AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052675


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052675.t1 MTR_8g105260 98.496 532 6 1 1 532 9 538 0.0 1077
MS.gene052675.t1 MTR_1g032100 76.923 533 112 4 1 532 9 531 0.0 850
MS.gene052675.t1 MTR_4g062100 46.563 451 227 5 48 488 61 507 4.17e-131 392
MS.gene052675.t1 MTR_2g096190 41.243 531 279 7 12 532 37 544 2.40e-129 388
MS.gene052675.t1 MTR_7g117620 43.813 493 257 8 45 532 69 546 2.46e-126 380
MS.gene052675.t1 MTR_7g100390 43.838 495 258 5 46 532 38 520 7.33e-126 378
MS.gene052675.t1 MTR_1g115575 41.333 525 288 6 13 532 84 593 1.09e-124 378
MS.gene052675.t1 MTR_7g100430 37.905 525 300 7 13 532 79 582 3.74e-102 319
MS.gene052675.t1 MTR_2g101310 24.943 441 256 9 92 462 138 573 1.04e-34 138
MS.gene052675.t1 MTR_2g101320 23.341 437 262 6 92 460 138 569 2.02e-24 107
MS.gene052675.t1 MTR_2g101320 22.131 244 154 4 61 269 5 247 6.11e-11 65.5
MS.gene052675.t1 MTR_2g101310 33.516 182 119 2 92 271 138 319 2.40e-23 103
MS.gene052675.t1 MTR_1g069110 24.759 311 213 5 126 415 50 360 1.31e-19 92.0
MS.gene052675.t1 MTR_5g085810 24.009 454 292 10 41 461 252 685 6.18e-16 81.6
MS.gene052675.t1 MTR_8g068990 24.340 341 209 8 95 414 47 359 6.89e-15 77.4
MS.gene052675.t1 MTR_8g467780 24.252 301 183 6 95 374 46 322 7.61e-15 77.4
MS.gene052675.t1 MTR_8g073260 24.138 290 183 5 95 372 46 310 7.75e-14 73.9
MS.gene052675.t1 MTR_8g039620 23.793 290 187 6 95 372 49 316 1.04e-13 73.6
MS.gene052675.t1 MTR_3g085830 27.706 231 142 6 61 268 144 372 2.02e-13 73.6
MS.gene052675.t1 MTR_5g085830 24.027 437 284 13 54 461 240 657 3.94e-13 72.4
MS.gene052675.t1 MTR_7g021090 26.316 209 134 3 95 291 44 244 1.66e-12 69.7
MS.gene052675.t1 MTR_8g072510 25.234 214 140 3 95 296 45 250 2.96e-12 69.3
MS.gene052675.t1 MTR_1g059930 25.676 296 171 9 95 372 47 311 4.31e-12 68.6
MS.gene052675.t1 MTR_7g451420 25.789 190 128 2 95 272 44 232 6.39e-12 67.0
MS.gene052675.t1 MTR_8g066670 22.636 349 216 8 95 414 1110 1433 8.03e-12 68.9
MS.gene052675.t1 MTR_7g099570 26.291 213 145 5 95 296 44 255 1.97e-11 67.0
MS.gene052675.t1 MTR_3g016210 22.000 300 188 5 95 372 45 320 4.06e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052675.t1 AT2G01680 69.418 533 153 5 1 532 9 532 0.0 733
MS.gene052675.t1 AT1G07710 45.040 504 259 8 39 532 48 543 6.32e-129 387
MS.gene052675.t1 AT1G07710 45.040 504 259 8 39 532 48 543 6.32e-129 387
MS.gene052675.t1 AT2G31820 44.828 493 258 7 46 532 178 662 7.86e-124 378
MS.gene052675.t1 AT5G60070 42.607 514 263 8 6 507 36 529 1.41e-122 371
MS.gene052675.t1 AT1G05640 44.646 495 257 8 46 532 142 627 1.11e-119 366
MS.gene052675.t1 AT5G02620 42.324 482 249 5 16 484 27 492 5.20e-116 353
MS.gene052675.t1 AT5G02620 42.324 482 249 5 16 484 27 492 5.20e-116 353
MS.gene052675.t1 AT5G02620 42.324 482 249 5 16 484 27 492 5.20e-116 353
MS.gene052675.t1 AT3G12360 39.847 522 296 6 13 532 73 578 3.40e-115 353
MS.gene052675.t1 AT3G12360 39.847 522 296 6 13 532 85 590 4.84e-115 353
MS.gene052675.t1 AT5G02620 40.594 505 248 6 16 484 27 515 4.07e-111 341
MS.gene052675.t1 AT5G02620 40.594 505 248 6 16 484 27 515 4.07e-111 341
MS.gene052675.t1 AT3G09550 39.655 522 300 8 13 532 106 614 8.11e-111 343
MS.gene052675.t1 AT3G09550 39.655 522 300 8 13 532 99 607 8.84e-111 342
MS.gene052675.t1 AT3G09550 39.655 522 300 8 13 532 99 607 8.84e-111 342
MS.gene052675.t1 AT5G54710 27.105 487 311 12 49 498 94 573 3.61e-39 151
MS.gene052675.t1 AT5G54710 27.105 487 311 12 49 498 139 618 5.98e-39 151
MS.gene052675.t1 AT1G34050 26.020 392 264 8 104 486 162 536 5.42e-34 135
MS.gene052675.t1 AT2G24600 22.078 462 310 9 48 477 96 539 2.59e-31 128
