AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene50085

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50085.t1 MTR_4g070080 98.925 93 1 0 1 93 1 93 8.14e-64 190
MS.gene50085.t1 MTR_4g070080 98.925 93 1 0 1 93 1 93 5.86e-63 187
MS.gene50085.t1 MTR_4g070190 90.361 83 8 0 2 84 4 86 3.07e-51 158
MS.gene50085.t1 MTR_4g070140 84.337 83 13 0 2 84 4 86 2.76e-47 149
MS.gene50085.t1 MTR_3g075500 54.217 83 38 0 7 89 207 289 4.15e-26 97.8
MS.gene50085.t1 MTR_3g075500 38.272 81 50 0 7 87 110 190 7.49e-14 65.1
MS.gene50085.t1 MTR_4g104470 53.750 80 37 0 7 86 217 296 5.75e-26 97.8
MS.gene50085.t1 MTR_4g104470 39.286 84 51 0 5 88 121 204 1.19e-15 70.1
MS.gene50085.t1 MTR_4g109540 53.165 79 37 0 7 85 43 121 5.91e-26 97.1
MS.gene50085.t1 MTR_7g013730 49.398 83 42 0 7 89 41 123 9.01e-26 96.3
MS.gene50085.t1 MTR_7g013740 46.835 79 42 0 7 85 41 119 1.78e-24 90.1
MS.gene50085.t1 MTR_3g084040 51.899 79 37 1 7 85 37 114 2.43e-24 89.7
MS.gene50085.t1 MTR_4g109540 53.947 76 35 0 10 85 54 129 3.39e-24 92.8
MS.gene50085.t1 MTR_1g064230 50.000 84 42 0 2 85 192 275 8.26e-23 89.0
MS.gene50085.t1 MTR_1g064230 40.541 74 44 0 7 80 85 158 1.89e-11 58.5
MS.gene50085.t1 MTR_3g025880 50.633 79 39 0 7 85 45 123 1.29e-22 90.5
MS.gene50085.t1 MTR_3g075500 57.812 64 27 0 7 70 207 270 1.74e-22 88.2
MS.gene50085.t1 MTR_3g075500 38.272 81 50 0 7 87 110 190 2.92e-14 66.2
MS.gene50085.t1 MTR_3g014000 48.936 94 36 3 8 93 36 125 2.46e-22 84.7
MS.gene50085.t1 MTR_3g080130 42.683 82 47 0 7 88 37 118 1.72e-21 82.4
MS.gene50085.t1 MTR_1g045510 39.535 86 52 0 2 87 200 285 3.32e-20 82.4
MS.gene50085.t1 MTR_7g105260 40.426 94 54 1 4 95 30 123 5.51e-20 78.6
MS.gene50085.t1 MTR_3g084040 50.000 64 31 1 7 70 37 99 1.35e-18 73.9
MS.gene50085.t1 MTR_3g092490 41.053 95 50 3 3 94 22 113 2.99e-17 72.4
MS.gene50085.t1 MTR_4g035310 38.614 101 51 4 3 94 12 110 8.71e-17 72.8
MS.gene50085.t1 MTR_6g477870 40.000 80 48 0 7 86 96 175 1.01e-16 71.2
MS.gene50085.t1 MTR_4g035310 38.614 101 51 4 3 94 12 110 1.03e-16 72.8
MS.gene50085.t1 MTR_3g092490 43.902 82 41 2 7 86 27 105 1.05e-16 72.4
MS.gene50085.t1 MTR_3g092490 43.902 82 41 2 7 86 27 105 1.16e-16 72.4
MS.gene50085.t1 MTR_7g099940 39.241 79 48 0 7 85 36 114 1.90e-16 69.7
MS.gene50085.t1 MTR_4g081520 37.079 89 56 0 1 89 46 134 4.14e-16 68.9
MS.gene50085.t1 MTR_7g117495 50.847 59 29 0 7 65 19 77 5.58e-16 70.5
MS.gene50085.t1 MTR_7g117495 50.847 59 29 0 7 65 19 77 6.61e-16 70.5
MS.gene50085.t1 MTR_7g106440 38.824 85 52 0 3 87 209 293 1.05e-15 70.5
MS.gene50085.t1 MTR_2g096560 36.585 82 52 0 7 88 8 89 1.59e-15 65.9
MS.gene50085.t1 MTR_3g029580 43.243 74 42 0 7 80 33 106 1.62e-15 67.0
MS.gene50085.t1 MTR_4g063560 37.662 77 48 0 7 83 34 110 2.86e-15 65.9
