Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82426.t1 | XP_003612524.2 | 91.1 | 448 | 25 | 2 | 1 | 433 | 1 | 448 | 2.90E-226 | 794.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82426.t1 | Q13895 | 44.7 | 407 | 203 | 3 | 36 | 433 | 44 | 437 | 4.4e-90 | 333.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82426.t1 | G7K5D2 | 91.1 | 448 | 25 | 2 | 1 | 433 | 1 | 448 | 2.1e-226 | 794.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82426.t1 | MTR_5g025980 | 93.080 | 448 | 16 | 2 | 1 | 433 | 1 | 448 | 0.0 | 853 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82426.t1 | AT1G31660 | 57.623 | 446 | 174 | 5 | 1 | 433 | 1 | 444 | 5.05e-168 | 479 |
Find 95 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAACCTGCTGCTTTCTTTA+AGG | 0.071782 | 5.2:-16708786 | MS.gene82426:CDS |
| CAATCAACTCGCCTTCTTTC+TGG | 0.148077 | 5.2:+16711293 | None:intergenic |
| ACATCCCCTCAATGCAAAAT+TGG | 0.202176 | 5.2:-16709012 | MS.gene82426:CDS |
| TCTAGCTCTCTACTTATTTC+AGG | 0.208501 | 5.2:+16704583 | None:intergenic |
| TTTATACCAAACACTGAAAA+AGG | 0.221473 | 5.2:-16708816 | MS.gene82426:CDS |
| CCTTCTTTCTGGTGGCGTTT+TGG | 0.227594 | 5.2:+16711304 | None:intergenic |
| TGGAGCTTTGGAGGATTTCT+TGG | 0.233138 | 5.2:+16711324 | None:intergenic |
| TATTGGCATTATTCAATTCT+AGG | 0.241418 | 5.2:-16709424 | MS.gene82426:CDS |
| GGAAAATTTAAAGCTTCTTC+TGG | 0.244153 | 5.2:-16704711 | MS.gene82426:CDS |
| GGAAAAGCAAAATCATTTCT+TGG | 0.279075 | 5.2:-16704690 | MS.gene82426:intron |
| TTTGGAGGATTTCTTGGATT+TGG | 0.308529 | 5.2:+16711330 | None:intergenic |
| AAACCTGCTGCTTTCTTTAA+GGG | 0.310046 | 5.2:-16708785 | MS.gene82426:CDS |
| TCCAATTCCATTGGTACATC+TGG | 0.314698 | 5.2:+16703743 | None:intergenic |
| CTAGGACAATGCCTGTTATA+TGG | 0.320912 | 5.2:-16705749 | MS.gene82426:CDS |
| GAATCCACCAGTGCCTAAAA+TGG | 0.324933 | 5.2:-16709263 | MS.gene82426:CDS |
| CACACCGCGAAATGAACTTC+TGG | 0.363792 | 5.2:+16711186 | None:intergenic |
| CCGTCTGGAATGAAGGGTTC+GGG | 0.368334 | 5.2:+16711364 | None:intergenic |
| TCCAGATGTACCAATGGAAT+TGG | 0.374340 | 5.2:-16703744 | MS.gene82426:CDS |
| GTGGCTTGAAACAAAGCATT+TGG | 0.377398 | 5.2:+16708950 | None:intergenic |
| AGTGATTGGTGCCATATAAC+AGG | 0.387926 | 5.2:+16705738 | None:intergenic |
| GGGATGTGTTTAAATGCCTT+GGG | 0.397959 | 5.2:+16709028 | None:intergenic |
| GCCGTCTGGAATGAAGGGTT+CGG | 0.399114 | 5.2:+16711363 | None:intergenic |
| CTCAGAGAAGCAGTCATTGT+TGG | 0.399980 | 5.2:-16707669 | MS.gene82426:CDS |
| GTTGCACTATTGAAGCTTGC+TGG | 0.400448 | 5.2:-16706987 | MS.gene82426:CDS |
