AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055751


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055751.t1 MTR_4g063705 97.188 320 6 2 1 320 1 317 0.0 629
MS.gene055751.t1 MTR_3g086250 55.389 334 131 3 1 320 1 330 4.19e-120 356
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055751.t1 AT2G28800 81.728 301 48 3 24 320 40 337 9.97e-180 500
MS.gene055751.t1 AT2G28800 81.728 301 48 3 24 320 40 337 1.39e-179 500
MS.gene055751.t1 AT2G28800 81.728 301 48 3 24 320 40 337 3.38e-179 503
MS.gene055751.t1 AT2G28800 72.093 301 47 4 24 320 40 307 5.00e-150 428
MS.gene055751.t1 AT1G24490 69.231 260 80 0 61 320 62 321 1.61e-126 371
MS.gene055751.t1 AT1G24490 57.308 260 74 1 61 320 62 284 7.91e-95 289

Find 98 sgRNAs with CRISPR-Local

Find 319 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTGTTACTCAGATATTAA+AGG 0.240430 4.4:+42338532 MS.gene055751:intron
AGGATTGAATTGGTGGAATT+TGG 0.254625 4.4:-42337593 None:intergenic
CATCAGGACTAACAATTTAC+TGG 0.275942 4.4:+42341860 MS.gene055751:CDS
GCAGGATGGCCATCCACCTT+TGG 0.313210 4.4:+42341593 MS.gene055751:intron
TGCCATGGAGTTTGTTCTTA+AGG 0.317066 4.4:+42337776 MS.gene055751:CDS
TGTTAACAGAAGGTTTCTTA+TGG 0.318050 4.4:+42339451 MS.gene055751:CDS
AAACCTTCAACCTAAAATTA+AGG 0.326230 4.4:+42338886 MS.gene055751:CDS
ATAGCAAATCCATACGAATA+AGG 0.348748 4.4:-42338578 None:intergenic
ACTCATTCTATTGATGTTAC+CGG 0.363596 4.4:+42337618 MS.gene055751:CDS
ATTGCTCACTCTTATTGTTA+AGG 0.371624 4.4:+42338604 MS.gene055751:CDS
AACACCCCTCACCTGATTGC+CGG 0.380738 4.4:-42338927 None:intergenic
CAGGATGGCCATCCACCTTT+GGG 0.383616 4.4:+42341594 MS.gene055751:intron
TATATAGTCTGGTACGGTTA+GGG 0.385089 4.4:-42337548 None:intergenic
GTATATAGTCTGGTACGGTT+AGG 0.386944 4.4:-42337549 None:intergenic
TGAGAAAGAATAAGAAGAAC+AGG 0.394821 4.4:-42341648 None:intergenic
CAGAAGAACGGAGGTTGGTT+TGG 0.403635 4.4:+42337741 MS.gene055751:CDS
GAATGAGTTAAGGATTGAAT+TGG 0.407264 4.4:-42337603 None:intergenic
GAATACAACTTGAGACTTCA+AGG 0.408158 4.4:+42339067 MS.gene055751:CDS
CCAAGCTGGGGTTAACCCTT+TGG 0.412436 4.4:+42339098 MS.gene055751:CDS
GCTCGCCGATGCCGCCGTTA+CGG 0.412973 4.4:+42337674 MS.gene055751:CDS
AAAGTGGATCCGGAATTTCT+TGG 0.421708 4.4:+42339514 MS.gene055751:CDS
TCTTTCTCAATATGTTTCAA+TGG 0.427391 4.4:+42341662 MS.gene055751:CDS
GCTACTATTCCCGTCTGGAT+TGG 0.430547 4.4:+42339293 MS.gene055751:CDS
ACTTCCTTTGACAAAGCAAC+AGG 0.431867 4.4:+42338634 MS.gene055751:CDS
TATAGGTTGTTTACCGACTT+TGG 0.435935 4.4:+42339271 MS.gene055751:intron
GCCGGCATATCTTTCTTGAA+TGG 0.437024 4.4:-42338909 None:intergenic
AAAGGATAGCTTACCACAAA+TGG 0.446577 4.4:-42339543 None:intergenic
AGAAAGATATGCCGGCAATC+AGG 0.452072 4.4:+42338916 MS.gene055751:CDS
TCAAGGCTATATACCCAAGC+TGG 0.459348 4.4:+42339084 MS.gene055751:CDS
GTGAACTTTGGTATATAGTC+TGG 0.466563 4.4:-42337559 None:intergenic
ATCGGCCGTAACGGCGGCAT+CGG 0.468950 4.4:-42337679 None:intergenic
AACATCAATAGAATGAGTTA+AGG 0.469067 4.4:-42337613 None:intergenic
TTCTTATGGATCCCTTCTCT+CGG 0.470607 4.4:+42339465 MS.gene055751:CDS
CTTTGGCTACTATTCCCGTC+TGG 0.472299 4.4:+42339288 MS.gene055751:CDS
CACAGCAACATCCGTGGAAG+TGG 0.479567 4.4:-42337718 None:intergenic
TTTATCTAATGTGGCAAATG+AGG 0.481648 4.4:+42339328 MS.gene055751:CDS
AAGTTGTTGCGGTGAAGTGA+AGG 0.492325 4.4:-42337522 None:intergenic
TGAGTTAAGGATTGAATTGG+TGG 0.495040 4.4:-42337600 None:intergenic
TTCTCACTATCTGTGCCATC+AGG 0.496768 4.4:+42341844 MS.gene055751:CDS
TTGCCACATTAGATAAAGCT+TGG 0.497398 4.4:-42339322 None:intergenic
CACTTCCACTTCCACTTCCA+CGG 0.497958 4.4:+42337707 MS.gene055751:CDS
ATGGCCATCCACCTTTGGGT+TGG 0.506568 4.4:+42341598 MS.gene055751:CDS
CAAAGGGTTAACCCCAGCTT+GGG 0.507179 4.4:-42339097 None:intergenic
ATTTCATCTCCATCGTTCCT+CGG 0.507658 4.4:+42337489 MS.gene055751:CDS
AACATCCGTGGAAGTGGAAG+TGG 0.509079 4.4:-42337712 None:intergenic
ATTGAATTGGTGGAATTTGG+TGG 0.511544 4.4:-42337590 None:intergenic
ATAAAGAAGTCCTTCAGCTC+TGG 0.512310 4.4:-42337649 None:intergenic
GCTGCTAGACAAAGTGGATC+CGG 0.517710 4.4:+42339504 MS.gene055751:CDS
CAGTAAATTGTTAGTCCTGA+TGG 0.520024 4.4:-42341859 None:intergenic
CTAACCTGTTGCTTTGTCAA+AGG 0.522023 4.4:-42338638 None:intergenic
GCTGGGGTTAACCCTTTGGC+AGG 0.522528 4.4:+42339102 MS.gene055751:CDS
AAGTTTCTTCCACTCATGAT+CGG 0.524406 4.4:+42341817 MS.gene055751:CDS
CCAAAGGGTTAACCCCAGCT+TGG 0.524993 4.4:-42339098 None:intergenic
GTGGAAACTGAAGTGAACTT+TGG 0.525784 4.4:-42337571 None:intergenic
GCCATTCAAGAAAGATATGC+CGG 0.529950 4.4:+42338908 MS.gene055751:CDS
GTGCATGTGCCTTATTCGTA+TGG 0.532237 4.4:+42338569 MS.gene055751:CDS
TTGCGGTGAAGTGAAGGAAG+TGG 0.533549 4.4:-42337516 None:intergenic
ATATAACTGTACCTGCCAAA+GGG 0.541020 4.4:-42339113 None:intergenic
GGTGTCTTCGCCAGAGCTGA+AGG 0.553352 4.4:+42337639 MS.gene055751:CDS
TTGAAGGGACTGTTAACAGA+AGG 0.553996 4.4:+42339441 MS.gene055751:intron
AGCATTGCTGCTAGACAAAG+TGG 0.554199 4.4:+42339498 MS.gene055751:CDS
