Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene49927.t1 | XP_013453041.1 | 100 | 191 | 0 | 0 | 1 | 191 | 1 | 191 | 7.80E-99 | 369.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene49927.t1 | Q9C514 | 81.2 | 191 | 36 | 0 | 1 | 191 | 1 | 191 | 5.5e-85 | 315.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene49927.t1 | B7FGT0 | 100.0 | 191 | 0 | 0 | 1 | 191 | 1 | 191 | 5.6e-99 | 369.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene05491 | MS.gene49927 | 0.974541 | 2.44E-138 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene49927 | MS.gene83444 | PPI |
MS.gene028153 | MS.gene49927 | PPI |
MS.gene49927 | MS.gene72768 | PPI |
MS.gene49927 | MS.gene82426 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene49927.t1 | MTR_6g085000 | 100.000 | 191 | 0 | 0 | 1 | 191 | 1 | 191 | 4.48e-139 | 385 |
MS.gene49927.t1 | MTR_6g021670 | 99.476 | 191 | 1 | 0 | 1 | 191 | 1 | 191 | 7.51e-139 | 385 |
MS.gene49927.t1 | MTR_8g087480 | 65.909 | 44 | 7 | 1 | 145 | 188 | 51 | 86 | 1.77e-12 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene49927.t1 | AT1G48830 | 81.152 | 191 | 36 | 0 | 1 | 191 | 1 | 191 | 2.55e-116 | 328 |
MS.gene49927.t1 | AT1G48830 | 81.152 | 191 | 36 | 0 | 1 | 191 | 1 | 191 | 2.55e-116 | 328 |
MS.gene49927.t1 | AT3G02560 | 80.628 | 191 | 37 | 0 | 1 | 191 | 1 | 191 | 8.53e-114 | 322 |
MS.gene49927.t1 | AT3G02560 | 80.628 | 191 | 37 | 0 | 1 | 191 | 1 | 191 | 8.53e-114 | 322 |
MS.gene49927.t1 | AT3G02560 | 80.628 | 191 | 37 | 0 | 1 | 191 | 1 | 191 | 8.53e-114 | 322 |
MS.gene49927.t1 | AT5G16130 | 81.383 | 188 | 35 | 0 | 1 | 188 | 1 | 188 | 2.24e-113 | 321 |
Find 51 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TACAGCCAAGTTGATGTTTC+TGG | 0.170905 | 6.4:+59095731 | MS.gene49927:intron |
TCAGTATTGTTTCTCTCCTT+TGG | 0.234939 | 6.4:-59096720 | None:intergenic |
CAGTATTGTTTCTCTCCTTT+GGG | 0.277926 | 6.4:-59096719 | None:intergenic |
AGAATCTAGGCCTCAGTAAC+AGG | 0.289126 | 6.4:-59096810 | None:intergenic |
ATAGTTTACCTTCATGATCT+TGG | 0.292174 | 6.4:-59096501 | None:intergenic |
AAATTCACGTCAGGCTCGTT+AGG | 0.322256 | 6.4:+59095810 | MS.gene49927:CDS |
GGATCCATCAATTCTGTATC+TGG | 0.328918 | 6.4:-59096480 | None:intergenic |
TGAGCAGCAGAGCCTTTCTT+TGG | 0.360132 | 6.4:-59096371 | None:intergenic |
CGTACCAGATACAGAATTGA+TGG | 0.382090 | 6.4:+59096476 | MS.gene49927:CDS |
GTTGCAGGCTCTGTTTGATC+TGG | 0.398358 | 6.4:+59095574 | MS.gene49927:intron |