| TCAAGTTAACATACCTTGAA+TGG | 0.408307 | 5.2:+16707613 | None:intergenic |
| GGGGATGTGTTTAAATGCCT+TGG | 0.424695 | 5.2:+16709027 | None:intergenic |
| CTATTCCTCCACTCCATTCA+AGG | 0.426326 | 5.2:-16707626 | MS.gene82426:intron |
| TTTATATCATCTCTCACTCT+TGG | 0.427328 | 5.2:+16708863 | None:intergenic |
| GCTCCCAATGTTCCCATTGT+TGG | 0.441269 | 5.2:-16711157 | MS.gene82426:CDS |
| TTCAGTGCCGTCTGGAATGA+AGG | 0.443676 | 5.2:+16711357 | None:intergenic |
| TCCGGAGGATGAGAGAATAT+TGG | 0.445643 | 5.2:-16709441 | MS.gene82426:CDS |
| TTGGCGTATTCAGTGCCGTC+TGG | 0.449606 | 5.2:+16711349 | None:intergenic |
| CTTCTTAGCAGATATACAAT+AGG | 0.450738 | 5.2:-16709058 | MS.gene82426:CDS |
| TGGTGTCTGTAAGTGTTATC+TGG | 0.451266 | 5.2:+16709390 | None:intergenic |
| CATCCCCTCAATGCAAAATT+GGG | 0.453102 | 5.2:-16709011 | MS.gene82426:CDS |
| CTTTCGTATTGCAGGGTTGG+AGG | 0.455905 | 5.2:-16709082 | MS.gene82426:intron |
| ATATTATTACCTGTAGCAAC+AGG | 0.456264 | 5.2:+16709347 | None:intergenic |
| ATTATTCAATTCTAGGGACT+CGG | 0.463324 | 5.2:-16709417 | MS.gene82426:CDS |
| TTCATTTCGCGGTGTGGAAG+AGG | 0.466624 | 5.2:-16711179 | MS.gene82426:CDS |
| ACCATTGTTAAAAGATTAGC+AGG | 0.469557 | 5.2:-16709371 | MS.gene82426:CDS |
| ATTGGCATTATTCAATTCTA+GGG | 0.470535 | 5.2:-16709423 | MS.gene82426:CDS |
| GCCAATATTCTCTCATCCTC+CGG | 0.471037 | 5.2:+16709440 | None:intergenic |
| TCACCAACAATGGGAACATT+GGG | 0.474481 | 5.2:+16711154 | None:intergenic |
| CACTTCTTGCATTTGTGCAG+AGG | 0.485206 | 5.2:-16705719 | MS.gene82426:intron |
| CTCACCAACAATGGGAACAT+TGG | 0.486985 | 5.2:+16711153 | None:intergenic |
| GTTGGTGAGGATGATGTTGA+TGG | 0.489163 | 5.2:-16711139 | MS.gene82426:CDS |
| ATAAATTAGTCCAATTCCAT+TGG | 0.495060 | 5.2:+16703734 | None:intergenic |
| GAAAATCAAAGCCATGTTGA+TGG | 0.495372 | 5.2:-16711088 | MS.gene82426:CDS |
| TGAAGAGGAAGATGAAGCTG+AGG | 0.496264 | 5.2:-16711215 | MS.gene82426:CDS |
| ATTCCCTTAAAGAAAGCAGC+AGG | 0.502170 | 5.2:+16708782 | None:intergenic |
| CCAAAACGCCACCAGAAAGA+AGG | 0.502367 | 5.2:-16711304 | MS.gene82426:CDS |
| ACATCATCCTCACCAACAAT+GGG | 0.511719 | 5.2:+16711145 | None:intergenic |
| AACATCATCCTCACCAACAA+TGG | 0.514016 | 5.2:+16711144 | None:intergenic |
| TTGCACTATTGAAGCTTGCT+GGG | 0.515142 | 5.2:-16706986 | MS.gene82426:CDS |
| TTAGCAGGACCTGTTGCTAC+AGG | 0.519390 | 5.2:-16709356 | MS.gene82426:intron |
| TATCAGTTCAAAGATTATCA+AGG | 0.521679 | 5.2:-16711263 | MS.gene82426:CDS |
| TGAGATTTGAAAATGATACT+AGG | 0.522794 | 5.2:-16705767 | MS.gene82426:CDS |
| ACTATTGAAGCTTGCTGGGA+TGG | 0.524744 | 5.2:-16706982 | MS.gene82426:CDS |
