Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82426.t1 | XP_003612524.2 | 91.1 | 448 | 25 | 2 | 1 | 433 | 1 | 448 | 2.90E-226 | 794.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82426.t1 | Q13895 | 44.7 | 407 | 203 | 3 | 36 | 433 | 44 | 437 | 4.4e-90 | 333.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82426.t1 | G7K5D2 | 91.1 | 448 | 25 | 2 | 1 | 433 | 1 | 448 | 2.1e-226 | 794.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82426.t1 | MTR_5g025980 | 93.080 | 448 | 16 | 2 | 1 | 433 | 1 | 448 | 0.0 | 853 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82426.t1 | AT1G31660 | 57.623 | 446 | 174 | 5 | 1 | 433 | 1 | 444 | 5.05e-168 | 479 |
Find 95 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAAACCTGCTGCTTTCTTTA+AGG | 0.071782 | 5.2:-16708786 | MS.gene82426:CDS |
CAATCAACTCGCCTTCTTTC+TGG | 0.148077 | 5.2:+16711293 | None:intergenic |
ACATCCCCTCAATGCAAAAT+TGG | 0.202176 | 5.2:-16709012 | MS.gene82426:CDS |
TCTAGCTCTCTACTTATTTC+AGG | 0.208501 | 5.2:+16704583 | None:intergenic |
TTTATACCAAACACTGAAAA+AGG | 0.221473 | 5.2:-16708816 | MS.gene82426:CDS |
CCTTCTTTCTGGTGGCGTTT+TGG | 0.227594 | 5.2:+16711304 | None:intergenic |
TGGAGCTTTGGAGGATTTCT+TGG | 0.233138 | 5.2:+16711324 | None:intergenic |
TATTGGCATTATTCAATTCT+AGG | 0.241418 | 5.2:-16709424 | MS.gene82426:CDS |
GGAAAATTTAAAGCTTCTTC+TGG | 0.244153 | 5.2:-16704711 | MS.gene82426:CDS |
GGAAAAGCAAAATCATTTCT+TGG | 0.279075 | 5.2:-16704690 | MS.gene82426:intron |
TTTGGAGGATTTCTTGGATT+TGG | 0.308529 | 5.2:+16711330 | None:intergenic |
AAACCTGCTGCTTTCTTTAA+GGG | 0.310046 | 5.2:-16708785 | MS.gene82426:CDS |
TCCAATTCCATTGGTACATC+TGG | 0.314698 | 5.2:+16703743 | None:intergenic |
CTAGGACAATGCCTGTTATA+TGG | 0.320912 | 5.2:-16705749 | MS.gene82426:CDS |
GAATCCACCAGTGCCTAAAA+TGG | 0.324933 | 5.2:-16709263 | MS.gene82426:CDS |
CACACCGCGAAATGAACTTC+TGG | 0.363792 | 5.2:+16711186 | None:intergenic |
CCGTCTGGAATGAAGGGTTC+GGG | 0.368334 | 5.2:+16711364 | None:intergenic |
TCCAGATGTACCAATGGAAT+TGG | 0.374340 | 5.2:-16703744 | MS.gene82426:CDS |
GTGGCTTGAAACAAAGCATT+TGG | 0.377398 | 5.2:+16708950 | None:intergenic |
AGTGATTGGTGCCATATAAC+AGG | 0.387926 | 5.2:+16705738 | None:intergenic |
GGGATGTGTTTAAATGCCTT+GGG | 0.397959 | 5.2:+16709028 | None:intergenic |
GCCGTCTGGAATGAAGGGTT+CGG | 0.399114 | 5.2:+16711363 | None:intergenic |
CTCAGAGAAGCAGTCATTGT+TGG | 0.399980 | 5.2:-16707669 | MS.gene82426:CDS |
GTTGCACTATTGAAGCTTGC+TGG | 0.400448 | 5.2:-16706987 | MS.gene82426:CDS |