MS.gene052675.t1 AT2G24600 22.078 462 310 9 48 477 96 539 2.59e-31 128
MS.gene052675.t1 AT1G10340 22.326 430 290 10 48 451 96 507 1.45e-25 110
MS.gene052675.t1 AT1G10340 22.034 531 302 14 4 451 2 503 1.72e-24 107
MS.gene052675.t1 AT5G51160 27.566 341 201 10 123 430 44 371 4.72e-23 102
MS.gene052675.t1 AT4G03460 25.387 323 204 5 97 414 205 495 1.02e-22 102
MS.gene052675.t1 AT4G03460 25.387 323 204 5 97 414 237 527 1.27e-22 102
MS.gene052675.t1 AT1G03670 23.714 447 298 7 48 484 171 584 5.30e-22 100
MS.gene052675.t1 AT5G54700 24.716 352 206 10 155 497 26 327 1.11e-21 97.1
MS.gene052675.t1 AT4G03500 22.328 421 288 6 54 469 212 598 4.70e-21 97.4
MS.gene052675.t1 AT4G03500 22.824 425 281 7 54 469 189 575 5.66e-21 97.1
MS.gene052675.t1 AT4G03500 22.824 425 281 7 54 469 189 575 5.66e-21 97.1
MS.gene052675.t1 AT4G10720 25.073 343 217 10 95 421 40 358 1.26e-19 91.7
MS.gene052675.t1 AT4G10720 26.280 293 181 7 95 372 40 312 2.18e-19 91.3
MS.gene052675.t1 AT2G24600 23.416 363 234 8 48 384 96 440 5.25e-19 90.9
MS.gene052675.t1 AT2G24600 23.416 363 234 8 48 384 96 440 5.25e-19 90.9
MS.gene052675.t1 AT4G03490 22.768 448 313 11 41 468 118 552 4.04e-18 88.2
MS.gene052675.t1 AT4G03490 22.768 448 313 11 41 468 128 562 4.41e-18 88.2
MS.gene052675.t1 AT4G03490 23.235 439 284 10 41 468 118 514 7.19e-18 87.4
MS.gene052675.t1 AT4G03490 22.768 448 313 11 41 468 128 562 7.54e-18 87.4
MS.gene052675.t1 AT4G03490 23.235 439 284 10 41 468 108 504 7.75e-18 87.4
MS.gene052675.t1 AT5G50140 23.094 446 280 14 57 448 27 463 2.01e-17 85.9
MS.gene052675.t1 AT4G03440 22.613 398 284 7 97 490 311 688 3.81e-17 85.5
MS.gene052675.t1 AT4G03440 22.613 398 284 7 97 490 311 688 3.81e-17 85.5
MS.gene052675.t1 AT4G03440 22.613 398 284 7 97 490 318 695 3.88e-17 85.5
MS.gene052675.t1 AT4G03480 24.403 377 244 9 52 414 307 656 3.01e-16 82.4
MS.gene052675.t1 AT4G03480 24.403 377 244 9 52 414 310 659 3.44e-16 82.0
MS.gene052675.t1 AT5G54700 31.126 151 100 2 335 481 200 350 5.22e-16 81.3
MS.gene052675.t1 AT5G15500 23.393 389 208 9 92 416 2 364 9.69e-15 77.0
MS.gene052675.t1 AT4G14390 22.248 427 290 8 48 464 220 614 1.27e-14 77.4
MS.gene052675.t1 AT4G14390 22.973 370 252 6 97 464 295 633 1.39e-14 77.0
MS.gene052675.t1 AT5G54610 24.555 281 182 6 95 364 40 301 3.09e-14 75.1
MS.gene052675.t1 AT3G04140 28.125 288 175 7 6 268 106 386 5.48e-14 75.1
MS.gene052675.t1 AT3G04140 29.891 184 110 5 84 248 217 400 9.54e-11 65.1
MS.gene052675.t1 AT4G14390 23.352 364 243 7 103 464 305 634 6.41e-14 75.1
MS.gene052675.t1 AT1G14480 27.632 228 147 5 97 308 42 267 2.08e-13 72.8
MS.gene052675.t1 AT5G54620 25.806 186 126 2 95 268 40 225 8.69e-13 70.9
MS.gene052675.t1 AT1G14500 29.101 189 116 5 95 268 40 225 1.68e-11 66.6

Find 102 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATGTGGTAAATGCTATTT+TGG 0.194879 4.1:-1723568 MS.gene052675:CDS
AAAACTCGCCGACGAGTTTC+CGG 0.220434 4.1:-1722379 MS.gene052675:CDS
CATATTCTGAAAGTGCTTCT+TGG 0.231591 4.1:+1722509 None:intergenic
GCTATTACCATAACTGGTTT+AGG 0.239123 4.1:-1721971 MS.gene052675:CDS
TTTCGCCTCAATAGCATTCT+TGG 0.274513 4.1:-1722278 MS.gene052675:CDS
CAAGAAGCACTTTCAGAATA+TGG 0.283596 4.1:-1722508 MS.gene052675:CDS
TTGGACTGCGGCAGCATATA+GGG 0.294971 4.1:+1723599 None:intergenic
AACCACTGTGAGAGAGTTAA+TGG 0.303008 4.1:+1722309 None:intergenic
TGGATGGCTATTACCATAAC+TGG 0.303698 4.1:-1721977 MS.gene052675:CDS
CTATTACCATAACTGGTTTA+GGG 0.304499 4.1:-1721970 MS.gene052675:CDS
ATCACATAATTTGATCAAAA+AGG 0.308077 4.1:+1724224 None:intergenic
TGTTTCTTGTTGCTTATTGA+TGG 0.315784 4.1:+1722582 None:intergenic
CTTGGCTATATTCAATTTGC+CGG 0.319423 4.1:-1722260 MS.gene052675:CDS