TCGTGAAAATGTTTACTTCA+AGG | 0.415835 | 6.4:+59095395 | None:intergenic |
CGCTGAGCCTACTGAATTTG+AGG | 0.426295 | 6.4:+59095441 | MS.gene49927:CDS |
GCAGCAGAGCCTTTCTTTGG+TGG | 0.437765 | 6.4:-59096368 | None:intergenic |
ATTTGAGGAGTCAGTTGGAC+AGG | 0.472058 | 6.4:+59095456 | MS.gene49927:CDS |
TCCTCAATCTGTAGGGGACA+TGG | 0.482798 | 6.4:-59095775 | None:intergenic |
TGGTGGCCTGACGATTCTCC+TGG | 0.483590 | 6.4:-59096351 | None:intergenic |
GTTTCCGCAAAATTCACGTC+AGG | 0.487674 | 6.4:+59095801 | MS.gene49927:CDS |
GTTTGAGTACCCTGTTACTG+AGG | 0.503056 | 6.4:+59096800 | MS.gene49927:CDS |
CGTGGACAGCAGTGAGTGTA+CGG | 0.505350 | 6.4:-59096406 | None:intergenic |
TTCTGGCAACCGCAAGGCTG+TGG | 0.507229 | 6.4:+59095748 | MS.gene49927:CDS |
GTGTTGCCTGCTGAGATTGT+TGG | 0.507352 | 6.4:+59096449 | MS.gene49927:CDS |
ATCGTCAGGCCACCAAAGAA+AGG | 0.508890 | 6.4:+59096359 | MS.gene49927:CDS |
TTGCCACCAGGAGAATCGTC+AGG | 0.510117 | 6.4:+59096345 | MS.gene49927:CDS |
GAAGAAAATCAGCAAGGACA+AGG | 0.510615 | 6.4:+59095417 | MS.gene49927:CDS |
GAAACCCTTCCTCAATCTGT+AGG | 0.511555 | 6.4:-59095783 | None:intergenic |
TCCATGTCCCCTACAGATTG+AGG | 0.519730 | 6.4:+59095774 | MS.gene49927:CDS |
GCAGTTTACAGGAAACTCTC+AGG | 0.525392 | 6.4:+59096765 | MS.gene49927:CDS |
AAACCCTTCCTCAATCTGTA+GGG | 0.532886 | 6.4:-59095782 | None:intergenic |
AATTCACGTCAGGCTCGTTA+GGG | 0.538364 | 6.4:+59095811 | MS.gene49927:CDS |
ACTGAATTTGAGGAGTCAGT+TGG | 0.548538 | 6.4:+59095451 | MS.gene49927:CDS |
CGTTTGCCAACAATCTCAGC+AGG | 0.559003 | 6.4:-59096455 | None:intergenic |
TGTCCCCTACAGATTGAGGA+AGG | 0.573232 | 6.4:+59095778 | MS.gene49927:CDS |
ATGTAATCCTCATTGCCACC+AGG | 0.584954 | 6.4:+59096333 | MS.gene49927:CDS |
CGATTCTCCTGGTGGCAATG+AGG | 0.590532 | 6.4:-59096340 | None:intergenic |
AAGAAAATCAGCAAGGACAA+GGG | 0.599976 | 6.4:+59095418 | MS.gene49927:CDS |
TGATGTTTCTGGCAACCGCA+AGG | 0.602547 | 6.4:+59095742 | MS.gene49927:CDS |
GGTTGCCAGAAACATCAACT+TGG | 0.607356 | 6.4:-59095736 | None:intergenic |
TGAGAAGAAATTCAGCGGAA+AGG | 0.621961 | 6.4:+59095838 | MS.gene49927:CDS |
ACTGACTCCTCAAATTCAGT+AGG | 0.622702 | 6.4:-59095448 | None:intergenic |
TGATGGATCCAAGATCATGA+AGG | 0.639271 | 6.4:+59096493 | MS.gene49927:CDS |
GTCCCCTACAGATTGAGGAA+GGG | 0.640329 | 6.4:+59095779 | MS.gene49927:CDS |
AACCCTTCCTCAATCTGTAG+GGG | 0.640960 | 6.4:-59095781 | None:intergenic |
