Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49167.t1 | RHN81739.1 | 92.2 | 282 | 22 | 0 | 3 | 284 | 22 | 303 | 8.70E-139 | 503.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49167.t1 | G7IDX3 | 92.2 | 282 | 22 | 0 | 3 | 284 | 2 | 283 | 6.3e-139 | 503.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene49167 | 0.813859 | 2.07E-51 | -1.69E-46 |
| MS.gene050577 | MS.gene49167 | 0.80147 | 8.87E-49 | -1.69E-46 |
| MS.gene052164 | MS.gene49167 | 0.811563 | 6.58E-51 | -1.69E-46 |
| MS.gene05470 | MS.gene49167 | 0.801142 | 1.03E-48 | -1.69E-46 |
| MS.gene055362 | MS.gene49167 | 0.809797 | 1.58E-50 | -1.69E-46 |
| MS.gene055748 | MS.gene49167 | 0.812868 | 3.41E-51 | -1.69E-46 |
| MS.gene055751 | MS.gene49167 | 0.810532 | 1.10E-50 | -1.69E-46 |
| MS.gene059022 | MS.gene49167 | 0.800022 | 1.75E-48 | -1.69E-46 |
| MS.gene06077 | MS.gene49167 | 0.807107 | 5.94E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49167.t1 | MTR_1g099520 | 94.700 | 283 | 13 | 2 | 3 | 284 | 2 | 283 | 0.0 | 536 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49167.t1 | AT1G28140 | 70.565 | 248 | 71 | 1 | 36 | 281 | 31 | 278 | 4.52e-117 | 337 |
Find 69 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTTACTTTGCTTGCTTTA+TGG | 0.047856 | 1.3:-68573252 | MS.gene49167:CDS |
| CAAGTTTATAACGGTGTTTA+TGG | 0.225993 | 1.3:-68575813 | MS.gene49167:CDS |
| AGCGCACTCTGCAAGCATTA+TGG | 0.246210 | 1.3:-68574194 | MS.gene49167:CDS |
| TTATGGGGCCTCGGGGTTCT+TGG | 0.285137 | 1.3:-68574177 | MS.gene49167:CDS |
| GAAAGCCTTGATTGAGAAAC+TGG | 0.308650 | 1.3:-68573032 | MS.gene49167:CDS |
| CGTCATTGGGTCAGGTGGGT+TGG | 0.319339 | 1.3:-68574259 | MS.gene49167:CDS |
| TCATAAGTAATTTACCTTGA+TGG | 0.335092 | 1.3:+68573186 | None:intergenic |
| ATTATTCCTATTCTTCTTCT+CGG | 0.344771 | 1.3:-68573867 | MS.gene49167:CDS |
| GTCATTGGGTCAGGTGGGTT+GGG | 0.353231 | 1.3:-68574258 | MS.gene49167:CDS |
| AGTGTATCACTTAGGTTATC+AGG | 0.353832 | 1.3:+68574306 | None:intergenic |
| AAATTTGCAGTCCGGTTTGA+TGG | 0.360898 | 1.3:-68573287 | MS.gene49167:intron |
| ACTTAGGTTATCAGGCAAAT+AGG | 0.372431 | 1.3:+68574314 | None:intergenic |
| GCGCACTCTGCAAGCATTAT+GGG | 0.374010 | 1.3:-68574193 | MS.gene49167:CDS |
| TACTTTGCTTGCTTTATGGA+TGG | 0.378911 | 1.3:-68573248 | MS.gene49167:CDS |
| CCATCAGCTGTCTGGCTCAT+TGG | 0.387191 | 1.3:-68574084 | MS.gene49167:CDS |
| TATTCTTCTTCTCGGACATC+TGG | 0.389731 | 1.3:-68573859 | MS.gene49167:intron |
| TCTTCTCCGAGAATCAGAAT+TGG | 0.396228 | 1.3:-68575873 | MS.gene49167:CDS |
| TGCAAGCATTATGGGGCCTC+GGG | 0.396833 | 1.3:-68574185 | MS.gene49167:CDS |
| CTGCAAGCATTATGGGGCCT+CGG | 0.396844 | 1.3:-68574186 | MS.gene49167:CDS |
| TTGTTCCAGTTTCTCAATCA+AGG | 0.397711 | 1.3:+68573027 | None:intergenic |
| CATAAGTAATTTACCTTGAT+GGG | 0.407793 | 1.3:+68573187 | None:intergenic |
| CAGTATCTTCGAATCTTGTT+CGG | 0.410453 | 1.3:-68575923 | MS.gene49167:CDS |
| ACCGACCCAATTCTGATTCT+CGG | 0.410553 | 1.3:+68575867 | None:intergenic |
| CTACATCACCCTTGCCCAAC+CGG | 0.413007 | 1.3:-68574142 | MS.gene49167:CDS |
| ATCCTCGGCTTCAACGGTCC+AGG | 0.423372 | 1.3:+68575788 | None:intergenic |
| GGGCTGAGTGAATTTCCTTC+CGG | 0.442279 | 1.3:+68573207 | None:intergenic |
| TTGATAACCCATCAGCTGTC+TGG | 0.447673 | 1.3:-68574092 | MS.gene49167:CDS |
| AGTTCCGTCGTCCATCAAAC+CGG | 0.455453 | 1.3:+68573276 | None:intergenic |
