AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052674


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052674.t1 MTR_8g105260 98.519 540 6 1 1 540 1 538 0.0 1094
MS.gene052674.t1 MTR_1g032100 76.710 541 115 4 1 540 1 531 0.0 859
MS.gene052674.t1 MTR_4g062100 46.563 451 227 5 56 496 61 507 7.18e-131 392
MS.gene052674.t1 MTR_2g096190 41.243 531 279 7 20 540 37 544 2.24e-129 388
MS.gene052674.t1 MTR_7g117620 44.082 490 254 8 56 540 72 546 2.07e-126 381
MS.gene052674.t1 MTR_7g100390 43.838 495 258 5 54 540 38 520 1.33e-125 378
MS.gene052674.t1 MTR_1g115575 41.333 525 288 6 21 540 84 593 1.64e-124 377
MS.gene052674.t1 MTR_7g100430 37.905 525 300 7 21 540 79 582 5.08e-102 319
MS.gene052674.t1 MTR_2g101310 24.943 441 256 9 100 470 138 573 1.05e-34 139
MS.gene052674.t1 MTR_2g101320 23.341 437 262 6 100 468 138 569 2.21e-24 107
MS.gene052674.t1 MTR_2g101320 22.131 244 154 4 69 277 5 247 7.04e-11 65.5
MS.gene052674.t1 MTR_2g101310 33.516 182 119 2 100 279 138 319 2.62e-23 103
MS.gene052674.t1 MTR_1g069110 24.759 311 213 5 134 423 50 360 1.38e-19 92.0
MS.gene052674.t1 MTR_5g085810 24.009 454 292 10 49 469 252 685 5.68e-16 81.6
MS.gene052674.t1 MTR_8g068990 24.561 342 207 9 103 422 47 359 7.18e-15 77.4
MS.gene052674.t1 MTR_8g467780 24.252 301 183 6 103 382 46 322 7.92e-15 77.4
MS.gene052674.t1 MTR_8g073260 24.138 290 183 5 103 380 46 310 7.50e-14 74.3
MS.gene052674.t1 MTR_8g039620 23.793 290 187 6 103 380 49 316 1.08e-13 73.6
MS.gene052674.t1 MTR_3g085830 27.706 231 142 6 69 276 144 372 1.81e-13 73.6
MS.gene052674.t1 MTR_5g085830 24.027 437 284 13 62 469 240 657 3.90e-13 72.8
MS.gene052674.t1 MTR_7g021090 26.316 209 134 3 103 299 44 244 1.88e-12 69.7
MS.gene052674.t1 MTR_8g072510 25.234 214 140 3 103 304 45 250 2.96e-12 69.3
MS.gene052674.t1 MTR_1g059930 25.676 296 171 9 103 380 47 311 4.59e-12 68.6
MS.gene052674.t1 MTR_8g066670 22.636 349 216 8 103 422 1110 1433 6.57e-12 68.9
MS.gene052674.t1 MTR_7g451420 25.789 190 128 2 103 280 44 232 6.72e-12 67.0
MS.gene052674.t1 MTR_7g099570 26.291 213 145 5 103 304 44 255 2.27e-11 67.0
MS.gene052674.t1 MTR_3g016210 22.000 300 188 5 103 380 45 320 4.72e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052674.t1 AT2G01680 69.131 541 157 5 1 540 1 532 0.0 743
MS.gene052674.t1 AT1G07710 45.040 504 259 8 47 540 48 543 3.94e-129 388
MS.gene052674.t1 AT1G07710 45.040 504 259 8 47 540 48 543 3.94e-129 388
MS.gene052674.t1 AT2G31820 44.828 493 258 7 54 540 178 662 1.09e-123 378
MS.gene052674.t1 AT5G60070 42.607 514 263 8 14 515 36 529 1.35e-122 371
MS.gene052674.t1 AT1G05640 44.646 495 257 8 54 540 142 627 1.17e-119 366
MS.gene052674.t1 AT5G02620 42.324 482 249 5 24 492 27 492 1.02e-115 353
MS.gene052674.t1 AT5G02620 42.324 482 249 5 24 492 27 492 1.02e-115 353
MS.gene052674.t1 AT5G02620 42.324 482 249 5 24 492 27 492 1.02e-115 353
MS.gene052674.t1 AT3G12360 39.847 522 296 6 21 540 73 578 3.34e-115 353
MS.gene052674.t1 AT3G12360 39.847 522 296 6 21 540 85 590 6.23e-115 353
MS.gene052674.t1 AT5G02620 40.594 505 248 6 24 492 27 515 4.84e-111 341
MS.gene052674.t1 AT5G02620 40.594 505 248 6 24 492 27 515 4.84e-111 341
MS.gene052674.t1 AT3G09550 39.655 522 300 8 21 540 106 614 9.45e-111 343
MS.gene052674.t1 AT3G09550 39.655 522 300 8 21 540 99 607 1.13e-110 342
MS.gene052674.t1 AT3G09550 39.655 522 300 8 21 540 99 607 1.13e-110 342
MS.gene052674.t1 AT5G54710 27.105 487 311 12 57 506 94 573 3.52e-39 151
MS.gene052674.t1 AT5G54710 27.105 487 311 12 57 506 139 618 7.56e-39 150
MS.gene052674.t1 AT1G34050 26.020 392 264 8 112 494 162 536 5.33e-34 136
MS.gene052674.t1 AT2G24600 22.078 462 310 9 56 485 96 539 3.47e-31 128
