Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48770.t1 | XP_013455212.1 | 98.1 | 482 | 9 | 0 | 1 | 482 | 27 | 508 | 2.90E-267 | 930.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48770.t1 | Q9SA38 | 48.9 | 483 | 238 | 5 | 2 | 477 | 29 | 509 | 4.7e-133 | 476.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48770.t1 | A0A072UJG0 | 98.1 | 482 | 9 | 0 | 1 | 482 | 27 | 508 | 2.1e-267 | 930.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051973 | MS.gene48770 | 0.808593 | 2.87E-50 | -1.69E-46 |
| MS.gene052503 | MS.gene48770 | -0.807582 | 4.71E-50 | -1.69E-46 |
| MS.gene052823 | MS.gene48770 | -0.812737 | 3.65E-51 | -1.69E-46 |
| MS.gene052825 | MS.gene48770 | -0.812451 | 4.21E-51 | -1.69E-46 |
| MS.gene05470 | MS.gene48770 | -0.828995 | 6.59E-55 | -1.69E-46 |
| MS.gene05589 | MS.gene48770 | -0.809911 | 1.50E-50 | -1.69E-46 |
| MS.gene056988 | MS.gene48770 | 0.813677 | 2.27E-51 | -1.69E-46 |
| MS.gene057831 | MS.gene48770 | -0.820434 | 6.87E-53 | -1.69E-46 |
| MS.gene06077 | MS.gene48770 | -0.821051 | 4.96E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48770.t1 | MTR_4g030040 | 98.133 | 482 | 9 | 0 | 1 | 482 | 27 | 508 | 0.0 | 967 |
| MS.gene48770.t1 | MTR_4g030040 | 98.133 | 482 | 9 | 0 | 1 | 482 | 28 | 509 | 0.0 | 967 |
| MS.gene48770.t1 | MTR_4g030210 | 85.774 | 478 | 67 | 1 | 1 | 478 | 33 | 509 | 0.0 | 827 |
| MS.gene48770.t1 | MTR_8g039190 | 71.726 | 481 | 132 | 2 | 1 | 478 | 29 | 508 | 0.0 | 710 |
| MS.gene48770.t1 | MTR_5g080050 | 69.072 | 485 | 143 | 2 | 1 | 478 | 27 | 511 | 0.0 | 665 |
| MS.gene48770.t1 | MTR_5g082760 | 67.343 | 493 | 146 | 3 | 1 | 478 | 29 | 521 | 0.0 | 650 |
| MS.gene48770.t1 | MTR_8g039070 | 64.657 | 481 | 130 | 4 | 1 | 478 | 29 | 472 | 0.0 | 612 |
| MS.gene48770.t1 | MTR_8g447340 | 45.825 | 491 | 254 | 5 | 2 | 481 | 32 | 521 | 7.50e-165 | 476 |
| MS.gene48770.t1 | MTR_2g081930 | 31.377 | 494 | 315 | 7 | 1 | 475 | 35 | 523 | 3.09e-77 | 251 |
| MS.gene48770.t1 | MTR_4g120720 | 38.206 | 301 | 146 | 7 | 51 | 345 | 2 | 268 | 5.34e-56 | 187 |
| MS.gene48770.t1 | MTR_2g081950 | 31.008 | 387 | 243 | 6 | 103 | 470 | 19 | 400 | 6.17e-47 | 168 |
| MS.gene48770.t1 | MTR_4g081490 | 29.199 | 387 | 261 | 6 | 103 | 481 | 66 | 447 | 2.03e-45 | 165 |
| MS.gene48770.t1 | MTR_2g081960 | 34.579 | 107 | 70 | 0 | 1 | 107 | 34 | 140 | 1.77e-18 | 82.4 |
| MS.gene48770.t1 | MTR_4g081480 | 31.776 | 107 | 69 | 2 | 1 | 103 | 38 | 144 | 9.11e-15 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48770.t1 | AT1G16390 | 48.340 | 482 | 242 | 4 | 2 | 477 | 29 | 509 | 2.74e-171 | 492 |