CTTGGACTGCGGCAGCATAT+AGG 0.333630 4.1:+1723598 None:intergenic
TCTTTGATGCAAACTATTCC+TGG 0.336681 4.1:+1723435 None:intergenic
ACAAGAAACAGCCTTGGATT+TGG 0.348845 4.1:-1722569 MS.gene052675:CDS
TTCAAATCACTTTGGTAGCT+TGG 0.363305 4.1:-1722117 MS.gene052675:CDS
TTACCACATCCAAGTGATCT+TGG 0.370317 4.1:+1723580 None:intergenic
CTGCACTACATAACGCTGTT+AGG 0.375628 4.1:-1723500 MS.gene052675:CDS
GTTGGATCTGGAGACCTTGA+TGG 0.415237 4.1:-1724417 MS.gene052675:CDS
TCAAATCACTTTGGTAGCTT+GGG 0.417875 4.1:-1722116 MS.gene052675:CDS
TTTCAATTCCTTAGCTATAC+CGG 0.426970 4.1:+1722360 None:intergenic
AGGTCAAACTGCGCTACATA+TGG 0.431611 4.1:-1723406 MS.gene052675:CDS
TAGGGATACCTATTCTAGTT+GGG 0.436179 4.1:-1721952 MS.gene052675:CDS
TCTCGTTCGTTCAATATAGT+AGG 0.439653 4.1:+1723333 None:intergenic
CAATAAGTGCTTTCACAATA+CGG 0.440583 4.1:+1723466 None:intergenic
ACTGTTAGAGAAGCTTAATA+AGG 0.441562 4.1:-1724385 MS.gene052675:CDS
ATATTCACCACAGTTGGATC+TGG 0.453733 4.1:-1724429 MS.gene052675:CDS
TTAGGGATACCTATTCTAGT+TGG 0.455818 4.1:-1721953 MS.gene052675:CDS
TGCGTCTCTGCGAATCACTT+TGG 0.457508 4.1:+1721879 None:intergenic
GAAGATGGTGATAGAAGTAA+TGG 0.458453 4.1:-1724360 MS.gene052675:CDS
AGGTATCCCTAAACCAGTTA+TGG 0.460403 4.1:+1721964 None:intergenic
GCAGCTAAGCGTGGCCATCT+TGG 0.468196 4.1:-1724150 MS.gene052675:intron
ATTATGAAAGGATCACATAT+AGG 0.475016 4.1:-1722229 MS.gene052675:CDS
AAGCTTAATAAGGAAGAAGA+TGG 0.476184 4.1:-1724375 MS.gene052675:CDS
GCACTTATTGTCCGTGAACC+AGG 0.483840 4.1:-1723453 MS.gene052675:CDS
ATTGAACGAACGAGATAAGA+AGG 0.492542 4.1:-1723325 MS.gene052675:CDS
ACAGTTTCTTCAACCCATCA+AGG 0.495729 4.1:+1724403 None:intergenic
TGCAAACTATTCCTGGTTCA+CGG 0.500786 4.1:+1723442 None:intergenic
TTGGCAGATAAACTGCCATA+TGG 0.504776 4.1:-1722550 MS.gene052675:CDS
AGACGCATCAAGAGAGCAAG+TGG 0.505968 4.1:-1721863 MS.gene052675:CDS
CTTTGGTAGCTTGGGACACA+AGG 0.509015 4.1:-1722108 MS.gene052675:CDS
TCTAAAGCTGACGATCCATA+TGG 0.511646 4.1:+1722535 None:intergenic
CAATCAATATTCACCACAGT+TGG 0.516406 4.1:-1724435 MS.gene052675:CDS
GCCAGAGTCCCAACTAGAAT+AGG 0.516542 4.1:+1721944 None:intergenic
CCGGGTCAATATATTATGAA+AGG 0.520442 4.1:-1722241 MS.gene052675:CDS
TACGCGGAAAGGCCGGTCAC+AGG 0.521929 4.1:-1723280 MS.gene052675:intron
CTTCACATGGCTACGCGGAA+AGG 0.523901 4.1:-1723291 MS.gene052675:CDS
CTACATAACGCTGTTAGGTA+TGG 0.525429 4.1:-1723495 MS.gene052675:CDS
GTCACACAACTTACAAACCT+CGG 0.525962 4.1:+1723638 None:intergenic
CTGTTGTTAACAAGCTAATG+TGG 0.526218 4.1:-1722066 MS.gene052675:CDS
AGAATGCTATTGAGGCGAAA+AGG 0.530984 4.1:+1722281 None:intergenic
AACATCATCTTCATCTATGT+CGG 0.533622 4.1:-1724331 MS.gene052675:CDS
ACATGGCTACGCGGAAAGGC+CGG 0.534860 4.1:-1723287 MS.gene052675:CDS
ACCTATTCTAGTTGGGACTC+TGG 0.537549 4.1:-1721945 MS.gene052675:CDS
ACAGAGTACATCAGTGGTGG+AGG 0.543153 4.1:-1723373 MS.gene052675:CDS
TTGGCTATATTCAATTTGCC+GGG 0.547911 4.1:-1722259 MS.gene052675:CDS
TAAGCAACAAGAAACAGCCT+TGG 0.552301 4.1:-1722575 MS.gene052675:CDS
CAACTTACAAACCTCGGGCC+AGG 0.555562 4.1:+1723644 None:intergenic
TATAGCCAAGAATGCTATTG+AGG 0.559760 4.1:+1722273 None:intergenic
TCTAACATTGCGGATCATGT+TGG 0.560863 4.1:-1722202 MS.gene052675:CDS
GCTAAATATGCAAGACATGT+TGG 0.561894 4.1:-1722484 MS.gene052675:CDS
GTGGAAGCAAATCCTTCTCA+TGG 0.564022 4.1:-1721844 MS.gene052675:CDS
TCACACAACTTACAAACCTC+GGG 0.565097 4.1:+1723639 None:intergenic
TGCGGCAGCATATAGGGGAC+TGG 0.565490 4.1:+1723605 None:intergenic
AAGATGGTGATAGAAGTAAT+GGG 0.566107 4.1:-1724359 MS.gene052675:CDS
ATCCAAGTGATCTTGGACTG+CGG 0.566122 4.1:+1723587 None:intergenic
TTGGATCTGGAGACCTTGAT+GGG 0.566977 4.1:-1724416 MS.gene052675:CDS