MS.gene50085.t1 MTR_3g055990 37.975 79 47 1 7 85 7 83 3.33e-15 69.7
MS.gene50085.t1 MTR_3g055990 37.975 79 47 1 7 85 7 83 3.64e-15 69.3
MS.gene50085.t1 MTR_5g064120 43.421 76 42 1 7 82 17 91 3.97e-15 68.6
MS.gene50085.t1 MTR_3g116130 40.789 76 44 1 7 82 30 104 4.64e-15 68.6
MS.gene50085.t1 MTR_2g026180 37.975 79 47 1 7 85 5 81 8.26e-15 68.6
MS.gene50085.t1 MTR_8g024520 42.308 78 40 2 7 82 26 100 9.51e-15 67.4
MS.gene50085.t1 MTR_8g024520 42.308 78 40 2 7 82 26 100 9.66e-15 67.4
MS.gene50085.t1 MTR_4g113150 43.373 83 46 1 8 90 9 90 1.22e-14 67.8
MS.gene50085.t1 MTR_4g113150 43.373 83 46 1 8 90 9 90 1.38e-14 67.8
MS.gene50085.t1 MTR_3g065190 43.182 88 49 1 3 89 109 196 1.83e-14 67.4
MS.gene50085.t1 MTR_4g036415 47.297 74 39 0 9 82 454 527 2.21e-14 67.4
MS.gene50085.t1 MTR_1g073690 32.911 79 51 1 7 85 7 83 4.40e-14 66.2
MS.gene50085.t1 MTR_1g073690 32.955 88 58 1 7 94 113 199 1.22e-11 59.3
MS.gene50085.t1 MTR_5g097580 36.709 79 48 1 7 85 7 83 5.01e-14 66.2
MS.gene50085.t1 MTR_5g097580 36.709 79 48 1 7 85 7 83 5.03e-14 66.2
MS.gene50085.t1 MTR_3g116130 40.244 82 47 2 2 82 24 104 7.04e-14 65.5
MS.gene50085.t1 MTR_4g117350 37.179 78 49 0 7 84 72 149 7.16e-14 63.5
MS.gene50085.t1 MTR_6g004810 35.443 79 51 0 7 85 134 212 1.50e-13 64.7
MS.gene50085.t1 MTR_6g004810 37.349 83 50 1 7 89 46 126 1.99e-13 64.3
MS.gene50085.t1 MTR_3g082650 35.443 79 51 0 7 85 107 185 2.99e-13 63.9
MS.gene50085.t1 MTR_3g082650 47.458 59 31 0 7 65 19 77 5.80e-13 63.2
MS.gene50085.t1 MTR_3g029580 41.791 67 39 0 4 70 30 96 4.06e-13 60.8
MS.gene50085.t1 MTR_5g044970 39.535 86 52 0 8 93 12 97 4.99e-13 61.2
MS.gene50085.t1 MTR_3g027140 37.805 82 51 0 1 82 154 235 5.62e-13 62.4
MS.gene50085.t1 MTR_3g027140 35.135 74 48 0 7 80 61 134 4.91e-11 57.0
MS.gene50085.t1 MTR_1g080150 32.099 81 55 0 5 85 131 211 5.92e-13 62.4
MS.gene50085.t1 MTR_1g092860 32.558 86 58 0 7 92 193 278 1.77e-12 61.2
MS.gene50085.t1 MTR_4g124940 37.209 86 53 1 6 91 131 215 1.84e-12 61.6
MS.gene50085.t1 MTR_3g103420 37.975 79 47 1 7 85 11 87 4.04e-12 60.8
MS.gene50085.t1 MTR_3g103420 34.483 87 56 1 7 93 118 203 4.11e-11 57.8
MS.gene50085.t1 MTR_6g477870 37.500 64 40 0 7 70 96 159 4.41e-12 58.9
MS.gene50085.t1 MTR_4g094235 38.462 78 48 0 6 83 16 93 4.59e-12 60.1
MS.gene50085.t1 MTR_4g094235 38.462 78 48 0 6 83 16 93 4.61e-12 60.1
MS.gene50085.t1 MTR_8g022050 39.286 84 50 1 6 89 147 229 5.05e-12 60.5
MS.gene50085.t1 MTR_5g070450 38.462 78 48 0 6 83 16 93 6.29e-12 59.7
MS.gene50085.t1 MTR_1g056520 32.500 80 54 0 3 82 204 283 7.84e-12 59.7
MS.gene50085.t1 MTR_5g070100 38.667 75 44 2 8 81 38 111 1.48e-11 58.9
MS.gene50085.t1 MTR_7g102730 42.466 73 41 1 9 81 101 172 1.52e-11 59.3
MS.gene50085.t1 MTR_4g117350 37.500 64 40 0 7 70 72 135 1.63e-11 56.6
