
CTTTGATGCAAACTATTGCC+TGG + chr4.1:1708393-1708412 None:intergenic 40.0%
GAATGAGTTTAACCTGTGAC+CGG + chr4.1:1708561-1708580 None:intergenic 40.0%
GACTTCCTGGAATGAATGAT+AGG - chr4.1:1708684-1708703 MS.gene052677:intron 40.0%
GCCTCAACTAATAAGGAATG+AGG + chr4.1:1709049-1709068 None:intergenic 40.0%
GTCACACAACTTACAAACCT+CGG + chr4.1:1708190-1708209 None:intergenic 40.0%
TAAGCAACAAGAAACAGCCT+TGG - chr4.1:1709250-1709269 MS.gene052677:CDS 40.0%
TCACACAACTTACAAACCTC+GGG + chr4.1:1708189-1708208 None:intergenic 40.0%
TCATTCATTCCAGGAAGTCT+TGG + chr4.1:1708683-1708702 None:intergenic 40.0%
TCCTGGAATGAATGATAGGA+AGG - chr4.1:1708688-1708707 MS.gene052677:intron 40.0%
TCCTTCCTATCATTCATTCC+AGG + chr4.1:1708692-1708711 None:intergenic 40.0%
TCTAACATTGCGGATCATGT+TGG - chr4.1:1709623-1709642 MS.gene052677:intron 40.0%
TGGAAAAATCCAAGACTTCC+TGG - chr4.1:1708671-1708690 MS.gene052677:intron 40.0%
TGGATGGCTATTACCATAAC+TGG - chr4.1:1709848-1709867 MS.gene052677:CDS 40.0%
TGGTAAAGTAGATGAAGCCA+TGG - chr4.1:1709361-1709380 MS.gene052677:intron 40.0%
TTACCACATCCAAGTGATCT+TGG + chr4.1:1708248-1708267 None:intergenic 40.0%
TTGGCAGATAAACTGCCATA+TGG - chr4.1:1709275-1709294 MS.gene052677:intron 40.0%
TTGTGTGCAGCTATGTAAAG+TGG + chr4.1:1707565-1707584 None:intergenic 40.0%
TTTCGCCTCAATAGCATTCT+TGG - chr4.1:1709547-1709566 MS.gene052677:intron 40.0%
! AAGCATCATATCACTGGTCT+TGG - chr4.1:1708956-1708975 MS.gene052677:CDS 40.0%
! CTGTGGTGAATATTGATTGG+TGG + chr4.1:1707393-1707412 None:intergenic 40.0%
! TCTAAAGCTGACGATCCATA+TGG + chr4.1:1709293-1709312 None:intergenic 40.0%
!! AACTGGAAGCATCATATCAC+TGG - chr4.1:1708950-1708969 MS.gene052677:CDS 40.0%
AAGTTGTCAGTCCGAGATGA+TGG - chr4.1:1708651-1708670 MS.gene052677:intron 45.0%
ACGAGTTTCCGGTATAGCTA+AGG - chr4.1:1709457-1709476 MS.gene052677:intron 45.0%
AGGTCAAACTGCGCTACATA+TGG - chr4.1:1708420-1708439 MS.gene052677:intron 45.0%
AGTCCAAGATCACTTGGATG+TGG - chr4.1:1708242-1708261 MS.gene052677:intron 45.0%
ATCCAAGTGATCTTGGACTG+CGG + chr4.1:1708241-1708260 None:intergenic 45.0%
CAAAGGACAGAGTACATCAG+TGG - chr4.1:1708447-1708466 MS.gene052677:intron 45.0%
CACCATTAACTCTCTCACAG+TGG - chr4.1:1709514-1709533 MS.gene052677:intron 45.0%
CTGCACTACATAACGCTGTT+AGG - chr4.1:1708325-1708344 MS.gene052677:intron 45.0%
GCAAACTATTGCCTGGTTCA+CGG + chr4.1:1708386-1708405 None:intergenic 45.0%
