AlfalfaGEDB | MS.gene49145

M. sativa cultivar XinJiangDaYe / MS.gene49145

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49145.t1	AFK38248.1	97.3	184	5	0	1	184	7	190	1.20E-69	272.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49145.t1	I3SDA6	97.3	184	5	0	1	184	7	190	9.0e-70	272.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049419	MS.gene49145	-0.801681	8.03E-49	-1.69E-46
MS.gene049680	MS.gene49145	0.800181	1.63E-48	-1.69E-46
MS.gene053963	MS.gene49145	0.801178	1.02E-48	-1.69E-46
MS.gene058008	MS.gene49145	0.808288	3.33E-50	-1.69E-46
MS.gene058159	MS.gene49145	0.803642	3.16E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene006242	MS.gene49145	PPI
MS.gene49145	MS.gene061135	PPI
MS.gene60604	MS.gene49145	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49145.t1	MTR_1g100090	97.794	136	3	0	1	136	7	142	2.17e-95	274

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49145.t1	AT4G25670	54.054	185	81	3	1	184	1	182	4.91e-50	160
MS.gene49145.t1	AT4G25670	54.054	185	81	3	1	184	1	182	4.91e-50	160
MS.gene49145.t1	AT4G25690	51.795	195	73	5	1	184	1	185	1.24e-49	159
MS.gene49145.t1	AT4G25690	51.795	195	73	5	1	184	1	185	1.24e-49	159
MS.gene49145.t1	AT5G52550	50.273	183	68	6	16	184	181	354	7.23e-44	149
MS.gene49145.t1	AT5G52550	73.333	60	16	0	16	75	78	137	9.32e-18	79.7

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Find 38 sgRNAs with CRISPR-Local

Find 43 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCGCTTTACGAAGCAGGA+TGG	0.534751	1.3:+68786042	MS.gene49145:CDS
AAGTAGAACATGCAGAGCGA+CGG	0.623440	1.3:-68785832	None:intergenic
AATAATCTTGATTTCTTCAT+GGG	0.406348	1.3:+68785912	MS.gene49145:CDS
AATCTTGATTTCTTCATGGG+TGG	0.519569	1.3:+68785915	MS.gene49145:CDS
ACAACAAAGACTTGATGAAG+AGG	0.600172	1.3:+68785791	MS.gene49145:CDS
ACCGCTTTACGAAGCAGGAT+GGG	0.538753	1.3:+68786043	MS.gene49145:CDS
AGACTCGGATGATTCATATA+AGG	0.459137	1.3:+68785860	MS.gene49145:CDS
AGATAGACCACTTGCCGTTT+TGG	0.291490	1.3:-68785989	None:intergenic
AGATCAACAGAGAATCTTGT+AGG	0.486420	1.3:-68786068	None:intergenic
AGGATAGGATTCTCTTCTAA+TGG	0.433534	1.3:+68786141	MS.gene49145:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGCTGAAAAGAAAAAGAGA+CGG	+	chr1.3:68785694-68785713	MS.gene49145:CDS	30.0%
GATAACATGGCATGTAATAA+AGG	+	chr1.3:68785609-68785628	MS.gene49145:CDS	30.0%
AATCTTGATTTCTTCATGGG+TGG	+	chr1.3:68785915-68785934	MS.gene49145:CDS	35.0%
ACAACAAAGACTTGATGAAG+AGG	+	chr1.3:68785791-68785810	MS.gene49145:CDS	35.0%
AGACTCGGATGATTCATATA+AGG	+	chr1.3:68785860-68785879	MS.gene49145:CDS	35.0%
AGATCAACAGAGAATCTTGT+AGG	-	chr1.3:68786071-68786090	None:intergenic	35.0%
ATCTTGATTTCTTCATGGGT+GGG	+	chr1.3:68785916-68785935	MS.gene49145:CDS	35.0%
CAACAAAGACTTGATGAAGA+GGG	+	chr1.3:68785792-68785811	MS.gene49145:CDS	35.0%
TGAAAAGAAAAAGAGACGGT+TGG	+	chr1.3:68785698-68785717	MS.gene49145:CDS	35.0%
TGTTCTACTTGATGAAGACT+CGG	+	chr1.3:68785845-68785864	MS.gene49145:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	68785606	68786160	68785606	ID=MS.gene49145
chr1.3	mRNA	68785606	68786160	68785606	ID=MS.gene49145.t1;Parent=MS.gene49145
chr1.3	exon	68785606	68786160	68785606	ID=MS.gene49145.t1.exon1;Parent=MS.gene49145.t1
chr1.3	CDS	68785606	68786160	68785606	ID=cds.MS.gene49145.t1;Parent=MS.gene49145.t1

Gene Sequence

>MS.gene49145

ATGGATAACATGGCATGTAATAAAGGGCAACAACATGTGAGAAAGACAAAGAAGAAGCAGGTGAAAGATGAGTTGGATCGTCTCAAACAAGCTGAAAAGAAAAAGAGACGGTTGGAAAAAGCTCTAGCTACTTCTGCTGCCATCATATCGGAACTGGAAAAAAAGAAACAGAAAAAGAAAGAAGAACAACAAAGACTTGATGAAGAGGGTGCTGCAATTGCGGAAGCCGTCGCTCTGCATGTTCTACTTGATGAAGACTCGGATGATTCATATAAGGTTGAGTGCAAGACCTGGGATGATTATAATAATAATCTTGATTTCTTCATGGGTGGGAAAAGAGCTTGCTTTCCTAATCTAGATGGTGGCACATGGTCCGTCACTTCCCAAAACGGCAAGTGGTCTATCTCGTCCGGGCCTTTTGAAAACAATGTGCACGAACCGCTTTACGAAGCAGGATGGGATCCTACAAGATTCTCTGTTGATCTTATAGCAGCACAAGCAGTTAGATCACTCCACATTGCAGAGAATGCAGATGAGGATAGGATTCTCTTCTAA

Protein sequence

>MS.gene49145.t1

MDNMACNKGQQHVRKTKKKQVKDELDRLKQAEKKKRRLEKALATSAAIISELEKKKQKKKEEQQRLDEEGAAIAEAVALHVLLDEDSDDSYKVECKTWDDYNNNLDFFMGGKRACFPNLDGGTWSVTSQNGKWSISSGPFENNVHEPLYEAGWDPTRFSVDLIAAQAVRSLHIAENADEDRILF