Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49550.t1 | AFK49677.1 | 88.2 | 296 | 4 | 1 | 1 | 296 | 12 | 276 | 1.60E-122 | 449.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49550.t1 | Q14919 | 39.4 | 109 | 35 | 1 | 1 | 109 | 15 | 92 | 7.8e-14 | 79.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49550.t1 | I3TAY5 | 88.2 | 296 | 4 | 1 | 1 | 296 | 12 | 276 | 1.1e-122 | 449.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene49550 | MS.gene42075 | PPI |
| MS.gene76728 | MS.gene49550 | PPI |
| MS.gene87743 | MS.gene49550 | PPI |
| MS.gene87064 | MS.gene49550 | PPI |
| MS.gene49550 | MS.gene82237 | PPI |
| MS.gene77045 | MS.gene49550 | PPI |
| MS.gene49550 | MS.gene48819 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49550.t1 | MTR_3g012030 | 87.838 | 296 | 5 | 1 | 1 | 296 | 12 | 276 | 1.50e-173 | 481 |
| MS.gene49550.t1 | MTR_3g012030 | 87.586 | 290 | 5 | 1 | 7 | 296 | 1 | 259 | 3.21e-169 | 470 |
| MS.gene49550.t1 | MTR_3g012030 | 98.140 | 215 | 4 | 0 | 82 | 296 | 1 | 215 | 4.49e-158 | 440 |
| MS.gene49550.t1 | MTR_8g041420 | 61.489 | 309 | 71 | 7 | 1 | 293 | 12 | 288 | 5.11e-108 | 316 |
| MS.gene49550.t1 | MTR_5g088760 | 45.912 | 318 | 103 | 9 | 1 | 293 | 3 | 276 | 1.14e-51 | 171 |
| MS.gene49550.t1 | MTR_5g088760 | 45.912 | 318 | 103 | 9 | 1 | 293 | 12 | 285 | 1.34e-51 | 172 |
| MS.gene49550.t1 | MTR_5g047770 | 85.393 | 89 | 13 | 0 | 191 | 279 | 54 | 142 | 7.36e-49 | 159 |
| MS.gene49550.t1 | MTR_5g088760 | 44.872 | 312 | 103 | 9 | 7 | 293 | 1 | 268 | 2.08e-47 | 160 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49550.t1 | AT3G12480 | 44.805 | 308 | 114 | 10 | 1 | 294 | 12 | 277 | 1.21e-62 | 200 |
| MS.gene49550.t1 | AT5G19490 | 48.408 | 157 | 42 | 5 | 1 | 156 | 12 | 130 | 1.39e-36 | 132 |
Find 67 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTATTTCTTTGTTAAATTT+TGG | 0.059835 | 3.1:-8394207 | MS.gene49550:CDS |
| TTGCAGCAGGCTCAGGCAAT+GGG | 0.298692 | 3.1:+8392542 | None:intergenic |
| AGGGGAAGAGGAAGGGGTAG+AGG | 0.303468 | 3.1:-8392838 | MS.gene49550:CDS |
| TTACAAATGCAATGCATTCA+TGG | 0.332233 | 3.1:+8394053 | None:intergenic |
| AGCAACTCACAAACTAAAAC+AGG | 0.338422 | 3.1:+8394234 | None:intergenic |
| TGGACTTCGAACCTTCTCTT+TGG | 0.350657 | 3.1:+8393418 | None:intergenic |
| AGAGGCTAAGCGGAGTAAAA+TGG | 0.373594 | 3.1:-8393280 | MS.gene49550:intron |