CTTTGGTATATAGTCTGGTA+CGG 0.556415 4.4:-42337554 None:intergenic
CAAGGCTATATACCCAAGCT+GGG 0.556897 4.4:+42339085 MS.gene055751:CDS
ATACCAAGCTTTATCTAATG+TGG 0.557798 4.4:+42339319 MS.gene055751:CDS
CTAGTGGGACCACCGAGAGA+AGG 0.560903 4.4:-42339477 None:intergenic
GAGAAGTAGCCGATCATGAG+TGG 0.561223 4.4:-42341826 None:intergenic
CTGTGCAGAAGAACGGAGGT+TGG 0.565225 4.4:+42337736 MS.gene055751:CDS
GATATAACTGTACCTGCCAA+AGG 0.566849 4.4:-42339114 None:intergenic
TAGTGGGACCACCGAGAGAA+GGG 0.572027 4.4:-42339476 None:intergenic
AGTGACTGCATCGGCCGTAA+CGG 0.580459 4.4:-42337688 None:intergenic
GTTACTCAGATATTAAAGGA+TGG 0.583255 4.4:+42338536 MS.gene055751:intron
TTATGGATCCCTTCTCTCGG+TGG 0.585688 4.4:+42339468 MS.gene055751:CDS
GATGTTGCTGTGCAGAAGAA+CGG 0.586401 4.4:+42337729 MS.gene055751:CDS
CCTGACATGCTTACCTGAGG+TGG 0.590658 4.4:-42341696 None:intergenic
GGAAATCATGAAACCACCTC+AGG 0.590966 4.4:+42341683 MS.gene055751:CDS
AAGAACAAACTCCATGGCAT+CGG 0.591393 4.4:-42337772 None:intergenic
CATGCCAACCCAAAGGTGGA+TGG 0.591741 4.4:-42341602 None:intergenic
TTCAGCTCTGGCGAAGACAC+CGG 0.593369 4.4:-42337637 None:intergenic
TGTCTAGCAGCAATGCTAGT+GGG 0.599990 4.4:-42339492 None:intergenic
AGTGGAGTTCCGAGGAACGA+TGG 0.603205 4.4:-42337498 None:intergenic
GACTGCATCGGCCGTAACGG+CGG 0.605216 4.4:-42337685 None:intergenic
TGAAATCAGTGTCTTCGCCA+TGG 0.606830 4.4:-42337472 None:intergenic
TGGTATAGACCAATCCAGAC+GGG 0.615542 4.4:-42339302 None:intergenic
TTGTCTAGCAGCAATGCTAG+TGG 0.618690 4.4:-42339493 None:intergenic
TACCTTAAGAACAAACTCCA+TGG 0.622891 4.4:-42337778 None:intergenic
GGAAGTGGAAGTGACTGCAT+CGG 0.629612 4.4:-42337697 None:intergenic
GTGAAGGAAGTGGAGTTCCG+AGG 0.644425 4.4:-42337506 None:intergenic
TTGGTATAGACCAATCCAGA+CGG 0.649063 4.4:-42339303 None:intergenic
ATATAGTCTGGTACGGTTAG+GGG 0.652620 4.4:-42337547 None:intergenic
GTGTCATGCCAACCCAAAGG+TGG 0.654970 4.4:-42341606 None:intergenic
CTTTGTCAAAGGAAGTGTAG+CGG 0.665172 4.4:-42338627 None:intergenic
CTTCTGCACAGCAACATCCG+TGG 0.668398 4.4:-42337724 None:intergenic
ACGGGAATAGTAGCCAAAGT+CGG 0.680935 4.4:-42339284 None:intergenic
GGTTAGGGGAGAAGTTGTTG+CGG 0.683683 4.4:-42337533 None:intergenic
ATACGAATAAGGCACATGCA+CGG 0.688460 4.4:-42338567 None:intergenic
GCAGTGTCATGCCAACCCAA+AGG 0.709975 4.4:-42341609 None:intergenic
AAGGCTATATACCCAAGCTG+GGG 0.714930 4.4:+42339086 MS.gene055751:CDS
GTTGCTGTGCAGAAGAACGG+AGG 0.748792 4.4:+42337732 MS.gene055751:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACAATTTGTAAAAAAAAA+GGG - chr4.4:42340915-42340934 None:intergenic 10.0%
!! ATATTTACTTAAGAATAAAT+TGG - chr4.4:42338976-42338995 None:intergenic 10.0%
!! TAAAAAAAAAAAAAAAAACC+TGG - chr4.4:42340289-42340308 None:intergenic 10.0%
!! TTTATTTATTTATATCAGTA+TGG + chr4.4:42341426-42341445 MS.gene055751:intron 10.0%
!!! TTTTTTTTTTTTTAATGGTT+GGG + chr4.4:42340295-42340314 MS.gene055751:intron 10.0%
!!! TTTTTTTTTTTTTTAATGGT+TGG + chr4.4:42340294-42340313 MS.gene055751:intron 10.0%
!! GAAACAATTTGTAAAAAAAA+AGG - chr4.4:42340916-42340935 None:intergenic 15.0%
!! GTAAAAAAAAAAAGTAAGTT+AGG - chr4.4:42341756-42341775 None:intergenic 15.0%
!! TTTATTTCATATACTTTCTT+TGG - chr4.4:42337887-42337906 None:intergenic 15.0%
!!! ATTGAAAACTTTTAATTTGA+AGG + chr4.4:42339425-42339444 MS.gene055751:intron 15.0%
!!! TTAGTTTCTTTATAGTTTTA+CGG + chr4.4:42341195-42341214 MS.gene055751:intron 15.0%
!!! TTGAAAACTTTTAATTTGAA+GGG + chr4.4:42339426-42339445 MS.gene055751:intron 15.0%
!! AAAATAAACTGAAAACAGTT+TGG + chr4.4:42337924-42337943 MS.gene055751:intron 20.0%
!! AAATAAACTGAAAACAGTTT+GGG + chr4.4:42337925-42337944 MS.gene055751:intron 20.0%
!! AAATTGAAAAACTAAAGTAC+GGG - chr4.4:42340590-42340609 None:intergenic 20.0%
!! AACAAAATCCTTATATAGTA+AGG - chr4.4:42338043-42338062 None:intergenic 20.0%
!! ATGCTATTAATTCTCATAAA+AGG - chr4.4:42340469-42340488 None:intergenic 20.0%
!! CAAATTGAAAAACTAAAGTA+CGG - chr4.4:42340591-42340610 None:intergenic 20.0%
!! CATATGCATAACTTATAAAA+AGG - chr4.4:42339834-42339853 None:intergenic 20.0%
!! CATTAAAAACAAACCATAAA+TGG + chr4.4:42338729-42338748 MS.gene055751:intron 20.0%
!! CCAAAAAAAAAAACCATAAA+TGG + chr4.4:42338761-42338780 MS.gene055751:intron 20.0%
!! TATAAAGAAACTAATTGATG+TGG - chr4.4:42341189-42341208 None:intergenic 20.0%
!! TCATGAAATTTGTATTATTG+AGG + chr4.4:42338073-42338092 MS.gene055751:intron 20.0%
!! TGCTATTAATTCTCATAAAA+GGG - chr4.4:42340468-42340487 None:intergenic 20.0%
!! TGGAAATGTATACATATAAA+TGG + chr4.4:42338326-42338345 MS.gene055751:intron 20.0%
!! TGTTATGTTATATTGTATAG+CGG - chr4.4:42341554-42341573 None:intergenic 20.0%
!!! AGTTTTCTTCTACATTTTTT+TGG + chr4.4:42341372-42341391 MS.gene055751:intron 20.0%
!!! ATTTGTTTTTATGTGATCTT+TGG + chr4.4:42337958-42337977 MS.gene055751:intron 20.0%
!!! CCATTTATGGTTTTTTTTTT+TGG - chr4.4:42338764-42338783 None:intergenic 20.0%