TCAAGTTAACATACCTTGAA+TGG | 0.408307 | 5.2:+16707613 | None:intergenic |
GGGGATGTGTTTAAATGCCT+TGG | 0.424695 | 5.2:+16709027 | None:intergenic |
CTATTCCTCCACTCCATTCA+AGG | 0.426326 | 5.2:-16707626 | MS.gene82426:intron |
TTTATATCATCTCTCACTCT+TGG | 0.427328 | 5.2:+16708863 | None:intergenic |
GCTCCCAATGTTCCCATTGT+TGG | 0.441269 | 5.2:-16711157 | MS.gene82426:CDS |
TTCAGTGCCGTCTGGAATGA+AGG | 0.443676 | 5.2:+16711357 | None:intergenic |
TCCGGAGGATGAGAGAATAT+TGG | 0.445643 | 5.2:-16709441 | MS.gene82426:CDS |
TTGGCGTATTCAGTGCCGTC+TGG | 0.449606 | 5.2:+16711349 | None:intergenic |
CTTCTTAGCAGATATACAAT+AGG | 0.450738 | 5.2:-16709058 | MS.gene82426:CDS |
TGGTGTCTGTAAGTGTTATC+TGG | 0.451266 | 5.2:+16709390 | None:intergenic |
CATCCCCTCAATGCAAAATT+GGG | 0.453102 | 5.2:-16709011 | MS.gene82426:CDS |
CTTTCGTATTGCAGGGTTGG+AGG | 0.455905 | 5.2:-16709082 | MS.gene82426:intron |
ATATTATTACCTGTAGCAAC+AGG | 0.456264 | 5.2:+16709347 | None:intergenic |
ATTATTCAATTCTAGGGACT+CGG | 0.463324 | 5.2:-16709417 | MS.gene82426:CDS |
TTCATTTCGCGGTGTGGAAG+AGG | 0.466624 | 5.2:-16711179 | MS.gene82426:CDS |
ACCATTGTTAAAAGATTAGC+AGG | 0.469557 | 5.2:-16709371 | MS.gene82426:CDS |
ATTGGCATTATTCAATTCTA+GGG | 0.470535 | 5.2:-16709423 | MS.gene82426:CDS |
GCCAATATTCTCTCATCCTC+CGG | 0.471037 | 5.2:+16709440 | None:intergenic |
TCACCAACAATGGGAACATT+GGG | 0.474481 | 5.2:+16711154 | None:intergenic |
CACTTCTTGCATTTGTGCAG+AGG | 0.485206 | 5.2:-16705719 | MS.gene82426:intron |
CTCACCAACAATGGGAACAT+TGG | 0.486985 | 5.2:+16711153 | None:intergenic |
GTTGGTGAGGATGATGTTGA+TGG | 0.489163 | 5.2:-16711139 | MS.gene82426:CDS |
ATAAATTAGTCCAATTCCAT+TGG | 0.495060 | 5.2:+16703734 | None:intergenic |
GAAAATCAAAGCCATGTTGA+TGG | 0.495372 | 5.2:-16711088 | MS.gene82426:CDS |
TGAAGAGGAAGATGAAGCTG+AGG | 0.496264 | 5.2:-16711215 | MS.gene82426:CDS |
ATTCCCTTAAAGAAAGCAGC+AGG | 0.502170 | 5.2:+16708782 | None:intergenic |
CCAAAACGCCACCAGAAAGA+AGG | 0.502367 | 5.2:-16711304 | MS.gene82426:CDS |
ACATCATCCTCACCAACAAT+GGG | 0.511719 | 5.2:+16711145 | None:intergenic |
AACATCATCCTCACCAACAA+TGG | 0.514016 | 5.2:+16711144 | None:intergenic |
TTGCACTATTGAAGCTTGCT+GGG | 0.515142 | 5.2:-16706986 | MS.gene82426:CDS |
TTAGCAGGACCTGTTGCTAC+AGG | 0.519390 | 5.2:-16709356 | MS.gene82426:intron |
TATCAGTTCAAAGATTATCA+AGG | 0.521679 | 5.2:-16711263 | MS.gene82426:CDS |
TGAGATTTGAAAATGATACT+AGG | 0.522794 | 5.2:-16705767 | MS.gene82426:CDS |