GTGGAAGCAAATCCTTCTCA+TGG - chr4.1:1709981-1710000 MS.gene052677:CDS 45.0%
TAGCTATACCGGAAACTCGT+CGG + chr4.1:1709457-1709476 None:intergenic 45.0%
TGCAGAGTAAGACCATGAGA+AGG + chr4.1:1709996-1710015 None:intergenic 45.0%
TTGGATCTGGAGACCTTGAT+GGG - chr4.1:1707413-1707432 MS.gene052677:CDS 45.0%
TTTCATGTTGCAGCTAAGCG+TGG - chr4.1:1707670-1707689 MS.gene052677:CDS 45.0%
TTTGCTAAGCTATGCAGCTG+TGG - chr4.1:1709211-1709230 MS.gene052677:CDS 45.0%
! ACCTATTCTAGTTGGGACTC+TGG - chr4.1:1709880-1709899 MS.gene052677:CDS 45.0%
! TTTGGTAGCTTGGGACACAA+GGG - chr4.1:1709718-1709737 MS.gene052677:intron 45.0%
!!! GCAATCGCTTTTGAGGTTGT+TGG - chr4.1:1709815-1709834 MS.gene052677:CDS 45.0%
AAAACTCGCCGACGAGTTTC+CGG - chr4.1:1709446-1709465 MS.gene052677:intron 50.0%
AAGGTCTCCAGATCCAACTG+TGG + chr4.1:1707410-1707429 None:intergenic 50.0%
ACAGAGTACATCAGTGGTGG+AGG - chr4.1:1708453-1708472 MS.gene052677:intron 50.0%
AGACGCATCAAGAGAGCAAG+TGG - chr4.1:1709962-1709981 MS.gene052677:CDS 50.0%
AGGACAGAGTACATCAGTGG+TGG - chr4.1:1708450-1708469 MS.gene052677:intron 50.0%
GCACTTATTGTCCGTGAACC+AGG - chr4.1:1708372-1708391 MS.gene052677:intron 50.0%
GCCAGAGTCCCAACTAGAAT+AGG + chr4.1:1709884-1709903 None:intergenic 50.0%
GCGCTACATATGGCTGTCAA+AGG - chr4.1:1708430-1708449 MS.gene052677:intron 50.0%
GGGTAATACCGCTCTTCACA+TGG - chr4.1:1708522-1708541 MS.gene052677:intron 50.0%
GTTGGATCTGGAGACCTTGA+TGG - chr4.1:1707412-1707431 MS.gene052677:CDS 50.0%
TGCGTCTCTGCGAATCACTT+TGG + chr4.1:1709949-1709968 None:intergenic 50.0%
TTGGACTGCGGCAGCATATA+GGG + chr4.1:1708229-1708248 None:intergenic 50.0%
! CTTTGGTAGCTTGGGACACA+AGG - chr4.1:1709717-1709736 MS.gene052677:intron 50.0%
!! TGAGGGAGATTTTGAGTGCC+TGG - chr4.1:1708163-1708182 MS.gene052677:CDS 50.0%
CAACTTACAAACCTCGGGCC+AGG + chr4.1:1708184-1708203 None:intergenic 55.0%
CTTCACATGGCTACGCGGAA+AGG - chr4.1:1708535-1708554 MS.gene052677:intron 55.0%
CTTGGACTGCGGCAGCATAT+AGG + chr4.1:1708230-1708249 None:intergenic 55.0%
GAGAACTCGTGGAACGTACG+AGG + chr4.1:1708914-1708933 None:intergenic 55.0%
TGCCGCAGTCCAAGATCACT+TGG - chr4.1:1708236-1708255 MS.gene052677:intron 55.0%
TGGACTGCGGCAGCATATAG+GGG + chr4.1:1708228-1708247 None:intergenic 55.0%
!!! TTGCACGTGCGGCGCTTTTT+TGG - chr4.1:1709793-1709812 MS.gene052677:CDS 55.0%
ACATGGCTACGCGGAAAGGC+CGG - chr4.1:1708539-1708558 MS.gene052677:intron 60.0%