| TGAACTGCAGAAGGAAGATA+AGG | 0.526034 | 5.2:-16704732 | MS.gene82426:CDS |
| ACTGCATCAACCACACGATA+CGG | 0.534526 | 5.2:+16705804 | None:intergenic |
| GCACAAATGCAAGAAGTGAT+TGG | 0.534650 | 5.2:+16705724 | None:intergenic |
| GTCACCAGAAGTTCATTTCG+CGG | 0.547239 | 5.2:-16711190 | MS.gene82426:CDS |
| ATCAATGGCGAAGAAGAGAA+AGG | 0.553195 | 5.2:-16711401 | None:intergenic |
| CAGAAGTTCATTTCGCGGTG+TGG | 0.561415 | 5.2:-16711185 | MS.gene82426:CDS |
| ATCTTACTGAACCTGAAAAG+TGG | 0.562405 | 5.2:-16708976 | MS.gene82426:CDS |
| TTATTCAATTCTAGGGACTC+GGG | 0.566076 | 5.2:-16709416 | MS.gene82426:CDS |
| TGATTATGTACCTCACATAG+TGG | 0.567184 | 5.2:+16708752 | None:intergenic |
| TCAACTCGCCTTCTTTCTGG+TGG | 0.567972 | 5.2:+16711296 | None:intergenic |
| CAATGTTCCCATTGTTGGTG+AGG | 0.571746 | 5.2:-16711152 | MS.gene82426:CDS |
| CTCAATGCAAAATTGGGAGG+AGG | 0.572422 | 5.2:-16709005 | MS.gene82426:CDS |
| TTTCACCTCGGTTACGACTG+TGG | 0.577449 | 5.2:+16704560 | None:intergenic |
| ATGCTTTGTTTCAAGCCACT+AGG | 0.580166 | 5.2:-16708946 | MS.gene82426:CDS |
| TGAAATTCAGGATATTACTC+CGG | 0.594239 | 5.2:-16709459 | MS.gene82426:intron |
| TCAACTCAGAGAGGTTGAAG+AGG | 0.595200 | 5.2:-16711230 | MS.gene82426:CDS |
| TGGATTATTGTGGCACAACA+AGG | 0.596993 | 5.2:-16706962 | MS.gene82426:intron |
| CCCGAACCCTTCATTCCAGA+CGG | 0.597498 | 5.2:-16711364 | MS.gene82426:CDS |
| TCAGTGCCGTCTGGAATGAA+GGG | 0.614244 | 5.2:+16711358 | None:intergenic |
| AATATTGTTTCCACTATGTG+AGG | 0.615813 | 5.2:-16708762 | MS.gene82426:intron |
| AAAATACTTGACATATACAA+GGG | 0.619470 | 5.2:-16709235 | MS.gene82426:CDS |
| ATAAAGCAAAATGCAGCCGT+TGG | 0.620040 | 5.2:+16708834 | None:intergenic |
| CAGGAACTTCACCATCAACA+TGG | 0.623265 | 5.2:+16711077 | None:intergenic |
| TTAACATACCTTGAATGGAG+TGG | 0.627262 | 5.2:+16707618 | None:intergenic |
| CGACATTCCAGATGTACCAA+TGG | 0.627346 | 5.2:-16703750 | MS.gene82426:CDS |
| CGTCTGGAATGAAGGGTTCG+GGG | 0.631149 | 5.2:+16711365 | None:intergenic |
| TACAATAGGCAAAATCCCCA+AGG | 0.632126 | 5.2:-16709044 | MS.gene82426:CDS |
| CCCCTCAATGCAAAATTGGG+AGG | 0.632144 | 5.2:-16709008 | MS.gene82426:CDS |
| GGATGTGTTTAAATGCCTTG+GGG | 0.640141 | 5.2:+16709029 | None:intergenic |
| ACATACCTTGAATGGAGTGG+AGG | 0.640405 | 5.2:+16707621 | None:intergenic |
| AATTCAGGATATTACTCCGG+AGG | 0.641238 | 5.2:-16709456 | MS.gene82426:intron |
| CTTGCTGGGATGGATTATTG+TGG | 0.644659 | 5.2:-16706972 | MS.gene82426:CDS |
| TTCAATTCTAGGGACTCGGG+TGG | 0.664674 | 5.2:-16709413 | MS.gene82426:CDS |