| MS.gene48770.t1 | AT1G79360 | 47.581 | 496 | 243 | 7 | 2 | 481 | 24 | 518 | 1.29e-169 | 488 |
| MS.gene48770.t1 | AT1G79410 | 43.182 | 484 | 266 | 6 | 1 | 479 | 28 | 507 | 1.56e-136 | 404 |
| MS.gene48770.t1 | AT1G16370 | 42.300 | 487 | 267 | 7 | 1 | 479 | 33 | 513 | 1.29e-135 | 401 |
| MS.gene48770.t1 | AT1G73220 | 36.049 | 491 | 298 | 5 | 1 | 481 | 48 | 532 | 4.40e-102 | 316 |
| MS.gene48770.t1 | AT3G20660 | 29.328 | 491 | 327 | 9 | 1 | 481 | 37 | 517 | 7.62e-68 | 226 |
| MS.gene48770.t1 | AT3G51490 | 28.902 | 173 | 115 | 3 | 101 | 266 | 3 | 174 | 1.79e-12 | 70.1 |
| MS.gene48770.t1 | AT3G51490 | 28.902 | 173 | 115 | 3 | 101 | 266 | 53 | 224 | 2.29e-12 | 69.7 |
| MS.gene48770.t1 | AT3G51490 | 28.902 | 173 | 115 | 3 | 101 | 266 | 53 | 224 | 2.30e-12 | 69.7 |
| MS.gene48770.t1 | AT1G34580 | 23.821 | 424 | 268 | 18 | 94 | 478 | 37 | 444 | 2.19e-11 | 66.2 |
| MS.gene48770.t1 | AT1G34580 | 24.292 | 424 | 266 | 19 | 94 | 478 | 87 | 494 | 4.27e-11 | 65.5 |
| MS.gene48770.t1 | AT1G20840 | 26.415 | 159 | 106 | 2 | 115 | 266 | 68 | 222 | 7.04e-11 | 65.1 |
| MS.gene48770.t1 | AT1G20840 | 26.415 | 159 | 106 | 2 | 115 | 266 | 68 | 222 | 7.04e-11 | 65.1 |
Find 95 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAATTGGAATGGTTTATTT+TGG | 0.180720 | 4.4:-73086737 | MS.gene48770:CDS |
| CGTGGAAATCGGTGTATATT+TGG | 0.206428 | 4.4:-73087036 | MS.gene48770:CDS |
| GAATATTTCTGCTTCACATT+AGG | 0.262371 | 4.4:-73087103 | MS.gene48770:CDS |
| AATATTTCTGCTTCACATTA+GGG | 0.272078 | 4.4:-73087102 | MS.gene48770:CDS |
| GAAAGGGGTTTAGGAAGATT+TGG | 0.291856 | 4.4:-73087640 | MS.gene48770:CDS |
| CCTCCCAGCAGATATCAAAA+AGG | 0.297351 | 4.4:+73086364 | None:intergenic |
| TTGTGTGGCTACTTATTTCT+TGG | 0.297902 | 4.4:-73086636 | MS.gene48770:CDS |
| GAAGCTATGGCAATGCTTAA+AGG | 0.298486 | 4.4:-73086923 | MS.gene48770:CDS |
| CAAGAATCGATGGCTTTCTT+TGG | 0.301329 | 4.4:+73086606 | None:intergenic |
| ATGGTTCTTGGTATTGGAAT+TGG | 0.308137 | 4.4:-73086752 | MS.gene48770:CDS |
| CCGCAATCTTCGTTCTTCAT+TGG | 0.331379 | 4.4:-73087373 | MS.gene48770:CDS |
| GCAAAATTCCCAAGTCTTCA+TGG | 0.331786 | 4.4:-73087474 | MS.gene48770:CDS |
| CGTCAATTGCAGAGTTGTTC+GGG | 0.343455 | 4.4:-73086808 | MS.gene48770:CDS |
| GAAATGATGGAAAGGGGTTT+AGG | 0.347800 | 4.4:-73087649 | MS.gene48770:CDS |
| TGTTACATTACTCGGTTTGC+CGG | 0.361066 | 4.4:-73086288 | MS.gene48770:CDS |
| CCTTTAGCCGTTGGAAACTT+AGG | 0.365016 | 4.4:-73086710 | MS.gene48770:CDS |
| TGTGCTAGTAGCTTTGTAAC+AGG | 0.368806 | 4.4:-73087400 | MS.gene48770:CDS |
| TGTATAATGTGTGTTATTGT+TGG | 0.371116 | 4.4:-73086557 | MS.gene48770:CDS |
| GCGGTAATGGTTCTTGGTAT+TGG | 0.379219 | 4.4:-73086758 | MS.gene48770:CDS |