MS.gene052674.t1 AT2G24600 22.078 462 310 9 56 485 96 539 3.47e-31 128
MS.gene052674.t1 AT1G10340 22.326 430 290 10 56 459 96 507 2.04e-25 110
MS.gene052674.t1 AT1G10340 22.034 531 302 14 12 459 2 503 1.81e-24 107
MS.gene052674.t1 AT5G51160 27.566 341 201 10 131 438 44 371 4.12e-23 102
MS.gene052674.t1 AT4G03460 25.387 323 204 5 105 422 205 495 1.13e-22 102
MS.gene052674.t1 AT4G03460 25.387 323 204 5 105 422 237 527 1.15e-22 102
MS.gene052674.t1 AT1G03670 23.490 447 299 7 56 492 171 584 6.57e-22 100
MS.gene052674.t1 AT5G54700 24.716 352 206 10 163 505 26 327 1.11e-21 97.1
MS.gene052674.t1 AT4G03500 22.824 425 281 7 62 477 212 598 6.41e-21 97.1
MS.gene052674.t1 AT4G03500 22.824 425 281 7 62 477 189 575 8.65e-21 96.7
MS.gene052674.t1 AT4G03500 22.824 425 281 7 62 477 189 575 8.65e-21 96.7
MS.gene052674.t1 AT4G10720 25.073 343 217 10 103 429 40 358 1.62e-19 91.3
MS.gene052674.t1 AT4G10720 26.280 293 181 7 103 380 40 312 2.08e-19 91.3
MS.gene052674.t1 AT2G24600 23.416 363 234 8 56 392 96 440 5.53e-19 90.9
MS.gene052674.t1 AT2G24600 23.416 363 234 8 56 392 96 440 5.53e-19 90.9
MS.gene052674.t1 AT4G03490 22.768 448 313 11 49 476 128 562 4.41e-18 88.2
MS.gene052674.t1 AT4G03490 22.768 448 313 11 49 476 118 552 4.68e-18 88.2
MS.gene052674.t1 AT4G03490 22.768 448 313 11 49 476 128 562 6.32e-18 87.8
MS.gene052674.t1 AT4G03490 23.235 439 284 10 49 476 108 504 6.85e-18 87.8
MS.gene052674.t1 AT4G03490 23.235 439 284 10 49 476 118 514 8.13e-18 87.4
MS.gene052674.t1 AT5G50140 23.094 446 280 14 65 456 27 463 2.10e-17 85.9
MS.gene052674.t1 AT4G03440 22.613 398 284 7 105 498 311 688 3.88e-17 85.5
MS.gene052674.t1 AT4G03440 22.613 398 284 7 105 498 311 688 3.88e-17 85.5
MS.gene052674.t1 AT4G03440 22.613 398 284 7 105 498 318 695 4.49e-17 85.1
MS.gene052674.t1 AT4G03480 24.403 377 244 9 60 422 310 659 3.08e-16 82.4
MS.gene052674.t1 AT4G03480 24.403 377 244 9 60 422 307 656 3.29e-16 82.4
MS.gene052674.t1 AT5G54700 31.126 151 100 2 343 489 200 350 5.80e-16 80.9
MS.gene052674.t1 AT5G15500 23.393 389 208 9 100 424 2 364 1.07e-14 77.0
MS.gene052674.t1 AT4G14390 22.248 427 290 8 56 472 220 614 1.26e-14 77.4
MS.gene052674.t1 AT4G14390 22.973 370 252 6 105 472 295 633 1.54e-14 77.0
MS.gene052674.t1 AT5G54610 24.555 281 182 6 103 372 40 301 3.33e-14 75.1
MS.gene052674.t1 AT3G04140 28.125 288 175 7 14 276 106 386 4.98e-14 75.5
MS.gene052674.t1 AT3G04140 29.891 184 110 5 92 256 217 400 8.69e-11 65.1
MS.gene052674.t1 AT4G14390 23.352 364 243 7 111 472 305 634 7.43e-14 75.1
MS.gene052674.t1 AT1G14480 27.391 230 149 5 103 316 40 267 2.28e-13 72.8
MS.gene052674.t1 AT5G54620 25.806 186 126 2 103 276 40 225 9.52e-13 70.9
MS.gene052674.t1 AT1G14500 29.101 189 116 5 103 276 40 225 1.84e-11 66.6

Find 102 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATGTGGTAAATGCTATTT+TGG 0.194879 4.1:-1735499 MS.gene052674:CDS
AAAACTCGCCGACGAGTTTC+CGG 0.220434 4.1:-1734310 MS.gene052674:CDS
CATATTCTGAAAGTGCTTCT+TGG 0.231591 4.1:+1734440 None:intergenic
GCTATTACCATAACTGGTTT+AGG 0.239123 4.1:-1733902 MS.gene052674:CDS
TTTCGCCTCAATAGCATTCT+TGG 0.274513 4.1:-1734209 MS.gene052674:CDS
CAAGAAGCACTTTCAGAATA+TGG 0.283596 4.1:-1734439 MS.gene052674:CDS
TTGGACTGCGGCAGCATATA+GGG 0.294971 4.1:+1735530 None:intergenic
AACCACTGTGAGAGAGTTAA+TGG 0.303008 4.1:+1734240 None:intergenic
TGGATGGCTATTACCATAAC+TGG 0.303698 4.1:-1733908 MS.gene052674:CDS
CTATTACCATAACTGGTTTA+GGG 0.304499 4.1:-1733901 MS.gene052674:CDS
ATCACATAATTTGATCAAAA+AGG 0.308077 4.1:+1736154 None:intergenic
TGTTTCTTGTTGCTTATTGA+TGG 0.315784 4.1:+1734513 None:intergenic