!!! CTTATTTTCATAAGCTTTTA+TGG - chr4.4:42341024-42341043 None:intergenic 20.0%
!!! GCAATTTTATCATTTTGTAT+AGG + chr4.4:42339254-42339273 MS.gene055751:intron 20.0%
!!! TAGCGTTGTAATTTTTTTTT+TGG + chr4.4:42340618-42340637 MS.gene055751:intron 20.0%
!!! TAGTTTTGTTTTCCTTTTTA+TGG - chr4.4:42338444-42338463 None:intergenic 20.0%
!!! TCAGTTTATTTTCATAAGTT+CGG - chr4.4:42337916-42337935 None:intergenic 20.0%
!!! TGACTTTATTTAATACATGT+AGG + chr4.4:42338841-42338860 MS.gene055751:intron 20.0%
!!! TGTTTTTCTCAAAAAAAAAG+AGG - chr4.4:42340443-42340462 None:intergenic 20.0%
! AAAAAGAAAGTGAGAAAAGA+GGG - chr4.4:42341343-42341362 None:intergenic 25.0%
! AAACATGACCTTACTATATA+AGG + chr4.4:42338032-42338051 MS.gene055751:intron 25.0%
! AAACCTTCAACCTAAAATTA+AGG + chr4.4:42338886-42338905 MS.gene055751:CDS 25.0%
! AACAAGCAAAATGATTTACT+AGG - chr4.4:42341153-42341172 None:intergenic 25.0%
! AACATCAATAGAATGAGTTA+AGG - chr4.4:42337616-42337635 None:intergenic 25.0%
! AACATTTGCAATATCATAAC+TGG + chr4.4:42339215-42339234 MS.gene055751:intron 25.0%
! ACAAGCAAAATGATTTACTA+GGG - chr4.4:42341152-42341171 None:intergenic 25.0%
! ACATTTGCAATATCATAACT+GGG + chr4.4:42339216-42339235 MS.gene055751:intron 25.0%
! ACTTTAGTATTTCTTCTCTT+TGG + chr4.4:42341313-42341332 MS.gene055751:intron 25.0%
! AGTTGAGATGAAAATGATAA+AGG - chr4.4:42339149-42339168 None:intergenic 25.0%
! ATCATTTATCAAGATGTAGT+AGG + chr4.4:42341492-42341511 MS.gene055751:intron 25.0%
! CAAATTACAGCAATTTCTAT+AGG + chr4.4:42338663-42338682 MS.gene055751:intron 25.0%
! CATGTAAAATAGCCATAAAA+AGG + chr4.4:42338429-42338448 MS.gene055751:intron 25.0%
! CTGAAAGAAAAATCCATTTA+TGG - chr4.4:42338777-42338796 None:intergenic 25.0%
! CTTAATAACTATGCATGAAT+AGG - chr4.4:42340561-42340580 None:intergenic 25.0%
! GTAAATAATAAGGAAAGAGA+AGG - chr4.4:42341725-42341744 None:intergenic 25.0%
! TAAAAAGAAAGTGAGAAAAG+AGG - chr4.4:42341344-42341363 None:intergenic 25.0%
! TACAAATTTCATGAATCTCA+AGG - chr4.4:42338067-42338086 None:intergenic 25.0%
! TCTTTCTCAATATGTTTCAA+TGG + chr4.4:42341662-42341681 MS.gene055751:CDS 25.0%
! TGTTGTTACTCAGATATTAA+AGG + chr4.4:42338532-42338551 MS.gene055751:intron 25.0%
! TTATATAGTAAGGTCATGTT+TGG - chr4.4:42338033-42338052 None:intergenic 25.0%
! TTTAAATGAGAACGATGTTA+AGG + chr4.4:42338185-42338204 MS.gene055751:intron 25.0%
! TTTCTCAAAAAACAAAGGTA+CGG - chr4.4:42340734-42340753 None:intergenic 25.0%
!! GTGTTTATAAGAGTGTATTT+AGG - chr4.4:42341128-42341147 None:intergenic 25.0%
!! TTTCATAAGCTTTTATGGAT+AGG - chr4.4:42341019-42341038 None:intergenic 25.0%
!! TTTCTCACTTTCTTTTTACA+GGG + chr4.4:42341346-42341365 MS.gene055751:intron 25.0%
!! TTTTCTCACTTTCTTTTTAC+AGG + chr4.4:42341345-42341364 MS.gene055751:intron 25.0%
!!! AATCATTTTGCTTGTTACAA+TGG + chr4.4:42341157-42341176 MS.gene055751:intron 25.0%
!!! ATACAAATTGTTTCTACCAA+GGG + chr4.4:42340116-42340135 MS.gene055751:intron 25.0%
!!! ATGATAACTCTAAAGCAAAA+GGG - chr4.4:42338412-42338431 None:intergenic 25.0%
!!! CGTACTTTAGTTTTTCAATT+TGG + chr4.4:42340589-42340608 MS.gene055751:intron 25.0%
!!! TATACAAATTGTTTCTACCA+AGG + chr4.4:42340115-42340134 MS.gene055751:intron 25.0%
!!! TATGGTTTTTTTTTTTGGAC+TGG - chr4.4:42338759-42338778 None:intergenic 25.0%
!!! TGTTTTTAATGTTTCAAACG+AGG - chr4.4:42338720-42338739 None:intergenic 25.0%
!!! TTTTTTTTAATGGTTGGGTA+CGG + chr4.4:42340300-42340319 MS.gene055751:intron 25.0%
AAGCAAAATGATTTACTAGG+GGG - chr4.4:42341150-42341169 None:intergenic 30.0%
ACGAGGTTATCATAATTTCA+TGG - chr4.4:42338703-42338722 None:intergenic 30.0%
ACTCATTCTATTGATGTTAC+CGG + chr4.4:42337618-42337637 MS.gene055751:CDS 30.0%
AGTAAATGTAACTAGGAAGT+AGG + chr4.4:42341261-42341280 MS.gene055751:intron 30.0%
ATAGCAAATCCATACGAATA+AGG - chr4.4:42338581-42338600 None:intergenic 30.0%
ATCCTGAAATTATATGTTGC+AGG + chr4.4:42338213-42338232 MS.gene055751:intron 30.0%
ATTGCTCACTCTTATTGTTA+AGG + chr4.4:42338604-42338623 MS.gene055751:CDS 30.0%
ATTTATCAAGATGTAGTAGG+CGG + chr4.4:42341495-42341514 MS.gene055751:intron 30.0%
ATTTCAGTAAATACGAGACA+TGG + chr4.4:42339878-42339897 MS.gene055751:intron 30.0%
CAAGCAAAATGATTTACTAG+GGG - chr4.4:42341151-42341170 None:intergenic 30.0%
GAATGAGTTAAGGATTGAAT+TGG - chr4.4:42337606-42337625 None:intergenic 30.0%
GCTTGCAAAAATATATGCAA+AGG + chr4.4:42339806-42339825 MS.gene055751:intron 30.0%
GGTCTGCTTTGTAAATAATA+AGG - chr4.4:42341735-42341754 None:intergenic 30.0%
GTATTCTTTCCTTGAAATGA+GGG - chr4.4:42339053-42339072 None:intergenic 30.0%
GTCTTGTAGTAAATGTAACT+AGG + chr4.4:42341254-42341273 MS.gene055751:intron 30.0%
GTTACTCAGATATTAAAGGA+TGG + chr4.4:42338536-42338555 MS.gene055751:intron 30.0%
TAAAGTACGTTCAAAACCAA+CGG - chr4.4:42338169-42338188 None:intergenic 30.0%
TCCTGAAATTATATGTTGCA+GGG + chr4.4:42338214-42338233 MS.gene055751:intron 30.0%
TCTAAGAAAAAACTCAACGA+CGG - chr4.4:42338138-42338157 None:intergenic 30.0%
TCTTGATAAATGATTGCAGT+AGG - chr4.4:42341486-42341505 None:intergenic 30.0%