| GTTGCAGCAGGCTCAGGCAA+TGG | 0.392246 | 3.1:+8392541 | None:intergenic |
| TGGCATTCAGATCAATGTTT+CGG | 0.398272 | 3.1:+8392620 | None:intergenic |
| ACAAGTATGGCAATAGATAA+TGG | 0.399112 | 3.1:-8392706 | MS.gene49550:CDS |
| AGAGGAAGAGGCCGCGGTCG+AGG | 0.425950 | 3.1:-8392820 | MS.gene49550:CDS |
| AGATTCAACCTGCTGATGTA+AGG | 0.427032 | 3.1:+8392774 | None:intergenic |
| AGACGTCCGCAATACAAGTA+TGG | 0.427604 | 3.1:-8392719 | MS.gene49550:CDS |
| AGAGGAAGGGGTAGAGGAAG+AGG | 0.428938 | 3.1:-8392832 | MS.gene49550:CDS |
| GTTTGATTACAGCTTGAGTT+GGG | 0.437970 | 3.1:-8392880 | MS.gene49550:intron |
| TCAGGCAATGGGGCCTGAGC+AGG | 0.439755 | 3.1:+8392553 | None:intergenic |
| CCACACTGGCGGTACTGGTA+GGG | 0.444180 | 3.1:-8392857 | MS.gene49550:CDS |
| TTGGGCCACACTGGCGGTAC+TGG | 0.449291 | 3.1:-8392862 | MS.gene49550:CDS |
| GGCGGTACTGGTAGGGGAAG+AGG | 0.449384 | 3.1:-8392850 | MS.gene49550:CDS |
| ATGCAACATGAAGAAATTCC+AGG | 0.456390 | 3.1:-8392511 | MS.gene49550:CDS |
| TGTTTGATTACAGCTTGAGT+TGG | 0.458715 | 3.1:-8392881 | MS.gene49550:intron |
| ACTGGTAGGGGAAGAGGAAG+GGG | 0.463619 | 3.1:-8392844 | MS.gene49550:CDS |
| GTAGAGTTATTTCATAAGTC+CGG | 0.468953 | 3.1:+8394091 | None:intergenic |
| TGCATATCTGTTGTTGCAGC+AGG | 0.476096 | 3.1:+8392529 | None:intergenic |
| AGGGGTAGAGGAAGAGGCCG+CGG | 0.479703 | 3.1:-8392826 | MS.gene49550:CDS |
| AAGAGAAACCTTACATCAGC+AGG | 0.497349 | 3.1:-8392782 | MS.gene49550:CDS |
| GCCACACTGGCGGTACTGGT+AGG | 0.501008 | 3.1:-8392858 | MS.gene49550:CDS |
| GGACATGGCCATTCTGAGGC+TGG | 0.501930 | 3.1:-8393460 | MS.gene49550:CDS |
| CACACTGGCGGTACTGGTAG+GGG | 0.503334 | 3.1:-8392856 | MS.gene49550:CDS |
| TCTGTTGTTGCAGCAGGCTC+AGG | 0.507661 | 3.1:+8392535 | None:intergenic |
| GAGGAAGAGGCCGCGGTCGA+GGG | 0.509630 | 3.1:-8392819 | MS.gene49550:CDS |
| CCATGTCCGTGGCTATAGTC+AGG | 0.512389 | 3.1:+8393475 | None:intergenic |
| CTGCAGCTTGCAGCAAACCT+TGG | 0.517052 | 3.1:-8392448 | None:intergenic |
| GGTCAACAACATGAGAGAAA+AGG | 0.521668 | 3.1:+8394172 | None:intergenic |
| ATGCAAGCTGACGAGGATGT+TGG | 0.531354 | 3.1:-8394276 | MS.gene49550:CDS |
| CATCAGCGCCAGCCTCAGAA+TGG | 0.533148 | 3.1:+8393452 | None:intergenic |
| CCATCTTGTCGACATCAGAA+AGG | 0.538115 | 3.1:+8392482 | None:intergenic |
| AAGCACAGATATACCTGCTC+AGG | 0.539470 | 3.1:-8392566 | MS.gene49550:CDS |
| TACTGGTAGGGGAAGAGGAA+GGG | 0.550796 | 3.1:-8392845 | MS.gene49550:CDS |