| ATAACGGTGTTTATGGCCCC+TGG | 0.459012 | 1.3:-68575806 | MS.gene49167:CDS |
| GAGAGATTTGAACGTGAAAA+CGG | 0.460841 | 1.3:+68573069 | None:intergenic |
| ACTTTGCTTGCTTTATGGAT+GGG | 0.461719 | 1.3:-68573247 | MS.gene49167:CDS |
| CTTCTCCGAGAATCAGAATT+GGG | 0.474693 | 1.3:-68575872 | MS.gene49167:CDS |
| CAGGTTATATCGTACCGATC+AGG | 0.483142 | 1.3:-68574381 | MS.gene49167:CDS |
| AGAAATATGGCGGCGTTACA+AGG | 0.484410 | 1.3:-68575987 | None:intergenic |
| AGATGTCCGAGAAGAAGAAT+AGG | 0.484627 | 1.3:+68573861 | None:intergenic |
| TCCTCGGCTTCAACGGTCCA+GGG | 0.485072 | 1.3:+68575789 | None:intergenic |
| TTTGACATCCTCGGCTTCAA+CGG | 0.497087 | 1.3:+68575782 | None:intergenic |
| TGCTACGGCAAGCTAGAAGC+TGG | 0.499071 | 1.3:-68573903 | MS.gene49167:CDS |
| CCAATGAGCCAGACAGCTGA+TGG | 0.515793 | 1.3:+68574084 | None:intergenic |
| TTTGCTTGAGTGTATCACTT+AGG | 0.522780 | 1.3:+68574298 | None:intergenic |
| TTTACGTCATTGGGTCAGGT+GGG | 0.540791 | 1.3:-68574263 | MS.gene49167:CDS |
| CGGTTGGGCAAGGGTGATGT+AGG | 0.542884 | 1.3:+68574143 | None:intergenic |
| TAGTACCTCTTTGACATCCT+CGG | 0.544863 | 1.3:+68575773 | None:intergenic |
| TTTATTAGCCGGTTGGGCAA+GGG | 0.546853 | 1.3:+68574134 | None:intergenic |
| TCGGTACGGTGTAAAGCGGC+GGG | 0.552551 | 1.3:-68575849 | MS.gene49167:CDS |
| ACACGACATAAACTTGAAGA+AGG | 0.555021 | 1.3:+68575897 | None:intergenic |
| CCCCTGGACCGTTGAAGCCG+AGG | 0.562825 | 1.3:-68575790 | MS.gene49167:CDS |
| GTCGGTACGGTGTAAAGCGG+CGG | 0.563056 | 1.3:-68575850 | MS.gene49167:CDS |
| TATATCGTACCGATCAGGAT+TGG | 0.575057 | 1.3:-68574376 | MS.gene49167:CDS |
| GAAATTCACTCAGCCCATCA+AGG | 0.577695 | 1.3:-68573200 | MS.gene49167:intron |
| CGCACTCTGCAAGCATTATG+GGG | 0.582516 | 1.3:-68574192 | MS.gene49167:CDS |
| AAGCAGCAGCAAGTTTATAA+CGG | 0.590144 | 1.3:-68575822 | MS.gene49167:CDS |
| GAGTACTACTGTTGGTGTGG+CGG | 0.590730 | 1.3:-68575961 | MS.gene49167:CDS |
| CTTGAAACAGGACTCTGCTA+CGG | 0.605674 | 1.3:-68573918 | MS.gene49167:intron |
| GAATCAGAATTGGGTCGGTA+CGG | 0.606759 | 1.3:-68575863 | MS.gene49167:CDS |
| TCCGAGAATCAGAATTGGGT+CGG | 0.617946 | 1.3:-68575868 | MS.gene49167:CDS |
| TTTAATATCAAGGATGACAT+CGG | 0.623685 | 1.3:-68573100 | MS.gene49167:intron |
| CCTCGGCTTCAACGGTCCAG+GGG | 0.626003 | 1.3:+68575790 | None:intergenic |
| CAATGAGCCAGACAGCTGAT+GGG | 0.628279 | 1.3:+68574085 | None:intergenic |
| CAAGGAATGAGTACTACTGT+TGG | 0.629637 | 1.3:-68575969 | MS.gene49167:CDS |
| ATCAGGATTGGTAACAGCTG+CGG | 0.633244 | 1.3:-68574364 | MS.gene49167:CDS |
| CAGCTGTTACCAATCCTGAT+CGG | 0.643027 | 1.3:+68574367 | None:intergenic |
| CAGTCCGGTTTGATGGACGA+CGG | 0.644994 | 1.3:-68573280 | MS.gene49167:CDS |
| TGAAGCCGAGGATGTCAAAG+AGG | 0.649851 | 1.3:-68575778 | MS.gene49167:intron |
| TGGGTCGGTACGGTGTAAAG+CGG | 0.668122 | 1.3:-68575853 | MS.gene49167:CDS |
| TAGGTTATCAGGCAAATAGG+CGG | 0.692103 | 1.3:+68574317 | None:intergenic |
| AATGAGTACTACTGTTGGTG+TGG | 0.699889 | 1.3:-68575964 | MS.gene49167:CDS |
| GCAAGCATTATGGGGCCTCG+GGG | 0.704748 | 1.3:-68574184 | MS.gene49167:CDS |
| CAGCTGATCCAAGAACCCCG+AGG | 0.791341 | 1.3:+68574169 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAGGTATATTATATTAAT+GGG | + | chr1.3:68573915-68573934 | None:intergenic | 10.0% |
| !!! | TTCGTTAATATTATTTTTTT+TGG | + | chr1.3:68574460-68574479 | None:intergenic | 10.0% |
| !! | GTTTAGGTATATTATATTAA+TGG | + | chr1.3:68573916-68573935 | None:intergenic | 15.0% |