TGCCGCAGTCCAAGATCACT+TGG 0.567594 4.1:-1723589 MS.gene052675:CDS
TGTTGTTGTTCAAATCACTT+TGG 0.570912 4.1:-1722125 MS.gene052675:CDS
TGGACTGCGGCAGCATATAG+GGG 0.571980 4.1:+1723600 None:intergenic
CAACTGTGGTGAATATTGAT+TGG 0.577431 4.1:+1724436 None:intergenic
TAGCTATACCGGAAACTCGT+CGG 0.577902 4.1:+1722371 None:intergenic
CAGTTTATCTGCCAAATCCA+AGG 0.577959 4.1:+1722558 None:intergenic
ATGTCTCTTCAAAATGATCA+TGG 0.578765 4.1:-1724297 MS.gene052675:CDS
GCGCTACATATGGCTGTCAA+AGG 0.582666 4.1:-1723396 MS.gene052675:CDS
GAATGAGTTTAACCTGTGAC+CGG 0.583506 4.1:+1723268 None:intergenic
GGGTAATACCGCTCTTCACA+TGG 0.583634 4.1:-1723304 MS.gene052675:CDS
CCTTTCATAATATATTGACC+CGG 0.584046 4.1:+1722241 None:intergenic
TTTCATGTTGCAGCTAAGCG+TGG 0.587939 4.1:-1724159 MS.gene052675:CDS
TTTGCTAAGCTATGCAGCTG+TGG 0.589326 4.1:-1722614 MS.gene052675:CDS
GCTGCTTGTGCTTGCACGTG+CGG 0.591233 4.1:-1722043 MS.gene052675:CDS
ACGAGTTTCCGGTATAGCTA+AGG 0.593408 4.1:-1722368 MS.gene052675:CDS
CTGTGGTGAATATTGATTGG+TGG 0.599501 4.1:+1724439 None:intergenic
AGCTGCACACAATAATCTCA+AGG 0.604525 4.1:-1724256 MS.gene052675:CDS
AGTCCAAGATCACTTGGATG+TGG 0.606081 4.1:-1723583 MS.gene052675:CDS
TGGTAAAGTAGATGAAGCCA+TGG 0.615814 4.1:-1722464 MS.gene052675:CDS
CCGCTCTTCACATGGCTACG+CGG 0.621597 4.1:-1723296 MS.gene052675:CDS
TTGAACGAACGAGATAAGAA+GGG 0.622382 4.1:-1723324 MS.gene052675:CDS
TGTGGTGAATATTGATTGGT+GGG 0.623793 4.1:+1724440 None:intergenic
TTGTGTGCAGCTATGTAAAG+TGG 0.624900 4.1:+1724267 None:intergenic
GAATAAGTAGAATACCAAGA+TGG 0.625558 4.1:+1724136 None:intergenic
TGTTGTTAACAAGCTAATGT+GGG 0.633610 4.1:-1722065 MS.gene052675:CDS
TGCAGAGTAAGACCATGAGA+AGG 0.634865 4.1:+1721832 None:intergenic
TTTGGTAGCTTGGGACACAA+GGG 0.645817 4.1:-1722107 MS.gene052675:CDS
AGGACAGAGTACATCAGTGG+TGG 0.646873 4.1:-1723376 MS.gene052675:CDS
AGTGAGTGATATAAAGCATG+AGG 0.658021 4.1:-1722428 MS.gene052675:CDS
CCGCGTAGCCATGTGAAGAG+CGG 0.680358 4.1:+1723296 None:intergenic
CAAAGGACAGAGTACATCAG+TGG 0.688738 4.1:-1723379 MS.gene052675:CDS
TATAGGAGAATCTAACATTG+CGG 0.704490 4.1:-1722212 MS.gene052675:CDS
CACCATTAACTCTCTCACAG+TGG 0.722741 4.1:-1722311 MS.gene052675:CDS
AAGGTCTCCAGATCCAACTG+TGG 0.733074 4.1:+1724422 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGTTTATAGTTAGAAAAAA+TGG - chr4.1:1722691-1722710 MS.gene052675:intron 15.0%
!! ATTAATGAACTTTACAATTA+AGG + chr4.1:1722203-1722222 None:intergenic 15.0%
!! TGTTTATAGTTAGAAAAAAT+GGG - chr4.1:1722692-1722711 MS.gene052675:intron 15.0%
!!! ATTTTTTCTAACTATAAACA+TGG + chr4.1:1722692-1722711 None:intergenic 15.0%
!! ATCACATAATTTGATCAAAA+AGG + chr4.1:1721998-1722017 None:intergenic 20.0%
!!! AAAGTATCTACAACTATATA+TGG + chr4.1:1722984-1723003 None:intergenic 20.0%
!!! TGTTGTACATCTTTTAAATT+TGG - chr4.1:1722327-1722346 MS.gene052675:CDS 20.0%
!!! TTCTTTTTTTCTTTTGTGTT+TGG - chr4.1:1722114-1722133 MS.gene052675:CDS 20.0%
! AAAGACAAGCAAATTATGAA+AGG + chr4.1:1723505-1723524 None:intergenic 25.0%
! AGGCTCATTTATATACATAA+TGG - chr4.1:1723459-1723478 MS.gene052675:CDS 25.0%
! ATTATGAAAGGATCACATAT+AGG - chr4.1:1723990-1724009 MS.gene052675:intron 25.0%
! CAACAAAAATACAAAATGAG+AGG + chr4.1:1723545-1723564 None:intergenic 25.0%
! CAATACTAGTTAATTACAAC+TGG - chr4.1:1723327-1723346 MS.gene052675:CDS 25.0%
! CTTACATTGCATAATTGTAA+TGG - chr4.1:1722436-1722455 MS.gene052675:CDS 25.0%
! GTTTGCATCAAAGATAAAAA+AGG - chr4.1:1722793-1722812 MS.gene052675:intron 25.0%
!! TGTTTGGATATTGCTATTAT+TGG - chr4.1:1722130-1722149 MS.gene052675:CDS 25.0%
!!! AAGATTGTAACATTTGCTAT+CGG + chr4.1:1722469-1722488 None:intergenic 25.0%
!!! ATGCTTGAACTTTTTTCTAT+AGG - chr4.1:1723145-1723164 MS.gene052675:intron 25.0%