CTTGGCTATATTCAATTTGC+CGG 0.319423 4.1:-1734191 MS.gene052674:CDS
CTTGGACTGCGGCAGCATAT+AGG 0.333630 4.1:+1735529 None:intergenic
TCTTTGATGCAAACTATTCC+TGG 0.336681 4.1:+1735366 None:intergenic
ACAAGAAACAGCCTTGGATT+TGG 0.348845 4.1:-1734500 MS.gene052674:CDS
TTCAAATCACTTTGGTAGCT+TGG 0.363305 4.1:-1734048 MS.gene052674:CDS
TTACCACATCCAAGTGATCT+TGG 0.370317 4.1:+1735511 None:intergenic
CTGCACTACATAACGCTGTT+AGG 0.375628 4.1:-1735431 MS.gene052674:CDS
GTTGGATCTGGAGACCTTGA+TGG 0.415237 4.1:-1736347 MS.gene052674:CDS
TCAAATCACTTTGGTAGCTT+GGG 0.417875 4.1:-1734047 MS.gene052674:CDS
TTTCAATTCCTTAGCTATAC+CGG 0.426970 4.1:+1734291 None:intergenic
AGGTCAAACTGCGCTACATA+TGG 0.431611 4.1:-1735337 MS.gene052674:CDS
TAGGGATACCTATTCTAGTT+GGG 0.436179 4.1:-1733883 MS.gene052674:CDS
TCTCGTTCGTTCAATATAGT+AGG 0.439653 4.1:+1735264 None:intergenic
CAATAAGTGCTTTCACAATA+CGG 0.440583 4.1:+1735397 None:intergenic
ACTGTTAGAGAAGCTTAATA+AGG 0.441562 4.1:-1736315 MS.gene052674:CDS
ATATTCACCACAGTTGGATC+TGG 0.453733 4.1:-1736359 MS.gene052674:CDS
TTAGGGATACCTATTCTAGT+TGG 0.455818 4.1:-1733884 MS.gene052674:CDS
TGCGTCTCTGCGAATCACTT+TGG 0.457508 4.1:+1733810 None:intergenic
GAAGATGGTGATAGAAGTAA+TGG 0.458453 4.1:-1736290 MS.gene052674:CDS
AGGTATCCCTAAACCAGTTA+TGG 0.460403 4.1:+1733895 None:intergenic
GCAGCTAAGCGTGGCCATCT+TGG 0.468196 4.1:-1736080 MS.gene052674:intron
ATTATGAAAGGATCACATAT+AGG 0.475016 4.1:-1734160 MS.gene052674:CDS
AAGCTTAATAAGGAAGAAGA+TGG 0.476184 4.1:-1736305 MS.gene052674:CDS
GCACTTATTGTCCGTGAACC+AGG 0.483840 4.1:-1735384 MS.gene052674:CDS
ATTGAACGAACGAGATAAGA+AGG 0.492542 4.1:-1735256 MS.gene052674:CDS
ACAGTTTCTTCAACCCATCA+AGG 0.495729 4.1:+1736333 None:intergenic
TGCAAACTATTCCTGGTTCA+CGG 0.500786 4.1:+1735373 None:intergenic
TTGGCAGATAAACTGCCATA+TGG 0.504776 4.1:-1734481 MS.gene052674:CDS
AGACGCATCAAGAGAGCAAG+TGG 0.505968 4.1:-1733794 MS.gene052674:CDS
CTTTGGTAGCTTGGGACACA+AGG 0.509015 4.1:-1734039 MS.gene052674:CDS
TCTAAAGCTGACGATCCATA+TGG 0.511646 4.1:+1734466 None:intergenic
CAATCAATATTCACCACAGT+TGG 0.516406 4.1:-1736365 MS.gene052674:CDS
GCCAGAGTCCCAACTAGAAT+AGG 0.516542 4.1:+1733875 None:intergenic
CCGGGTCAATATATTATGAA+AGG 0.520442 4.1:-1734172 MS.gene052674:CDS
TACGCGGAAAGGCCGGTCAC+AGG 0.521929 4.1:-1735211 MS.gene052674:intron
CTTCACATGGCTACGCGGAA+AGG 0.523901 4.1:-1735222 MS.gene052674:CDS
CTACATAACGCTGTTAGGTA+TGG 0.525429 4.1:-1735426 MS.gene052674:CDS
GTCACACAACTTACAAACCT+CGG 0.525962 4.1:+1735569 None:intergenic
CTGTTGTTAACAAGCTAATG+TGG 0.526218 4.1:-1733997 MS.gene052674:CDS
AGAATGCTATTGAGGCGAAA+AGG 0.530984 4.1:+1734212 None:intergenic
AACATCATCTTCATCTATGT+CGG 0.533622 4.1:-1736261 MS.gene052674:CDS
ACATGGCTACGCGGAAAGGC+CGG 0.534860 4.1:-1735218 MS.gene052674:CDS
ACCTATTCTAGTTGGGACTC+TGG 0.537549 4.1:-1733876 MS.gene052674:CDS
ACAGAGTACATCAGTGGTGG+AGG 0.543153 4.1:-1735304 MS.gene052674:CDS
TTGGCTATATTCAATTTGCC+GGG 0.547911 4.1:-1734190 MS.gene052674:CDS
TAAGCAACAAGAAACAGCCT+TGG 0.552301 4.1:-1734506 MS.gene052674:CDS
CAACTTACAAACCTCGGGCC+AGG 0.555562 4.1:+1735575 None:intergenic
TATAGCCAAGAATGCTATTG+AGG 0.559760 4.1:+1734204 None:intergenic
TCTAACATTGCGGATCATGT+TGG 0.560863 4.1:-1734133 MS.gene052674:CDS
GCTAAATATGCAAGACATGT+TGG 0.561894 4.1:-1734415 MS.gene052674:CDS
GTGGAAGCAAATCCTTCTCA+TGG 0.564022 4.1:-1733775 MS.gene052674:CDS
TCACACAACTTACAAACCTC+GGG 0.565097 4.1:+1735570 None:intergenic
TGCGGCAGCATATAGGGGAC+TGG 0.565490 4.1:+1735536 None:intergenic
AAGATGGTGATAGAAGTAAT+GGG 0.566107 4.1:-1736289 MS.gene052674:CDS
ATCCAAGTGATCTTGGACTG+CGG 0.566122 4.1:+1735518 None:intergenic
TTGGATCTGGAGACCTTGAT+GGG 0.566977 4.1:-1736346 MS.gene052674:CDS