| !! | TCTGTTGAATTAATATTAAA+TGG | + | chr1.3:68575010-68575029 | None:intergenic | 15.0% |
| !! | TGGTAAAAATAAAAAATAGA+TGG | + | chr1.3:68574990-68575009 | None:intergenic | 15.0% |
| !! | TTATAAGTAGGAATTTATTA+AGG | + | chr1.3:68574240-68574259 | None:intergenic | 15.0% |
| !!! | ATAAATTTTCTTAAAAAGTG+CGG | + | chr1.3:68573251-68573270 | None:intergenic | 15.0% |
| !!! | ATAACTATCTAATTTAACTT+AGG | + | chr1.3:68573280-68573299 | None:intergenic | 15.0% |
| !!! | GTCATTATTTTATTTAACTA+TGG | - | chr1.3:68573994-68574013 | MS.gene49167:intron | 15.0% |
| !!! | GTTTTTTTTTCAATTAGTTA+AGG | - | chr1.3:68575236-68575255 | MS.gene49167:intron | 15.0% |
| !!! | TAACTATCTAATTTAACTTA+GGG | + | chr1.3:68573279-68573298 | None:intergenic | 15.0% |
| !! | AAAAAAAAAGAAGGAGAAAT+TGG | - | chr1.3:68573653-68573672 | MS.gene49167:intron | 20.0% |
| !! | AATATACTTGGTTCAAAATT+TGG | - | chr1.3:68574346-68574365 | MS.gene49167:CDS | 20.0% |
| !! | AATATTAATTCAACAGAGAA+GGG | - | chr1.3:68575013-68575032 | MS.gene49167:intron | 20.0% |
| !! | AATTATCAAAATCATGAGAA+TGG | - | chr1.3:68575290-68575309 | MS.gene49167:intron | 20.0% |
| !! | ACTTAGGAACTAATTAATAT+AGG | - | chr1.3:68573736-68573755 | MS.gene49167:intron | 20.0% |
| !! | AGAAAAAGATATTATGCAAA+TGG | + | chr1.3:68575674-68575693 | None:intergenic | 20.0% |
| !! | ATATTCAATAATACTCTATC+CGG | + | chr1.3:68574418-68574437 | None:intergenic | 20.0% |
| !! | CTATTATAGTAGAAGATTAT+AGG | + | chr1.3:68574047-68574066 | None:intergenic | 20.0% |
| !! | CTTAGGAACTAATTAATATA+GGG | - | chr1.3:68573737-68573756 | MS.gene49167:intron | 20.0% |
| !! | GGAATTAATTACAAAATAGT+CGG | - | chr1.3:68573350-68573369 | MS.gene49167:intron | 20.0% |
| !! | TAATAGCATCAAAAGAAATA+TGG | + | chr1.3:68575521-68575540 | None:intergenic | 20.0% |
| !! | TAATATTAATTCAACAGAGA+AGG | - | chr1.3:68575012-68575031 | MS.gene49167:intron | 20.0% |
| !! | TCAACAAAAGTTAATATACT+TGG | - | chr1.3:68574334-68574353 | MS.gene49167:CDS | 20.0% |
| !!! | ATTGATTTTTTTTACGTCAT+TGG | - | chr1.3:68574717-68574736 | MS.gene49167:intron | 20.0% |
| !!! | CAAGTAGTTTATTTTAGAAA+AGG | + | chr1.3:68573941-68573960 | None:intergenic | 20.0% |
| !!! | TAAATTTTCTTAAAAAGTGC+GGG | + | chr1.3:68573250-68573269 | None:intergenic | 20.0% |
| !!! | TGTATGTACTGATATTTATA+AGG | + | chr1.3:68573708-68573727 | None:intergenic | 20.0% |
| !!! | TGTATTAAAGTTTTATTAGC+CGG | + | chr1.3:68574870-68574889 | None:intergenic | 20.0% |
| !!! | TTGATTTTTTTTACGTCATT+GGG | - | chr1.3:68574718-68574737 | MS.gene49167:intron | 20.0% |
| ! | AAATGTCTCAAAAATATGAC+CGG | - | chr1.3:68574396-68574415 | MS.gene49167:intron | 25.0% |
| ! | AACTACAAAAACTCAACAAT+AGG | + | chr1.3:68574212-68574231 | None:intergenic | 25.0% |
| ! | ACAATAATTTAAGAGTCAAG+AGG | + | chr1.3:68575573-68575592 | None:intergenic | 25.0% |
| ! | ACTATCTACAGAACATTAAT+AGG | + | chr1.3:68574095-68574114 | None:intergenic | 25.0% |
| ! | ATGGCTACCTTAAATTAAAT+AGG | + | chr1.3:68575200-68575219 | None:intergenic | 25.0% |
| ! | ATTATTCCTATTCTTCTTCT+CGG | - | chr1.3:68575123-68575142 | MS.gene49167:intron | 25.0% |
| ! | ATTGTTGTCATTACTCTATA+AGG | + | chr1.3:68573583-68573602 | None:intergenic | 25.0% |
| ! | CATAAGTAATTTACCTTGAT+GGG | + | chr1.3:68575806-68575825 | None:intergenic | 25.0% |
| ! | CATCAAAAGAAATATGGTAA+CGG | + | chr1.3:68575515-68575534 | None:intergenic | 25.0% |