| TCGTCAATTGCAGAGTTGTT+CGG | 0.383274 | 4.4:-73086809 | MS.gene48770:CDS |
| CAGAGTTGTTCGGGAGAAGT+TGG | 0.405119 | 4.4:-73086799 | MS.gene48770:CDS |
| TAGATATAATTCGTGGAAAT+CGG | 0.408726 | 4.4:-73087047 | MS.gene48770:CDS |
| AGCTGGAAAATCGAAGCCTT+TGG | 0.418174 | 4.4:+73086836 | None:intergenic |
| GATTTGTGCAATGCCATGTT+TGG | 0.422981 | 4.4:+73087527 | None:intergenic |
| ATGATTGAGTAAATAATTGC+AGG | 0.429182 | 4.4:+73087004 | None:intergenic |
| TTTCTTCTCTTGTTGATCCA+TGG | 0.431898 | 4.4:+73086238 | None:intergenic |
| AAAGCGAATGGTGGCGGTAA+TGG | 0.437000 | 4.4:-73086771 | MS.gene48770:CDS |
| CCGAGTGGAGGTTCACTGTT+GGG | 0.441877 | 4.4:-73087132 | MS.gene48770:CDS |
| ATGGTGGCGGTAATGGTTCT+TGG | 0.443762 | 4.4:-73086764 | MS.gene48770:CDS |
| AACAGATGAAATGATGGAAA+GGG | 0.447149 | 4.4:-73087656 | None:intergenic |
| ATCGGGACAACAAGGAATTA+AGG | 0.453209 | 4.4:-73086534 | MS.gene48770:CDS |
| TTTGGAATGCCTTTAGCCGT+TGG | 0.456255 | 4.4:-73086719 | MS.gene48770:CDS |
| AGAGTTGTTCGGGAGAAGTT+GGG | 0.457783 | 4.4:-73086798 | MS.gene48770:CDS |
| TTGTCTTGTGTTACATTACT+CGG | 0.467042 | 4.4:-73086296 | MS.gene48770:CDS |
| TGTTGTGTTCAACGGTTTGA+TGG | 0.467189 | 4.4:-73086669 | MS.gene48770:CDS |
| GAAGCCTTTGGTTTATTCAC+CGG | 0.470807 | 4.4:+73086848 | None:intergenic |
| TTCCCAAGTCTTCATGGTCA+TGG | 0.477803 | 4.4:-73087468 | MS.gene48770:CDS |
| TATTTGGCTGTTGTGTTCAA+CGG | 0.483478 | 4.4:-73086677 | MS.gene48770:CDS |
| ATCTTAATAGATATAATTCG+TGG | 0.492171 | 4.4:-73087054 | MS.gene48770:CDS |
| ATCCCATGACCATGAAGACT+TGG | 0.492338 | 4.4:+73087465 | None:intergenic |
| CTTGCATTAGAAGCCATCTC+GGG | 0.492815 | 4.4:+73086957 | None:intergenic |
| CTGCAATTGACGAGTAAAGC+TGG | 0.497090 | 4.4:+73086819 | None:intergenic |
| TAGAAGCCATCTCGGGGACT+CGG | 0.499415 | 4.4:+73086964 | None:intergenic |
| CCTTGCATTAGAAGCCATCT+CGG | 0.501206 | 4.4:+73086956 | None:intergenic |
| AAGCCTTTGGTTTATTCACC+GGG | 0.501987 | 4.4:+73086849 | None:intergenic |
| CCTAAGTTTCCAACGGCTAA+AGG | 0.502513 | 4.4:+73086710 | None:intergenic |
| GTAGTGTTCCTCACACTTGT+TGG | 0.503618 | 4.4:+73086434 | None:intergenic |
| ATGTGTGTTATTGTTGGATC+GGG | 0.504656 | 4.4:-73086551 | MS.gene48770:CDS |
| ATTAGCTCTTTCTGATACCA+TGG | 0.505100 | 4.4:-73086255 | MS.gene48770:CDS |
| TTAGGGTATGTGTCATTGCC+TGG | 0.518083 | 4.4:-73087085 | MS.gene48770:CDS |
| GGCTCTAAAGCGAATGGTGG+CGG | 0.520323 | 4.4:-73086777 | MS.gene48770:CDS |
| TCTTGGTATTGGAATTGGAA+TGG | 0.520997 | 4.4:-73086747 | MS.gene48770:CDS |
| GAATCTGATGCACATGTGGT+TGG | 0.527396 | 4.4:+73087505 | None:intergenic |
| GGGTTTAGGAAGATTTGGTT+GGG | 0.532129 | 4.4:-73087635 | MS.gene48770:CDS |