TGCCGCAGTCCAAGATCACT+TGG 0.567594 4.1:-1735520 MS.gene052674:CDS
TGTTGTTGTTCAAATCACTT+TGG 0.570912 4.1:-1734056 MS.gene052674:CDS
TGGACTGCGGCAGCATATAG+GGG 0.571980 4.1:+1735531 None:intergenic
CAACTGTGGTGAATATTGAT+TGG 0.577431 4.1:+1736366 None:intergenic
TAGCTATACCGGAAACTCGT+CGG 0.577902 4.1:+1734302 None:intergenic
CAGTTTATCTGCCAAATCCA+AGG 0.577959 4.1:+1734489 None:intergenic
ATGTCTCTTCAAAATGATCA+TGG 0.578765 4.1:-1736227 MS.gene052674:CDS
GCGCTACATATGGCTGTCAA+AGG 0.582666 4.1:-1735327 MS.gene052674:CDS
GAATGAGTTTAACCTGTGAC+CGG 0.583506 4.1:+1735199 None:intergenic
GGGTAATACCGCTCTTCACA+TGG 0.583634 4.1:-1735235 MS.gene052674:CDS
CCTTTCATAATATATTGACC+CGG 0.584046 4.1:+1734172 None:intergenic
TTTCATGTTGCAGCTAAGCG+TGG 0.587939 4.1:-1736089 MS.gene052674:CDS
TTTGCTAAGCTATGCAGCTG+TGG 0.589326 4.1:-1734545 MS.gene052674:CDS
GCTGCTTGTGCTTGCACGTG+CGG 0.591233 4.1:-1733974 MS.gene052674:CDS
ACGAGTTTCCGGTATAGCTA+AGG 0.593408 4.1:-1734299 MS.gene052674:CDS
CTGTGGTGAATATTGATTGG+TGG 0.599501 4.1:+1736369 None:intergenic
AGCTGCACACAATAATCTCA+AGG 0.604525 4.1:-1736186 MS.gene052674:CDS
AGTCCAAGATCACTTGGATG+TGG 0.606081 4.1:-1735514 MS.gene052674:CDS
TGGTAAAGTAGATGAAGCCA+TGG 0.615814 4.1:-1734395 MS.gene052674:CDS
CCGCTCTTCACATGGCTACG+CGG 0.621597 4.1:-1735227 MS.gene052674:CDS
TTGAACGAACGAGATAAGAA+GGG 0.622382 4.1:-1735255 MS.gene052674:CDS
TGTGGTGAATATTGATTGGT+GGG 0.623793 4.1:+1736370 None:intergenic
TTGTGTGCAGCTATGTAAAG+TGG 0.624900 4.1:+1736197 None:intergenic
GAATAAGTAGAATACCAAGA+TGG 0.625558 4.1:+1736066 None:intergenic
TGTTGTTAACAAGCTAATGT+GGG 0.633610 4.1:-1733996 MS.gene052674:CDS
TGCAGAGTAAGACCATGAGA+AGG 0.634865 4.1:+1733763 None:intergenic
TTTGGTAGCTTGGGACACAA+GGG 0.645817 4.1:-1734038 MS.gene052674:CDS
AGGACAGAGTACATCAGTGG+TGG 0.646873 4.1:-1735307 MS.gene052674:CDS
AGTGAGTGATATAAAGCATG+AGG 0.658021 4.1:-1734359 MS.gene052674:CDS
CCGCGTAGCCATGTGAAGAG+CGG 0.680358 4.1:+1735227 None:intergenic
CAAAGGACAGAGTACATCAG+TGG 0.688738 4.1:-1735310 MS.gene052674:CDS
TATAGGAGAATCTAACATTG+CGG 0.704490 4.1:-1734143 MS.gene052674:CDS
CACCATTAACTCTCTCACAG+TGG 0.722741 4.1:-1734242 MS.gene052674:CDS
AAGGTCTCCAGATCCAACTG+TGG 0.733074 4.1:+1736352 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGTTTATAGTTAGAAAAAA+TGG - chr4.1:1734645-1734664 MS.gene052674:intron 15.0%
!! ATTAATGAACTTTACAATTA+AGG + chr4.1:1734157-1734176 None:intergenic 15.0%
!! TGTTTATAGTTAGAAAAAAT+GGG - chr4.1:1734646-1734665 MS.gene052674:intron 15.0%
!!! ATTTTTTCTAACTATAAACA+TGG + chr4.1:1734646-1734665 None:intergenic 15.0%
!! ATCACATAATTTGATCAAAA+AGG + chr4.1:1733953-1733972 None:intergenic 20.0%
!!! AAAGTATCTACAACTATATA+TGG + chr4.1:1734938-1734957 None:intergenic 20.0%
!!! TGTTGTACATCTTTTAAATT+TGG - chr4.1:1734281-1734300 MS.gene052674:CDS 20.0%
!!! TTCTTTTTTTCTTTTGTGTT+TGG - chr4.1:1734068-1734087 MS.gene052674:CDS 20.0%
! AAAGACAAGCAAATTATGAA+AGG + chr4.1:1735459-1735478 None:intergenic 25.0%
! AGGCTCATTTATATACATAA+TGG - chr4.1:1735413-1735432 MS.gene052674:CDS 25.0%
! ATTATGAAAGGATCACATAT+AGG - chr4.1:1735944-1735963 MS.gene052674:intron 25.0%
! CAACAAAAATACAAAATGAG+AGG + chr4.1:1735499-1735518 None:intergenic 25.0%
! CAATACTAGTTAATTACAAC+TGG - chr4.1:1735281-1735300 MS.gene052674:CDS 25.0%
! CTTACATTGCATAATTGTAA+TGG - chr4.1:1734390-1734409 MS.gene052674:CDS 25.0%
! GTTTGCATCAAAGATAAAAA+AGG - chr4.1:1734747-1734766 MS.gene052674:intron 25.0%
!! TGTTTGGATATTGCTATTAT+TGG - chr4.1:1734084-1734103 MS.gene052674:CDS 25.0%
!!! AAGATTGTAACATTTGCTAT+CGG + chr4.1:1734423-1734442 None:intergenic 25.0%
!!! ATGCTTGAACTTTTTTCTAT+AGG - chr4.1:1735099-1735118 MS.gene052674:intron 25.0%