TGAGAAAGAATAAGAAGAAC+AGG - chr4.4:42341651-42341670 None:intergenic 30.0%
TGTACCTTAAAATGATAGCA+TGG + chr4.4:42339002-42339021 MS.gene055751:intron 30.0%
TGTATTCTTTCCTTGAAATG+AGG - chr4.4:42339054-42339073 None:intergenic 30.0%
TGTTAACAGAAGGTTTCTTA+TGG + chr4.4:42339451-42339470 MS.gene055751:CDS 30.0%
TTTATCTAATGTGGCAAATG+AGG + chr4.4:42339328-42339347 MS.gene055751:CDS 30.0%
! ACAACCATGCTATCATTTTA+AGG - chr4.4:42339009-42339028 None:intergenic 30.0%
! ACTGAAATCTAAGACTAACT+GGG - chr4.4:42339866-42339885 None:intergenic 30.0%
! AGTTAGGACTTTAGCATTTT+GGG + chr4.4:42339980-42339999 MS.gene055751:intron 30.0%
! ATACCAAGCTTTATCTAATG+TGG + chr4.4:42339319-42339338 MS.gene055751:CDS 30.0%
! CAATCCTCCAATTTTATTAC+AGG - chr4.4:42338486-42338505 None:intergenic 30.0%
! GTAATGCTATTTGTTTCGAA+AGG + chr4.4:42338354-42338373 MS.gene055751:intron 30.0%
! TACTGAAATCTAAGACTAAC+TGG - chr4.4:42339867-42339886 None:intergenic 30.0%
! TAGTTAGGACTTTAGCATTT+TGG + chr4.4:42339979-42339998 MS.gene055751:intron 30.0%
! TCCATTTTCTCCAAAAAAAG+AGG - chr4.4:42340363-42340382 None:intergenic 30.0%
! TGCAGATTCTTTTAGTAGTT+AGG + chr4.4:42339964-42339983 MS.gene055751:intron 30.0%
! TTCTCAAAAAACAAAGGTAC+GGG - chr4.4:42340733-42340752 None:intergenic 30.0%
!! AATTGTTTCTACCATCAAAG+AGG + chr4.4:42340927-42340946 MS.gene055751:intron 30.0%
!! AGAAGTGTATTCTTTTGAGT+AGG - chr4.4:42341790-42341809 None:intergenic 30.0%
!! CATGATAACTCTAAAGCAAA+AGG - chr4.4:42338413-42338432 None:intergenic 30.0%
!! TAGTCATTTTACTGAAGATG+AGG + chr4.4:42340495-42340514 MS.gene055751:intron 30.0%
!! TCTTGAATGGCCTTAATTTT+AGG - chr4.4:42338899-42338918 None:intergenic 30.0%
!!! CGAAGTATTTTTTTCGCATT+TGG + chr4.4:42339575-42339594 MS.gene055751:intron 30.0%
!!! CTTCTACATTTTTTTGGTTG+TGG + chr4.4:42341378-42341397 MS.gene055751:intron 30.0%
!!! GTACGTTTATCCTCTTTTTT+TGG + chr4.4:42340350-42340369 MS.gene055751:intron 30.0%
!!! TCCTCTTTTTTTGGAGAAAA+TGG + chr4.4:42340359-42340378 MS.gene055751:intron 30.0%
AAAAAAAAAGAGGATGTGCG+TGG - chr4.4:42340433-42340452 None:intergenic 35.0%
AAAAAAAACCTGGTGCTTCA+TGG - chr4.4:42340279-42340298 None:intergenic 35.0%
AAAAAAACCTGGTGCTTCAT+GGG - chr4.4:42340278-42340297 None:intergenic 35.0%
AAAGGATAGCTTACCACAAA+TGG - chr4.4:42339546-42339565 None:intergenic 35.0%
AACTCTCATTTCCTCTTTGA+TGG - chr4.4:42340941-42340960 None:intergenic 35.0%
AAGTTTCTTCCACTCATGAT+CGG + chr4.4:42341817-42341836 MS.gene055751:CDS 35.0%
AATACTTCGCTTATGAGCAA+AGG - chr4.4:42339564-42339583 None:intergenic 35.0%
AATAGTGATATCGACACAGT+TGG + chr4.4:42340523-42340542 MS.gene055751:intron 35.0%
AATGCTCATTTAGTCCCTAT+TGG - chr4.4:42340039-42340058 None:intergenic 35.0%
AGGATTGAATTGGTGGAATT+TGG - chr4.4:42337596-42337615 None:intergenic 35.0%
AGTAATGTAGCAATTTGCGT+AGG + chr4.4:42339779-42339798 MS.gene055751:intron 35.0%
ATATAACTGTACCTGCCAAA+GGG - chr4.4:42339116-42339135 None:intergenic 35.0%
ATTGAATTGGTGGAATTTGG+TGG - chr4.4:42337593-42337612 None:intergenic 35.0%
ATTGTTTCAAGAACCATGAC+TGG - chr4.4:42339696-42339715 None:intergenic 35.0%
ATTTCATTGCCCTCATTTCA+AGG + chr4.4:42339041-42339060 MS.gene055751:intron 35.0%
CAGTAAATTGTTAGTCCTGA+TGG - chr4.4:42341862-42341881 None:intergenic 35.0%
CCACGTTCCTGTAATAAAAT+TGG + chr4.4:42338476-42338495 MS.gene055751:intron 35.0%
CGGCATTTCTCAAAAAACAA+AGG - chr4.4:42340739-42340758 None:intergenic 35.0%
CGTTCCTGTAATAAAATTGG+AGG + chr4.4:42338479-42338498 MS.gene055751:intron 35.0%
CTTTGGTATATAGTCTGGTA+CGG - chr4.4:42337557-42337576 None:intergenic 35.0%
GAATACAACTTGAGACTTCA+AGG + chr4.4:42339067-42339086 MS.gene055751:CDS 35.0%
GACATCAGACTATTTACTCT+TGG + chr4.4:42339646-42339665 MS.gene055751:intron 35.0%
GTGAACTTTGGTATATAGTC+TGG - chr4.4:42337562-42337581 None:intergenic 35.0%
GTGGCAAATGAGGTAATTAA+TGG + chr4.4:42339338-42339357 MS.gene055751:intron 35.0%
TAAACATTTGAGCAAGTGCT+TGG - chr4.4:42341091-42341110 None:intergenic 35.0%
TAAGACTAACTGGGACAATA+GGG - chr4.4:42339857-42339876 None:intergenic 35.0%
TACCTTAAGAACAAACTCCA+TGG - chr4.4:42337781-42337800 None:intergenic 35.0%
TAGGGACTAAATGAGCATTT+AGG + chr4.4:42340040-42340059 MS.gene055751:intron 35.0%
TATATAGTCTGGTACGGTTA+GGG - chr4.4:42337551-42337570 None:intergenic 35.0%
TCCCTGCAACATATAATTTC+AGG - chr4.4:42338218-42338237 None:intergenic 35.0%
TGAGTTAAGGATTGAATTGG+TGG - chr4.4:42337603-42337622 None:intergenic 35.0%
TGGAAAAAGCCAAGAAATTC+CGG - chr4.4:42339526-42339545 None:intergenic 35.0%
TGTAAAAAAAAAGGGCAGCT+CGG - chr4.4:42340907-42340926 None:intergenic 35.0%
TTCTTAGAAGATTGAACCGT+TGG + chr4.4:42338150-42338169 MS.gene055751:intron 35.0%
TTGCCACATTAGATAAAGCT+TGG - chr4.4:42339325-42339344 None:intergenic 35.0%
! CATTTTACTGAAGATGAGGA+AGG + chr4.4:42340499-42340518 MS.gene055751:intron 35.0%
! CCAATTTTATTACAGGAACG+TGG - chr4.4:42338479-42338498 None:intergenic 35.0%