| AAATACTTGACATATACAAG+GGG | 0.670626 | 5.2:-16709234 | MS.gene82426:intron |
| AGCTAAGCTTCAACTCAGAG+AGG | 0.674875 | 5.2:-16711239 | MS.gene82426:CDS |
| ATATGCTTTGCCGTATCGTG+TGG | 0.675148 | 5.2:-16705814 | MS.gene82426:CDS |
| CTAGACCACAGTCGTAACCG+AGG | 0.711855 | 5.2:-16704565 | MS.gene82426:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 16703739 | 16711419 | 16703739 | ID=MS.gene82426 |
| chr5.2 | mRNA | 16703739 | 16711419 | 16703739 | ID=MS.gene82426.t1;Parent=MS.gene82426 |
| chr5.2 | exon | 16711078 | 16711419 | 16711078 | ID=MS.gene82426.t1.exon1;Parent=MS.gene82426.t1 |
| chr5.2 | CDS | 16711078 | 16711419 | 16711078 | ID=cds.MS.gene82426.t1;Parent=MS.gene82426.t1 |
| chr5.2 | exon | 16709357 | 16709471 | 16709357 | ID=MS.gene82426.t1.exon2;Parent=MS.gene82426.t1 |
| chr5.2 | CDS | 16709357 | 16709471 | 16709357 | ID=cds.MS.gene82426.t1;Parent=MS.gene82426.t1 |
| chr5.2 | exon | 16709235 | 16709286 | 16709235 | ID=MS.gene82426.t1.exon3;Parent=MS.gene82426.t1 |
| chr5.2 | CDS | 16709235 | 16709286 | 16709235 | ID=cds.MS.gene82426.t1;Parent=MS.gene82426.t1 |
| chr5.2 | exon | 16708763 | 16709090 | 16708763 | ID=MS.gene82426.t1.exon4;Parent=MS.gene82426.t1 |
| chr5.2 | CDS | 16708763 | 16709090 | 16708763 | ID=cds.MS.gene82426.t1;Parent=MS.gene82426.t1 |
| chr5.2 | exon | 16707627 | 16707706 | 16707627 | ID=MS.gene82426.t1.exon5;Parent=MS.gene82426.t1 |
| chr5.2 | CDS | 16707627 | 16707706 | 16707627 | ID=cds.MS.gene82426.t1;Parent=MS.gene82426.t1 |
| chr5.2 | exon | 16706963 | 16707010 | 16706963 | ID=MS.gene82426.t1.exon6;Parent=MS.gene82426.t1 |
| chr5.2 | CDS | 16706963 | 16707010 | 16706963 | ID=cds.MS.gene82426.t1;Parent=MS.gene82426.t1 |
| chr5.2 | exon | 16705720 | 16705866 | 16705720 | ID=MS.gene82426.t1.exon7;Parent=MS.gene82426.t1 |
| chr5.2 | CDS | 16705720 | 16705866 | 16705720 | ID=cds.MS.gene82426.t1;Parent=MS.gene82426.t1 |
| chr5.2 | exon | 16704691 | 16704763 | 16704691 | ID=MS.gene82426.t1.exon8;Parent=MS.gene82426.t1 |
| chr5.2 | CDS | 16704691 | 16704763 | 16704691 | ID=cds.MS.gene82426.t1;Parent=MS.gene82426.t1 |
| chr5.2 | exon | 16704566 | 16704611 | 16704566 | ID=MS.gene82426.t1.exon9;Parent=MS.gene82426.t1 |
| chr5.2 | CDS | 16704566 | 16704611 | 16704566 | ID=cds.MS.gene82426.t1;Parent=MS.gene82426.t1 |
| chr5.2 | exon | 16703739 | 16703809 | 16703739 | ID=MS.gene82426.t1.exon10;Parent=MS.gene82426.t1 |
| chr5.2 | CDS | 16703739 | 16703809 | 16703739 | ID=cds.MS.gene82426.t1;Parent=MS.gene82426.t1 |
| Gene Sequence |
| Protein sequence |