!!! TTTGTTTTTCGACAACATTT+TGG - chr4.1:1736265-1736284 MS.gene052674:CDS 25.0%
AACATCATCTTCATCTATGT+CGG - chr4.1:1733843-1733862 MS.gene052674:CDS 30.0%
AAGATGGTGATAGAAGTAAT+GGG - chr4.1:1733815-1733834 MS.gene052674:CDS 30.0%
AAGCTTAATAAGGAAGAAGA+TGG - chr4.1:1733799-1733818 MS.gene052674:CDS 30.0%
AATTTCATGTTAAACGTCGT+TGG - chr4.1:1735171-1735190 MS.gene052674:intron 30.0%
ACTGTTAGAGAAGCTTAATA+AGG - chr4.1:1733789-1733808 MS.gene052674:CDS 30.0%
AGGTTGTTGGAAAGAAAAAA+TGG - chr4.1:1736176-1736195 MS.gene052674:CDS 30.0%
ATAAGGAATGAGGATAGTTT+AGG + chr4.1:1735387-1735406 None:intergenic 30.0%
ATGTCTCTTCAAAATGATCA+TGG - chr4.1:1733877-1733896 MS.gene052674:CDS 30.0%
CAATAAGTGCTTTCACAATA+CGG + chr4.1:1734710-1734729 None:intergenic 30.0%
CCTTTCATAATATATTGACC+CGG + chr4.1:1735935-1735954 None:intergenic 30.0%
GAATAAGTAGAATACCAAGA+TGG + chr4.1:1734041-1734060 None:intergenic 30.0%
TAAATGAGCCTCAACTAATA+AGG + chr4.1:1735404-1735423 None:intergenic 30.0%
TAAGGAATGAGGATAGTTTA+GGG + chr4.1:1735386-1735405 None:intergenic 30.0%
TATAGGAGAATCTAACATTG+CGG - chr4.1:1735961-1735980 MS.gene052674:intron 30.0%
TCTACTTACTAGGATAGAAT+TGG - chr4.1:1734355-1734374 MS.gene052674:CDS 30.0%
TGTTGGAAAGAAAAAATGGA+TGG - chr4.1:1736180-1736199 MS.gene052674:CDS 30.0%
TGTTGTTAACAAGCTAATGT+GGG - chr4.1:1736108-1736127 MS.gene052674:CDS 30.0%
TTCAATTACACGAAGTTTCA+GGG - chr4.1:1734185-1734204 MS.gene052674:CDS 30.0%
TTGTTGTCTTTACTGACAAA+TGG - chr4.1:1735513-1735532 MS.gene052674:CDS 30.0%
TTTCAATTCCTTAGCTATAC+CGG + chr4.1:1735816-1735835 None:intergenic 30.0%
! CTATTACCATAACTGGTTTA+GGG - chr4.1:1736203-1736222 MS.gene052674:CDS 30.0%
! TGTTGTTGTTCAAATCACTT+TGG - chr4.1:1736048-1736067 MS.gene052674:intron 30.0%
! TGTTTCTTGTTGCTTATTGA+TGG + chr4.1:1735594-1735613 None:intergenic 30.0%
!!! ACTTTTTTCCAGATATTGTG+AGG - chr4.1:1734493-1734512 MS.gene052674:CDS 30.0%
!!! CTTTTTTCCAGATATTGTGA+GGG - chr4.1:1734494-1734513 MS.gene052674:CDS 30.0%
AAAATCTCCCTCACAATATC+TGG + chr4.1:1734504-1734523 None:intergenic 35.0%
AGTGAGTGATATAAAGCATG+AGG - chr4.1:1735745-1735764 MS.gene052674:intron 35.0%
ATTGAACGAACGAGATAAGA+AGG - chr4.1:1734848-1734867 MS.gene052674:intron 35.0%
ATTGGATGAACTGTGTTTCA+GGG - chr4.1:1734102-1734121 MS.gene052674:CDS 35.0%
CAACTGTGGTGAATATTGAT+TGG + chr4.1:1733741-1733760 None:intergenic 35.0%
CAATCAATATTCACCACAGT+TGG - chr4.1:1733739-1733758 MS.gene052674:CDS 35.0%
CATGTGAAGATCTACTTACT+AGG - chr4.1:1734345-1734364 MS.gene052674:CDS 35.0%
CCGGGTCAATATATTATGAA+AGG - chr4.1:1735932-1735951 MS.gene052674:intron 35.0%
CTGTTGTTAACAAGCTAATG+TGG - chr4.1:1736107-1736126 MS.gene052674:CDS 35.0%
CTTGGCTATATTCAATTTGC+CGG - chr4.1:1735913-1735932 MS.gene052674:intron 35.0%
GAAGATGGTGATAGAAGTAA+TGG - chr4.1:1733814-1733833 MS.gene052674:CDS 35.0%
GCTAAATATGCAAGACATGT+TGG - chr4.1:1735689-1735708 MS.gene052674:intron 35.0%
GGCTGTGTAAATTTAAGCTA+TGG - chr4.1:1735340-1735359 MS.gene052674:CDS 35.0%
GTTCAATTACACGAAGTTTC+AGG - chr4.1:1734184-1734203 MS.gene052674:CDS 35.0%
TATAGCCAAGAATGCTATTG+AGG + chr4.1:1735903-1735922 None:intergenic 35.0%
TATTGGATGAACTGTGTTTC+AGG - chr4.1:1734101-1734120 MS.gene052674:CDS 35.0%
TCCTCATTCCTTATTAGTTG+AGG - chr4.1:1735393-1735412 MS.gene052674:CDS 35.0%
TCTCGTTCGTTCAATATAGT+AGG + chr4.1:1734843-1734862 None:intergenic 35.0%
TCTTTGATGCAAACTATTCC+TGG + chr4.1:1734741-1734760 None:intergenic 35.0%
TTAGGGATACCTATTCTAGT+TGG - chr4.1:1736220-1736239 MS.gene052674:CDS 35.0%
TTGAACGAACGAGATAAGAA+GGG - chr4.1:1734849-1734868 MS.gene052674:intron 35.0%
TTGGCTATATTCAATTTGCC+GGG - chr4.1:1735914-1735933 MS.gene052674:intron 35.0%