| CCTTTCTGATGTCGACAAGA+TGG | 0.555115 | 3.1:-8392482 | MS.gene49550:CDS |
| CAGCTTGAGTTGGGCCACAC+TGG | 0.562286 | 3.1:-8392871 | MS.gene49550:CDS |
| CATCTTGTCGACATCAGAAA+GGG | 0.562835 | 3.1:+8392483 | None:intergenic |
| AGGAAGAGGCCGCGGTCGAG+GGG | 0.567783 | 3.1:-8392818 | MS.gene49550:CDS |
| CTATTGCCATACTTGTATTG+CGG | 0.574433 | 3.1:+8392713 | None:intergenic |
| AGATAATGGTTCAGAACCAA+AGG | 0.574615 | 3.1:-8392692 | MS.gene49550:CDS |
| TTTGAGAGACATTGTCAGCA+GGG | 0.585914 | 3.1:-8393500 | MS.gene49550:CDS |
| TTGCAATGACAGCGATGAAG+AGG | 0.586083 | 3.1:-8393298 | MS.gene49550:CDS |
| ACATCAGAAAGGGACCAACC+TGG | 0.595072 | 3.1:+8392493 | None:intergenic |
| GTACTGGTAGGGGAAGAGGA+AGG | 0.602926 | 3.1:-8392846 | MS.gene49550:CDS |
| AGAACCAAAGGAGTTATCAA+AGG | 0.605334 | 3.1:-8392680 | MS.gene49550:CDS |
| ATCGTGCTGTTCCAAAGAGA+AGG | 0.608205 | 3.1:-8393429 | MS.gene49550:intron |
| TGCAGCAGGCTCAGGCAATG+GGG | 0.617358 | 3.1:+8392543 | None:intergenic |
| CCACGGACATGGCCATTCTG+AGG | 0.617948 | 3.1:-8393464 | MS.gene49550:CDS |
| GAAGATAATGCAAGCTGACG+AGG | 0.619085 | 3.1:-8394283 | MS.gene49550:CDS |
| CCTGACTATAGCCACGGACA+TGG | 0.621947 | 3.1:-8393475 | MS.gene49550:CDS |
| CTTGAGTTGGGCCACACTGG+CGG | 0.626402 | 3.1:-8392868 | MS.gene49550:CDS |
| GTTTGCTGAATAGAAGTGCA+AGG | 0.627861 | 3.1:+8392748 | None:intergenic |
| GGATGTTGGAAAGATAGCAC+TGG | 0.629786 | 3.1:-8394262 | MS.gene49550:CDS |
| ATGTTTGCCAGGAAAGCTGC+TGG | 0.632479 | 3.1:-8393327 | MS.gene49550:intron |
| AGGGTTCCTGACTATAGCCA+CGG | 0.641831 | 3.1:-8393481 | MS.gene49550:CDS |
| AACATGAAGAAATTCCAGGT+TGG | 0.648140 | 3.1:-8392507 | MS.gene49550:CDS |
| CCTCAGAATGGCCATGTCCG+TGG | 0.649675 | 3.1:+8393464 | None:intergenic |
| CAGTTCGAGCCCCTCGACCG+CGG | 0.651823 | 3.1:+8392809 | None:intergenic |
| CCCTACCAGTACCGCCAGTG+TGG | 0.652289 | 3.1:+8392857 | None:intergenic |
| GCAACTCACAAACTAAAACA+GGG | 0.681922 | 3.1:+8394235 | None:intergenic |
| ACAGCGATGAAGAGGCTAAG+CGG | 0.705575 | 3.1:-8393290 | MS.gene49550:CDS |
| TATGAAATAACTCTACAGAG+AGG | 0.731792 | 3.1:-8394084 | MS.gene49550:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTATAAAATAAGTGATTT+TGG | - | chr3.1:8392988-8393007 | MS.gene49550:intron | 10.0% |
| !!! | TTATTTCTTTGTTAAATTTT+GGG | - | chr3.1:8392537-8392556 | MS.gene49550:CDS | 10.0% |
| !!! | GTTATTTCTTTGTTAAATTT+TGG | - | chr3.1:8392536-8392555 | MS.gene49550:CDS | 15.0% |