ACTATTGAAGCTTGCTGGGA+TGG | 0.524744 | 5.2:-16706982 | MS.gene82426:CDS |
TGAACTGCAGAAGGAAGATA+AGG | 0.526034 | 5.2:-16704732 | MS.gene82426:CDS |
ACTGCATCAACCACACGATA+CGG | 0.534526 | 5.2:+16705804 | None:intergenic |
GCACAAATGCAAGAAGTGAT+TGG | 0.534650 | 5.2:+16705724 | None:intergenic |
GTCACCAGAAGTTCATTTCG+CGG | 0.547239 | 5.2:-16711190 | MS.gene82426:CDS |
ATCAATGGCGAAGAAGAGAA+AGG | 0.553195 | 5.2:-16711401 | None:intergenic |
CAGAAGTTCATTTCGCGGTG+TGG | 0.561415 | 5.2:-16711185 | MS.gene82426:CDS |
ATCTTACTGAACCTGAAAAG+TGG | 0.562405 | 5.2:-16708976 | MS.gene82426:CDS |
TTATTCAATTCTAGGGACTC+GGG | 0.566076 | 5.2:-16709416 | MS.gene82426:CDS |
TGATTATGTACCTCACATAG+TGG | 0.567184 | 5.2:+16708752 | None:intergenic |
TCAACTCGCCTTCTTTCTGG+TGG | 0.567972 | 5.2:+16711296 | None:intergenic |
CAATGTTCCCATTGTTGGTG+AGG | 0.571746 | 5.2:-16711152 | MS.gene82426:CDS |
CTCAATGCAAAATTGGGAGG+AGG | 0.572422 | 5.2:-16709005 | MS.gene82426:CDS |
TTTCACCTCGGTTACGACTG+TGG | 0.577449 | 5.2:+16704560 | None:intergenic |
ATGCTTTGTTTCAAGCCACT+AGG | 0.580166 | 5.2:-16708946 | MS.gene82426:CDS |
TGAAATTCAGGATATTACTC+CGG | 0.594239 | 5.2:-16709459 | MS.gene82426:intron |
TCAACTCAGAGAGGTTGAAG+AGG | 0.595200 | 5.2:-16711230 | MS.gene82426:CDS |
TGGATTATTGTGGCACAACA+AGG | 0.596993 | 5.2:-16706962 | MS.gene82426:intron |
CCCGAACCCTTCATTCCAGA+CGG | 0.597498 | 5.2:-16711364 | MS.gene82426:CDS |
TCAGTGCCGTCTGGAATGAA+GGG | 0.614244 | 5.2:+16711358 | None:intergenic |
AATATTGTTTCCACTATGTG+AGG | 0.615813 | 5.2:-16708762 | MS.gene82426:intron |
AAAATACTTGACATATACAA+GGG | 0.619470 | 5.2:-16709235 | MS.gene82426:CDS |
ATAAAGCAAAATGCAGCCGT+TGG | 0.620040 | 5.2:+16708834 | None:intergenic |
CAGGAACTTCACCATCAACA+TGG | 0.623265 | 5.2:+16711077 | None:intergenic |
TTAACATACCTTGAATGGAG+TGG | 0.627262 | 5.2:+16707618 | None:intergenic |
CGACATTCCAGATGTACCAA+TGG | 0.627346 | 5.2:-16703750 | MS.gene82426:CDS |
CGTCTGGAATGAAGGGTTCG+GGG | 0.631149 | 5.2:+16711365 | None:intergenic |
TACAATAGGCAAAATCCCCA+AGG | 0.632126 | 5.2:-16709044 | MS.gene82426:CDS |
CCCCTCAATGCAAAATTGGG+AGG | 0.632144 | 5.2:-16709008 | MS.gene82426:CDS |
GGATGTGTTTAAATGCCTTG+GGG | 0.640141 | 5.2:+16709029 | None:intergenic |
ACATACCTTGAATGGAGTGG+AGG | 0.640405 | 5.2:+16707621 | None:intergenic |
AATTCAGGATATTACTCCGG+AGG | 0.641238 | 5.2:-16709456 | MS.gene82426:intron |
CTTGCTGGGATGGATTATTG+TGG | 0.644659 | 5.2:-16706972 | MS.gene82426:CDS |
TTCAATTCTAGGGACTCGGG+TGG | 0.664674 | 5.2:-16709413 | MS.gene82426:CDS |