CCGCGTAGCCATGTGAAGAG+CGG + chr4.1:1708533-1708552 None:intergenic 60.0%
CCGCTCTTCACATGGCTACG+CGG - chr4.1:1708530-1708549 MS.gene052677:intron 60.0%
GCAGCTAAGCGTGGCCATCT+TGG - chr4.1:1707679-1707698 MS.gene052677:CDS 60.0%
GCTGCTTGTGCTTGCACGTG+CGG - chr4.1:1709782-1709801 MS.gene052677:CDS 60.0%
TGCGGCAGCATATAGGGGAC+TGG + chr4.1:1708223-1708242 None:intergenic 60.0%
!! GATTTTGAGTGCCTGGCCCG+AGG - chr4.1:1708170-1708189 MS.gene052677:CDS 60.0%
TACGCGGAAAGGCCGGTCAC+AGG - chr4.1:1708546-1708565 MS.gene052677:intron 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 1707361 1710072 1707361 ID=MS.gene052677
chr4.1 mRNA 1707361 1710072 1707361 ID=MS.gene052677.t1;Parent=MS.gene052677
chr4.1 exon 1709733 1710072 1709733 ID=MS.gene052677.t1.exon1;Parent=MS.gene052677.t1
chr4.1 CDS 1709733 1710072 1709733 ID=cds.MS.gene052677.t1;Parent=MS.gene052677.t1
chr4.1 exon 1709080 1709276 1709080 ID=MS.gene052677.t1.exon2;Parent=MS.gene052677.t1
chr4.1 CDS 1709080 1709276 1709080 ID=cds.MS.gene052677.t1;Parent=MS.gene052677.t1
chr4.1 exon 1708866 1709039 1708866 ID=MS.gene052677.t1.exon3;Parent=MS.gene052677.t1
chr4.1 CDS 1708866 1709039 1708866 ID=cds.MS.gene052677.t1;Parent=MS.gene052677.t1
chr4.1 exon 1707361 1708233 1707361 ID=MS.gene052677.t1.exon4;Parent=MS.gene052677.t1
chr4.1 CDS 1707361 1708233 1707361 ID=cds.MS.gene052677.t1;Parent=MS.gene052677.t1
Gene Sequence

>MS.gene052677

ATGGAGTCGAAGGGTCTGCGTTTCATGACCCACCAATCAATATTCACCACAGTTGGATCTGGAGACCTTGATGGGTTGAAGAAACTGTTAGAGAAGCTTAATAAGGAAGAAGATGGTGATAGAAGTAATGGGTCATCAACATCATCTTCATCTATGTCGGTTTCTGATGTTATGTCTCTTCAAAATGATCATGGTGAAACACCACTTTACATAGCTGCACACAATAATCTCAAGGAAGTTTTCACCTTTTTGATCAAATTATGTGATTTTGAAGTTGTCAAGATTCGTTCTAAGTCTGATATGAACGCTTTTCATGTTGCAGCTAAGCGTGGCCATCTTGGTATTCTACTTATTCACTTTTTTTCTTTTTTTCTTTTGTGTTTGGATATTGCTATTATTGGATGAACTGTGTTTCAGGGTTCTAACGTGTTATTATTGATCGATTCGTCCTTAATTGTAAAGTTCATTAATCATTTGAGTTCAATTACACGAAGTTTCAGGGTGCTTAACTTCGAAATTTCAAATACATGAAGTTTATTGTAAAATTCTATTGAAACTTTTGTTTCTGATTTTGTTGTACATCTTTTAAATTTGGAATACAAAAGACTTAAAATTGAATTAGTGTTTTGTTAAATTCATGTGAAGATCTACTTACTAGGATAGAATTGGTGTGTAGATTAACTTACATTGCATAATTGTAATGGATAAACACCGATAGCAAATGTTACAATCTTGTTTGTAATGAATATATAATTAAGTTTTTCAATCATGATGTTAATGTCTAACTTTTTTCCAGATATTGTGAGGGAGATTTTGAGTGCCTGGCCCGAGGTTTGTAAGTTGTGTGACTCGACAAACACCAGTCCCCTATATGCTGCCGCAGTCCAAGATCACTTGGATGTGGTAAATGCTATTTTGGATGTTGATGTCAGCTCCATGTTTATAGTTAGAAAAAATGGGAAAACTGCACTACATAACGCTGTTAGGTATGGCGTCAACCGTATTGTGAAAGCACTTATTGTCCGTGAACCAGGCAATAGTTTGCATCAAAGATAAAAAAGGTCAAACTGCGCTACATATGGCTGTCAAAGGACAGAGTACATCAGTGGTGGAGGAGATATTACAAGCTGATCCTACTATATTGAACGAACGAGATAAGAAGGGTAATACCGCTCTTCACATGGCTACGCGGAAAGGCCGGTCACAGGTTAAACTCATTCTCTTGAACCATATATAGTTGTAGATACTTTTTAATAATATATTGATTTCAGTTTTATTGTAACTTAAACAAAGTTGTCAGTCCGAGATGATGGAAAAATCCAAGACTTCCTGGAATGAATGATAGGAAGGAAGTGAAATTATTTATCAGATTGTTATGAAAATATAAAAGATGCTTGAACTTTTTTCTATAGGTACTTAACAGTTGATACACAACATTAATGTAAGTCTAATGTGATACAATAATTTCATGTTAAACGTCGTTGGTCTTCAATAATTTAACACAACAAATTGTATATCGTAACTAATGTAGATTCTTTCGATGAATTTCTCCTCGTACGTTCCACGAGTTCTCAATACTAGTTAATTACAACTGGAAGCATCATATCACTGGTCTTGGATTTTAAAGCATAGGCTGTGTAAATTTAAGCTATGGTTTATAAGCAATTATATATGCCCTAAACTATCCTCATTCCTTATTAGTTGAGGCTCATTTATATACATAATGGAACAAAATGAATGCTTGTGTCCTTTCATAATTTGCTTGTCTTTTGTTGCAATAAATTCTTCCTCTCATTTTGTATTTTTGTTGTCTTTACTGACAAATGGTTCTTTTGTCAGATAGTGAGCTATTTGCTAAGCTATGCAGCTGTGGATGTTAATGCCATCAATAAGCAACAAGAAACAGCCTTGGATTTGGCAGATAAACTGCCATATGGATCGTCAGCTTTAGAAATCCAAGAAGCACTTTCAGAATATGGTGCTAAATATGCAAGACATGTTGGTAAAGTAGATGAAGCCATGGAACTTAAAAGAACAGTGAGTGATATAAAGCATGAGGTGCAGTCACAGCTCATACAAAACGAAAAAACTCGCCGACGAGTTTCCGGTATAGCTAAGGAATTGAAAAAACTTCATAGAGAAGCTGTTCAAAACACCATTAACTCTCTCACAGTGGTTGCTGTCCTTTTCGCCTCAATAGCATTCTTGGCTATATTCAATTTGCCGGGTCAATATATTATGAAAGGATCACATATAGGAGAATCTAACATTGCGGATCATGTTGGATTTCAAATTTTCTGTCTCTTGAATTCGACGTCTCTTTTCATTTCTCTTGCAGTTGTTGTTGTTCAAATCACTTTGGTAGCTTGGGACACAAGGGCTCAAAAGCAGATCGTGTCTGTTGTTAACAAGCTAATGTGGGCTGCTTGTGCTTGCACGTGCGGCGCTTTTTTGGCAATCGCTTTTGAGGTTGTTGGAAAGAAAAAATGGATGGCTATTACCATAACTGGTTTAGGGATACCTATTCTAGTTGGGACTCTGGCAAGCATGTGCTACTTTGTTTTTCGACAACATTTTGGCATTTTCCAAAGTGATTCGCAGAGACGCATCAAGAGAGCAAGTGGAAGCAAATCCTTCTCATGGTCTTACTCTGCAAATATATCAGATATAGACGAATACACTTCAGACATTGAGAAGATCTATGCTTTGTAA

Protein sequence

>MS.gene052677.t1

MESKGLRFMTHQSIFTTVGSGDLDGLKKLLEKLNKEEDGDRSNGSSTSSSSMSVSDVMSLQNDHGETPLYIAAHNNLKEVFTFLIKLCDFEVVKIRSKSDMNAFHVAAKRGHLDIVREILSAWPEVCKLCDSTNTSPLYAAAVQDHLDVVNAILDVDVSSMFIVRKNGKTALHNAVRYGAIVCIKDKKGQTALHMAVKGQSTSVVEEILQADPTILNERDKKGNTALHMATRKGRSQIVSYLLSYAAVDVNAINKQQETALDLADKLPYGSSALEIQEALSEYGAKYARHVGKVDEAMELKRTVSDIKHEVQSQLIQNEKTRRRVSGIAKELKKLHREAVQNTINSLTVVAVLFASIAFLAIFNLPGQYIMKGSHIGESNIADHVGFQIFCLLNSTSLFISLAVVVVQITLVAWDTRAQKQIVSVVNKLMWAACACTCGAFLAIAFEVVGKKKWMAITITGLGIPILVGTLASMCYFVFRQHFGIFQSDSQRRIKRASGSKSFSWSYSANISDIDEYTSDIEKIYAL