| ! | CTATTATTTATTTGAGTCCA+TGG | - | chr1.3:68575535-68575554 | MS.gene49167:intron | 25.0% |
| ! | TAAACACAAATCCAATATCA+GGG | + | chr1.3:68575874-68575893 | None:intergenic | 25.0% |
| ! | TACATACACAATAACTACTT+AGG | - | chr1.3:68573720-68573739 | MS.gene49167:intron | 25.0% |
| ! | TATCTATTCTCTCAATACTA+AGG | + | chr1.3:68573428-68573447 | None:intergenic | 25.0% |
| ! | TCATAAGTAATTTACCTTGA+TGG | + | chr1.3:68575807-68575826 | None:intergenic | 25.0% |
| ! | TGCAAATTATTGACAACTTT+AGG | - | chr1.3:68574137-68574156 | MS.gene49167:CDS | 25.0% |
| ! | TGGATTTGTGTTTAATATCA+AGG | - | chr1.3:68575880-68575899 | MS.gene49167:CDS | 25.0% |
| ! | TGTAATTAATTCCGAAACAT+CGG | + | chr1.3:68573343-68573362 | None:intergenic | 25.0% |
| ! | TTAAACACAAATCCAATATC+AGG | + | chr1.3:68575875-68575894 | None:intergenic | 25.0% |
| ! | TTTAATATCAAGGATGACAT+CGG | - | chr1.3:68575890-68575909 | MS.gene49167:CDS | 25.0% |
| !! | AGTTGTCAATAATTTGCATT+TGG | + | chr1.3:68574135-68574154 | None:intergenic | 25.0% |
| !! | CATGTTGCCTATTTAATTTA+AGG | - | chr1.3:68575190-68575209 | MS.gene49167:intron | 25.0% |
| !! | GTTGTCAATAATTTGCATTT+GGG | + | chr1.3:68574134-68574153 | None:intergenic | 25.0% |
| !! | TTAGTATTGAGAGAATAGAT+AGG | - | chr1.3:68573427-68573446 | MS.gene49167:intron | 25.0% |
| !! | TTATATTAATGGGTCGTTTA+AGG | + | chr1.3:68573905-68573924 | None:intergenic | 25.0% |
| !! | TTTTCAATTAGTTAAGGAGT+TGG | - | chr1.3:68575242-68575261 | MS.gene49167:intron | 25.0% |
| !!! | TATTTTAGAAAAGGTCGTTT+AGG | + | chr1.3:68573932-68573951 | None:intergenic | 25.0% |
| !!! | TCAACAAAAGTTGATATATC+TGG | + | chr1.3:68574373-68574392 | None:intergenic | 25.0% |
| !!! | TTTTTTCGATGAAGATCTAA+TGG | - | chr1.3:68575315-68575334 | MS.gene49167:intron | 25.0% |
| AACAAGAACCATATATGCTA+TGG | + | chr1.3:68575219-68575238 | None:intergenic | 30.0% | |
| AACTTACTTTGCTTGCTTTA+TGG | - | chr1.3:68575738-68575757 | MS.gene49167:intron | 30.0% | |
| AAGAATAGAACAGTTGTGAT+CGG | + | chr1.3:68574022-68574041 | None:intergenic | 30.0% | |
| AATATCAGGGAATTTATACG+GGG | + | chr1.3:68575861-68575880 | None:intergenic | 30.0% | |
| AGAGGGAGAAAAAAAAAAGA+AGG | - | chr1.3:68573644-68573663 | MS.gene49167:intron | 30.0% | |
| AGTCTAACTTTACTCGAATT+GGG | + | chr1.3:68573615-68573634 | None:intergenic | 30.0% | |
| ATAGTTAGCATTGCATACAT+AGG | + | chr1.3:68574581-68574600 | None:intergenic | 30.0% | |
| ATTGAGAGAATAGATAGGAT+AGG | - | chr1.3:68573432-68573451 | MS.gene49167:intron | 30.0% | |
| CAAGTTTATAACGGTGTTTA+TGG | - | chr1.3:68573177-68573196 | MS.gene49167:intron | 30.0% | |
| CAATATCAGGGAATTTATAC+GGG | + | chr1.3:68575862-68575881 | None:intergenic | 30.0% | |
| CCAATATCAGGGAATTTATA+CGG | + | chr1.3:68575863-68575882 | None:intergenic | 30.0% | |
| TAGTTAGCATTGCATACATA+GGG | + | chr1.3:68574580-68574599 | None:intergenic | 30.0% | |
| TATTATGCAAATGGACCAAT+CGG | + | chr1.3:68575665-68575684 | None:intergenic | 30.0% | |
| TCATTACTCTATAAGGCAAA+GGG | + | chr1.3:68573576-68573595 | None:intergenic | 30.0% | |
| TCCAAATGTCTCTCATAAAT+AGG | + | chr1.3:68574314-68574333 | None:intergenic | 30.0% | |
| TCCTATTTATGAGAGACATT+TGG | - | chr1.3:68574310-68574329 | MS.gene49167:CDS | 30.0% | |
| TGGTTGTTATCAATATCATG+AGG | - | chr1.3:68573673-68573692 | MS.gene49167:intron | 30.0% | |
| TTAATAACACCTATTCCCAT+TGG | - | chr1.3:68574287-68574306 | MS.gene49167:CDS | 30.0% | |