!!! TTTGTTTTTCGACAACATTT+TGG - chr4.1:1724311-1724330 MS.gene052675:CDS 25.0%
AACATCATCTTCATCTATGT+CGG - chr4.1:1721888-1721907 MS.gene052675:CDS 30.0%
AAGATGGTGATAGAAGTAAT+GGG - chr4.1:1721860-1721879 MS.gene052675:CDS 30.0%
AAGCTTAATAAGGAAGAAGA+TGG - chr4.1:1721844-1721863 MS.gene052675:CDS 30.0%
AATTTCATGTTAAACGTCGT+TGG - chr4.1:1723217-1723236 MS.gene052675:intron 30.0%
ACTGTTAGAGAAGCTTAATA+AGG - chr4.1:1721834-1721853 MS.gene052675:CDS 30.0%
AGGTTGTTGGAAAGAAAAAA+TGG - chr4.1:1724222-1724241 MS.gene052675:CDS 30.0%
ATAAGGAATGAGGATAGTTT+AGG + chr4.1:1723433-1723452 None:intergenic 30.0%
ATGTCTCTTCAAAATGATCA+TGG - chr4.1:1721922-1721941 MS.gene052675:CDS 30.0%
CAATAAGTGCTTTCACAATA+CGG + chr4.1:1722756-1722775 None:intergenic 30.0%
CCTTTCATAATATATTGACC+CGG + chr4.1:1723981-1724000 None:intergenic 30.0%
GAATAAGTAGAATACCAAGA+TGG + chr4.1:1722086-1722105 None:intergenic 30.0%
TAAATGAGCCTCAACTAATA+AGG + chr4.1:1723450-1723469 None:intergenic 30.0%
TAAGGAATGAGGATAGTTTA+GGG + chr4.1:1723432-1723451 None:intergenic 30.0%
TATAGGAGAATCTAACATTG+CGG - chr4.1:1724007-1724026 MS.gene052675:intron 30.0%
TCTACTTACTAGGATAGAAT+TGG - chr4.1:1722401-1722420 MS.gene052675:CDS 30.0%
TGTTGGAAAGAAAAAATGGA+TGG - chr4.1:1724226-1724245 MS.gene052675:CDS 30.0%
TGTTGTTAACAAGCTAATGT+GGG - chr4.1:1724154-1724173 MS.gene052675:CDS 30.0%
TTCAATTACACGAAGTTTCA+GGG - chr4.1:1722231-1722250 MS.gene052675:CDS 30.0%
TTGTTGTCTTTACTGACAAA+TGG - chr4.1:1723559-1723578 MS.gene052675:CDS 30.0%
TTTCAATTCCTTAGCTATAC+CGG + chr4.1:1723862-1723881 None:intergenic 30.0%
! CTATTACCATAACTGGTTTA+GGG - chr4.1:1724249-1724268 MS.gene052675:CDS 30.0%
! TGTTGTTGTTCAAATCACTT+TGG - chr4.1:1724094-1724113 MS.gene052675:intron 30.0%
! TGTTTCTTGTTGCTTATTGA+TGG + chr4.1:1723640-1723659 None:intergenic 30.0%
!!! ACTTTTTTCCAGATATTGTG+AGG - chr4.1:1722539-1722558 MS.gene052675:CDS 30.0%
!!! CTTTTTTCCAGATATTGTGA+GGG - chr4.1:1722540-1722559 MS.gene052675:CDS 30.0%
AAAATCTCCCTCACAATATC+TGG + chr4.1:1722550-1722569 None:intergenic 35.0%
AGTGAGTGATATAAAGCATG+AGG - chr4.1:1723791-1723810 MS.gene052675:intron 35.0%
ATTGAACGAACGAGATAAGA+AGG - chr4.1:1722894-1722913 MS.gene052675:intron 35.0%
ATTGGATGAACTGTGTTTCA+GGG - chr4.1:1722148-1722167 MS.gene052675:CDS 35.0%
CAACTGTGGTGAATATTGAT+TGG + chr4.1:1721786-1721805 None:intergenic 35.0%
CAATCAATATTCACCACAGT+TGG - chr4.1:1721784-1721803 MS.gene052675:CDS 35.0%
CATGTGAAGATCTACTTACT+AGG - chr4.1:1722391-1722410 MS.gene052675:CDS 35.0%
CCGGGTCAATATATTATGAA+AGG - chr4.1:1723978-1723997 MS.gene052675:intron 35.0%
CTGTTGTTAACAAGCTAATG+TGG - chr4.1:1724153-1724172 MS.gene052675:CDS 35.0%
CTTGGCTATATTCAATTTGC+CGG - chr4.1:1723959-1723978 MS.gene052675:intron 35.0%
GAAGATGGTGATAGAAGTAA+TGG - chr4.1:1721859-1721878 MS.gene052675:CDS 35.0%
GCTAAATATGCAAGACATGT+TGG - chr4.1:1723735-1723754 MS.gene052675:intron 35.0%
GGCTGTGTAAATTTAAGCTA+TGG - chr4.1:1723386-1723405 MS.gene052675:CDS 35.0%
GTTCAATTACACGAAGTTTC+AGG - chr4.1:1722230-1722249 MS.gene052675:CDS 35.0%
TATAGCCAAGAATGCTATTG+AGG + chr4.1:1723949-1723968 None:intergenic 35.0%
TATTGGATGAACTGTGTTTC+AGG - chr4.1:1722147-1722166 MS.gene052675:CDS 35.0%
TCCTCATTCCTTATTAGTTG+AGG - chr4.1:1723439-1723458 MS.gene052675:CDS 35.0%
TCTCGTTCGTTCAATATAGT+AGG + chr4.1:1722889-1722908 None:intergenic 35.0%
TCTTTGATGCAAACTATTCC+TGG + chr4.1:1722787-1722806 None:intergenic 35.0%
TTAGGGATACCTATTCTAGT+TGG - chr4.1:1724266-1724285 MS.gene052675:CDS 35.0%
TTGAACGAACGAGATAAGAA+GGG - chr4.1:1722895-1722914 MS.gene052675:intron 35.0%
TTGGCTATATTCAATTTGCC+GGG - chr4.1:1723960-1723979 MS.gene052675:intron 35.0%
