AlfalfaGEDB | MS.gene49515

M. sativa cultivar XinJiangDaYe / MS.gene49515

KEGG: K02552
GO: GO:0008150 GO:0008152 GO:0009058
PFAM: PF00425.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49515.t1	XP_004514127.2	63.2	285	70	3	219	468	140	424	4.90E-86	328.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49515.t1	Q9M9V6	51.5	235	82	2	224	426	184	418	8.6e-55	216.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49515.t1	A0A1S3EIF9	63.2	285	70	3	219	468	140	424	3.6e-86	328.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051699	MS.gene49515	0.807074	6.04E-50	-1.69E-46
MS.gene057576	MS.gene49515	0.892183	2.01E-74	-1.69E-46
MS.gene057577	MS.gene49515	0.882398	1.08E-70	-1.69E-46
MS.gene057580	MS.gene49515	0.822838	1.91E-53	-1.69E-46
MS.gene057584	MS.gene49515	0.891246	4.73E-74	-1.69E-46
MS.gene057586	MS.gene49515	0.882198	1.27E-70	-1.69E-46
MS.gene057588	MS.gene49515	0.91353	5.53E-84	-1.69E-46
MS.gene057590	MS.gene49515	0.839837	1.25E-57	-1.69E-46
MS.gene057591	MS.gene49515	0.882624	8.91E-71	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49515.t1	MTR_4g076520	70.539	241	39	2	219	427	181	421	9.38e-111	339
MS.gene49515.t1	MTR_7g011390	73.109	238	25	4	1	220	1	217	1.40e-72	229
MS.gene49515.t1	MTR_7g011400	93.671	79	5	0	349	427	25	103	2.80e-44	156

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49515.t1	AT1G18870	50.840	238	85	2	221	426	131	368	1.88e-69	230
MS.gene49515.t1	AT1G18870	50.840	238	85	2	221	426	181	418	5.91e-69	230
MS.gene49515.t1	AT1G74710	49.372	239	89	2	221	427	186	424	1.69e-66	224
MS.gene49515.t1	AT1G74710	49.372	239	89	2	221	427	186	424	9.59e-66	223
MS.gene49515.t1	AT1G18870	49.083	218	79	2	221	406	181	398	1.03e-58	202

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Find 88 sgRNAs with CRISPR-Local