| TTGAGAGAATAGATAGGATA+GGG | - | chr1.3:68573433-68573452 | MS.gene49167:intron | 30.0% | |
| ! | AGTTACAGCTTAAAAGCTTT+TGG | - | chr1.3:68574550-68574569 | MS.gene49167:intron | 30.0% |
| ! | CTTTTAAGCTGTAACTGTAT+AGG | + | chr1.3:68574546-68574565 | None:intergenic | 30.0% |
| ! | TGTTTAATAGAGCACTTTAG+AGG | + | chr1.3:68575172-68575191 | None:intergenic | 30.0% |
| ! | TTAAGCTTTTACTGCAGAAT+TGG | + | chr1.3:68574271-68574290 | None:intergenic | 30.0% |
| !! | TTACTCTAAAATTTGCAGTC+CGG | - | chr1.3:68575695-68575714 | MS.gene49167:intron | 30.0% |
| !! | TTGGATACTGGTTTATAAGT+AGG | + | chr1.3:68574252-68574271 | None:intergenic | 30.0% |
| !!! | TAAAGTTTTATTAGCCGGTT+GGG | + | chr1.3:68574865-68574884 | None:intergenic | 30.0% |
| !!! | TTAAAGTTTTATTAGCCGGT+TGG | + | chr1.3:68574866-68574885 | None:intergenic | 30.0% |
| !!! | TTTTTTCTCCCTCTAAATCA+TGG | + | chr1.3:68573638-68573657 | None:intergenic | 30.0% |
| AACATATCCAACAACCTAGT+GGG | - | chr1.3:68575398-68575417 | MS.gene49167:intron | 35.0% | |
| AAGCAGCAGCAAGTTTATAA+CGG | - | chr1.3:68573168-68573187 | MS.gene49167:intron | 35.0% | |
| ACACGACATAAACTTGAAGA+AGG | + | chr1.3:68573096-68573115 | None:intergenic | 35.0% | |
| ACGATAATCTTCCGATGTTT+CGG | - | chr1.3:68573329-68573348 | MS.gene49167:intron | 35.0% | |
| ACTTAGGTTATCAGGCAAAT+AGG | + | chr1.3:68574679-68574698 | None:intergenic | 35.0% | |
| ACTTTGCTTGCTTTATGGAT+GGG | - | chr1.3:68575743-68575762 | MS.gene49167:intron | 35.0% | |
| AGTGTATCACTTAGGTTATC+AGG | + | chr1.3:68574687-68574706 | None:intergenic | 35.0% | |
| AGTTAGACTCCATGATTTAG+AGG | - | chr1.3:68573626-68573645 | MS.gene49167:intron | 35.0% | |
| CAGTATCTTCGAATCTTGTT+CGG | - | chr1.3:68573067-68573086 | MS.gene49167:CDS | 35.0% | |
| CATTTGGGTCTCTAAATTCA+AGG | + | chr1.3:68574119-68574138 | None:intergenic | 35.0% | |
| CCGTATAAATTCCCTGATAT+TGG | - | chr1.3:68575860-68575879 | MS.gene49167:CDS | 35.0% | |
| CTCTCATAAATAGGACCAAT+GGG | + | chr1.3:68574305-68574324 | None:intergenic | 35.0% | |
| GAGAGATTTGAACGTGAAAA+CGG | + | chr1.3:68575924-68575943 | None:intergenic | 35.0% | |
| GAGTCTAACTTTACTCGAAT+TGG | + | chr1.3:68573616-68573635 | None:intergenic | 35.0% | |
| GCATCTTGTATTCTTGAAAC+AGG | - | chr1.3:68575060-68575079 | MS.gene49167:intron | 35.0% | |
| GTCATTACTCTATAAGGCAA+AGG | + | chr1.3:68573577-68573596 | None:intergenic | 35.0% | |
| GTTAGACTCCATGATTTAGA+GGG | - | chr1.3:68573627-68573646 | MS.gene49167:intron | 35.0% | |
| TAAATAGGACCAATGGGAAT+AGG | + | chr1.3:68574299-68574318 | None:intergenic | 35.0% | |
| TAAGGTAGCCATAGCATATA+TGG | - | chr1.3:68575208-68575227 | MS.gene49167:intron | 35.0% | |
| TACTTTGCTTGCTTTATGGA+TGG | - | chr1.3:68575742-68575761 | MS.gene49167:intron | 35.0% | |
| TCTCTCATAAATAGGACCAA+TGG | + | chr1.3:68574306-68574325 | None:intergenic | 35.0% | |
| TGAGAGAATAGATAGGATAG+GGG | - | chr1.3:68573434-68573453 | MS.gene49167:intron | 35.0% | |
| TTATTGTCACCAATACCGAT+TGG | - | chr1.3:68575647-68575666 | MS.gene49167:intron | 35.0% | |
| TTGTTCCAGTTTCTCAATCA+AGG | + | chr1.3:68575966-68575985 | None:intergenic | 35.0% | |
| TTTACTGCAGAATTGGATAC+TGG | + | chr1.3:68574264-68574283 | None:intergenic | 35.0% | |
| TTTGCTTGAGTGTATCACTT+AGG | + | chr1.3:68574695-68574714 | None:intergenic | 35.0% | |
| ! | GGTCTTTTTGTGATATTTGC+CGG | - | chr1.3:68575764-68575783 | MS.gene49167:intron | 35.0% |