! CTTGGATTTTTCCATCATCT+CGG + chr4.1:1723059-1723078 None:intergenic 35.0%
! GCTATTACCATAACTGGTTT+AGG - chr4.1:1724248-1724267 MS.gene052675:CDS 35.0%
! TAACTAGTATTGAGAACTCG+TGG + chr4.1:1723319-1723338 None:intergenic 35.0%
! TAGGGATACCTATTCTAGTT+GGG - chr4.1:1724267-1724286 MS.gene052675:CDS 35.0%
! TCAAATCACTTTGGTAGCTT+GGG - chr4.1:1724103-1724122 MS.gene052675:intron 35.0%
! TGTGGTGAATATTGATTGGT+GGG + chr4.1:1721782-1721801 None:intergenic 35.0%
! TTCAAATCACTTTGGTAGCT+TGG - chr4.1:1724102-1724121 MS.gene052675:intron 35.0%
!! CAAGAAGCACTTTCAGAATA+TGG - chr4.1:1723711-1723730 MS.gene052675:intron 35.0%
!! CATATTCTGAAAGTGCTTCT+TGG + chr4.1:1723713-1723732 None:intergenic 35.0%
!! GGATGTGGTAAATGCTATTT+TGG - chr4.1:1722651-1722670 MS.gene052675:intron 35.0%
!!! CACTGTTCTTTTAAGTTCCA+TGG + chr4.1:1723775-1723794 None:intergenic 35.0%
!!! GGTCTTGGATTTTAAAGCAT+AGG - chr4.1:1723365-1723384 MS.gene052675:CDS 35.0%
!!! TTTTTTGGCAATCGCTTTTG+AGG - chr4.1:1724202-1724221 MS.gene052675:CDS 35.0%
AACCACTGTGAGAGAGTTAA+TGG + chr4.1:1723913-1723932 None:intergenic 40.0%
ACAAGAAACAGCCTTGGATT+TGG - chr4.1:1723650-1723669 MS.gene052675:CDS 40.0%
ACAGTTTCTTCAACCCATCA+AGG + chr4.1:1721819-1721838 None:intergenic 40.0%
AGAATGCTATTGAGGCGAAA+AGG + chr4.1:1723941-1723960 None:intergenic 40.0%
AGCTGCACACAATAATCTCA+AGG - chr4.1:1721963-1721982 MS.gene052675:CDS 40.0%
AGGTATCCCTAAACCAGTTA+TGG + chr4.1:1724258-1724277 None:intergenic 40.0%
ATATTCACCACAGTTGGATC+TGG - chr4.1:1721790-1721809 MS.gene052675:CDS 40.0%
CAGTTTATCTGCCAAATCCA+AGG + chr4.1:1723664-1723683 None:intergenic 40.0%
CTACATAACGCTGTTAGGTA+TGG - chr4.1:1722724-1722743 MS.gene052675:intron 40.0%
GAATGAGTTTAACCTGTGAC+CGG + chr4.1:1722954-1722973 None:intergenic 40.0%
GACTTCCTGGAATGAATGAT+AGG - chr4.1:1723078-1723097 MS.gene052675:intron 40.0%
GCCTCAACTAATAAGGAATG+AGG + chr4.1:1723443-1723462 None:intergenic 40.0%
GTCACACAACTTACAAACCT+CGG + chr4.1:1722584-1722603 None:intergenic 40.0%
TAAGCAACAAGAAACAGCCT+TGG - chr4.1:1723644-1723663 MS.gene052675:CDS 40.0%
TCACACAACTTACAAACCTC+GGG + chr4.1:1722583-1722602 None:intergenic 40.0%
TCATTCATTCCAGGAAGTCT+TGG + chr4.1:1723077-1723096 None:intergenic 40.0%
TCCTGGAATGAATGATAGGA+AGG - chr4.1:1723082-1723101 MS.gene052675:intron 40.0%
TCCTTCCTATCATTCATTCC+AGG + chr4.1:1723086-1723105 None:intergenic 40.0%
TCTAACATTGCGGATCATGT+TGG - chr4.1:1724017-1724036 MS.gene052675:intron 40.0%
TGCAAACTATTCCTGGTTCA+CGG + chr4.1:1722780-1722799 None:intergenic 40.0%
TGGAAAAATCCAAGACTTCC+TGG - chr4.1:1723065-1723084 MS.gene052675:intron 40.0%
TGGATGGCTATTACCATAAC+TGG - chr4.1:1724242-1724261 MS.gene052675:CDS 40.0%
TGGTAAAGTAGATGAAGCCA+TGG - chr4.1:1723755-1723774 MS.gene052675:intron 40.0%
TTACCACATCCAAGTGATCT+TGG + chr4.1:1722642-1722661 None:intergenic 40.0%
TTGGCAGATAAACTGCCATA+TGG - chr4.1:1723669-1723688 MS.gene052675:CDS 40.0%
TTGTGTGCAGCTATGTAAAG+TGG + chr4.1:1721955-1721974 None:intergenic 40.0%
TTTCGCCTCAATAGCATTCT+TGG - chr4.1:1723941-1723960 MS.gene052675:intron 40.0%
! AAGCATCATATCACTGGTCT+TGG - chr4.1:1723350-1723369 MS.gene052675:CDS 40.0%
! CTGTGGTGAATATTGATTGG+TGG + chr4.1:1721783-1721802 None:intergenic 40.0%
! TCTAAAGCTGACGATCCATA+TGG + chr4.1:1723687-1723706 None:intergenic 40.0%
!! AACTGGAAGCATCATATCAC+TGG - chr4.1:1723344-1723363 MS.gene052675:CDS 40.0%
AAGTTGTCAGTCCGAGATGA+TGG - chr4.1:1723045-1723064 MS.gene052675:intron 45.0%
ACGAGTTTCCGGTATAGCTA+AGG - chr4.1:1723851-1723870 MS.gene052675:intron 45.0%
AGGTCAAACTGCGCTACATA+TGG - chr4.1:1722813-1722832 MS.gene052675:intron 45.0%
AGTCCAAGATCACTTGGATG+TGG - chr4.1:1722636-1722655 MS.gene052675:intron 45.0%