! CTTGGATTTTTCCATCATCT+CGG + chr4.1:1735013-1735032 None:intergenic 35.0%
! GCTATTACCATAACTGGTTT+AGG - chr4.1:1736202-1736221 MS.gene052674:CDS 35.0%
! TAACTAGTATTGAGAACTCG+TGG + chr4.1:1735273-1735292 None:intergenic 35.0%
! TAGGGATACCTATTCTAGTT+GGG - chr4.1:1736221-1736240 MS.gene052674:CDS 35.0%
! TCAAATCACTTTGGTAGCTT+GGG - chr4.1:1736057-1736076 MS.gene052674:intron 35.0%
! TGTGGTGAATATTGATTGGT+GGG + chr4.1:1733737-1733756 None:intergenic 35.0%
! TTCAAATCACTTTGGTAGCT+TGG - chr4.1:1736056-1736075 MS.gene052674:intron 35.0%
!! CAAGAAGCACTTTCAGAATA+TGG - chr4.1:1735665-1735684 MS.gene052674:intron 35.0%
!! CATATTCTGAAAGTGCTTCT+TGG + chr4.1:1735667-1735686 None:intergenic 35.0%
!! GGATGTGGTAAATGCTATTT+TGG - chr4.1:1734605-1734624 MS.gene052674:intron 35.0%
!!! CACTGTTCTTTTAAGTTCCA+TGG + chr4.1:1735729-1735748 None:intergenic 35.0%
!!! GGTCTTGGATTTTAAAGCAT+AGG - chr4.1:1735319-1735338 MS.gene052674:CDS 35.0%
!!! TTTTTTGGCAATCGCTTTTG+AGG - chr4.1:1736156-1736175 MS.gene052674:CDS 35.0%
AACCACTGTGAGAGAGTTAA+TGG + chr4.1:1735867-1735886 None:intergenic 40.0%
ACAAGAAACAGCCTTGGATT+TGG - chr4.1:1735604-1735623 MS.gene052674:intron 40.0%
ACAGTTTCTTCAACCCATCA+AGG + chr4.1:1733774-1733793 None:intergenic 40.0%
AGAATGCTATTGAGGCGAAA+AGG + chr4.1:1735895-1735914 None:intergenic 40.0%
AGCTGCACACAATAATCTCA+AGG - chr4.1:1733918-1733937 MS.gene052674:CDS 40.0%
AGGTATCCCTAAACCAGTTA+TGG + chr4.1:1736212-1736231 None:intergenic 40.0%
ATATTCACCACAGTTGGATC+TGG - chr4.1:1733745-1733764 MS.gene052674:CDS 40.0%
CAGTTTATCTGCCAAATCCA+AGG + chr4.1:1735618-1735637 None:intergenic 40.0%
CTACATAACGCTGTTAGGTA+TGG - chr4.1:1734678-1734697 MS.gene052674:intron 40.0%
GAATGAGTTTAACCTGTGAC+CGG + chr4.1:1734908-1734927 None:intergenic 40.0%
GACTTCCTGGAATGAATGAT+AGG - chr4.1:1735032-1735051 MS.gene052674:intron 40.0%
GCCTCAACTAATAAGGAATG+AGG + chr4.1:1735397-1735416 None:intergenic 40.0%
GTCACACAACTTACAAACCT+CGG + chr4.1:1734538-1734557 None:intergenic 40.0%
TAAGCAACAAGAAACAGCCT+TGG - chr4.1:1735598-1735617 MS.gene052674:CDS 40.0%
TCACACAACTTACAAACCTC+GGG + chr4.1:1734537-1734556 None:intergenic 40.0%
TCATTCATTCCAGGAAGTCT+TGG + chr4.1:1735031-1735050 None:intergenic 40.0%
TCCTGGAATGAATGATAGGA+AGG - chr4.1:1735036-1735055 MS.gene052674:intron 40.0%
TCCTTCCTATCATTCATTCC+AGG + chr4.1:1735040-1735059 None:intergenic 40.0%
TCTAACATTGCGGATCATGT+TGG - chr4.1:1735971-1735990 MS.gene052674:intron 40.0%
TGCAAACTATTCCTGGTTCA+CGG + chr4.1:1734734-1734753 None:intergenic 40.0%
TGGAAAAATCCAAGACTTCC+TGG - chr4.1:1735019-1735038 MS.gene052674:intron 40.0%
TGGATGGCTATTACCATAAC+TGG - chr4.1:1736196-1736215 MS.gene052674:CDS 40.0%
TGGTAAAGTAGATGAAGCCA+TGG - chr4.1:1735709-1735728 MS.gene052674:intron 40.0%
TTACCACATCCAAGTGATCT+TGG + chr4.1:1734596-1734615 None:intergenic 40.0%
TTGGCAGATAAACTGCCATA+TGG - chr4.1:1735623-1735642 MS.gene052674:intron 40.0%
TTGTGTGCAGCTATGTAAAG+TGG + chr4.1:1733910-1733929 None:intergenic 40.0%
TTTCGCCTCAATAGCATTCT+TGG - chr4.1:1735895-1735914 MS.gene052674:intron 40.0%
! AAGCATCATATCACTGGTCT+TGG - chr4.1:1735304-1735323 MS.gene052674:CDS 40.0%
! CTGTGGTGAATATTGATTGG+TGG + chr4.1:1733738-1733757 None:intergenic 40.0%
! TCTAAAGCTGACGATCCATA+TGG + chr4.1:1735641-1735660 None:intergenic 40.0%
!! AACTGGAAGCATCATATCAC+TGG - chr4.1:1735298-1735317 MS.gene052674:CDS 40.0%
AAGTTGTCAGTCCGAGATGA+TGG - chr4.1:1734999-1735018 MS.gene052674:intron 45.0%
ACGAGTTTCCGGTATAGCTA+AGG - chr4.1:1735805-1735824 MS.gene052674:intron 45.0%
AGGTCAAACTGCGCTACATA+TGG - chr4.1:1734767-1734786 MS.gene052674:intron 45.0%
AGTCCAAGATCACTTGGATG+TGG - chr4.1:1734590-1734609 MS.gene052674:intron 45.0%