TGTCCACGAGGCAATGCTCG+AGG | 0.642990 | 6.4:+59096421 | MS.gene49927:CDS |
TTCAAGGAAGAAAATCAGCA+AGG | 0.648771 | 6.4:+59095411 | MS.gene49927:CDS |
GCAGTGAGTGTACGGCTGCG+TGG | 0.657285 | 6.4:-59096398 | None:intergenic |
TACACTCACTGCTGTCCACG+AGG | 0.659160 | 6.4:+59096409 | MS.gene49927:CDS |
TGGCCTGACGATTCTCCTGG+TGG | 0.662830 | 6.4:-59096348 | None:intergenic |
GAATCTAGGCCTCAGTAACA+GGG | 0.677360 | 6.4:-59096809 | None:intergenic |
CATCCTCGAGCATTGCCTCG+TGG | 0.690997 | 6.4:-59096424 | None:intergenic |
CATGGATAACCACAGCCTTG+CGG | 0.691240 | 6.4:-59095757 | None:intergenic |
GAGCTTGAGAAGAAATTCAG+CGG | 0.694607 | 6.4:+59095833 | MS.gene49927:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGAATAAGAAATAATGTTAA+TGG | + | chr6.4:59096660-59096679 | MS.gene49927:intron | 15.0% |
!! | ATTAGTATACAATAAAGTTA+AGG | - | chr6.4:59096295-59096314 | None:intergenic | 15.0% |
!! | AAATTGGAACAAAAAATTGT+CGG | - | chr6.4:59095935-59095954 | None:intergenic | 20.0% |
!! | AGAATAAAGTTCTTGAAATA+AGG | - | chr6.4:59095984-59096003 | None:intergenic | 20.0% |
!! | TTAAAGCAATTTAAAAACCA+AGG | - | chr6.4:59096019-59096038 | None:intergenic | 20.0% |
!!! | AGGTTATATATTGATTACTA+CGG | + | chr6.4:59095476-59095495 | MS.gene49927:intron | 20.0% |
!!! | ATTTTTTAAGGCTAATGTTA+TGG | - | chr6.4:59096246-59096265 | None:intergenic | 20.0% |
!!! | GATGTATTTGTTTTAAGTTT+TGG | - | chr6.4:59096566-59096585 | None:intergenic | 20.0% |
!!! | TGTGAGAAAACAATTTTTTA+AGG | - | chr6.4:59096258-59096277 | None:intergenic | 20.0% |
! | CTGTAAAACTGAAATTAATC+AGG | + | chr6.4:59096070-59096089 | MS.gene49927:intron | 25.0% |
! | TAATGTTAATGGAATTCTTG+TGG | + | chr6.4:59096671-59096690 | MS.gene49927:intron | 25.0% |
!!! | TTGTTTTAAGTTTTGGTTGA+TGG | - | chr6.4:59096559-59096578 | None:intergenic | 25.0% |
ACACAAAACAGGAAGTTATT+TGG | - | chr6.4:59096535-59096554 | None:intergenic | 30.0% | |
ATAGTTTACCTTCATGATCT+TGG | - | chr6.4:59096504-59096523 | None:intergenic | 30.0% | |
CAAATTCTTTAGTGTACGTT+TGG | - | chr6.4:59096217-59096236 | None:intergenic | 30.0% | |
GACAGAATCGTAATAAAAGA+TGG | - | chr6.4:59095910-59095929 | None:intergenic | 30.0% | |
GATTACATCCTACAAGTTAA+AGG | - | chr6.4:59096321-59096340 | None:intergenic | 30.0% | |
TTAGAAAGAATAACTGGCAA+AGG | - | chr6.4:59095882-59095901 | None:intergenic | 30.0% | |
! | AAACATTTTCTGCAGTTTAC+AGG | + | chr6.4:59096754-59096773 | MS.gene49927:CDS | 30.0% |