| GGGGTTTAGGAAGATTTGGT+TGG | 0.533651 | 4.4:-73087636 | MS.gene48770:CDS |
| TCCCAAGTCTTCATGGTCAT+GGG | 0.545408 | 4.4:-73087467 | MS.gene48770:CDS |
| GAGGAACACTACAACATCAT+TGG | 0.545790 | 4.4:-73086423 | MS.gene48770:CDS |
| AATGTGTGTTATTGTTGGAT+CGG | 0.549320 | 4.4:-73086552 | MS.gene48770:CDS |
| CAACAGATGAAATGATGGAA+AGG | 0.550084 | 4.4:-73087657 | None:intergenic |
| ACAAAACAGTGATATCTCAA+TGG | 0.553373 | 4.4:-73087432 | MS.gene48770:CDS |
| GACAACAAGGAATTAAGGTC+GGG | 0.563112 | 4.4:-73086529 | MS.gene48770:CDS |
| CTATTAAGATAAGCTATACC+AGG | 0.565268 | 4.4:+73087067 | None:intergenic |
| CTCGGTTTGCCGGAGTCAAG+AGG | 0.567370 | 4.4:-73086278 | MS.gene48770:CDS |
| CTTGTATTCTCGATAGCTAG+TGG | 0.577008 | 4.4:-73086587 | MS.gene48770:CDS |
| AAGTCTTCATGGTCATGGGA+TGG | 0.578503 | 4.4:-73087463 | MS.gene48770:CDS |
| AGGACGACATCAAGAAGCTA+TGG | 0.579332 | 4.4:-73086936 | MS.gene48770:CDS |
| ACTTTAGCTGATACATCACT+TGG | 0.581500 | 4.4:-73087322 | MS.gene48770:CDS |
| AGTAAGTTTAATAGAAGCCC+CGG | 0.581651 | 4.4:-73086867 | MS.gene48770:CDS |
| ACCGAGTGGAGGTTCACTGT+TGG | 0.582904 | 4.4:-73087133 | MS.gene48770:CDS |
| ATCGAGAATACAAGAATCGA+TGG | 0.586618 | 4.4:+73086596 | None:intergenic |
| AACAGAATAAATCCAAACAT+TGG | 0.591278 | 4.4:+73087231 | None:intergenic |
| ACAGATGAAATGATGGAAAG+GGG | 0.595316 | 4.4:-73087655 | None:intergenic |
| ATCGGTGTATATTTGGACAT+CGG | 0.596172 | 4.4:-73087029 | MS.gene48770:CDS |
| TCCCATGACCATGAAGACTT+GGG | 0.596643 | 4.4:+73087466 | None:intergenic |
| TTGTTACCGAGTCCCCGAGA+TGG | 0.599721 | 4.4:-73086970 | MS.gene48770:CDS |
| GGACAACAAGGAATTAAGGT+CGG | 0.602421 | 4.4:-73086530 | MS.gene48770:CDS |
| AGAGCTAATCCTCTTGACTC+CGG | 0.602963 | 4.4:+73086269 | None:intergenic |
| GATGGAAATACCGTCTTGTG+TGG | 0.605544 | 4.4:-73086651 | MS.gene48770:CDS |
| GTCAAAACCTAAGTTTCCAA+CGG | 0.615468 | 4.4:+73086703 | None:intergenic |
| AGCTGTTTCCAACAAGTGTG+AGG | 0.618465 | 4.4:-73086442 | MS.gene48770:CDS |
| ATTGTTGGATCGGGACAACA+AGG | 0.619158 | 4.4:-73086542 | MS.gene48770:CDS |
| CCGAGATGGCTTCTAATGCA+AGG | 0.623082 | 4.4:-73086956 | MS.gene48770:CDS |
| ATGCCATGTTTGGTATTCGT+CGG | 0.629753 | 4.4:+73087537 | None:intergenic |
| AAATAAGTAGCCACACAAGA+CGG | 0.630270 | 4.4:+73086641 | None:intergenic |
| AAGTTGGGCTCTAAAGCGAA+TGG | 0.635588 | 4.4:-73086783 | MS.gene48770:CDS |
| ACACCGACGAATACCAAACA+TGG | 0.647674 | 4.4:-73087540 | MS.gene48770:CDS |
| CCCAACAGTGAACCTCCACT+CGG | 0.649161 | 4.4:+73087132 | None:intergenic |
| AGCCCCGGTGAATAAACCAA+AGG | 0.656762 | 4.4:-73086852 | MS.gene48770:CDS |