! CTCTTGGCAATCATTTTCTT+TGG + chr4.4:42339662-42339681 MS.gene055751:intron 35.0%
! GTTAGGACTTTAGCATTTTG+GGG + chr4.4:42339981-42340000 MS.gene055751:intron 35.0%
! TTAGGACTTTAGCATTTTGG+GGG + chr4.4:42339982-42340001 MS.gene055751:intron 35.0%
! TTTATTGGTTGTGTTGTGGT+AGG + chr4.4:42341227-42341246 MS.gene055751:intron 35.0%
!! AACTCTAAAGCAAAAGGGTA+AGG - chr4.4:42338407-42338426 None:intergenic 35.0%
!! ACTCTAAAGCAAAAGGGTAA+GGG - chr4.4:42338406-42338425 None:intergenic 35.0%
!! CTTTATAGTTTTACGGAGCT+CGG + chr4.4:42341202-42341221 MS.gene055751:intron 35.0%
!! TATAGGTTGTTTACCGACTT+TGG + chr4.4:42339271-42339290 MS.gene055751:intron 35.0%
!! TTCTTGGCTTTTTCCATTTG+TGG + chr4.4:42339530-42339549 MS.gene055751:CDS 35.0%
!!! GGAGGATTGCATTTTTTAAC+AGG + chr4.4:42338497-42338516 MS.gene055751:intron 35.0%
!!! TGGCCTTAATTTTAGGTTGA+AGG - chr4.4:42338892-42338911 None:intergenic 35.0%
AAAGTGGATCCGGAATTTCT+TGG + chr4.4:42339514-42339533 MS.gene055751:CDS 40.0%
AACTGGGCTGTACTTAAAGA+AGG + chr4.4:42339232-42339251 MS.gene055751:intron 40.0%
AAGAACAAACTCCATGGCAT+CGG - chr4.4:42337775-42337794 None:intergenic 40.0%
ACGTCTGTTAATTGTTGTGC+AGG + chr4.4:42341575-42341594 MS.gene055751:intron 40.0%
ACTTCCTTTGACAAAGCAAC+AGG + chr4.4:42338634-42338653 MS.gene055751:CDS 40.0%
AGACATGGTTTATGCAGCAT+GGG + chr4.4:42339893-42339912 MS.gene055751:intron 40.0%
AGCCTCTTGTGTAAAACACA+GGG + chr4.4:42340810-42340829 MS.gene055751:intron 40.0%
ATAAAGAAGTCCTTCAGCTC+TGG - chr4.4:42337652-42337671 None:intergenic 40.0%
ATACGAATAAGGCACATGCA+CGG - chr4.4:42338570-42338589 None:intergenic 40.0%
ATATAGTCTGGTACGGTTAG+GGG - chr4.4:42337550-42337569 None:intergenic 40.0%
ATTTCATCTCCATCGTTCCT+CGG + chr4.4:42337489-42337508 MS.gene055751:CDS 40.0%
CTAAGACTAACTGGGACAAT+AGG - chr4.4:42339858-42339877 None:intergenic 40.0%
CTGTTAATTGTTGTGCAGGA+TGG + chr4.4:42341579-42341598 MS.gene055751:intron 40.0%
GATATAACTGTACCTGCCAA+AGG - chr4.4:42339117-42339136 None:intergenic 40.0%
GCCATTCAAGAAAGATATGC+CGG + chr4.4:42338908-42338927 MS.gene055751:CDS 40.0%
GTAACTAGGAAGTAGGAACT+GGG + chr4.4:42341268-42341287 MS.gene055751:intron 40.0%
GTATATAGTCTGGTACGGTT+AGG - chr4.4:42337552-42337571 None:intergenic 40.0%
GTGGAAACTGAAGTGAACTT+TGG - chr4.4:42337574-42337593 None:intergenic 40.0%
TACGGGTACGTTTAGCAAAA+CGG - chr4.4:42340205-42340224 None:intergenic 40.0%
TCCACCAGTTTCAATGTACT+TGG + chr4.4:42338380-42338399 MS.gene055751:intron 40.0%
TGTAACTAGGAAGTAGGAAC+TGG + chr4.4:42341267-42341286 MS.gene055751:intron 40.0%
TTCTTATGGATCCCTTCTCT+CGG + chr4.4:42339465-42339484 MS.gene055751:CDS 40.0%
TTGAAGGGACTGTTAACAGA+AGG + chr4.4:42339441-42339460 MS.gene055751:intron 40.0%
TTGGTATAGACCAATCCAGA+CGG - chr4.4:42339306-42339325 None:intergenic 40.0%
! CTTTGTCAAAGGAAGTGTAG+CGG - chr4.4:42338630-42338649 None:intergenic 40.0%
! GGTGTTTATTGGTTGTGTTG+TGG + chr4.4:42341223-42341242 MS.gene055751:intron 40.0%
! TGCCATGGAGTTTGTTCTTA+AGG + chr4.4:42337776-42337795 MS.gene055751:CDS 40.0%
! TTTGGAGCTTATTCCAGTCA+TGG + chr4.4:42339680-42339699 MS.gene055751:intron 40.0%
! TTTTAATGGTTGGGTACGGA+CGG + chr4.4:42340304-42340323 MS.gene055751:intron 40.0%
!! CTAACCTGTTGCTTTGTCAA+AGG - chr4.4:42338641-42338660 None:intergenic 40.0%
!! TTGGACTGGCAATCCATTTA+TGG - chr4.4:42338745-42338764 None:intergenic 40.0%
AAGGCTATATACCCAAGCTG+GGG + chr4.4:42339086-42339105 MS.gene055751:CDS 45.0%
AAGTTGTTGCGGTGAAGTGA+AGG - chr4.4:42337525-42337544 None:intergenic 45.0%
ACAACTTTACCATTGCGCCA+AGG - chr4.4:42340146-42340165 None:intergenic 45.0%
ACATATGCAGGTCCAGGAAT+GGG - chr4.4:42340869-42340888 None:intergenic 45.0%
ACGGGAATAGTAGCCAAAGT+CGG - chr4.4:42339287-42339306 None:intergenic 45.0%
ACTAAAGCTCCCACATATGC+AGG - chr4.4:42340881-42340900 None:intergenic 45.0%
AGAAAGATATGCCGGCAATC+AGG + chr4.4:42338916-42338935 MS.gene055751:CDS 45.0%
AGATCTTGAACCTGTGACCA+CGG - chr4.4:42340784-42340803 None:intergenic 45.0%
AGCATTGCTGCTAGACAAAG+TGG + chr4.4:42339498-42339517 MS.gene055751:CDS 45.0%
AGGGCCAAGTACATTGAAAC+TGG - chr4.4:42338387-42338406 None:intergenic 45.0%
ATACCTGACATGCTTACCTG+AGG - chr4.4:42341702-42341721 None:intergenic 45.0%
ATTCCTGGACCTGCATATGT+GGG + chr4.4:42340869-42340888 MS.gene055751:intron 45.0%
CAAGGCTATATACCCAAGCT+GGG + chr4.4:42339085-42339104 MS.gene055751:CDS 45.0%
CACCACAGAATGTGCCAATA+GGG + chr4.4:42340022-42340041 MS.gene055751:intron 45.0%
CAGCCTCTTGTGTAAAACAC+AGG + chr4.4:42340809-42340828 MS.gene055751:intron 45.0%
CAGGAACGTGGAACATTTGT+AGG - chr4.4:42338467-42338486 None:intergenic 45.0%
GAGACATGGTTTATGCAGCA+TGG + chr4.4:42339892-42339911 MS.gene055751:intron 45.0%
GATGTTGCTGTGCAGAAGAA+CGG + chr4.4:42337729-42337748 MS.gene055751:CDS 45.0%
GCCAAGTACATTGAAACTGG+TGG - chr4.4:42338384-42338403 None:intergenic 45.0%
GCCGGCATATCTTTCTTGAA+TGG - chr4.4:42338912-42338931 None:intergenic 45.0%