| ! | TTTTTGTGATATTTGCCGGA+AGG | - | chr1.3:68575768-68575787 | MS.gene49167:intron | 35.0% |
| !! | AAATGTTAACTTGTGCCCTT+GGG | - | chr1.3:68573760-68573779 | MS.gene49167:intron | 35.0% |
| !! | TTTGACAGGACTTGTTTTCA+AGG | - | chr1.3:68574944-68574963 | MS.gene49167:intron | 35.0% |
| !!! | TTTTTTTACGTCATTGGGTC+AGG | - | chr1.3:68574723-68574742 | MS.gene49167:intron | 35.0% |
| AATGAGTACTACTGTTGGTG+TGG | - | chr1.3:68573026-68573045 | MS.gene49167:CDS | 40.0% | |
| ACATATCCAACAACCTAGTG+GGG | - | chr1.3:68575399-68575418 | MS.gene49167:intron | 40.0% | |
| AGATGTCCGAGAAGAAGAAT+AGG | + | chr1.3:68575132-68575151 | None:intergenic | 40.0% | |
| AGGTTGTTGGATATGTTGCA+GGG | + | chr1.3:68575395-68575414 | None:intergenic | 40.0% | |
| ATCCACACTCACTTCTTGAT+CGG | + | chr1.3:68575625-68575644 | None:intergenic | 40.0% | |
| CAACATATCCAACAACCTAG+TGG | - | chr1.3:68575397-68575416 | MS.gene49167:intron | 40.0% | |
| CAAGGAATGAGTACTACTGT+TGG | - | chr1.3:68573021-68573040 | MS.gene49167:CDS | 40.0% | |
| CTTCTCCGAGAATCAGAATT+GGG | - | chr1.3:68573118-68573137 | MS.gene49167:intron | 40.0% | |
| GAAACATCGGAAGATTATCG+TGG | + | chr1.3:68573330-68573349 | None:intergenic | 40.0% | |
| GAAAGCCTTGATTGAGAAAC+TGG | - | chr1.3:68575958-68575977 | MS.gene49167:CDS | 40.0% | |
| GAGTTCAGTGCAATCATGAT+AGG | + | chr1.3:68575474-68575493 | None:intergenic | 40.0% | |
| GGCAAAGGGAATTACAATGA+TGG | + | chr1.3:68573562-68573581 | None:intergenic | 40.0% | |
| TAGGTTATCAGGCAAATAGG+CGG | + | chr1.3:68574676-68574695 | None:intergenic | 40.0% | |
| TAGGTTGTTGGATATGTTGC+AGG | + | chr1.3:68575396-68575415 | None:intergenic | 40.0% | |
| TAGTACCTCTTTGACATCCT+CGG | + | chr1.3:68573220-68573239 | None:intergenic | 40.0% | |
| TATTCTTCTTCTCGGACATC+TGG | - | chr1.3:68575131-68575150 | MS.gene49167:intron | 40.0% | |
| TCTTCTCCGAGAATCAGAAT+TGG | - | chr1.3:68573117-68573136 | MS.gene49167:intron | 40.0% | |
| TGCAGGGCTAGAAAGAATTT+GGG | + | chr1.3:68575379-68575398 | None:intergenic | 40.0% | |
| TTCAGTGCAATCATGATAGG+AGG | + | chr1.3:68575471-68575490 | None:intergenic | 40.0% | |
| TTCCTTAACTTATGCCCCAA+GGG | + | chr1.3:68573778-68573797 | None:intergenic | 40.0% | |
| TTGCAGGGCTAGAAAGAATT+TGG | + | chr1.3:68575380-68575399 | None:intergenic | 40.0% | |
| TTTAAGAGTCAAGAGGACGA+TGG | + | chr1.3:68575566-68575585 | None:intergenic | 40.0% | |
| ! | AAATTTGCAGTCCGGTTTGA+TGG | - | chr1.3:68575703-68575722 | MS.gene49167:intron | 40.0% |
| ! | GCTAGAAAGAATTTGGGTTC+TGG | + | chr1.3:68575373-68575392 | None:intergenic | 40.0% |
| ! | TATATCGTACCGATCAGGAT+TGG | - | chr1.3:68574614-68574633 | MS.gene49167:intron | 40.0% |
| !! | AATGTTAACTTGTGCCCTTG+GGG | - | chr1.3:68573761-68573780 | MS.gene49167:intron | 40.0% |
| !! | ACAGGACTTGTTTTCAAGGA+AGG | - | chr1.3:68574948-68574967 | MS.gene49167:intron | 40.0% |
| !! | GAAATGTTAACTTGTGCCCT+TGG | - | chr1.3:68573759-68573778 | MS.gene49167:intron | 40.0% |
| ACACACTACACTGTGTTTGC+TGG | + | chr1.3:68574515-68574534 | None:intergenic | 45.0% | |
| ACCGACCCAATTCTGATTCT+CGG | + | chr1.3:68573126-68573145 | None:intergenic | 45.0% | |
| ACTCACTTCTTGATCGGTGA+AGG | + | chr1.3:68575619-68575638 | None:intergenic | 45.0% | |
| AGAGGACGATGGAAAATCCA+TGG | + | chr1.3:68575555-68575574 | None:intergenic | 45.0% | |
| CAGCTGTTACCAATCCTGAT+CGG | + | chr1.3:68574626-68574645 | None:intergenic | 45.0% | |