Find 273 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCAGGTTGTTCTAGCA+TGG	0.545109	7.4:-88013398	MS.gene49515:intron
AAAGCTGCTGTTCAGGAGGG+GGG	0.608878	7.4:-88015494	MS.gene49515:intron
AAATGATTCTTCGCTCTCCA+AGG	0.579051	7.4:-88013540	MS.gene49515:intron
AAGCATCACTAGTGATATGT+AGG	0.527000	7.4:+88013021	None:intergenic
AAGCCAAGGTTTCATCAGAG+TGG	0.684826	7.4:-88014430	MS.gene49515:CDS
ACAAGGTAAACCTGGTAAGC+AGG	0.510358	7.4:+88012940	None:intergenic
ACATATCACTAGTGATGCTT+TGG	0.454991	7.4:-88013018	MS.gene49515:CDS
ACCACCTTGCCATATTGTGT+TGG	0.505366	7.4:+88015965	None:intergenic
ACTGTGTTTCCAATAAATGC+TGG	0.591200	7.4:+88013309	None:intergenic
AGATTCCAATCTAATTTACT+AGG	0.388107	7.4:+88013596	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGATTTCTTGCAACACA+AGG	+	chr7.4:88015648-88015667	None:intergenic	30.0%
AAGCTAACAGAGAAACAATT+TGG	+	chr7.4:88015615-88015634	None:intergenic	30.0%
AATGATACTACTAATCTGGA+TGG	-	chr7.4:88012340-88012359	MS.gene49515:intron	30.0%
AGATGAAAAGTGAATAGAAG+TGG	+	chr7.4:88013290-88013309	None:intergenic	30.0%
ATTGATTGACATGAATGTTC+AGG	+	chr7.4:88013260-88013279	None:intergenic	30.0%
CATCCTCTTAATAATCTGTA+AGG	+	chr7.4:88014984-88015003	None:intergenic	30.0%
CATTCCCTAGTAAATTAGAT+TGG	-	chr7.4:88015494-88015513	MS.gene49515:intron	30.0%
CATTTATTTGCTCAACTAAC+TGG	-	chr7.4:88016528-88016547	MS.gene49515:CDS	30.0%
CGACACAAAATAATAAACCT+AGG	+	chr7.4:88013660-88013679	None:intergenic	30.0%
CTCAATTTCTTCTTCCATAT+TGG	-	chr7.4:88015674-88015693	MS.gene49515:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	88012095	88017022	88012095	ID=MS.gene49515
chr7.4	mRNA	88012095	88017022	88012095	ID=MS.gene49515.t1;Parent=MS.gene49515
chr7.4	exon	88016962	88017022	88016962	ID=MS.gene49515.t1.exon1;Parent=MS.gene49515.t1
chr7.4	CDS	88016962	88017022	88016962	ID=cds.MS.gene49515.t1;Parent=MS.gene49515.t1
chr7.4	exon	88016824	88016867	88016824	ID=MS.gene49515.t1.exon2;Parent=MS.gene49515.t1
chr7.4	CDS	88016824	88016867	88016824	ID=cds.MS.gene49515.t1;Parent=MS.gene49515.t1
chr7.4	exon	88016307	88016594	88016307	ID=MS.gene49515.t1.exon3;Parent=MS.gene49515.t1
chr7.4	CDS	88016307	88016594	88016307	ID=cds.MS.gene49515.t1;Parent=MS.gene49515.t1
chr7.4	exon	88016143	88016199	88016143	ID=MS.gene49515.t1.exon4;Parent=MS.gene49515.t1
chr7.4	CDS	88016143	88016199	88016143	ID=cds.MS.gene49515.t1;Parent=MS.gene49515.t1
chr7.4	exon	88015967	88016035	88015967	ID=MS.gene49515.t1.exon5;Parent=MS.gene49515.t1
chr7.4	CDS	88015967	88016035	88015967	ID=cds.MS.gene49515.t1;Parent=MS.gene49515.t1
chr7.4	exon	88015495	88015612	88015495	ID=MS.gene49515.t1.exon6;Parent=MS.gene49515.t1
chr7.4	CDS	88015495	88015612	88015495	ID=cds.MS.gene49515.t1;Parent=MS.gene49515.t1
chr7.4	exon	88015237	88015270	88015237	ID=MS.gene49515.t1.exon7;Parent=MS.gene49515.t1
chr7.4	CDS	88015237	88015270	88015237	ID=cds.MS.gene49515.t1;Parent=MS.gene49515.t1
chr7.4	exon	88014394	88014511	88014394	ID=MS.gene49515.t1.exon8;Parent=MS.gene49515.t1
chr7.4	CDS	88014394	88014511	88014394	ID=cds.MS.gene49515.t1;Parent=MS.gene49515.t1
chr7.4	exon	88014162	88014282	88014162	ID=MS.gene49515.t1.exon9;Parent=MS.gene49515.t1
chr7.4	CDS	88014162	88014282	88014162	ID=cds.MS.gene49515.t1;Parent=MS.gene49515.t1
chr7.4	exon	88013541	88013629	88013541	ID=MS.gene49515.t1.exon10;Parent=MS.gene49515.t1
chr7.4	CDS	88013541	88013629	88013541	ID=cds.MS.gene49515.t1;Parent=MS.gene49515.t1
chr7.4	exon	88013311	88013412	88013311	ID=MS.gene49515.t1.exon11;Parent=MS.gene49515.t1
chr7.4	CDS	88013311	88013412	88013311	ID=cds.MS.gene49515.t1;Parent=MS.gene49515.t1
chr7.4	exon	88012951	88013069	88012951	ID=MS.gene49515.t1.exon12;Parent=MS.gene49515.t1
chr7.4	CDS	88012951	88013069	88012951	ID=cds.MS.gene49515.t1;Parent=MS.gene49515.t1
chr7.4	exon	88012745	88012841	88012745	ID=MS.gene49515.t1.exon13;Parent=MS.gene49515.t1
chr7.4	CDS	88012745	88012841	88012745	ID=cds.MS.gene49515.t1;Parent=MS.gene49515.t1
chr7.4	exon	88012095	88012205	88012095	ID=MS.gene49515.t1.exon14;Parent=MS.gene49515.t1
chr7.4	CDS	88012095	88012205	88012095	ID=cds.MS.gene49515.t1;Parent=MS.gene49515.t1