GCCTCTTGTGTAAAACACAG+GGG + chr4.4:42340811-42340830 MS.gene055751:intron 45.0%
GGAAATCATGAAACCACCTC+AGG + chr4.4:42341683-42341702 MS.gene055751:CDS 45.0%
GTAGGGTACACCAAAATGGT+GGG + chr4.4:42340842-42340861 MS.gene055751:intron 45.0%
GTCACAGACTCACAAGTACT+AGG - chr4.4:42339613-42339632 None:intergenic 45.0%
GTTGTTGTCACGTGACTGAA+AGG + chr4.4:42340161-42340180 MS.gene055751:intron 45.0%
TCAAGGCTATATACCCAAGC+TGG + chr4.4:42339084-42339103 MS.gene055751:CDS 45.0%
TCACCACAGAATGTGCCAAT+AGG + chr4.4:42340021-42340040 MS.gene055751:intron 45.0%
TGGTATAGACCAATCCAGAC+GGG - chr4.4:42339305-42339324 None:intergenic 45.0%
TGTCTAGCAGCAATGCTAGT+GGG - chr4.4:42339495-42339514 None:intergenic 45.0%
TTCTCACTATCTGTGCCATC+AGG + chr4.4:42341844-42341863 MS.gene055751:CDS 45.0%
TTGTCTAGCAGCAATGCTAG+TGG - chr4.4:42339496-42339515 None:intergenic 45.0%
TTTAATGGTTGGGTACGGAC+GGG + chr4.4:42340305-42340324 MS.gene055751:intron 45.0%
TTTGCTAAACGTACCCGTAC+CGG + chr4.4:42340206-42340225 MS.gene055751:intron 45.0%
! GTGCATGTGCCTTATTCGTA+TGG + chr4.4:42338569-42338588 MS.gene055751:CDS 45.0%
! TCCCCTGTGTTTTACACAAG+AGG - chr4.4:42340815-42340834 None:intergenic 45.0%
!! ACTGAAAGGCTCTGAAGCAT+GGG + chr4.4:42340175-42340194 MS.gene055751:intron 45.0%
!! ACTTTAGCATTTTGGGGGTG+GGG + chr4.4:42339987-42340006 MS.gene055751:intron 45.0%
!! GACTTTAGCATTTTGGGGGT+GGG + chr4.4:42339986-42340005 MS.gene055751:intron 45.0%
!! GTACTGCAGTGGTACTGATT+GGG + chr4.4:42340328-42340347 MS.gene055751:intron 45.0%
!! TTACGGAGCTCGGTGTTTAT+TGG + chr4.4:42341212-42341231 MS.gene055751:intron 45.0%
!!! TGGTTTTATCTCCGATGCCA+TGG + chr4.4:42337761-42337780 MS.gene055751:CDS 45.0%
!!! GTTTTTTTTTTTTTTTTTAA+TGG + chr4.4:42340290-42340309 MS.gene055751:intron 5.0%
!!! TTTTTTTTTTTTTTGTTATA+TGG + chr4.4:42338306-42338325 MS.gene055751:intron 5.0%
AACATCCGTGGAAGTGGAAG+TGG - chr4.4:42337715-42337734 None:intergenic 50.0%
ATATGCCGGCAATCAGGTGA+GGG + chr4.4:42338922-42338941 MS.gene055751:intron 50.0%
CAAAGGGTTAACCCCAGCTT+GGG - chr4.4:42339100-42339119 None:intergenic 50.0%
CACATATGCAGGTCCAGGAA+TGG - chr4.4:42340870-42340889 None:intergenic 50.0%
CACTTCCACTTCCACTTCCA+CGG + chr4.4:42337707-42337726 MS.gene055751:CDS 50.0%
CATTCCTGGACCTGCATATG+TGG + chr4.4:42340868-42340887 MS.gene055751:intron 50.0%
CGTAGGGTACACCAAAATGG+TGG + chr4.4:42340841-42340860 MS.gene055751:intron 50.0%
CTGCGTAGGGTACACCAAAA+TGG + chr4.4:42340838-42340857 MS.gene055751:intron 50.0%
CTTTGGCTACTATTCCCGTC+TGG + chr4.4:42339288-42339307 MS.gene055751:CDS 50.0%
GAGAAGTAGCCGATCATGAG+TGG - chr4.4:42341829-42341848 None:intergenic 50.0%
GATCTTGAACCTGTGACCAC+GGG - chr4.4:42340783-42340802 None:intergenic 50.0%
GCTACTATTCCCGTCTGGAT+TGG + chr4.4:42339293-42339312 MS.gene055751:CDS 50.0%
GCTGCTAGACAAAGTGGATC+CGG + chr4.4:42339504-42339523 MS.gene055751:CDS 50.0%
GGAAGTGGAAGTGACTGCAT+CGG - chr4.4:42337700-42337719 None:intergenic 50.0%
GGTTAGGGGAGAAGTTGTTG+CGG - chr4.4:42337536-42337555 None:intergenic 50.0%
GTCCCTATTGGCACATTCTG+TGG - chr4.4:42340027-42340046 None:intergenic 50.0%
TATGCAGCATGGGTGCAAGT+TGG + chr4.4:42339903-42339922 MS.gene055751:intron 50.0%
TTAATGGTTGGGTACGGACG+GGG + chr4.4:42340306-42340325 MS.gene055751:intron 50.0%
TTATGGATCCCTTCTCTCGG+TGG + chr4.4:42339468-42339487 MS.gene055751:CDS 50.0%
TTGCGGTGAAGTGAAGGAAG+TGG - chr4.4:42337519-42337538 None:intergenic 50.0%
TTGCTAAACGTACCCGTACC+GGG + chr4.4:42340207-42340226 MS.gene055751:intron 50.0%
TTTCTACCAAGGGAGAGCCT+TGG + chr4.4:42340126-42340145 MS.gene055751:intron 50.0%
! AAAATGGTGGGACCCATTCC+TGG + chr4.4:42340854-42340873 MS.gene055751:intron 50.0%
! AGGAATGGGTCCCACCATTT+TGG - chr4.4:42340855-42340874 None:intergenic 50.0%
! CAGAAGAACGGAGGTTGGTT+TGG + chr4.4:42337741-42337760 MS.gene055751:CDS 50.0%
!! CTTTAGCATTTTGGGGGTGG+GGG + chr4.4:42339988-42340007 MS.gene055751:intron 50.0%
!! GACTGAAAGGCTCTGAAGCA+TGG + chr4.4:42340174-42340193 MS.gene055751:intron 50.0%
!! GGACTTTAGCATTTTGGGGG+TGG + chr4.4:42339985-42340004 MS.gene055751:intron 50.0%
!! GGTACTGCAGTGGTACTGAT+TGG + chr4.4:42340327-42340346 MS.gene055751:intron 50.0%
AACACAGGGGAAGACTGCGT+AGG + chr4.4:42340824-42340843 MS.gene055751:intron 55.0%
AACACCCCTCACCTGATTGC+CGG - chr4.4:42338930-42338949 None:intergenic 55.0%
ACACAGGGGAAGACTGCGTA+GGG + chr4.4:42340825-42340844 MS.gene055751:intron 55.0%
AGTGGAGTTCCGAGGAACGA+TGG - chr4.4:42337501-42337520 None:intergenic 55.0%
ATGGCCATCCACCTTTGGGT+TGG + chr4.4:42341598-42341617 MS.gene055751:CDS 55.0%
CACAGCAACATCCGTGGAAG+TGG - chr4.4:42337721-42337740 None:intergenic 55.0%
CAGGATGGCCATCCACCTTT+GGG + chr4.4:42341594-42341613 MS.gene055751:intron 55.0%
CATGCCAACCCAAAGGTGGA+TGG - chr4.4:42341605-42341624 None:intergenic 55.0%
CCAAAGGGTTAACCCCAGCT+TGG - chr4.4:42339101-42339120 None:intergenic 55.0%
CCAAGCTGGGGTTAACCCTT+TGG + chr4.4:42339098-42339117 MS.gene055751:CDS 55.0%