| CCTGTCAAAGCAGCAAAAAG+AGG | + | chr1.3:68574933-68574952 | None:intergenic | 45.0% | |
| CGGTGAAGGTAAACGAAATG+CGG | + | chr1.3:68575605-68575624 | None:intergenic | 45.0% | |
| CTTCCTTAACTTATGCCCCA+AGG | + | chr1.3:68573779-68573798 | None:intergenic | 45.0% | |
| CTTGAAACAGGACTCTGCTA+CGG | - | chr1.3:68575072-68575091 | MS.gene49167:intron | 45.0% | |
| GAAATTCACTCAGCCCATCA+AGG | - | chr1.3:68575790-68575809 | MS.gene49167:CDS | 45.0% | |
| GAATCAGAATTGGGTCGGTA+CGG | - | chr1.3:68573127-68573146 | MS.gene49167:intron | 45.0% | |
| GCAAATGGACCAATCGGTAT+TGG | + | chr1.3:68575659-68575678 | None:intergenic | 45.0% | |
| GGAGGCTGTTACTAGCAATA+AGG | + | chr1.3:68575453-68575472 | None:intergenic | 45.0% | |
| GGTACGATATAACCTGCCAT+GGG | + | chr1.3:68574605-68574624 | None:intergenic | 45.0% | |
| TCCGAGAATCAGAATTGGGT+CGG | - | chr1.3:68573122-68573141 | MS.gene49167:intron | 45.0% | |
| TGCAATGCTAACTATGCCCA+TGG | - | chr1.3:68574586-68574605 | MS.gene49167:intron | 45.0% | |
| TTTACGTCATTGGGTCAGGT+GGG | - | chr1.3:68574727-68574746 | MS.gene49167:intron | 45.0% | |
| TTTATTAGCCGGTTGGGCAA+GGG | + | chr1.3:68574859-68574878 | None:intergenic | 45.0% | |
| TTTGACATCCTCGGCTTCAA+CGG | + | chr1.3:68573211-68573230 | None:intergenic | 45.0% | |
| ! | AGGCTTTCTTTTCGTCATCG+CGG | + | chr1.3:68575946-68575965 | None:intergenic | 45.0% |
| ! | ATCAGGATTGGTAACAGCTG+CGG | - | chr1.3:68574626-68574645 | MS.gene49167:intron | 45.0% |
| ! | CAGGTTATATCGTACCGATC+AGG | - | chr1.3:68574609-68574628 | MS.gene49167:intron | 45.0% |
| ! | TTGATAACCCATCAGCTGTC+TGG | - | chr1.3:68574898-68574917 | MS.gene49167:intron | 45.0% |
| ! | TTTTACGTCATTGGGTCAGG+TGG | - | chr1.3:68574726-68574745 | MS.gene49167:intron | 45.0% |
| ! | TTTTATTAGCCGGTTGGGCA+AGG | + | chr1.3:68574860-68574879 | None:intergenic | 45.0% |
| !!! | CCTCTTTTTGCTGCTTTGAC+AGG | - | chr1.3:68574930-68574949 | MS.gene49167:intron | 45.0% |
| AGCGCACTCTGCAAGCATTA+TGG | - | chr1.3:68574796-68574815 | MS.gene49167:intron | 50.0% | |
| AGTTCCGTCGTCCATCAAAC+CGG | + | chr1.3:68575717-68575736 | None:intergenic | 50.0% | |
| ATAACGGTGTTTATGGCCCC+TGG | - | chr1.3:68573184-68573203 | MS.gene49167:intron | 50.0% | |
| ATGCTAACTATGCCCATGGC+AGG | - | chr1.3:68574590-68574609 | MS.gene49167:intron | 50.0% | |
| CAATGAGCCAGACAGCTGAT+GGG | + | chr1.3:68574908-68574927 | None:intergenic | 50.0% | |
| CACCGATCAAGAAGTGAGTG+TGG | - | chr1.3:68575620-68575639 | MS.gene49167:intron | 50.0% | |
| CGCACTCTGCAAGCATTATG+GGG | - | chr1.3:68574798-68574817 | MS.gene49167:intron | 50.0% | |
| CGGTACGATATAACCTGCCA+TGG | + | chr1.3:68574606-68574625 | None:intergenic | 50.0% | |
| GAGTACTACTGTTGGTGTGG+CGG | - | chr1.3:68573029-68573048 | MS.gene49167:CDS | 50.0% | |
| GCGCACTCTGCAAGCATTAT+GGG | - | chr1.3:68574797-68574816 | MS.gene49167:intron | 50.0% | |
| GGGCTGAGTGAATTTCCTTC+CGG | + | chr1.3:68575786-68575805 | None:intergenic | 50.0% | |
| TATCCAACAACCTAGTGGGG+TGG | - | chr1.3:68575402-68575421 | MS.gene49167:intron | 50.0% | |
| TGAAGCCGAGGATGTCAAAG+AGG | - | chr1.3:68573212-68573231 | MS.gene49167:CDS | 50.0% | |
| TGCCCTTGGGGCATAAGTTA+AGG | - | chr1.3:68573773-68573792 | MS.gene49167:intron | 50.0% | |
| CCAATGAGCCAGACAGCTGA+TGG | + | chr1.3:68574909-68574928 | None:intergenic | 55.0% | |
| CTACATCACCCTTGCCCAAC+CGG | - | chr1.3:68574848-68574867 | MS.gene49167:intron | 55.0% | |