| TTGCATTAGAAGCCATCTCG+GGG | 0.669568 | 4.4:+73086958 | None:intergenic |
| CTGAGAAAGTTAGTACCGAG+TGG | 0.671581 | 4.4:-73087147 | MS.gene48770:CDS |
| GTTAGAATCTGATGCACATG+TGG | 0.675405 | 4.4:+73087501 | None:intergenic |
| TTGGGCTCTAAAGCGAATGG+TGG | 0.677343 | 4.4:-73086780 | MS.gene48770:CDS |
| AGAAAGTTAGTACCGAGTGG+AGG | 0.706492 | 4.4:-73087144 | MS.gene48770:CDS |
| AGCCTTTGGTTTATTCACCG+GGG | 0.717627 | 4.4:+73086850 | None:intergenic |
| CCAATGAAGAACGAAGATTG+CGG | 0.721929 | 4.4:+73087373 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTTAATAGATATAATTCG+TGG | - | chr4.4:73086812-73086831 | MS.gene48770:CDS | 20.0% |
| !!! | AAAAATGACATTTTCTCATA+CGG | - | chr4.4:73087525-73087544 | MS.gene48770:CDS | 20.0% |
| !!! | TCTGTTTTTAAATTCTTGAT+TGG | - | chr4.4:73086652-73086671 | MS.gene48770:CDS | 20.0% |
| ! | AACAGAATAAATCCAAACAT+TGG | + | chr4.4:73086638-73086657 | None:intergenic | 25.0% |
| ! | ATGATTGAGTAAATAATTGC+AGG | + | chr4.4:73086865-73086884 | None:intergenic | 25.0% |
| ! | TAGATATAATTCGTGGAAAT+CGG | - | chr4.4:73086819-73086838 | MS.gene48770:CDS | 25.0% |
| !! | AATATTTCTGCTTCACATTA+GGG | - | chr4.4:73086764-73086783 | MS.gene48770:CDS | 25.0% |
| !! | TGTATAATGTGTGTTATTGT+TGG | - | chr4.4:73087309-73087328 | MS.gene48770:CDS | 25.0% |
| !!! | CTTAGGTTTTGACATTTATT+TGG | - | chr4.4:73087173-73087192 | MS.gene48770:CDS | 25.0% |
| ACAAAACAGTGATATCTCAA+TGG | - | chr4.4:73086434-73086453 | MS.gene48770:CDS | 30.0% | |
| CTATTAAGATAAGCTATACC+AGG | + | chr4.4:73086802-73086821 | None:intergenic | 30.0% | |
| TTGTCTTGTGTTACATTACT+CGG | - | chr4.4:73087570-73087589 | MS.gene48770:CDS | 30.0% | |
| ! | AATGTGTGTTATTGTTGGAT+CGG | - | chr4.4:73087314-73087333 | MS.gene48770:CDS | 30.0% |
| ! | GAATATTTCTGCTTCACATT+AGG | - | chr4.4:73086763-73086782 | MS.gene48770:CDS | 30.0% |
| ! | GGAATTGGAATGGTTTATTT+TGG | - | chr4.4:73087129-73087148 | MS.gene48770:CDS | 30.0% |
| ! | TTGTTTTCTCTACCAATGTT+TGG | - | chr4.4:73086623-73086642 | MS.gene48770:CDS | 30.0% |
| !! | TTCTTCATTGGTTGTCTTTT+CGG | - | chr4.4:73086505-73086524 | MS.gene48770:CDS | 30.0% |
| AAATAAGTAGCCACACAAGA+CGG | + | chr4.4:73087228-73087247 | None:intergenic | 35.0% | |
| ACTTTAGCTGATACATCACT+TGG | - | chr4.4:73086544-73086563 | MS.gene48770:CDS | 35.0% | |
| AGTAAGTTTAATAGAAGCCC+CGG | - | chr4.4:73086999-73087018 | MS.gene48770:CDS | 35.0% | |
| ATCGAGAATACAAGAATCGA+TGG | + | chr4.4:73087273-73087292 | None:intergenic | 35.0% | |
| ATCGGTGTATATTTGGACAT+CGG | - | chr4.4:73086837-73086856 | MS.gene48770:CDS | 35.0% | |
| GTCAAAACCTAAGTTTCCAA+CGG | + | chr4.4:73087166-73087185 | None:intergenic | 35.0% | |