| !!! | TATTTTCTATATTTTTCTTG+AGG | - | chr3.1:8392727-8392746 | MS.gene49550:CDS | 15.0% |
| !! | AAAAATTGTAAGAAACTAGA+AGG | - | chr3.1:8393784-8393803 | MS.gene49550:intron | 20.0% |
| !! | AATAAAAAGATAAAAGCTAC+TGG | + | chr3.1:8393348-8393367 | None:intergenic | 20.0% |
| !! | ACTTATTTGAATTTATCTAC+TGG | + | chr3.1:8393692-8393711 | None:intergenic | 20.0% |
| !! | GATTTAATGATTAAGAATTG+AGG | - | chr3.1:8392812-8392831 | MS.gene49550:CDS | 20.0% |
| !!! | ATTGTTTTCATACAAGTTAT+AGG | - | chr3.1:8393585-8393604 | MS.gene49550:intron | 20.0% |
| !!! | TTTTATAATTCGTAACAAAC+AGG | + | chr3.1:8392978-8392997 | None:intergenic | 20.0% |
| ! | ACATTTGATTCCCAATTATA+AGG | + | chr3.1:8393752-8393771 | None:intergenic | 25.0% |
| ! | ATTCCCAATTATAAGGTTAT+AGG | + | chr3.1:8393745-8393764 | None:intergenic | 25.0% |
| ! | CTGTAAAAAAATCAAGACTA+AGG | + | chr3.1:8392595-8392614 | None:intergenic | 25.0% |
| ! | TAAAAGCAGTGTATTTCATA+AGG | - | chr3.1:8393649-8393668 | MS.gene49550:intron | 25.0% |
| ! | TTATTTCCATATGCTCATTA+GGG | + | chr3.1:8393627-8393646 | None:intergenic | 25.0% |
| !! | AAATTTTCCCAAAACTCTAT+TGG | + | chr3.1:8392946-8392965 | None:intergenic | 25.0% |
| !! | AATTTTCCCAAAACTCTATT+GGG | + | chr3.1:8392945-8392964 | None:intergenic | 25.0% |
| !! | ACCTTAAATGTAAAGCATTT+GGG | - | chr3.1:8392903-8392922 | MS.gene49550:intron | 25.0% |
| !! | TATCTAAAATCTGCTTTGAA+TGG | + | chr3.1:8393132-8393151 | None:intergenic | 25.0% |
| !! | TGTATAGGTTTTCGATAAAA+GGG | + | chr3.1:8393495-8393514 | None:intergenic | 25.0% |
| !! | TTGTATAGGTTTTCGATAAA+AGG | + | chr3.1:8393496-8393515 | None:intergenic | 25.0% |
| !! | TTTTATCGAAAACCTATACA+AGG | - | chr3.1:8393495-8393514 | MS.gene49550:CDS | 25.0% |
| ACAAGTATGGCAATAGATAA+TGG | - | chr3.1:8394037-8394056 | MS.gene49550:intron | 30.0% | |
| ACCCAAATGCTTTACATTTA+AGG | + | chr3.1:8392907-8392926 | None:intergenic | 30.0% | |
| AGCACCTATAACCTTATAAT+TGG | - | chr3.1:8393738-8393757 | MS.gene49550:intron | 30.0% | |
| ATAGGTGCTTATGAATAAAG+AGG | + | chr3.1:8393727-8393746 | None:intergenic | 30.0% | |
| CTTATTTCCATATGCTCATT+AGG | + | chr3.1:8393628-8393647 | None:intergenic | 30.0% | |
| GCACCTATAACCTTATAATT+GGG | - | chr3.1:8393739-8393758 | MS.gene49550:intron | 30.0% | |
| TATGAAATAACTCTACAGAG+AGG | - | chr3.1:8392659-8392678 | MS.gene49550:CDS | 30.0% | |