ATCCAAGTGATCTTGGACTG+CGG + chr4.1:1722635-1722654 None:intergenic 45.0%
CAAAGGACAGAGTACATCAG+TGG - chr4.1:1722840-1722859 MS.gene052675:intron 45.0%
CACCATTAACTCTCTCACAG+TGG - chr4.1:1723908-1723927 MS.gene052675:intron 45.0%
CTGCACTACATAACGCTGTT+AGG - chr4.1:1722719-1722738 MS.gene052675:intron 45.0%
GTGGAAGCAAATCCTTCTCA+TGG - chr4.1:1724375-1724394 MS.gene052675:CDS 45.0%
TAGCTATACCGGAAACTCGT+CGG + chr4.1:1723851-1723870 None:intergenic 45.0%
TGCAGAGTAAGACCATGAGA+AGG + chr4.1:1724390-1724409 None:intergenic 45.0%
TTGGATCTGGAGACCTTGAT+GGG - chr4.1:1721803-1721822 MS.gene052675:CDS 45.0%
TTTCATGTTGCAGCTAAGCG+TGG - chr4.1:1722060-1722079 MS.gene052675:CDS 45.0%
TTTGCTAAGCTATGCAGCTG+TGG - chr4.1:1723605-1723624 MS.gene052675:CDS 45.0%
! ACCTATTCTAGTTGGGACTC+TGG - chr4.1:1724274-1724293 MS.gene052675:CDS 45.0%
! TTTGGTAGCTTGGGACACAA+GGG - chr4.1:1724112-1724131 MS.gene052675:intron 45.0%
!!! GCAATCGCTTTTGAGGTTGT+TGG - chr4.1:1724209-1724228 MS.gene052675:CDS 45.0%
AAAACTCGCCGACGAGTTTC+CGG - chr4.1:1723840-1723859 MS.gene052675:intron 50.0%
AAGGTCTCCAGATCCAACTG+TGG + chr4.1:1721800-1721819 None:intergenic 50.0%
ACAGAGTACATCAGTGGTGG+AGG - chr4.1:1722846-1722865 MS.gene052675:intron 50.0%
AGACGCATCAAGAGAGCAAG+TGG - chr4.1:1724356-1724375 MS.gene052675:CDS 50.0%
AGGACAGAGTACATCAGTGG+TGG - chr4.1:1722843-1722862 MS.gene052675:intron 50.0%
GCACTTATTGTCCGTGAACC+AGG - chr4.1:1722766-1722785 MS.gene052675:intron 50.0%
GCCAGAGTCCCAACTAGAAT+AGG + chr4.1:1724278-1724297 None:intergenic 50.0%
GCGCTACATATGGCTGTCAA+AGG - chr4.1:1722823-1722842 MS.gene052675:intron 50.0%
GGGTAATACCGCTCTTCACA+TGG - chr4.1:1722915-1722934 MS.gene052675:intron 50.0%
GTTGGATCTGGAGACCTTGA+TGG - chr4.1:1721802-1721821 MS.gene052675:CDS 50.0%
TGCGTCTCTGCGAATCACTT+TGG + chr4.1:1724343-1724362 None:intergenic 50.0%
TTGGACTGCGGCAGCATATA+GGG + chr4.1:1722623-1722642 None:intergenic 50.0%
! CTTTGGTAGCTTGGGACACA+AGG - chr4.1:1724111-1724130 MS.gene052675:intron 50.0%
!! TGAGGGAGATTTTGAGTGCC+TGG - chr4.1:1722557-1722576 MS.gene052675:CDS 50.0%
CAACTTACAAACCTCGGGCC+AGG + chr4.1:1722578-1722597 None:intergenic 55.0%
CTTCACATGGCTACGCGGAA+AGG - chr4.1:1722928-1722947 MS.gene052675:intron 55.0%
CTTGGACTGCGGCAGCATAT+AGG + chr4.1:1722624-1722643 None:intergenic 55.0%
GAGAACTCGTGGAACGTACG+AGG + chr4.1:1723308-1723327 None:intergenic 55.0%
TGCCGCAGTCCAAGATCACT+TGG - chr4.1:1722630-1722649 MS.gene052675:intron 55.0%
TGGACTGCGGCAGCATATAG+GGG + chr4.1:1722622-1722641 None:intergenic 55.0%
!!! TTGCACGTGCGGCGCTTTTT+TGG - chr4.1:1724187-1724206 MS.gene052675:CDS 55.0%
ACATGGCTACGCGGAAAGGC+CGG - chr4.1:1722932-1722951 MS.gene052675:intron 60.0%
CCGCGTAGCCATGTGAAGAG+CGG + chr4.1:1722926-1722945 None:intergenic 60.0%
CCGCTCTTCACATGGCTACG+CGG - chr4.1:1722923-1722942 MS.gene052675:intron 60.0%
GCAGCTAAGCGTGGCCATCT+TGG - chr4.1:1722069-1722088 MS.gene052675:CDS 60.0%
GCTGCTTGTGCTTGCACGTG+CGG - chr4.1:1724176-1724195 MS.gene052675:CDS 60.0%
TGCGGCAGCATATAGGGGAC+TGG + chr4.1:1722617-1722636 None:intergenic 60.0%
!! GATTTTGAGTGCCTGGCCCG+AGG - chr4.1:1722564-1722583 MS.gene052675:CDS 60.0%
TACGCGGAAAGGCCGGTCAC+AGG - chr4.1:1722939-1722958 MS.gene052675:intron 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 1721775 1724466 1721775 ID=MS.gene052675
chr4.1 mRNA 1721775 1724466 1721775 ID=MS.gene052675.t1;Parent=MS.gene052675
chr4.1 exon 1724151 1724466 1724151 ID=MS.gene052675.t1.exon1;Parent=MS.gene052675.t1
chr4.1 CDS 1724151 1724466 1724151 ID=cds.MS.gene052675.t1;Parent=MS.gene052675.t1
chr4.1 exon 1723281 1723690 1723281 ID=MS.gene052675.t1.exon2;Parent=MS.gene052675.t1