| TATTTGGCTGTTGTGTTCAA+CGG | - | chr4.4:73087189-73087208 | MS.gene48770:CDS | 35.0% | |
| TTTCTTCTCTTGTTGATCCA+TGG | + | chr4.4:73087631-73087650 | None:intergenic | 35.0% | |
| ! | ATGGTTCTTGGTATTGGAAT+TGG | - | chr4.4:73087114-73087133 | MS.gene48770:CDS | 35.0% |
| ! | ATGTGTGTTATTGTTGGATC+GGG | - | chr4.4:73087315-73087334 | MS.gene48770:CDS | 35.0% |
| ! | ATTAGCTCTTTCTGATACCA+TGG | - | chr4.4:73087611-73087630 | MS.gene48770:CDS | 35.0% |
| ! | GTGAGACAAGCTATTGTTTT+TGG | - | chr4.4:73087465-73087484 | MS.gene48770:CDS | 35.0% |
| ! | TCTTGGTATTGGAATTGGAA+TGG | - | chr4.4:73087119-73087138 | MS.gene48770:CDS | 35.0% |
| ! | TTGTGTGGCTACTTATTTCT+TGG | - | chr4.4:73087230-73087249 | MS.gene48770:CDS | 35.0% |
| ATCGGGACAACAAGGAATTA+AGG | - | chr4.4:73087332-73087351 | MS.gene48770:CDS | 40.0% | |
| ATGCCATGTTTGGTATTCGT+CGG | + | chr4.4:73086332-73086351 | None:intergenic | 40.0% | |
| CAAGAATCGATGGCTTTCTT+TGG | + | chr4.4:73087263-73087282 | None:intergenic | 40.0% | |
| CCAATGAAGAACGAAGATTG+CGG | + | chr4.4:73086496-73086515 | None:intergenic | 40.0% | |
| CGTGGAAATCGGTGTATATT+TGG | - | chr4.4:73086830-73086849 | MS.gene48770:CDS | 40.0% | |
| CTCCCAGCAGATATCAAAAA+GGG | + | chr4.4:73087504-73087523 | None:intergenic | 40.0% | |
| CTTGTATTCTCGATAGCTAG+TGG | - | chr4.4:73087279-73087298 | MS.gene48770:CDS | 40.0% | |
| GAAAGGGGTTTAGGAAGATT+TGG | - | chr4.4:73086226-73086245 | MS.gene48770:CDS | 40.0% | |
| GAAGCTATGGCAATGCTTAA+AGG | - | chr4.4:73086943-73086962 | MS.gene48770:CDS | 40.0% | |
| GACAACAAGGAATTAAGGTC+GGG | - | chr4.4:73087337-73087356 | MS.gene48770:CDS | 40.0% | |
| GAGGAACACTACAACATCAT+TGG | - | chr4.4:73087443-73087462 | MS.gene48770:CDS | 40.0% | |
| GATTTGTGCAATGCCATGTT+TGG | + | chr4.4:73086342-73086361 | None:intergenic | 40.0% | |
| GCAAAATTCCCAAGTCTTCA+TGG | - | chr4.4:73086392-73086411 | MS.gene48770:CDS | 40.0% | |
| GGACAACAAGGAATTAAGGT+CGG | - | chr4.4:73087336-73087355 | MS.gene48770:CDS | 40.0% | |
| GTTAGAATCTGATGCACATG+TGG | + | chr4.4:73086368-73086387 | None:intergenic | 40.0% | |
| TCCCAGCAGATATCAAAAAG+GGG | + | chr4.4:73087503-73087522 | None:intergenic | 40.0% | |
| TCGTCAATTGCAGAGTTGTT+CGG | - | chr4.4:73087057-73087076 | MS.gene48770:CDS | 40.0% | |
| TGTTGTGTTCAACGGTTTGA+TGG | - | chr4.4:73087197-73087216 | MS.gene48770:CDS | 40.0% | |
| ! | AAGCCTTTGGTTTATTCACC+GGG | + | chr4.4:73087020-73087039 | None:intergenic | 40.0% |
| ! | ATTTTCTCATACGGCGTGTT+TGG | - | chr4.4:73087534-73087553 | MS.gene48770:CDS | 40.0% |
| ! | GAAGCCTTTGGTTTATTCAC+CGG | + | chr4.4:73087021-73087040 | None:intergenic | 40.0% |