| TGGGAATCAAATGTTTATCT+CGG | - | chr3.1:8393758-8393777 | MS.gene49550:intron | 30.0% | |
| TTACAAATGCAATGCATTCA+TGG | + | chr3.1:8392693-8392712 | None:intergenic | 30.0% | |
| ! | ATATCTCCCAATAGAGTTTT+GGG | - | chr3.1:8392936-8392955 | MS.gene49550:intron | 30.0% |
| ! | CACCTTAAATGTAAAGCATT+TGG | - | chr3.1:8392902-8392921 | MS.gene49550:intron | 30.0% |
| ! | GTAGAGTTATTTCATAAGTC+CGG | + | chr3.1:8392655-8392674 | None:intergenic | 30.0% |
| ! | TATATCTCCCAATAGAGTTT+TGG | - | chr3.1:8392935-8392954 | MS.gene49550:intron | 30.0% |
| !! | TTTTCCTTTGATAACTCCTT+TGG | + | chr3.1:8394070-8394089 | None:intergenic | 30.0% |
| !! | TTTTGGGAAAATTTACTGTC+GGG | - | chr3.1:8392952-8392971 | MS.gene49550:intron | 30.0% |
| !!! | GTTTTGGGAAAATTTACTGT+CGG | - | chr3.1:8392951-8392970 | MS.gene49550:intron | 30.0% |
| AACACCAGCACAAGTAAAAT+CGG | + | chr3.1:8392791-8392810 | None:intergenic | 35.0% | |
| AACATGAAGAAATTCCAGGT+TGG | - | chr3.1:8394236-8394255 | MS.gene49550:CDS | 35.0% | |
| AAGTAAAATCGGTCTATGCA+TGG | + | chr3.1:8392780-8392799 | None:intergenic | 35.0% | |
| AATTTCCGATTCTCATCTCT+CGG | - | chr3.1:8392842-8392861 | MS.gene49550:CDS | 35.0% | |
| AGAACCAAAGGAGTTATCAA+AGG | - | chr3.1:8394063-8394082 | MS.gene49550:CDS | 35.0% | |
| AGCAACTCACAAACTAAAAC+AGG | + | chr3.1:8392512-8392531 | None:intergenic | 35.0% | |
| ATGCAACATGAAGAAATTCC+AGG | - | chr3.1:8394232-8394251 | MS.gene49550:CDS | 35.0% | |
| CTATTGCCATACTTGTATTG+CGG | + | chr3.1:8394033-8394052 | None:intergenic | 35.0% | |
| GCAACTCACAAACTAAAACA+GGG | + | chr3.1:8392511-8392530 | None:intergenic | 35.0% | |
| GTTTGATTACAGCTTGAGTT+GGG | - | chr3.1:8393863-8393882 | MS.gene49550:intron | 35.0% | |
| TAAGGTGATCAGTTCATACT+TGG | + | chr3.1:8392889-8392908 | None:intergenic | 35.0% | |
| TGCATTGCATTTGTAAGTTG+TGG | - | chr3.1:8392697-8392716 | MS.gene49550:CDS | 35.0% | |
| TGGCATTCAGATCAATGTTT+CGG | + | chr3.1:8394126-8394145 | None:intergenic | 35.0% | |
| TGTTTGATTACAGCTTGAGT+TGG | - | chr3.1:8393862-8393881 | MS.gene49550:intron | 35.0% | |
| TTCCTGGCAAACATTCTTAA+CGG | + | chr3.1:8393410-8393429 | None:intergenic | 35.0% | |
| ! | AGATAATGGTTCAGAACCAA+AGG | - | chr3.1:8394051-8394070 | MS.gene49550:intron | 35.0% |
| ! | TTTTGCAAGATCTTTGTGAC+CGG | - | chr3.1:8392633-8392652 | MS.gene49550:CDS | 35.0% |
| ! | TTTTTCTTGAGGAAACCTTC+AGG | - | chr3.1:8392738-8392757 | MS.gene49550:CDS | 35.0% |