MS.gene50085.t1 MTR_5g017280 41.429 70 38 1 5 74 3 69 2.68e-11 58.5
MS.gene50085.t1 MTR_5g017280 41.429 70 38 1 5 74 3 69 2.86e-11 58.2
MS.gene50085.t1 MTR_7g088140 38.750 80 47 1 7 86 128 205 3.47e-11 58.2
MS.gene50085.t1 MTR_7g088140 38.750 80 47 1 7 86 128 205 3.54e-11 58.2
MS.gene50085.t1 MTR_4g074930 37.500 96 49 3 9 95 379 472 6.24e-11 57.4
MS.gene50085.t1 MTR_4g074930 37.500 96 49 3 9 95 367 460 6.68e-11 57.4
MS.gene50085.t1 MTR_4g074930 37.500 96 49 3 9 95 344 437 7.71e-11 57.0
MS.gene50085.t1 MTR_4g074930 37.500 96 49 3 9 95 332 425 8.65e-11 57.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50085.t1 AT4G39260 74.725 91 23 0 1 91 1 91 3.27e-48 148
MS.gene50085.t1 AT2G21660 82.716 81 14 0 3 83 5 85 9.26e-46 144
MS.gene50085.t1 AT2G21660 82.716 81 14 0 3 83 5 85 1.54e-45 144
MS.gene50085.t1 AT4G39260 72.289 83 23 0 1 83 1 83 2.81e-42 134
MS.gene50085.t1 AT4G39260 72.289 83 23 0 1 83 1 83 1.02e-41 134
MS.gene50085.t1 AT4G39260 72.059 68 19 0 1 68 1 68 8.42e-34 112
MS.gene50085.t1 AT3G26420 56.818 88 38 0 3 90 4 91 2.11e-32 113
MS.gene50085.t1 AT3G23830 53.659 82 38 0 7 88 36 117 2.91e-28 99.8
MS.gene50085.t1 AT3G23830 53.659 82 38 0 7 88 36 117 2.91e-28 99.8
MS.gene50085.t1 AT4G13850 51.190 84 41 0 4 87 33 116 1.34e-26 95.1
MS.gene50085.t1 AT5G61030 53.165 79 37 0 7 85 41 119 1.62e-26 99.4
MS.gene50085.t1 AT5G61030 53.165 79 37 0 7 85 41 119 1.62e-26 99.4
MS.gene50085.t1 AT4G13850 51.190 84 41 0 4 87 33 116 1.73e-26 95.5
MS.gene50085.t1 AT5G50250 51.807 83 40 0 3 85 204 286 1.92e-26 99.0
MS.gene50085.t1 AT5G50250 42.169 83 48 0 5 87 112 194 3.95e-16 71.2
MS.gene50085.t1 AT4G13850 51.190 84 41 0 4 87 33 116 2.19e-26 95.5
MS.gene50085.t1 AT4G13850 51.190 84 41 0 4 87 33 116 2.50e-26 95.5
MS.gene50085.t1 AT4G24770 49.412 85 43 0 6 90 244 328 1.13e-25 97.4
MS.gene50085.t1 AT4G24770 44.578 83 46 0 5 87 149 231 1.38e-16 73.2
MS.gene50085.t1 AT4G24770 49.412 85 43 0 6 90 244 328 1.13e-25 97.4
MS.gene50085.t1 AT4G24770 44.578 83 46 0 5 87 149 231 1.38e-16 73.2
MS.gene50085.t1 AT1G74230 56.579 76 32 1 7 82 35 109 4.32e-23 90.1
MS.gene50085.t1 AT5G06210 45.556 90 49 0 4 93 32 121 6.83e-23 86.3
MS.gene50085.t1 AT2G37220 45.679 81 44 0 7 87 205 285 8.10e-23 89.4
MS.gene50085.t1 AT2G37220 36.264 91 58 0 5 95 90 180 1.51e-12 61.6
MS.gene50085.t1 AT2G21690 49.438 89 40 1 2 85 3 91 4.02e-22 83.6
MS.gene50085.t1 AT5G04280 48.101 79 41 0 7 85 8 86 6.53e-22 87.0
MS.gene50085.t1 AT3G53460 45.783 83 45 0 7 89 279 361 8.35e-22 87.4
MS.gene50085.t1 AT3G53460 45.783 83 45 0 7 89 258 340 1.12e-21 87.0
MS.gene50085.t1 AT3G53460 45.783 83 45 0 7 89 258 340 1.12e-21 87.0
MS.gene50085.t1 AT3G53460 45.783 83 45 0 7 89 258 340 1.12e-21 87.0