chr4.1 CDS 1723281 1723690 1723281 ID=cds.MS.gene052675.t1;Parent=MS.gene052675.t1
chr4.1 exon 1721775 1722647 1721775 ID=MS.gene052675.t1.exon3;Parent=MS.gene052675.t1
chr4.1 CDS 1721775 1722647 1721775 ID=cds.MS.gene052675.t1;Parent=MS.gene052675.t1
Gene Sequence

>MS.gene052675

ATGACCCACCAATCAATATTCACCACAGTTGGATCTGGAGACCTTGATGGGTTGAAGAAACTGTTAGAGAAGCTTAATAAGGAAGAAGATGGTGATAGAAGTAATGGGTCATCAACATCATCTTCATCTATGTCGGTTTCTGATGTTATGTCTCTTCAAAATGATCATGGTGAAACACCACTTTACATAGCTGCACACAATAATCTCAAGGAAGTTTTCACCTTTTTGATCAAATTATGTGATTTTGAAGTTGTCAAGATTCGTTCTAAGTCTGATATGAACGCTTTTCATGTTGCAGCTAAGCGTGGCCATCTTGGTATTCTACTTATTCACTTTTTTTTCTTTTTTTCTTTTGTGTTTGGATATTGCTATTATTGGATGAACTGTGTTTCAGGGTTCTAACGTGTTATTATTGATCGATTCGTCCTTAATTGTAAAGTTCATTAATCATTTGAGTTCAATTACACGAAGTTTCAGGGTTGCTTAACTTCGAAATTTCAAAATACATGAAGTTTATTGTAAAATTCTATTGAAACTTTTGTTTTCTGATTTTGTTGTACATCTTTTAAATTTGGAATACAAAAGACTTAAAATTGAATTAGTGTTTTGTTAAATTCATGTGAAGATCTACTTACTAGGATAGAATTGGTGTGTAGATTAACTTACATTGCATAATTGTAATGGATAAACACCGATAGCAAATGTTACAATCTTGTTTGTAATGAATATATAATTAAGTTTTTCAATCATGATGTTAATGTCTAACTTTTTTCCAGATATTGTGAGGGAGATTTTGAGTGCCTGGCCCGAGGTTTGTAAGTTGTGTGACTCGACAAACACCAGTCCCCTATATGCTGCCGCAGTCCAAGATCACTTGGATGTGGTAAATGCTATTTTGGATGTTGATGTCAGCTCCATGTTTATAGTTAGAAAAAATGGGAAAACTGCACTACATAACGCTGTTAGGTATGGCGTCAACCGTATTGTGAAAGCACTTATTGTCCGTGAACCAGGAATAGTTTGCATCAAAGATAAAAAAGGTCAAACTGCGCTACATATGGCTGTCAAAGGACAGAGTACATCAGTGGTGGAGGAGATATTACAAGCTGATCCTACTATATTGAACGAACGAGATAAGAAGGGTAATACCGCTCTTCACATGGCTACGCGGAAAGGCCGGTCACAGGTTAAACTCATTCTCTTGAACCATATATAGTTGTAGATACTTTTTAATAATATATTGATTTCAGTTTTATTGTAAACTTAAACAAAGTTGTCAGTCCGAGATGATGGAAAAATCCAAGACTTCCTGGAATGAATGATAGGAAGGAAGTGAAATTATTTATCAGATTGTTATGAAAATATAAAAGATGCTTGAACTTTTTTCTATAGGTACTTAACAGTTGATACACAACATTAATGTAAGTCTAATGTGATACAATAATTTCATGTTAAACGTCGTTGGTCTTCAATAATTTAACACAACAAATTGTATATCGTAACTAATGTAGATTCTTTCGATGAATTTCTCCTCGTACGTTCCACGAGTTCTCAATACTAGTTAATTACAACTGGAAGCATCATATCACTGGTCTTGGATTTTAAAGCATAGGCTGTGTAAATTTAAGCTATGGTTTATAAGCAATTATATATGCCCTAAACTATCCTCATTCCTTATTAGTTGAGGCTCATTTATATACATAATGGAACAAAATGAATGCTTGTGTCCTTTCATAATTTGCTTGTCTTTTGTTGCAATAAATTCTTCCTCTCATTTTGTATTTTTGTTGTCTTTACTGACAAATGGTTCTTTTGTCAGATAGTGAGCTATTTGCTAAGCTATGCAGCTGTGGATGTTAATGCCATCAATAAGCAACAAGAAACAGCCTTGGATTTGGCAGATAAACTGCCATATGGATCGTCAGCTTTAGAAATCCAAGAAGCACTTTCAGAATATGGTGCTAAATATGCAAGACATGTTGGTAAAGTAGATGAAGCCATGGAACTTAAAAGAACAGTGAGTGATATAAAGCATGAGGTGCAGTCACAGCTCATACAAAACGAAAAAACTCGCCGACGAGTTTCCGGTATAGCTAAGGAATTGAAAAAACTTCATAGAGAAGCTGTTCAAAACACCATTAACTCTCTCACAGTGGTTGCTGTCCTTTTCGCCTCAATAGCATTCTTGGCTATATTCAATTTGCCGGGTCAATATATTATGAAAGGATCACATATAGGAGAATCTAACATTGCGGATCATGTTGGATTTCAAATTTTCTGTCTCTTGAATTCGACGTCTCTTTTCATTTCTCTTGCAGTTGTTGTTGTTCAAATCACTTTGGTAGCTTGGGACACAAGGGCTCAAAAGCAGATCGTGTCTGTTGTTAACAAGCTAATGTGGGCTGCTTGTGCTTGCACGTGCGGCGCTTTTTTGGCAATCGCTTTTGAGGTTGTTGGAAAGAAAAAATGGATGGCTATTACCATAACTGGTTTAGGGATACCTATTCTAGTTGGGACTCTGGCAAGCATGTGCTACTTTGTTTTTCGACAACATTTTGGCATTTTCCAAAGTGATTCGCAGAGACGCATCAAGAGAGCAAGTGGAAGCAAATCCTTCTCATGGTCTTACTCTGCAAATATATCAGATATAGACGAATACACTTCAGACATTGAGAAGATCTATGCTTTGTAA

Protein sequence

>MS.gene052675.t1

MTHQSIFTTVGSGDLDGLKKLLEKLNKEEDGDRSNGSSTSSSSMSVSDVMSLQNDHGETPLYIAAHNNLKEVFTFLIKLCDFEVVKIRSKSDMNAFHVAAKRGHLDIVREILSAWPEVCKLCDSTNTSPLYAAAVQDHLDVVNAILDVDVSSMFIVRKNGKTALHNAVRYGVNRIVKALIVREPGIVCIKDKKGQTALHMAVKGQSTSVVEEILQADPTILNERDKKGNTALHMATRKGRSQIVSYLLSYAAVDVNAINKQQETALDLADKLPYGSSALEIQEALSEYGAKYARHVGKVDEAMELKRTVSDIKHEVQSQLIQNEKTRRRVSGIAKELKKLHREAVQNTINSLTVVAVLFASIAFLAIFNLPGQYIMKGSHIGESNIADHVGFQIFCLLNSTSLFISLAVVVVQITLVAWDTRAQKQIVSVVNKLMWAACACTCGAFLAIAFEVVGKKKWMAITITGLGIPILVGTLASMCYFVFRQHFGIFQSDSQRRIKRASGSKSFSWSYSANISDIDEYTSDIEKIYAL