| CTGCAAGCATTATGGGGCCT+CGG | - | chr1.3:68574804-68574823 | MS.gene49167:intron | 55.0% | |
| TCATCTGCAGCCCTGCAGAT+TGG | + | chr1.3:68575429-68575448 | None:intergenic | 55.0% | |
| TGCAAGCATTATGGGGCCTC+GGG | - | chr1.3:68574805-68574824 | MS.gene49167:intron | 55.0% | |
| TGCTACGGCAAGCTAGAAGC+TGG | - | chr1.3:68575087-68575106 | MS.gene49167:intron | 55.0% | |
| TGGGTCGGTACGGTGTAAAG+CGG | - | chr1.3:68573137-68573156 | MS.gene49167:intron | 55.0% | |
| ! | CAGTCCGGTTTGATGGACGA+CGG | - | chr1.3:68575710-68575729 | MS.gene49167:intron | 55.0% |
| ! | CCATCAGCTGTCTGGCTCAT+TGG | - | chr1.3:68574906-68574925 | MS.gene49167:intron | 55.0% |
| ! | GTCATTGGGTCAGGTGGGTT+GGG | - | chr1.3:68574732-68574751 | MS.gene49167:intron | 55.0% |
| AGTGGGGTGGACCAATCTGC+AGG | - | chr1.3:68575415-68575434 | MS.gene49167:intron | 60.0% | |
| ATCCTCGGCTTCAACGGTCC+AGG | + | chr1.3:68573205-68573224 | None:intergenic | 60.0% | |
| CAGCTGATCCAAGAACCCCG+AGG | + | chr1.3:68574824-68574843 | None:intergenic | 60.0% | |
| CGGTTGGGCAAGGGTGATGT+AGG | + | chr1.3:68574850-68574869 | None:intergenic | 60.0% | |
| CGTCATTGGGTCAGGTGGGT+TGG | - | chr1.3:68574731-68574750 | MS.gene49167:intron | 60.0% | |
| GCAAGCATTATGGGGCCTCG+GGG | - | chr1.3:68574806-68574825 | MS.gene49167:intron | 60.0% | |
| GGTCCACCCCACTAGGTTGT+TGG | + | chr1.3:68575408-68575427 | None:intergenic | 60.0% | |
| GTCGGTACGGTGTAAAGCGG+CGG | - | chr1.3:68573140-68573159 | MS.gene49167:intron | 60.0% | |
| GTGGGGTGGACCAATCTGCA+GGG | - | chr1.3:68575416-68575435 | MS.gene49167:intron | 60.0% | |
| TCCTCGGCTTCAACGGTCCA+GGG | + | chr1.3:68573204-68573223 | None:intergenic | 60.0% | |
| TCGGTACGGTGTAAAGCGGC+GGG | - | chr1.3:68573141-68573160 | MS.gene49167:intron | 60.0% | |
| TTATGGGGCCTCGGGGTTCT+TGG | - | chr1.3:68574813-68574832 | MS.gene49167:intron | 60.0% | |
| ! | GCAGATTGGTCCACCCCACT+AGG | + | chr1.3:68575415-68575434 | None:intergenic | 60.0% |
| CCTCGGCTTCAACGGTCCAG+GGG | + | chr1.3:68573203-68573222 | None:intergenic | 65.0% | |
| CCCCTGGACCGTTGAAGCCG+AGG | - | chr1.3:68573200-68573219 | MS.gene49167:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 68573009 | 68576003 | 68573009 | ID=MS.gene49167 |
| chr1.3 | mRNA | 68573009 | 68576003 | 68573009 | ID=MS.gene49167.t1;Parent=MS.gene49167 |
| chr1.3 | exon | 68575779 | 68576003 | 68575779 | ID=MS.gene49167.t1.exon1;Parent=MS.gene49167.t1 |
| chr1.3 | CDS | 68575779 | 68576003 | 68575779 | ID=cds.MS.gene49167.t1;Parent=MS.gene49167.t1 |
| chr1.3 | exon | 68574043 | 68574400 | 68574043 | ID=MS.gene49167.t1.exon2;Parent=MS.gene49167.t1 |
| chr1.3 | CDS | 68574043 | 68574400 | 68574043 | ID=cds.MS.gene49167.t1;Parent=MS.gene49167.t1 |
| chr1.3 | exon | 68573860 | 68573930 | 68573860 | ID=MS.gene49167.t1.exon3;Parent=MS.gene49167.t1 |
| chr1.3 | CDS | 68573860 | 68573930 | 68573860 | ID=cds.MS.gene49167.t1;Parent=MS.gene49167.t1 |
| chr1.3 | exon | 68573201 | 68573299 | 68573201 | ID=MS.gene49167.t1.exon4;Parent=MS.gene49167.t1 |
| chr1.3 | CDS | 68573201 | 68573299 | 68573201 | ID=cds.MS.gene49167.t1;Parent=MS.gene49167.t1 |
| chr1.3 | exon | 68573009 | 68573110 | 68573009 | ID=MS.gene49167.t1.exon5;Parent=MS.gene49167.t1 |
| chr1.3 | CDS | 68573009 | 68573110 | 68573009 | ID=cds.MS.gene49167.t1;Parent=MS.gene49167.t1 |
| Gene Sequence |
| Protein sequence |