| !! | ATAAGCACTTAGCCTTGTAT+AGG | + | chr3.1:8393510-8393529 | None:intergenic | 35.0% |
| !! | TTTTTAGTCATGATCGACGA+TGG | - | chr3.1:8393832-8393851 | MS.gene49550:intron | 35.0% |
| !!! | TTTTTTTACAGCGAAAGCTC+TGG | - | chr3.1:8392604-8392623 | MS.gene49550:CDS | 35.0% |
| AACCGTTAAGAATGTTTGCC+AGG | - | chr3.1:8393405-8393424 | MS.gene49550:intron | 40.0% | |
| AAGAGAAACCTTACATCAGC+AGG | - | chr3.1:8393961-8393980 | MS.gene49550:intron | 40.0% | |
| AAGCTACCCTAATGAGCATA+TGG | - | chr3.1:8393618-8393637 | MS.gene49550:intron | 40.0% | |
| AGATTCAACCTGCTGATGTA+AGG | + | chr3.1:8393972-8393991 | None:intergenic | 40.0% | |
| CACAAACAATTCACACCTGA+AGG | + | chr3.1:8392756-8392775 | None:intergenic | 40.0% | |
| CAGTGGTGAACACAAATTTC+AGG | - | chr3.1:8393185-8393204 | MS.gene49550:intron | 40.0% | |
| CATCTTGTCGACATCAGAAA+GGG | + | chr3.1:8394263-8394282 | None:intergenic | 40.0% | |
| CTGAAATTTGTGTTCACCAC+TGG | + | chr3.1:8393187-8393206 | None:intergenic | 40.0% | |
| GGTCAACAACATGAGAGAAA+AGG | + | chr3.1:8392574-8392593 | None:intergenic | 40.0% | |
| TCATGACTAAAAACTGCAGC+AGG | + | chr3.1:8393825-8393844 | None:intergenic | 40.0% | |
| TGATCAGTTCATACTTGGCA+TGG | + | chr3.1:8392884-8392903 | None:intergenic | 40.0% | |
| TTTGACCGAGAGATGAGAAT+CGG | + | chr3.1:8392850-8392869 | None:intergenic | 40.0% | |
| TTTGAGAGACATTGTCAGCA+GGG | - | chr3.1:8393243-8393262 | MS.gene49550:intron | 40.0% | |
| ! | GTCTTCGTTTTCATGCAAGT+TGG | + | chr3.1:8394146-8394165 | None:intergenic | 40.0% |
| ! | GTTTGCTGAATAGAAGTGCA+AGG | + | chr3.1:8393998-8394017 | None:intergenic | 40.0% |
| !! | TAGACCGATTTTACTTGTGC+TGG | - | chr3.1:8392784-8392803 | MS.gene49550:CDS | 40.0% |
| !! | TTTTGAGAGACATTGTCAGC+AGG | - | chr3.1:8393242-8393261 | MS.gene49550:intron | 40.0% |
| AAGCACAGATATACCTGCTC+AGG | - | chr3.1:8394177-8394196 | MS.gene49550:CDS | 45.0% | |
| AGACGTCCGCAATACAAGTA+TGG | - | chr3.1:8394024-8394043 | MS.gene49550:intron | 45.0% | |
| AGAGGCTAAGCGGAGTAAAA+TGG | - | chr3.1:8393463-8393482 | MS.gene49550:CDS | 45.0% | |
| CCATCTTGTCGACATCAGAA+AGG | + | chr3.1:8394264-8394283 | None:intergenic | 45.0% | |
| CCTTTCTGATGTCGACAAGA+TGG | - | chr3.1:8394261-8394280 | MS.gene49550:CDS | 45.0% | |
| GAAGATAATGCAAGCTGACG+AGG | - | chr3.1:8392460-8392479 | MS.gene49550:CDS | 45.0% | |
| GGATGTTGGAAAGATAGCAC+TGG | - | chr3.1:8392481-8392500 | MS.gene49550:CDS | 45.0% | |