Gene Sequence

>MS.gene49515

ATGGGTGGAGGCAGCAAAAGCCGAACAAAAAAGAAATCCAAGTCTAAGAAGAAGAAACTGAGTCTGTTCCTCTCTCTATCTATCTTTTCCAATTTTCATAACATTTACTAGTATTTATCTTTCGACTAATTCCATTTTTTATTTTTATTTTGTAGCATCTTCTGAACGTGAATCTATTTATGATCAGATTTATCATCAGGTGTGTTTAATTTTAACTAACTTGTTATGTTGGTTCACTGATATAAAATGATACTACTAATCTGGATGGATAAAACTCACATATGATATGATATGATATGAATTGTTAATTTGGTTATGGTAACAAAAACTTATAACATGATGATGATGATGATGATATTGGCTCTCTGTATAGGTTTCTGTCTCTCTTACTTTCATTATATCATCTTCCATTGTATTTGTATTTGTAGGTACTATCTGATATACAAGCCAAAAAAGTAGCAGAAGAAGAGGAAGCCCGTCGATTAGCAGAAGAGGCTCTTGCTAAAAAAAAAGCAGAAGAAGAGGATGCCCGTCGATTAGCAAAAGAGGCTCTTGCTCAAAAAAAACTGCAGGCCCGCAAAGCAAAAGAGGCAGCAGAAAAGACTCTTGCTCTAAATTCACTCTGGTCATTGGCTGATGCAATGCGCTGTCGTTCCTACCCAAACATGACTACAAAAACGCTTTTTCTAAAACTTGCAAAATCTACAAACACAGCCGTAGGTTTTCTTAAAAATTGCTCTAGGATTGTCTTGTCCTTTCCTTACTAAGAAACAACGTGCTTGAATTTTGAATTTATTCATGAAATTTTGTAATCTGTATGCAGCTGGACCATGAAGATGATACGCTTTTTCGAAAACTTGCAAAAGCTACAAACACAGCCGTAGGTTTTCTTAAAAATTCCTCTAGGATTGTCTTGTCCTTTCCTTACTAAGAAACAACGTGCTTGAATTTTGAATTTATTCATGAAATTTTGTAATCTGTATGCAGCTGGACCATGAAGATGATACAGCTTCACCAATTCAACCTGTGCACATGCCAACACAATATGGCAAGGTGGTGAGCCTTCTACAAGACTTTTTTTTATTTTTATATGACCTGCATAAACCTATCTCCTGTTCATGAAACTGCCTAATGTGTGTGTCTGGATATTAGTTGAATGCAACCTGAACATTCATGTCAATCAATAAGTATACCACTTCTATTCACTTTTCATCTTGAAGTCAGTGTTAACTTACTTTGTACTCAGTGATTCAAACATAGCCATAGCTTTTCTTTAAAATTGGGATACTTCTTGCTAATACACCAAATGGAGAGAGCCTTAGGCAATGCCCTCTAGGACTGTCTTCTTTCCTTACTTATAAGAAATTAAGCAAAAGGGACGTGCTTCAATTTTTAATTATGTATTTGCAGGTCAACTATGAAAATGATATGAAGCCCTTGGATGCCAGCAGCAGCCAGCCGTTGGATGAGCTCAACAAGTCAGCACAAAACGTTAGCCTTGAGGATAAAGCTGCTGTTCAGGAGGGGGGTATTGGCAGCGCCCAACTACTCTAGATATTGGACCTAGGTTTATTATTTTGTGTCGCATAGCCTAGTTGTTGCAAGTGTACTATGAAATGGCTTCTGGAGTAAGCGAGCAACCAGAGAAACAATATTTATAACTAATAGTGTGGCTTTGTAATATGTTCTGAATCCTTCTACTTCCTATGCATACTTGGAGAAGTTGTGTTAGCAGTGCATACCTTGGTCAAGCTATTTATTCAACTGCATATCTGACCTTAGTTAGGTGACATTCGTCATGAGCATTGCCAGATTACCATTTAATGTTATTCACGTTTCCAATTTTGCCTCTTGCAAAAAACTTTTGTTCGCAAAAACCAAAGTTTTTTTTGCCTTGAAAACAAAATTTGGTTTCTAAAAACCGAATTTTTCATTGGTTTCTAAAAACCGAATTTTTCATGAATTTACAAGGGCAAATTCTCAAATTTAATTTAATACCGTTAACTTGACTTTTTCGTTTTCTAAGAGAGTATATTATTAATGGTGTTGATTTGGTGGATTTTTTTTGGTACATTGATTTGGTGGATTTTATTATACCTTTTTACTGTTTAAACGAAAGTATATGTATTGTCAATAGTGATGCACGAATTATTGAAAGCTCCAGAAAAATTAATGTATTGTTAAATGAATATCATATTGAAACAAGAAATGATATTTGTCTAAAGATATATTTGTCTTAAATGAATATCGTATTGAAACAAGAAATGAAGAGATGCTGAATATCTCTATATATTACGACACATATTTTAGATAAAATAAGTGTAATGAAAAAGTTATAAACCAGAAGTTTATACTACACTTTTAAATATACCAGTGCAATTGAAGCACAAATTATTGTTTAAGTATCAATAAAAAACTTAGTTTTACAGGTATACTAATGCAATACATATATATAATTAAATTTTCTGCACATTACCATATAAATTTTTGTTGAATTTATTTACTTTGAAGGTTTCTTTCTGAGCGATGCCCTTTAATTCGTGCATATGGTGCTATCCGATTCAATGCAAAAGCCAAGGTTTCATCAGAGTGGCTGGCTTTTGGTTCTTTCTACTTCATGATTCCTCAGGTGCATACATCGTGTTATTTCCAAAAAACTAATTAGCTATTCCATTTGTGTTACTGTGTTAGTATTTATAGCATTGAAAGCCAGAGATATCTGACCGAAAAAAATTGACAGGTTGAATTTAATGAGCTTGAAGGAGGATCAATGCTTACCACTACTATTGCTTGGGATAATGCTCTTGCTTGGTCATGGGAAAATGCTACGAGTGTACTTCAAGAAACATTTTACAAAGTGAGTGTAAATAGAGATTTAAGTGAGTGCCTTACAGATTATTAAGAGGATGATTTGTTGAAATAATTGAGATACTCTTTACAATGTCTCTATTCTAGTTTACATTGAGTACTTTTATTGTTAAACACAATTAATAAAAAGGCACTGAAGCCACTCTGCAGTCAGAGACGTAGGTACAATTGGTCGAACTCCGCGATCAAATATCGTGTGTTCTCTTTTTGTATTTTTCATATTTTGAACCAAAGTTTCTGTTCTAACAAATTGGTCGATATATAGGATACTTTGGATTAGGATTCTTGCATGACCAGCTCTAGGTTGTTAATCATTCAACCTCTTGTGTCCTAGTGTTTTCTTTATTTAATATTCTTTGAATGACCAAAAATGGAATTAAGTAGGAAAAAGATGAATTTCAATGCATGATCAAACATTGTTAATAGATTTAGTTGAGGGATTAACCATACATTTTTTTTGCTGCAGGTTTCTTCTTCCATAGTGAAGTTTCCCAAGCAAGCTCCTCCAGCATTGATACTAAGCAGCCATAACATTCCCTAGTAAATTAGATTGGAATCTTGCTGTTAATAAAGCTTTGCAGATGATAGAGCGAAATGATTCTTCGCTCTCCAAGGTCAACTACATCTCAATCTTGCTGCTTATTTTTGTCCAAATTGTTTCTCTGTTAGCTTTTGCATCATTCCTTGTGTTGCAAGAAATCATTTGAAAAGCTCAATTTCTTCTTCCATATTGGAAACTCAGGTTGTTCTAGCATGGAGCACTAGAGTATTGCCTACTGCTATTATCGATCCTTACCAGTTTTTCCTTCAGCCGCCTAATGCACCAGCATTTATTGGAAACACAGTAAGTTACTATTTCAAGATATGCTAAAATTTCGACAAAATATATCCATGAAATGAATTTCGCTTAATATTTTAAGTTACTATCTAAGTTATGCTTTATAAATTTTCGTCAAAATAGGATGATTTTGTTTACCTCAAAAGGTGGACAACCTTTCTTGAAACTCTATTTTGAATTGAATCAGCAGCAATGATACATTTTACTGCTATGTTTCCATTTTAATTTTTATGTACTTGATGAATAGCCAGAGCAACTCTTTCACAGAAAAGGCCTACATATCACTAGTGATGCTTTGGCCGCAACCCGTGCTAGAGGAGTGTCACTAGAACTAGACCATCAAATTGAACTTGACCTGCTTACCAGGTTTACCTTGTTGCTTAAGGCTTTGATTTAAACACTGTTGTTTAATGGTTGTTTTCATCGATGCTTGTGATTTTTTCTTATTGTTTTCTGTTTGCTTTTGGTCATACAGTCTGAAGGACGACATCGAGTTTACTATAGTAAGAGAGACCATAAGAAGAAAATTAGAGGCAAGTTTTACGATTGTTAGCATGAATTGCTTTATTAAAGTATATACACTTCCCAATACATTTATAAATCCACGATTTTGGTCCTCCAAATTTTAAAAAAAAAAAAATCGACCTTGGAAGTGTTTTGGAAGGCAGTCTGCGAAAAAGTTACAATCGATTCAACGAAAATGGTCAGAAAACTACTGAGGATCCAACATTTATTTGCTCAACTAACTGGCAGGTTAAGAAGTGAAGAGGATGAGGTAACCATGATACAATTTAAGTTGGAAAGAGCAAAGTTTTCAATCTTTACAATGAAACTATGAAAGCACCTTTATTAAATTTTCACACCATATAACTAAGGTGTCAAATTTTCTCTCTTTTTTTAGTTTGAAATTTTGTCATCACTTCACCAAGTCCCGCAGTTTGTGGATTTCCAACAGAAGAGGCACAACTTTTAATTGCAGAAACAGGTGCATTCATTTTTTATAAGATGTTCTTCAAATGACTTTAGACCTAAGCATTTATGTTTTTCTTTTAGAAATGTAAAATGTGGTTTAACTTGGTAAAATGTTCTTACTTTGAAACATGGTGTTCAGAAGTGTTTGATCGAGGAATGTATGCTGGACTTGTTGGTTGGTTTGGAGGAGGAGAGAGTGAGTTTGCCGTTGGCATCAGATCAGCATTGGTGGAAGAGGTTAGATATGTAA

Protein sequence

>MS.gene49515.t1

MGGGSKSRTKKKSKSKKKKLTSSERESIYDQIYHQVLSDIQAKKVAEEEEARRLAEEALAKKKAEEEDARRLAKEALAQKKLQARKAKEAAEKTLALNSLWSLADAMRCRSYPNMTTKTLFLKLAKSTNTALDHEDDTLFRKLAKATNTALDHEDDTASPIQPVHMPTQYGKVVNYENDMKPLDASSSQPLDELNKSAQNVSLEDKAAVQEGAIYSTAYLTLVRFLSERCPLIRAYGAIRFNAKAKVSSEWLAFGSFYFMIPQVEFNELEGGSMLTTTIAWDNALAWSWENATSVLQETFYKVTITFPSKLDWNLAVNKALQMIERNDSSLSKVVLAWSTRVLPTAIIDPYQFFLQPPNAPAFIGNTPEQLFHRKGLHITSDALAATRARGVSLELDHQIELDLLTSLKDDIEFTIVRETIRRKLEASFTIVSMNCFIKKCLIEECMLDLLVGLEEERVSLPLASDQHWWKRLDM