! | TCTGTGTATATAGGTGTTTT+TGG | + | chr6.4:59096695-59096714 | MS.gene49927:intron | 30.0% |
!! | CTAATGAACCTTTAACTTGT+AGG | + | chr6.4:59096310-59096329 | MS.gene49927:intron | 30.0% |
!! | GTTATTTTGCAAAATCACTC+TGG | + | chr6.4:59096588-59096607 | MS.gene49927:intron | 30.0% |
!!! | TGTTTTGAATTTGTTGTTGC+AGG | + | chr6.4:59095559-59095578 | MS.gene49927:intron | 30.0% |
AACTGAAATTAATCAGGCTG+CGG | + | chr6.4:59096076-59096095 | MS.gene49927:intron | 35.0% | |
AAGAAAATCAGCAAGGACAA+GGG | + | chr6.4:59095418-59095437 | MS.gene49927:CDS | 35.0% | |
CGAGTAGAAGACAAAGAAAT+TGG | - | chr6.4:59095951-59095970 | None:intergenic | 35.0% | |
GTCTAAGCATGTGTTTGATT+TGG | + | chr6.4:59096098-59096117 | MS.gene49927:intron | 35.0% | |
GTGCAGTTAGAAAGAATAAC+TGG | - | chr6.4:59095888-59095907 | None:intergenic | 35.0% | |
GTGTAAGGATGTGTTCTTTA+TGG | + | chr6.4:59095653-59095672 | MS.gene49927:intron | 35.0% | |
TACATCAATTCTGCAGTGTA+AGG | + | chr6.4:59095638-59095657 | MS.gene49927:intron | 35.0% | |
TCTTTAGTGTACGTTTGGTT+TGG | - | chr6.4:59096212-59096231 | None:intergenic | 35.0% | |
TTCAAGGAAGAAAATCAGCA+AGG | + | chr6.4:59095411-59095430 | MS.gene49927:CDS | 35.0% | |
! | ATTCTGTTTTGCATTCTCCT+TGG | + | chr6.4:59095999-59096018 | MS.gene49927:intron | 35.0% |
! | CAGTATTGTTTCTCTCCTTT+GGG | - | chr6.4:59096722-59096741 | None:intergenic | 35.0% |
! | TCAGTATTGTTTCTCTCCTT+TGG | - | chr6.4:59096723-59096742 | None:intergenic | 35.0% |
! | TCTTGTGGTTCTGTGTATAT+AGG | + | chr6.4:59096686-59096705 | MS.gene49927:intron | 35.0% |
AAACCCTTCCTCAATCTGTA+GGG | - | chr6.4:59095785-59095804 | None:intergenic | 40.0% | |
ACTGAATTTGAGGAGTCAGT+TGG | + | chr6.4:59095451-59095470 | MS.gene49927:CDS | 40.0% | |
CGTACCAGATACAGAATTGA+TGG | + | chr6.4:59096476-59096495 | MS.gene49927:CDS | 40.0% | |
GAAGAAAATCAGCAAGGACA+AGG | + | chr6.4:59095417-59095436 | MS.gene49927:CDS | 40.0% | |
GAGCTTGAGAAGAAATTCAG+CGG | + | chr6.4:59095833-59095852 | MS.gene49927:CDS | 40.0% | |
GGATCCATCAATTCTGTATC+TGG | - | chr6.4:59096483-59096502 | None:intergenic | 40.0% | |
TGAGAAGAAATTCAGCGGAA+AGG | + | chr6.4:59095838-59095857 | MS.gene49927:CDS | 40.0% | |
! | ACTGACTCCTCAAATTCAGT+AGG | - | chr6.4:59095451-59095470 | None:intergenic | 40.0% |
! | TGATGGATCCAAGATCATGA+AGG | + | chr6.4:59096493-59096512 | MS.gene49927:CDS | 40.0% |
!! | TACAGCCAAGTTGATGTTTC+TGG | + | chr6.4:59095731-59095750 | MS.gene49927:intron | 40.0% |
