AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050355


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 0 sgRNAs with CRISPR-Local

Find 17 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTACAGAAAAAGTTTACA+TGG - 11033:5143-5162 MS.gene050355:intron 20.0%
! AAGAAATTGCTCACATTATA+TGG - 11033:4950-4969 MS.gene050355:CDS 25.0%
!!! CGAAAAAACTTTGAAATAAG+GGG - 11033:5190-5209 MS.gene050355:CDS 25.0%
!!! GCGAAAAAACTTTGAAATAA+GGG - 11033:5189-5208 MS.gene050355:CDS 25.0%
!!! TGCGAAAAAACTTTGAAATA+AGG - 11033:5188-5207 MS.gene050355:CDS 25.0%
!!! TTACTTAATCTGTTCTAAAG+AGG + 11033:5093-5112 None:intergenic 25.0%
ATATGGTCTCAATTAGAAGA+GGG - 11033:4967-4986 MS.gene050355:CDS 30.0%
ATGAGTCAAAGAAATCATCT+CGG + 11033:5026-5045 None:intergenic 30.0%
TATATGGTCTCAATTAGAAG+AGG - 11033:4966-4985 MS.gene050355:CDS 30.0%
TGATTTCTTTGACTCATTCA+TGG - 11033:5029-5048 MS.gene050355:intron 30.0%
TTTCTTTAACTACCAATGTG+TGG + 11033:4936-4955 None:intergenic 30.0%
CCTGATAATTGCTTCCATGA+CGG + 11033:4997-5016 None:intergenic 40.0%
! CTCAGTTGATGCAAGAAGTT+CGG - 11033:5227-5246 MS.gene050355:CDS 40.0%
CCGTCATGGAAGCAATTATC+AGG - 11033:4994-5013 MS.gene050355:CDS 45.0%
TACATGGCAACCAGAGCATA+AGG - 11033:5159-5178 MS.gene050355:CDS 45.0%
TAGAAGAGGGAAAACCGTCA+TGG - 11033:4980-4999 MS.gene050355:CDS 45.0%
! CGCACTTTTACCTTATGCTC+TGG + 11033:5172-5191 None:intergenic 45.0%


Chromosome Type Strat End Strand Name
11033 gene 4924 5273 4924 ID=MS.gene050355
11033 mRNA 4924 5273 4924 ID=MS.gene050355.t1;Parent=MS.gene050355
11033 exon 5147 5273 5147 ID=MS.gene050355.t1.exon1;Parent=MS.gene050355.t1
11033 CDS 5147 5273 5147 ID=cds.MS.gene050355.t1;Parent=MS.gene050355.t1
11033 exon 4924 5046 4924 ID=MS.gene050355.t1.exon2;Parent=MS.gene050355.t1
11033 CDS 4924 5046 4924 ID=cds.MS.gene050355.t1;Parent=MS.gene050355.t1
Gene Sequence

>MS.gene050355

GTTTGATCACCACACATTGGTAGTTAAAGAAATTGCTCACATTATATGGTCTCAATTAGAAGAGGGAAAACCGTCATGGAAGCAATTATCAGGAAATCACCGAGATGATTTCTTTGACTCATTCATGGTAATTATCAACTAAGTTTCTGACTATGACATTACAGAACCTCTTTAGAACAGATTAAGTAAATAATGTTTGAACTTTTTTTCTTATCTGATTATTACAGAAAAAGTTTACATGGCAACCAGAGCATAAGGTAAAAGTGCGAAAAAACTTTGAAATAAGGGGTGCAGCTAAGATGTCTCAGTTGATGCAAGAAGTTCGGAAAAGTAGATTGAGTCAAAGTTGA

Protein sequence

>MS.gene050355.t1

VUSPHIGSURNCSHYMVSIRRGKTVMEAIIRKSPRUFLULIHEKVYMATRAUGKSAKKLUNKGCSUDVSVDARSSEKUIESKL