CCACCTCAGGTAAGCATGTC+AGG + chr4.4:42341696-42341715 MS.gene055751:intron 55.0%
CCTGACATGCTTACCTGAGG+TGG - chr4.4:42341699-42341718 None:intergenic 55.0%
CTGTGCAGAAGAACGGAGGT+TGG + chr4.4:42337736-42337755 MS.gene055751:CDS 55.0%
CTTCTGCACAGCAACATCCG+TGG - chr4.4:42337727-42337746 None:intergenic 55.0%
GATATGCCGGCAATCAGGTG+AGG + chr4.4:42338921-42338940 MS.gene055751:intron 55.0%
GCAGTGTCATGCCAACCCAA+AGG - chr4.4:42341612-42341631 None:intergenic 55.0%
GTGAAGGAAGTGGAGTTCCG+AGG - chr4.4:42337509-42337528 None:intergenic 55.0%
GTGTCATGCCAACCCAAAGG+TGG - chr4.4:42341609-42341628 None:intergenic 55.0%
GTTGCTGTGCAGAAGAACGG+AGG + chr4.4:42337732-42337751 MS.gene055751:CDS 55.0%
TAGTGGGACCACCGAGAGAA+GGG - chr4.4:42339479-42339498 None:intergenic 55.0%
TATGCCGGCAATCAGGTGAG+GGG + chr4.4:42338923-42338942 MS.gene055751:intron 55.0%
! AGTGACTGCATCGGCCGTAA+CGG - chr4.4:42337691-42337710 None:intergenic 55.0%
! TTCAGCTCTGGCGAAGACAC+CGG - chr4.4:42337640-42337659 None:intergenic 55.0%
AAGGGAGAGCCTTGGCGCAA+TGG + chr4.4:42340134-42340153 MS.gene055751:intron 60.0%
ATTGCGCCAAGGCTCTCCCT+TGG - chr4.4:42340135-42340154 None:intergenic 60.0%
CTAGTGGGACCACCGAGAGA+AGG - chr4.4:42339480-42339499 None:intergenic 60.0%
GCAGGATGGCCATCCACCTT+TGG + chr4.4:42341593-42341612 MS.gene055751:intron 60.0%
GCTCCCACATATGCAGGTCC+AGG - chr4.4:42340875-42340894 None:intergenic 60.0%
GCTGGGGTTAACCCTTTGGC+AGG + chr4.4:42339102-42339121 MS.gene055751:CDS 60.0%
GGTGTCTTCGCCAGAGCTGA+AGG + chr4.4:42337639-42337658 MS.gene055751:CDS 60.0%
TGAACCTGTGACCACGGGTG+CGG - chr4.4:42340778-42340797 None:intergenic 60.0%
! GTACGCACCCATGAAGCACC+AGG + chr4.4:42340268-42340287 MS.gene055751:intron 60.0%
!! CGCGGGTACTGGTACACGTA+CGG + chr4.4:42340235-42340254 MS.gene055751:intron 60.0%
!! GCATTTTGGGGGTGGGGGTA+TGG + chr4.4:42339993-42340012 MS.gene055751:intron 60.0%
ACCAGTACCCGCGCAGTACC+CGG - chr4.4:42340228-42340247 None:intergenic 65.0%
ATCGGCCGTAACGGCGGCAT+CGG - chr4.4:42337682-42337701 None:intergenic 65.0%
GAACCTGTGACCACGGGTGC+GGG - chr4.4:42340777-42340796 None:intergenic 65.0%
GCGGGTACGGGTACGGGATA+CGG - chr4.4:42340759-42340778 None:intergenic 65.0%
TACCCGCGCAGTACCCGGTA+CGG - chr4.4:42340223-42340242 None:intergenic 65.0%
TGTGACCACGGGTGCGGGTA+CGG - chr4.4:42340772-42340791 None:intergenic 65.0%
! GACTGCATCGGCCGTAACGG+CGG - chr4.4:42337688-42337707 None:intergenic 65.0%
! TACCCGTACCGGGTACTGCG+CGG + chr4.4:42340217-42340236 MS.gene055751:intron 65.0%
!! GTACGGACGGGGTACTGCAG+TGG + chr4.4:42340317-42340336 MS.gene055751:intron 65.0%
ACCCGCGCAGTACCCGGTAC+GGG - chr4.4:42340222-42340241 None:intergenic 70.0%
ACGGGTGCGGGTACGGGTAC+GGG - chr4.4:42340765-42340784 None:intergenic 70.0%
CACGGGTGCGGGTACGGGTA+CGG - chr4.4:42340766-42340785 None:intergenic 70.0%
GCTCGCCGATGCCGCCGTTA+CGG + chr4.4:42337674-42337693 MS.gene055751:CDS 70.0%
GTACCCGCACCCGTGGTCAC+AGG + chr4.4:42340771-42340790 MS.gene055751:intron 70.0%
GTGACCACGGGTGCGGGTAC+GGG - chr4.4:42340771-42340790 None:intergenic 70.0%
! ACCCGTACCGGGTACTGCGC+GGG + chr4.4:42340218-42340237 MS.gene055751:intron 70.0%
! ACCGGGTACTGCGCGGGTAC+TGG + chr4.4:42340224-42340243 MS.gene055751:intron 70.0%
CGTACCCGTACCCGCACCCG+TGG + chr4.4:42340764-42340783 MS.gene055751:intron 75.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 42337474 42341881 42337474 ID=MS.gene055751
chr4.4 mRNA 42337474 42341881 42337474 ID=MS.gene055751.t1;Parent=MS.gene055751
chr4.4 exon 42337474 42337797 42337474 ID=MS.gene055751.t1.exon1;Parent=MS.gene055751.t1
chr4.4 CDS 42337474 42337797 42337474 ID=cds.MS.gene055751.t1;Parent=MS.gene055751.t1
chr4.4 exon 42338545 42338655 42338545 ID=MS.gene055751.t1.exon2;Parent=MS.gene055751.t1
chr4.4 CDS 42338545 42338655 42338545 ID=cds.MS.gene055751.t1;Parent=MS.gene055751.t1
chr4.4 exon 42338863 42338937 42338863 ID=MS.gene055751.t1.exon3;Parent=MS.gene055751.t1
chr4.4 CDS 42338863 42338937 42338863 ID=cds.MS.gene055751.t1;Parent=MS.gene055751.t1
chr4.4 exon 42339063 42339123 42339063 ID=MS.gene055751.t1.exon4;Parent=MS.gene055751.t1
chr4.4 CDS 42339063 42339123 42339063 ID=cds.MS.gene055751.t1;Parent=MS.gene055751.t1
chr4.4 exon 42339276 42339349 42339276 ID=MS.gene055751.t1.exon5;Parent=MS.gene055751.t1
chr4.4 CDS 42339276 42339349 42339276 ID=cds.MS.gene055751.t1;Parent=MS.gene055751.t1
chr4.4 exon 42339447 42339551 42339447 ID=MS.gene055751.t1.exon6;Parent=MS.gene055751.t1
chr4.4 CDS 42339447 42339551 42339447 ID=cds.MS.gene055751.t1;Parent=MS.gene055751.t1
chr4.4 exon 42341597 42341704 42341597 ID=MS.gene055751.t1.exon7;Parent=MS.gene055751.t1
chr4.4 CDS 42341597 42341704 42341597 ID=cds.MS.gene055751.t1;Parent=MS.gene055751.t1
chr4.4 exon 42341778 42341881 42341778 ID=MS.gene055751.t1.exon8;Parent=MS.gene055751.t1
chr4.4 CDS 42341778 42341881 42341778 ID=cds.MS.gene055751.t1;Parent=MS.gene055751.t1
Gene Sequence