!! | TGGTTGATGGAACACAAAAC+AGG | - | chr6.4:59096546-59096565 | None:intergenic | 40.0% |
!!! | ATAGGTGTTTTTGGACCCAA+AGG | + | chr6.4:59096704-59096723 | MS.gene49927:intron | 40.0% |
AAATTCACGTCAGGCTCGTT+AGG | + | chr6.4:59095810-59095829 | MS.gene49927:CDS | 45.0% | |
AACCCTTCCTCAATCTGTAG+GGG | - | chr6.4:59095784-59095803 | None:intergenic | 45.0% | |
AATTCACGTCAGGCTCGTTA+GGG | + | chr6.4:59095811-59095830 | MS.gene49927:CDS | 45.0% | |
ATGCATGCCTTGTAATCGTG+TGG | + | chr6.4:59096169-59096188 | MS.gene49927:intron | 45.0% | |
ATGTAATCCTCATTGCCACC+AGG | + | chr6.4:59096333-59096352 | MS.gene49927:CDS | 45.0% | |
ATTTGAGGAGTCAGTTGGAC+AGG | + | chr6.4:59095456-59095475 | MS.gene49927:CDS | 45.0% | |
GAAACCCTTCCTCAATCTGT+AGG | - | chr6.4:59095786-59095805 | None:intergenic | 45.0% | |
GCAGTTTACAGGAAACTCTC+AGG | + | chr6.4:59096765-59096784 | MS.gene49927:CDS | 45.0% | |
GGTTGCCAGAAACATCAACT+TGG | - | chr6.4:59095739-59095758 | None:intergenic | 45.0% | |
GTTTCCGCAAAATTCACGTC+AGG | + | chr6.4:59095801-59095820 | MS.gene49927:CDS | 45.0% | |
GTTTGAGTACCCTGTTACTG+AGG | + | chr6.4:59096800-59096819 | MS.gene49927:CDS | 45.0% | |
TGCATGCCTTGTAATCGTGT+GGG | + | chr6.4:59096170-59096189 | MS.gene49927:intron | 45.0% | |
! | ACGGACTATTGTTGTTGCTG+TGG | + | chr6.4:59095495-59095514 | MS.gene49927:intron | 45.0% |
!! | TCAGCTCACTTTTGAGCTCA+TGG | - | chr6.4:59095610-59095629 | None:intergenic | 45.0% |
ATCGTCAGGCCACCAAAGAA+AGG | + | chr6.4:59096359-59096378 | MS.gene49927:CDS | 50.0% | |
CATGGATAACCACAGCCTTG+CGG | - | chr6.4:59095760-59095779 | None:intergenic | 50.0% | |
CGCTGAGCCTACTGAATTTG+AGG | + | chr6.4:59095441-59095460 | MS.gene49927:CDS | 50.0% | |
CGTTTGCCAACAATCTCAGC+AGG | - | chr6.4:59096458-59096477 | None:intergenic | 50.0% | |
CTGCAACCCACACGATTACA+AGG | - | chr6.4:59096179-59096198 | None:intergenic | 50.0% | |
GTCCCCTACAGATTGAGGAA+GGG | + | chr6.4:59095779-59095798 | MS.gene49927:CDS | 50.0% | |
GTGTTGCCTGCTGAGATTGT+TGG | + | chr6.4:59096449-59096468 | MS.gene49927:CDS | 50.0% | |
GTTGCAGGCTCTGTTTGATC+TGG | + | chr6.4:59095574-59095593 | MS.gene49927:intron | 50.0% | |
TCCATGTCCCCTACAGATTG+AGG | + | chr6.4:59095774-59095793 | MS.gene49927:CDS | 50.0% | |
TCCTCAATCTGTAGGGGACA+TGG | - | chr6.4:59095778-59095797 | None:intergenic | 50.0% | |
TGAGCAGCAGAGCCTTTCTT+TGG | - | chr6.4:59096374-59096393 | None:intergenic | 50.0% | |