| TCTCATCTCTCGGTCAAAGA+CGG | - | chr3.1:8392852-8392871 | MS.gene49550:CDS | 45.0% | |
| TGCATATCTGTTGTTGCAGC+AGG | + | chr3.1:8394217-8394236 | None:intergenic | 45.0% | |
| TGGACTTCGAACCTTCTCTT+TGG | + | chr3.1:8393328-8393347 | None:intergenic | 45.0% | |
| TGTGAGCTTAGTCTAACCAG+TGG | - | chr3.1:8393168-8393187 | MS.gene49550:intron | 45.0% | |
| TTGCAATGACAGCGATGAAG+AGG | - | chr3.1:8393445-8393464 | MS.gene49550:CDS | 45.0% | |
| ! | ATCGTGCTGTTCCAAAGAGA+AGG | - | chr3.1:8393314-8393333 | MS.gene49550:CDS | 45.0% |
| ACAGCGATGAAGAGGCTAAG+CGG | - | chr3.1:8393453-8393472 | MS.gene49550:CDS | 50.0% | |
| ACATCAGAAAGGGACCAACC+TGG | + | chr3.1:8394253-8394272 | None:intergenic | 50.0% | |
| AGGGTTCCTGACTATAGCCA+CGG | - | chr3.1:8393262-8393281 | MS.gene49550:intron | 50.0% | |
| ATCATCACCAGCAGCTTTCC+TGG | + | chr3.1:8393426-8393445 | None:intergenic | 50.0% | |
| ATGCAAGCTGACGAGGATGT+TGG | - | chr3.1:8392467-8392486 | MS.gene49550:CDS | 50.0% | |
| ATGTTTGCCAGGAAAGCTGC+TGG | - | chr3.1:8393416-8393435 | MS.gene49550:intron | 50.0% | |
| TACTGGTAGGGGAAGAGGAA+GGG | - | chr3.1:8393898-8393917 | MS.gene49550:intron | 50.0% | |
| ACTGGTAGGGGAAGAGGAAG+GGG | - | chr3.1:8393899-8393918 | MS.gene49550:intron | 55.0% | |
| AGAGGAAGGGGTAGAGGAAG+AGG | - | chr3.1:8393911-8393930 | MS.gene49550:intron | 55.0% | |
| CCATGTCCGTGGCTATAGTC+AGG | + | chr3.1:8393271-8393290 | None:intergenic | 55.0% | |
| CCTGACTATAGCCACGGACA+TGG | - | chr3.1:8393268-8393287 | MS.gene49550:intron | 55.0% | |
| CTGCAGCTTGCAGCAAACCT+TGG | - | chr3.1:8394295-8394314 | MS.gene49550:CDS | 55.0% | |
| TCTGTTGTTGCAGCAGGCTC+AGG | + | chr3.1:8394211-8394230 | None:intergenic | 55.0% | |
| TTGCAGCAGGCTCAGGCAAT+GGG | + | chr3.1:8394204-8394223 | None:intergenic | 55.0% | |
| ! | GTACTGGTAGGGGAAGAGGA+AGG | - | chr3.1:8393897-8393916 | MS.gene49550:intron | 55.0% |
| AGGGGAAGAGGAAGGGGTAG+AGG | - | chr3.1:8393905-8393924 | MS.gene49550:intron | 60.0% | |
| CATCAGCGCCAGCCTCAGAA+TGG | + | chr3.1:8393294-8393313 | None:intergenic | 60.0% | |
| CCACGGACATGGCCATTCTG+AGG | - | chr3.1:8393279-8393298 | MS.gene49550:intron | 60.0% | |
| CCTCAGAATGGCCATGTCCG+TGG | + | chr3.1:8393282-8393301 | None:intergenic | 60.0% | |
| GTTGCAGCAGGCTCAGGCAA+TGG | + | chr3.1:8394205-8394224 | None:intergenic | 60.0% | |
| TGCAGCAGGCTCAGGCAATG+GGG | + | chr3.1:8394203-8394222 | None:intergenic | 60.0% | |