| ! | GATATCACTGTTTTGTGTGC+TGG | + | chr4.4:73086430-73086449 | None:intergenic | 40.0% |
| ! | GGGTTTAGGAAGATTTGGTT+GGG | - | chr4.4:73086231-73086250 | MS.gene48770:CDS | 40.0% |
| ! | TGTTACATTACTCGGTTTGC+CGG | - | chr4.4:73087578-73087597 | MS.gene48770:CDS | 40.0% |
| !! | TGTGCTAGTAGCTTTGTAAC+AGG | - | chr4.4:73086466-73086485 | MS.gene48770:CDS | 40.0% |
| AAGTCTTCATGGTCATGGGA+TGG | - | chr4.4:73086403-73086422 | MS.gene48770:CDS | 45.0% | |
| ACACCGACGAATACCAAACA+TGG | - | chr4.4:73086326-73086345 | MS.gene48770:CDS | 45.0% | |
| AGAGCTAATCCTCTTGACTC+CGG | + | chr4.4:73087600-73087619 | None:intergenic | 45.0% | |
| AGAGTTGTTCGGGAGAAGTT+GGG | - | chr4.4:73087068-73087087 | MS.gene48770:CDS | 45.0% | |
| AGCTGGAAAATCGAAGCCTT+TGG | + | chr4.4:73087033-73087052 | None:intergenic | 45.0% | |
| AGGACGACATCAAGAAGCTA+TGG | - | chr4.4:73086930-73086949 | MS.gene48770:CDS | 45.0% | |
| ATCCCATGACCATGAAGACT+TGG | + | chr4.4:73086404-73086423 | None:intergenic | 45.0% | |
| ATTGTTGGATCGGGACAACA+AGG | - | chr4.4:73087324-73087343 | MS.gene48770:CDS | 45.0% | |
| CCGCAATCTTCGTTCTTCAT+TGG | - | chr4.4:73086493-73086512 | MS.gene48770:CDS | 45.0% | |
| CCTAAGTTTCCAACGGCTAA+AGG | + | chr4.4:73087159-73087178 | None:intergenic | 45.0% | |
| CCTCCCAGCAGATATCAAAA+AGG | + | chr4.4:73087505-73087524 | None:intergenic | 45.0% | |
| CCTTGCATTAGAAGCCATCT+CGG | + | chr4.4:73086913-73086932 | None:intergenic | 45.0% | |
| CCTTTAGCCGTTGGAAACTT+AGG | - | chr4.4:73087156-73087175 | MS.gene48770:CDS | 45.0% | |
| CGTCAATTGCAGAGTTGTTC+GGG | - | chr4.4:73087058-73087077 | MS.gene48770:CDS | 45.0% | |
| CTGCAATTGACGAGTAAAGC+TGG | + | chr4.4:73087050-73087069 | None:intergenic | 45.0% | |
| CTTGCATTAGAAGCCATCTC+GGG | + | chr4.4:73086912-73086931 | None:intergenic | 45.0% | |
| GAATCTGATGCACATGTGGT+TGG | + | chr4.4:73086364-73086383 | None:intergenic | 45.0% | |
| GATGGAAATACCGTCTTGTG+TGG | - | chr4.4:73087215-73087234 | MS.gene48770:CDS | 45.0% | |
| GTAGTGTTCCTCACACTTGT+TGG | + | chr4.4:73087435-73087454 | None:intergenic | 45.0% | |
| TCCCAAGTCTTCATGGTCAT+GGG | - | chr4.4:73086399-73086418 | MS.gene48770:CDS | 45.0% | |
| TCCCATGACCATGAAGACTT+GGG | + | chr4.4:73086403-73086422 | None:intergenic | 45.0% | |
| TTCCCAAGTCTTCATGGTCA+TGG | - | chr4.4:73086398-73086417 | MS.gene48770:CDS | 45.0% | |
| TTGCATTAGAAGCCATCTCG+GGG | + | chr4.4:73086911-73086930 | None:intergenic | 45.0% | |
| ! | AGAAAGTTAGTACCGAGTGG+AGG | - | chr4.4:73086722-73086741 | MS.gene48770:CDS | 45.0% |
| ! | AGCCCCTTTTTGATATCTGC+TGG | - | chr4.4:73087498-73087517 | MS.gene48770:CDS | 45.0% |