ATCCAAGTGATCTTGGACTG+CGG + chr4.1:1734589-1734608 None:intergenic 45.0%
CAAAGGACAGAGTACATCAG+TGG - chr4.1:1734794-1734813 MS.gene052674:intron 45.0%
CACCATTAACTCTCTCACAG+TGG - chr4.1:1735862-1735881 MS.gene052674:intron 45.0%
CTGCACTACATAACGCTGTT+AGG - chr4.1:1734673-1734692 MS.gene052674:intron 45.0%
GTGGAAGCAAATCCTTCTCA+TGG - chr4.1:1736329-1736348 MS.gene052674:CDS 45.0%
TAGCTATACCGGAAACTCGT+CGG + chr4.1:1735805-1735824 None:intergenic 45.0%
TGCAGAGTAAGACCATGAGA+AGG + chr4.1:1736344-1736363 None:intergenic 45.0%
TTGGATCTGGAGACCTTGAT+GGG - chr4.1:1733758-1733777 MS.gene052674:CDS 45.0%
TTTCATGTTGCAGCTAAGCG+TGG - chr4.1:1734015-1734034 MS.gene052674:CDS 45.0%
TTTGCTAAGCTATGCAGCTG+TGG - chr4.1:1735559-1735578 MS.gene052674:CDS 45.0%
! ACCTATTCTAGTTGGGACTC+TGG - chr4.1:1736228-1736247 MS.gene052674:CDS 45.0%
! TTTGGTAGCTTGGGACACAA+GGG - chr4.1:1736066-1736085 MS.gene052674:intron 45.0%
!!! GCAATCGCTTTTGAGGTTGT+TGG - chr4.1:1736163-1736182 MS.gene052674:CDS 45.0%
AAAACTCGCCGACGAGTTTC+CGG - chr4.1:1735794-1735813 MS.gene052674:intron 50.0%
AAGGTCTCCAGATCCAACTG+TGG + chr4.1:1733755-1733774 None:intergenic 50.0%
ACAGAGTACATCAGTGGTGG+AGG - chr4.1:1734800-1734819 MS.gene052674:intron 50.0%
AGACGCATCAAGAGAGCAAG+TGG - chr4.1:1736310-1736329 MS.gene052674:CDS 50.0%
AGGACAGAGTACATCAGTGG+TGG - chr4.1:1734797-1734816 MS.gene052674:intron 50.0%
GCACTTATTGTCCGTGAACC+AGG - chr4.1:1734720-1734739 MS.gene052674:intron 50.0%
GCCAGAGTCCCAACTAGAAT+AGG + chr4.1:1736232-1736251 None:intergenic 50.0%
GCGCTACATATGGCTGTCAA+AGG - chr4.1:1734777-1734796 MS.gene052674:intron 50.0%
GGGTAATACCGCTCTTCACA+TGG - chr4.1:1734869-1734888 MS.gene052674:intron 50.0%
GTTGGATCTGGAGACCTTGA+TGG - chr4.1:1733757-1733776 MS.gene052674:CDS 50.0%
TGCGTCTCTGCGAATCACTT+TGG + chr4.1:1736297-1736316 None:intergenic 50.0%
TTGGACTGCGGCAGCATATA+GGG + chr4.1:1734577-1734596 None:intergenic 50.0%
! CTTTGGTAGCTTGGGACACA+AGG - chr4.1:1736065-1736084 MS.gene052674:intron 50.0%
!! TGAGGGAGATTTTGAGTGCC+TGG - chr4.1:1734511-1734530 MS.gene052674:CDS 50.0%
CAACTTACAAACCTCGGGCC+AGG + chr4.1:1734532-1734551 None:intergenic 55.0%
CTTCACATGGCTACGCGGAA+AGG - chr4.1:1734882-1734901 MS.gene052674:intron 55.0%
CTTGGACTGCGGCAGCATAT+AGG + chr4.1:1734578-1734597 None:intergenic 55.0%
GAGAACTCGTGGAACGTACG+AGG + chr4.1:1735262-1735281 None:intergenic 55.0%
TGCCGCAGTCCAAGATCACT+TGG - chr4.1:1734584-1734603 MS.gene052674:intron 55.0%
TGGACTGCGGCAGCATATAG+GGG + chr4.1:1734576-1734595 None:intergenic 55.0%
!!! TTGCACGTGCGGCGCTTTTT+TGG - chr4.1:1736141-1736160 MS.gene052674:CDS 55.0%
ACATGGCTACGCGGAAAGGC+CGG - chr4.1:1734886-1734905 MS.gene052674:intron 60.0%
CCGCGTAGCCATGTGAAGAG+CGG + chr4.1:1734880-1734899 None:intergenic 60.0%
CCGCTCTTCACATGGCTACG+CGG - chr4.1:1734877-1734896 MS.gene052674:intron 60.0%
GCAGCTAAGCGTGGCCATCT+TGG - chr4.1:1734024-1734043 MS.gene052674:CDS 60.0%
GCTGCTTGTGCTTGCACGTG+CGG - chr4.1:1736130-1736149 MS.gene052674:CDS 60.0%
TGCGGCAGCATATAGGGGAC+TGG + chr4.1:1734571-1734590 None:intergenic 60.0%
!! GATTTTGAGTGCCTGGCCCG+AGG - chr4.1:1734518-1734537 MS.gene052674:CDS 60.0%
TACGCGGAAAGGCCGGTCAC+AGG - chr4.1:1734893-1734912 MS.gene052674:intron 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 1733706 1736420 1733706 ID=MS.gene052674
chr4.1 mRNA 1733706 1736420 1733706 ID=MS.gene052674.t1;Parent=MS.gene052674
chr4.1 exon 1736081 1736420 1736081 ID=MS.gene052674.t1.exon1;Parent=MS.gene052674.t1
chr4.1 CDS 1736081 1736420 1736081 ID=cds.MS.gene052674.t1;Parent=MS.gene052674.t1
chr4.1 exon 1735212 1735621 1735212 ID=MS.gene052674.t1.exon2;Parent=MS.gene052674.t1