AAATACTTGACATATACAAG+GGG | 0.670626 | 5.2:-16709234 | MS.gene82426:intron |
AGCTAAGCTTCAACTCAGAG+AGG | 0.674875 | 5.2:-16711239 | MS.gene82426:CDS |
ATATGCTTTGCCGTATCGTG+TGG | 0.675148 | 5.2:-16705814 | MS.gene82426:CDS |
CTAGACCACAGTCGTAACCG+AGG | 0.711855 | 5.2:-16704565 | MS.gene82426:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 16703739 | 16711419 | 16703739 | ID=MS.gene82426 |
chr5.2 | mRNA | 16703739 | 16711419 | 16703739 | ID=MS.gene82426.t1;Parent=MS.gene82426 |
chr5.2 | exon | 16711078 | 16711419 | 16711078 | ID=MS.gene82426.t1.exon1;Parent=MS.gene82426.t1 |
chr5.2 | CDS | 16711078 | 16711419 | 16711078 | ID=cds.MS.gene82426.t1;Parent=MS.gene82426.t1 |
chr5.2 | exon | 16709357 | 16709471 | 16709357 | ID=MS.gene82426.t1.exon2;Parent=MS.gene82426.t1 |
chr5.2 | CDS | 16709357 | 16709471 | 16709357 | ID=cds.MS.gene82426.t1;Parent=MS.gene82426.t1 |
chr5.2 | exon | 16709235 | 16709286 | 16709235 | ID=MS.gene82426.t1.exon3;Parent=MS.gene82426.t1 |
chr5.2 | CDS | 16709235 | 16709286 | 16709235 | ID=cds.MS.gene82426.t1;Parent=MS.gene82426.t1 |
chr5.2 | exon | 16708763 | 16709090 | 16708763 | ID=MS.gene82426.t1.exon4;Parent=MS.gene82426.t1 |
chr5.2 | CDS | 16708763 | 16709090 | 16708763 | ID=cds.MS.gene82426.t1;Parent=MS.gene82426.t1 |
chr5.2 | exon | 16707627 | 16707706 | 16707627 | ID=MS.gene82426.t1.exon5;Parent=MS.gene82426.t1 |
chr5.2 | CDS | 16707627 | 16707706 | 16707627 | ID=cds.MS.gene82426.t1;Parent=MS.gene82426.t1 |
chr5.2 | exon | 16706963 | 16707010 | 16706963 | ID=MS.gene82426.t1.exon6;Parent=MS.gene82426.t1 |
chr5.2 | CDS | 16706963 | 16707010 | 16706963 | ID=cds.MS.gene82426.t1;Parent=MS.gene82426.t1 |
chr5.2 | exon | 16705720 | 16705866 | 16705720 | ID=MS.gene82426.t1.exon7;Parent=MS.gene82426.t1 |
chr5.2 | CDS | 16705720 | 16705866 | 16705720 | ID=cds.MS.gene82426.t1;Parent=MS.gene82426.t1 |
chr5.2 | exon | 16704691 | 16704763 | 16704691 | ID=MS.gene82426.t1.exon8;Parent=MS.gene82426.t1 |
chr5.2 | CDS | 16704691 | 16704763 | 16704691 | ID=cds.MS.gene82426.t1;Parent=MS.gene82426.t1 |
chr5.2 | exon | 16704566 | 16704611 | 16704566 | ID=MS.gene82426.t1.exon9;Parent=MS.gene82426.t1 |
chr5.2 | CDS | 16704566 | 16704611 | 16704566 | ID=cds.MS.gene82426.t1;Parent=MS.gene82426.t1 |
chr5.2 | exon | 16703739 | 16703809 | 16703739 | ID=MS.gene82426.t1.exon10;Parent=MS.gene82426.t1 |
chr5.2 | CDS | 16703739 | 16703809 | 16703739 | ID=cds.MS.gene82426.t1;Parent=MS.gene82426.t1 |
Gene Sequence |
Protein sequence |