TGTCCCCTACAGATTGAGGA+AGG | + | chr6.4:59095778-59095797 | MS.gene49927:CDS | 50.0% | |
! | CGAGCCTGACGTGAATTTTG+CGG | - | chr6.4:59095808-59095827 | None:intergenic | 50.0% |
!! | TGATGTTTCTGGCAACCGCA+AGG | + | chr6.4:59095742-59095761 | MS.gene49927:CDS | 50.0% |
CGATTCTCCTGGTGGCAATG+AGG | - | chr6.4:59096343-59096362 | None:intergenic | 55.0% | |
CGTGGACAGCAGTGAGTGTA+CGG | - | chr6.4:59096409-59096428 | None:intergenic | 55.0% | |
GCAGCAGAGCCTTTCTTTGG+TGG | - | chr6.4:59096371-59096390 | None:intergenic | 55.0% | |
TACACTCACTGCTGTCCACG+AGG | + | chr6.4:59096409-59096428 | MS.gene49927:CDS | 55.0% | |
TTGCCACCAGGAGAATCGTC+AGG | + | chr6.4:59096345-59096364 | MS.gene49927:CDS | 55.0% | |
TGGCCTGACGATTCTCCTGG+TGG | - | chr6.4:59096351-59096370 | None:intergenic | 60.0% | |
TGGTGGCCTGACGATTCTCC+TGG | - | chr6.4:59096354-59096373 | None:intergenic | 60.0% | |
TGTCCACGAGGCAATGCTCG+AGG | + | chr6.4:59096421-59096440 | MS.gene49927:CDS | 60.0% | |
TTCTGGCAACCGCAAGGCTG+TGG | + | chr6.4:59095748-59095767 | MS.gene49927:CDS | 60.0% | |
! | CATCCTCGAGCATTGCCTCG+TGG | - | chr6.4:59096427-59096446 | None:intergenic | 60.0% |
GCAGTGAGTGTACGGCTGCG+TGG | - | chr6.4:59096401-59096420 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.4 | gene | 59095403 | 59096827 | 59095403 | ID=MS.gene49927 |
chr6.4 | mRNA | 59095403 | 59096827 | 59095403 | ID=MS.gene49927.t1;Parent=MS.gene49927 |
chr6.4 | exon | 59095403 | 59095477 | 59095403 | ID=MS.gene49927.t1.exon1;Parent=MS.gene49927.t1 |
chr6.4 | CDS | 59095403 | 59095477 | 59095403 | ID=cds.MS.gene49927.t1;Parent=MS.gene49927.t1 |
chr6.4 | exon | 59095581 | 59095654 | 59095581 | ID=MS.gene49927.t1.exon2;Parent=MS.gene49927.t1 |
chr6.4 | CDS | 59095581 | 59095654 | 59095581 | ID=cds.MS.gene49927.t1;Parent=MS.gene49927.t1 |
chr6.4 | exon | 59095736 | 59095859 | 59095736 | ID=MS.gene49927.t1.exon3;Parent=MS.gene49927.t1 |
chr6.4 | CDS | 59095736 | 59095859 | 59095736 | ID=cds.MS.gene49927.t1;Parent=MS.gene49927.t1 |
chr6.4 | exon | 59096332 | 59096514 | 59096332 | ID=MS.gene49927.t1.exon4;Parent=MS.gene49927.t1 |
chr6.4 | CDS | 59096332 | 59096514 | 59096332 | ID=cds.MS.gene49927.t1;Parent=MS.gene49927.t1 |
chr6.4 | exon | 59096708 | 59096827 | 59096708 | ID=MS.gene49927.t1.exon5;Parent=MS.gene49927.t1 |
chr6.4 | CDS | 59096708 | 59096827 | 59096708 | ID=cds.MS.gene49927.t1;Parent=MS.gene49927.t1 |
Gene Sequence |
Protein sequence |