>MS.gene055751

ATGGCGAAGACACTGATTTCATCTCCATCGTTCCTCGGAACTCCACTTCCTTCACTTCACCGCAACAACTTCTCCCCTAACCGTACCAGACTATATACCAAAGTTCACTTCAGTTTCCACCAAATTCCACCAATTCAATCCTTAACTCATTCTATTGATGTTACCGGTGTCTTCGCCAGAGCTGAAGGACTTCTTTATACGCTCGCCGATGCCGCCGTTACGGCCGATGCAGTCACTTCCACTTCCACTTCCACGGATGTTGCTGTGCAGAAGAACGGAGGTTGGTTTGGTTTTATCTCCGATGCCATGGAGTTTGTTCTTAAGGTAATCTTCACAACTTGTGCTTTTTAATTTTATCAACTATCTTTCTTAATATTCGTAATTTAACTAATTTTTGCTTATAATTCATTCCAAAGAAAGTATATGAAATAAAATCAAACCGAACTTATGAAAATAAACTGAAAACAGTTTGGGAGATGTCATAATTTGTTTTTATGTGATCTTTGGAACAGTCTCATAAGTGATTATGTTAATAAATAAGCTAAAATAAGTCAATCCAAACATGACCTTACTATATAAGGATTTTGTTGCCTTGAGATTCATGAAATTTGTATTATTGAGGTTGTTTAGACTTTAGATTGCTTATATCTTAAGATACTCTCCGTCGTTGAGTTTTTTCTTAGAAGATTGAACCGTTGGTTTTGAACGTACTTTAAATGAGAACGATGTTAAGGTTCTTATCCTGAAATTATATGTTGCAGGGAAAGTGTTCAGTGTTACTGACTTACTGTTTACTTCTGTTAATTTAATTAAACAAGTTAAACTTGTGTTTTTTTTTTTTTTTTTGTTATATGGAAATGTATACATATAAATGGAAAGAGTAATGCTATTTGTTTCGAAAGGTTTTCCACCAGTTTCAATGTACTTGGCCCTTACCCTTTTGCTTTAGAGTTATCATGTAAAATAGCCATAAAAAGGAAAACAAAACTACCTACAAATGTTCCACGTTCCTGTAATAAAATTGGAGGATTGCATTTTTTAACAGGAAATGTTTTGCTTGTTGTTACTCAGATATTAAAGGATGGTTTGTCTGCCGTGCATGTGCCTTATTCGTATGGATTTGCTATCATATTGCTCACTCTTATTGTTAAGGCCGCTACACTTCCTTTGACAAAGCAACAGGTTAGTACAAATTACAGCAATTTCTATAGGCAAATTTACTGAAACCATGAAATTATGATAACCTCGTTTGAAACATTAAAAACAAACCATAAATGGATTGCCAGTCCAAAAAAAAAAACCATAAATGGATTTTTCTTTCAGTTATATGAAATTTAACACATACTATATATCACTAAATGAAGTTCTGACTTTATTTAATACATGTAGGTTGAATCAACACTAGCTATGCAAAACCTTCAACCTAAAATTAAGGCCATTCAAGAAAGATATGCCGGCAATCAGGTGAGGGGTGTTGCTGTTTGTTACTTGTTAAGCTTCCAATTTATTCTTAAGTAAATATTGATTTTGTACCTTAAAATGATAGCATGGTTGTTTCTAACTACTTATTTCATTGCCCTCATTTCAAGGAAAGAATACAACTTGAGACTTCAAGGCTATATACCCAAGCTGGGGTTAACCCTTTGGCAGGTACAGTTATATCTTACTATTGCCTTTATCATTTTCATCTCAACTCTGATTCTGTATAATAATGCTTTGACATGTGATAATATGATGTCAAAACATTTGCAATATCATAACTGGGCTGTACTTAAAGAAGGCAATTTTATCATTTTGTATAGGTTGTTTACCGACTTTGGCTACTATTCCCGTCTGGATTGGTCTATACCAAGCTTTATCTAATGTGGCAAATGAGGTAATTAATGGTATATAAACTATTATAATTTGAGATTTTGATAGACGAATTACAAATACATGATTTTTGCTAATTATTGAAAACTTTTAATTTGAAGGGACTGTTAACAGAAGGTTTCTTATGGATCCCTTCTCTCGGTGGTCCCACTAGCATTGCTGCTAGACAAAGTGGATCCGGAATTTCTTGGCTTTTTCCATTTGTGGTAAGCTATCCTTTGCTCATAAGCGAAGTATTTTTTTCGCATTTGGCTATTTCTTTTTCCTAGTACTTGTGAGTCTGTGACACTATGATTTTCAGACATCAGACTATTTACTCTTGGCAATCATTTTCTTTGGAGCTTATTCCAGTCATGGTTCTTGAAACAATTTTTTTTTTTTTTAAATTGTATGTCATACAGTACAGTTGCTGATAAAAATTCTTTTCATAGTTAGTAATGTAGCAATTTGCGTAGGCTCTGCTTGCAAAAATATATGCAAAGGTTCCTTTTTATAAGTTATGCATATGCCCTATTGTCCCAGTTAGTCTTAGATTTCAGTAAATACGAGACATGGTTTATGCAGCATGGGTGCAAGTTGGATTAAATAGTAGTATATAACATGCAGCACATTTAGTGATGCAGATTCTTTTAGTAGTTAGGACTTTAGCATTTTGGGGGTGGGGGTATGGTCTGTTCACCACAGAATGTGCCAATAGGGACTAAATGAGCATTTAGGTCAACTGCTTAATTAAACATTAATTCACAAGCACTTGTCGTATTAAAGCTTATATACAAATTGTTTCTACCAAGGGAGAGCCTTGGCGCAATGGTAAAGTTGTTGTCACGTGACTGAAAGGCTCTGAAGCATGGGTACTCCGTTTTGCTAAACGTACCCGTACCGGGTACTGCGCGGGTACTGGTACACGTACGGTACGCGTACTGTACGCACCCATGAAGCACCAGGTTTTTTTTTTTTTTTTTAATGGTTGGGTACGGACGGGGTACTGCAGTGGTACTGATTGGGTACGTTTATCCTCTTTTTTTGGAGAAAATGGAGCAATTATAGTTTTTTTTTGTTTTTTTTATAAAAGTCAAACTTAACTCCACGCACATCCTCTTTTTTTTTGAGAAAAACAAGCCCTTTTATGAGAATTAATAGCATTGAAGCTAGTCATTTTACTGAAGATGAGGAAGGAAATAGTGATATCGACACAGTTGGAGTGTGATTTTTCCTATTCATGCATAGTTATTAAGTTTTATCCCGTACTTTAGTTTTTCAATTTGGATGTTTTAGCGTTGTAATTTTTTTTTTGGTTGAATTTTTGTCGTCATTTGAGCAATATAATTTTCTCATGCAATGTTATTTATTTTAAATTTAAAAAAAAAAAATTTATCGTAACGTACCCGTACCTTTGTTTTTTGAGAAATGCCGTATCCCGTACCCGTACCCGCACCCGTGGTCACAGGTTCAAGATCTAGAAACAGCCTCTTGTGTAAAACACAGGGGAAGACTGCGTAGGGTACACCAAAATGGTGGGACCCATTCCTGGACCTGCATATGTGGGAGCTTTAGTGCACCGAGCTGCCCTTTTTTTTTACAAATTGTTTCTACCATCAAAGAGGAAATGAGAGTTAATTGCACTACAGTTCTTTTGAGTTGTTTCATTACAAAATGAAGTTCTCTTATAGCCTATCCATAAAAGCTTATGAAAATAAGTTGAATACAAATGAACATATCATTAAGTATTTAAGTAAGTTTTTCCAAGCACTTGCTCAAATGTTTATATCATAAGATAAGCCTAAATACACTCTTATAAACACCCCCTAGTAAATCATTTTGCTTGTTACAATGGTCATTACCACATCAATTAGTTTCTTTATAGTTTTACGGAGCTCGGTGTTTATTGGTTGTGTTGTGGTAGGTTGAGTCTTGTAGTAAATGTAACTAGGAAGTAGGAACTGGGAAAACAACATTATGTTTTGATGACTTTAGTATTTCTTCTCTTTGGTTGACCCTCTTTTCTCACTTTCTTTTTACAGGGAAAAGTTTTCTTCTACATTTTTTTGGTTGTGGTTTATGAGATTTCATTTTTTATTTATTTATTTATTTATATCAGTATGGATATTAGCATTTAATGTTCTAGATGAAATGCTCACCTACTGCAATCATTTATCAAGATGTAGTAGGCGGTACACTTTGTTAGTTGATTCTATGTTTTTTCTTCCGCTATACAATATAACATAACAAACGTCTGTTAATTGTTGTGCAGGATGGCCATCCACCTTTGGGTTGGCATGACACTGCAGCATATCTTGTTTTACCTGTTCTTCTTATTCTTTCTCAATATGTTTCAATGGAAATCATGAAACCACCTCAGGTAAGCATGTCAGGTATCCTTCTCTTTCCTTATTATTTACAAAGCAGACCTAACTTACTTTTTTTTTTTACAGACAAATGATCCTACTCAAAAGAATACACTTCTTATTTTCAAGTTTCTTCCACTCATGATCGGCTACTTCTCACTATCTGTGCCATCAGGACTAACAATTTACTG

Protein sequence

>MS.gene055751.t1

MAKTLISSPSFLGTPLPSLHRNNFSPNRTRLYTKVHFSFHQIPPIQSLTHSIDVTGVFARAEGLLYTLADAAVTADAVTSTSTSTDVAVQKNGGWFGFISDAMEFVLKILKDGLSAVHVPYSYGFAIILLTLIVKAATLPLTKQQVESTLAMQNLQPKIKAIQERYAGNQERIQLETSRLYTQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFLWIPSLGGPTSIAARQSGSGISWLFPFVDGHPPLGWHDTAAYLVLPVLLILSQYVSMEIMKPPQTNDPTQKNTLLIFKFLPLMIGYFSLSVPSGLTIY