chr4.1 CDS 1735212 1735621 1735212 ID=cds.MS.gene052674.t1;Parent=MS.gene052674.t1
chr4.1 exon 1733706 1734578 1733706 ID=MS.gene052674.t1.exon3;Parent=MS.gene052674.t1
chr4.1 CDS 1733706 1734578 1733706 ID=cds.MS.gene052674.t1;Parent=MS.gene052674.t1
Gene Sequence

>MS.gene052674

ATGGAGTCGAAGGGTCTGCGTTTCATGACCCACCAATCAATATTCACCACAGTTGGATCTGGAGACCTTGATGGGTTGAAGAAACTGTTAGAGAAGCTTAATAAGGAAGAAGATGGTGATAGAAGTAATGGGTCATCAACATCATCTTCATCTATGTCGGTTTCTGATGTTATGTCTCTTCAAAATGATCATGGTGAAACACCACTTTACATAGCTGCACACAATAATCTCAAGGAAGTTTTCACCTTTTTGATCAAATTATGTGATTTTGAAGTTGTCAAGATTCGTTCTAAGTCTGATATGAACGCTTTTCATGTTGCAGCTAAGCGTGGCCATCTTGGTATTCTACTTATTCACTTTTTTTCTTTTTTTCTTTTGTGTTTGGATATTGCTATTATTGGATGAACTGTGTTTCAGGGTTCTAACGTGTTATTATTGATCGATTCGTCCTTAATTGTAAAGTTCATTAATCATTTGAGTTCAATTACACGAAGTTTCAGGGTTGCTTAACTTCGAAATTTCAAAATACATGAAGTTTATTGTAAAATTCTATTGAAACTTTTGTTTTCTGATTTTGTTGTACATCTTTTAAATTTGGAATACAAAAGACTTAAAATTGAATTAGTGTTTTGTTAAATTCATGTGAAGATCTACTTACTAGGATAGAATTGGTGTGTAGATTAACTTACATTGCATAATTGTAATGGATAAACACCGATAGCAAATGTTACAATCTTGTTTGTAATGAATATATAATTAAGTTTTTCAATCATGATGTTAATGTCTAACTTTTTTCCAGATATTGTGAGGGAGATTTTGAGTGCCTGGCCCGAGGTTTGTAAGTTGTGTGACTCGACAAACACCAGTCCCCTATATGCTGCCGCAGTCCAAGATCACTTGGATGTGGTAAATGCTATTTTGGATGTTGATGTCAGCTCCATGTTTATAGTTAGAAAAAATGGGAAAACTGCACTACATAACGCTGTTAGGTATGGCGTCAACCGTATTGTGAAAGCACTTATTGTCCGTGAACCAGGAATAGTTTGCATCAAAGATAAAAAAGGTCAAACTGCGCTACATATGGCTGTCAAAGGACAGAGTACATCAGTGGTGGAGGAGATATTACAAGCTGATCCTACTATATTGAACGAACGAGATAAGAAGGGTAATACCGCTCTTCACATGGCTACGCGGAAAGGCCGGTCACAGGTTAAACTCATTCTCTTGAACCATATATAGTTGTAGATACTTTTTAATAATATATTGATTTCAGTTTTATTGTAAACTTAAACAAAGTTGTCAGTCCGAGATGATGGAAAAATCCAAGACTTCCTGGAATGAATGATAGGAAGGAAGTGAAATTATTTATCAGATTGTTATGAAAATATAAAAGATGCTTGAACTTTTTTCTATAGGTACTTAACAGTTGATACACAACATTAATGTAAGTCTAATGTGATACAATAATTTCATGTTAAACGTCGTTGGTCTTCAATAATTTAACACAACAAATTGTATATCGTAACTAATGTAGATTCTTTCGATGAATTTCTCCTCGTACGTTCCACGAGTTCTCAATACTAGTTAATTACAACTGGAAGCATCATATCACTGGTCTTGGATTTTAAAGCATAGGCTGTGTAAATTTAAGCTATGGTTTATAAGCAATTATATATGCCCTAAACTATCCTCATTCCTTATTAGTTGAGGCTCATTTATATACATAATGGAACAAAATGAATGCTTGTGTCCTTTCATAATTTGCTTGTCTTTTGTTGCAATAAATTCTTCCTCTCATTTTGTATTTTTGTTGTCTTTACTGACAAATGGTTCTTTTGTCAGATAGTGAGCTATTTGCTAAGCTATGCAGCTGTGGATGTTAATGCCATCAATAAGCAACAAGAAACAGCCTTGGATTTGGCAGATAAACTGCCATATGGATCGTCAGCTTTAGAAATCCAAGAAGCACTTTCAGAATATGGTGCTAAATATGCAAGACATGTTGGTAAAGTAGATGAAGCCATGGAACTTAAAAGAACAGTGAGTGATATAAAGCATGAGGTGCAGTCACAGCTCATACAAAACGAAAAAACTCGCCGACGAGTTTCCGGTATAGCTAAGGAATTGAAAAAACTTCATAGAGAAGCTGTTCAAAACACCATTAACTCTCTCACAGTGGTTGCTGTCCTTTTCGCCTCAATAGCATTCTTGGCTATATTCAATTTGCCGGGTCAATATATTATGAAAGGATCACATATAGGAGAATCTAACATTGCGGATCATGTTGGATTTCAAATTTTCTGTCTCTTGAATTCGACGTCTCTTTTCATTTCTCTTGCAGTTGTTGTTGTTCAAATCACTTTGGTAGCTTGGGACACAAGGGCTCAAAAGCAGATCGTGTCTGTTGTTAACAAGCTAATGTGGGCTGCTTGTGCTTGCACGTGCGGCGCTTTTTTGGCAATCGCTTTTGAGGTTGTTGGAAAGAAAAAATGGATGGCTATTACCATAACTGGTTTAGGGATACCTATTCTAGTTGGGACTCTGGCAAGCATGTGCTACTTTGTTTTTCGACAACATTTTGGCATTTTCCAAAGTGATTCGCAGAGACGCATCAAGAGAGCAAGTGGAAGCAAATCCTTCTCATGGTCTTACTCTGCAAATATATCAGATATAGACGAATACACTTCAGACATTGAGAAGATCTATGCTTTGTAA

Protein sequence

>MS.gene052674.t1

MESKGLRFMTHQSIFTTVGSGDLDGLKKLLEKLNKEEDGDRSNGSSTSSSSMSVSDVMSLQNDHGETPLYIAAHNNLKEVFTFLIKLCDFEVVKIRSKSDMNAFHVAAKRGHLDIVREILSAWPEVCKLCDSTNTSPLYAAAVQDHLDVVNAILDVDVSSMFIVRKNGKTALHNAVRYGVNRIVKALIVREPGIVCIKDKKGQTALHMAVKGQSTSVVEEILQADPTILNERDKKGNTALHMATRKGRSQIVSYLLSYAAVDVNAINKQQETALDLADKLPYGSSALEIQEALSEYGAKYARHVGKVDEAMELKRTVSDIKHEVQSQLIQNEKTRRRVSGIAKELKKLHREAVQNTINSLTVVAVLFASIAFLAIFNLPGQYIMKGSHIGESNIADHVGFQIFCLLNSTSLFISLAVVVVQITLVAWDTRAQKQIVSVVNKLMWAACACTCGAFLAIAFEVVGKKKWMAITITGLGIPILVGTLASMCYFVFRQHFGIFQSDSQRRIKRASGSKSFSWSYSANISDIDEYTSDIEKIYAL