| ! | AGCCTTTGGTTTATTCACCG+GGG | + | chr4.4:73087019-73087038 | None:intergenic | 45.0% |
| ! | AGCTGTTTCCAACAAGTGTG+AGG | - | chr4.4:73087424-73087443 | MS.gene48770:CDS | 45.0% |
| ! | CCTTTTTGATATCTGCTGGG+AGG | - | chr4.4:73087502-73087521 | MS.gene48770:CDS | 45.0% |
| ! | CTGAGAAAGTTAGTACCGAG+TGG | - | chr4.4:73086719-73086738 | MS.gene48770:CDS | 45.0% |
| ! | GCCCCTTTTTGATATCTGCT+GGG | - | chr4.4:73087499-73087518 | MS.gene48770:CDS | 45.0% |
| ! | GCGGTAATGGTTCTTGGTAT+TGG | - | chr4.4:73087108-73087127 | MS.gene48770:CDS | 45.0% |
| ! | GGGGTTTAGGAAGATTTGGT+TGG | - | chr4.4:73086230-73086249 | MS.gene48770:CDS | 45.0% |
| ! | TTAGGGTATGTGTCATTGCC+TGG | - | chr4.4:73086781-73086800 | MS.gene48770:CDS | 45.0% |
| ! | TTTGGAATGCCTTTAGCCGT+TGG | - | chr4.4:73087147-73087166 | MS.gene48770:CDS | 45.0% |
| !! | AAGTTGGGCTCTAAAGCGAA+TGG | - | chr4.4:73087083-73087102 | MS.gene48770:CDS | 45.0% |
| AGCCCCGGTGAATAAACCAA+AGG | - | chr4.4:73087014-73087033 | MS.gene48770:CDS | 50.0% | |
| CAGAGTTGTTCGGGAGAAGT+TGG | - | chr4.4:73087067-73087086 | MS.gene48770:CDS | 50.0% | |
| CCGAGATGGCTTCTAATGCA+AGG | - | chr4.4:73086910-73086929 | MS.gene48770:CDS | 50.0% | |
| ! | GGCTTTTTGCGTTCGTCGAT+TGG | - | chr4.4:73086673-73086692 | MS.gene48770:CDS | 50.0% |
| !! | AAAGCGAATGGTGGCGGTAA+TGG | - | chr4.4:73087095-73087114 | MS.gene48770:CDS | 50.0% |
| !! | ATGGTGGCGGTAATGGTTCT+TGG | - | chr4.4:73087102-73087121 | MS.gene48770:CDS | 50.0% |
| !! | TTGGGCTCTAAAGCGAATGG+TGG | - | chr4.4:73087086-73087105 | MS.gene48770:CDS | 50.0% |
| ACCGAGTGGAGGTTCACTGT+TGG | - | chr4.4:73086733-73086752 | MS.gene48770:CDS | 55.0% | |
| CCCAACAGTGAACCTCCACT+CGG | + | chr4.4:73086737-73086756 | None:intergenic | 55.0% | |
| CCGAGTGGAGGTTCACTGTT+GGG | - | chr4.4:73086734-73086753 | MS.gene48770:CDS | 55.0% | |
| TAGAAGCCATCTCGGGGACT+CGG | + | chr4.4:73086905-73086924 | None:intergenic | 55.0% | |
| TTGTTACCGAGTCCCCGAGA+TGG | - | chr4.4:73086896-73086915 | MS.gene48770:CDS | 55.0% | |
| !! | GGCTCTAAAGCGAATGGTGG+CGG | - | chr4.4:73087089-73087108 | MS.gene48770:CDS | 55.0% |
| ! | CTCGGTTTGCCGGAGTCAAG+AGG | - | chr4.4:73087588-73087607 | MS.gene48770:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 73086220 | 73087668 | 73086220 | ID=MS.gene48770 |
| chr4.4 | mRNA | 73086220 | 73087668 | 73086220 | ID=MS.gene48770.t1;Parent=MS.gene48770 |
| chr4.4 | exon | 73086220 | 73087668 | 73086220 | ID=MS.gene48770.t1.exon1;Parent=MS.gene48770.t1 |
| chr4.4 | CDS | 73086220 | 73087668 | 73086220 | ID=cds.MS.gene48770.t1;Parent=MS.gene48770.t1 |
| Gene Sequence |
| Protein sequence |