| !! | CACACTGGCGGTACTGGTAG+GGG | - | chr3.1:8393887-8393906 | MS.gene49550:intron | 60.0% |
| !! | CAGCTTGAGTTGGGCCACAC+TGG | - | chr3.1:8393872-8393891 | MS.gene49550:intron | 60.0% |
| !! | CCACACTGGCGGTACTGGTA+GGG | - | chr3.1:8393886-8393905 | MS.gene49550:intron | 60.0% |
| !! | CTTGAGTTGGGCCACACTGG+CGG | - | chr3.1:8393875-8393894 | MS.gene49550:intron | 60.0% |
| !! | GGACATGGCCATTCTGAGGC+TGG | - | chr3.1:8393283-8393302 | MS.gene49550:CDS | 60.0% |
| AGGGGTAGAGGAAGAGGCCG+CGG | - | chr3.1:8393917-8393936 | MS.gene49550:intron | 65.0% | |
| CCCTACCAGTACCGCCAGTG+TGG | + | chr3.1:8393889-8393908 | None:intergenic | 65.0% | |
| TCAGGCAATGGGGCCTGAGC+AGG | + | chr3.1:8394193-8394212 | None:intergenic | 65.0% | |
| TTGGGCCACACTGGCGGTAC+TGG | - | chr3.1:8393881-8393900 | MS.gene49550:intron | 65.0% | |
| !! | GCCACACTGGCGGTACTGGT+AGG | - | chr3.1:8393885-8393904 | MS.gene49550:intron | 65.0% |
| !! | GGCGGTACTGGTAGGGGAAG+AGG | - | chr3.1:8393893-8393912 | MS.gene49550:intron | 65.0% |
| AGAGGAAGAGGCCGCGGTCG+AGG | - | chr3.1:8393923-8393942 | MS.gene49550:intron | 70.0% | |
| AGGAAGAGGCCGCGGTCGAG+GGG | - | chr3.1:8393925-8393944 | MS.gene49550:intron | 70.0% | |
| CAGTTCGAGCCCCTCGACCG+CGG | + | chr3.1:8393937-8393956 | None:intergenic | 70.0% | |
| GAGGAAGAGGCCGCGGTCGA+GGG | - | chr3.1:8393924-8393943 | MS.gene49550:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 8392449 | 8394316 | 8392449 | ID=MS.gene49550 |
| chr3.1 | mRNA | 8392449 | 8394316 | 8392449 | ID=MS.gene49550.t1;Parent=MS.gene49550 |
| chr3.1 | exon | 8394057 | 8394316 | 8394057 | ID=MS.gene49550.t1.exon1;Parent=MS.gene49550.t1 |
| chr3.1 | CDS | 8394057 | 8394316 | 8394057 | ID=cds.MS.gene49550.t1;Parent=MS.gene49550.t1 |
| chr3.1 | exon | 8393430 | 8393558 | 8393430 | ID=MS.gene49550.t1.exon2;Parent=MS.gene49550.t1 |
| chr3.1 | CDS | 8393430 | 8393558 | 8393430 | ID=cds.MS.gene49550.t1;Parent=MS.gene49550.t1 |
| chr3.1 | exon | 8393281 | 8393338 | 8393281 | ID=MS.gene49550.t1.exon3;Parent=MS.gene49550.t1 |
| chr3.1 | CDS | 8393281 | 8393338 | 8393281 | ID=cds.MS.gene49550.t1;Parent=MS.gene49550.t1 |
| chr3.1 | exon | 8392449 | 8392890 | 8392449 | ID=MS.gene49550.t1.exon4;Parent=MS.gene49550.t1 |
| chr3.1 | CDS | 8392449 | 8392890 | 8392449 | ID=cds.MS.gene49550.t1;Parent=MS.gene49550.t1 |
| Gene Sequence |
| Protein sequence |