MS.gene50085.t1 AT1G18630 48.718 78 40 0 7 84 37 114 6.57e-21 81.3
MS.gene50085.t1 AT5G47320 46.753 77 41 0 7 83 32 108 3.73e-20 80.9
MS.gene50085.t1 AT3G08000 44.578 83 46 0 7 89 42 124 2.46e-19 77.0
MS.gene50085.t1 AT4G13860 44.595 74 41 0 7 80 4 77 5.58e-19 74.7
MS.gene50085.t1 AT1G60000 39.286 84 51 0 2 85 173 256 1.65e-18 77.4
MS.gene50085.t1 AT1G60650 42.529 87 50 0 2 88 8 94 5.70e-18 76.3
MS.gene50085.t1 AT1G60650 42.529 87 50 0 2 88 8 94 5.70e-18 76.3
MS.gene50085.t1 AT5G59865 43.210 81 46 0 7 87 27 107 7.84e-18 72.4
MS.gene50085.t1 AT2G37510 45.946 74 40 0 7 80 35 108 2.80e-17 71.6
MS.gene50085.t1 AT2G46780 46.053 76 40 1 7 82 23 97 9.42e-17 73.6
MS.gene50085.t1 AT2G46780 46.053 76 40 1 7 82 23 97 9.42e-17 73.6
MS.gene50085.t1 AT1G78260 43.902 82 44 2 2 82 12 92 1.39e-16 72.8
MS.gene50085.t1 AT5G19960 43.038 79 44 1 8 86 9 86 2.23e-16 72.4
MS.gene50085.t1 AT1G22910 35.644 101 58 3 1 94 7 107 2.46e-16 71.2
MS.gene50085.t1 AT3G13224 39.759 83 48 1 7 89 20 100 2.55e-16 71.2
MS.gene50085.t1 AT3G13224 39.394 66 40 0 7 72 110 175 8.78e-12 58.9
MS.gene50085.t1 AT1G22330 41.935 93 45 2 7 91 18 109 2.56e-16 72.0
MS.gene50085.t1 AT1G22910 35.644 101 58 3 1 94 7 107 2.74e-16 71.2
MS.gene50085.t1 AT1G78260 44.444 81 43 2 3 82 13 92 2.87e-16 71.6
MS.gene50085.t1 AT1G76460 44.737 76 41 1 7 82 25 99 2.92e-16 71.6
MS.gene50085.t1 AT1G22910 37.624 101 56 3 1 94 7 107 6.60e-16 71.2
MS.gene50085.t1 AT4G26650 39.241 79 46 1 7 85 13 89 1.30e-15 70.9
MS.gene50085.t1 AT4G26650 39.241 79 46 1 7 85 16 92 1.40e-15 70.5
MS.gene50085.t1 AT1G20880 42.105 76 43 1 7 82 25 99 1.43e-15 69.7
MS.gene50085.t1 AT1G20880 42.105 76 43 1 7 82 25 99 1.43e-15 69.7
MS.gene50085.t1 AT1G20880 42.105 76 43 1 7 82 25 99 1.43e-15 69.7
MS.gene50085.t1 AT4G14300 37.975 79 47 1 7 85 7 83 1.97e-15 70.1
MS.gene50085.t1 AT4G14300 34.177 79 51 1 7 85 111 188 8.99e-11 57.0
MS.gene50085.t1 AT4G14300 37.975 79 47 1 7 85 7 83 1.97e-15 70.1
MS.gene50085.t1 AT4G14300 34.177 79 51 1 7 85 111 188 8.99e-11 57.0
MS.gene50085.t1 AT5G55550 40.506 79 45 1 7 85 7 83 3.71e-15 69.3
MS.gene50085.t1 AT5G55550 40.506 79 45 1 7 85 7 83 3.71e-15 69.3
MS.gene50085.t1 AT5G55550 40.506 79 45 1 7 85 7 83 3.71e-15 69.3
MS.gene50085.t1 AT5G55550 40.506 79 45 1 7 85 7 83 3.71e-15 69.3
MS.gene50085.t1 AT5G55550 40.506 79 45 1 7 85 7 83 3.71e-15 69.3
MS.gene50085.t1 AT5G55550 40.506 79 45 1 7 85 7 83 4.12e-15 69.3
MS.gene50085.t1 AT5G55550 40.506 79 45 1 7 85 7 83 4.12e-15 69.3
MS.gene50085.t1 AT5G55550 40.506 79 45 1 7 85 7 83 4.12e-15 69.3
MS.gene50085.t1 AT5G55550 40.506 79 45 1 7 85 7 83 4.12e-15 69.3
MS.gene50085.t1 AT3G52150 40.244 82 49 0 1 82 172 253 4.15e-15 68.2
MS.gene50085.t1 AT3G52150 40.244 82 49 0 1 82 172 253 4.15e-15 68.2
MS.gene50085.t1 AT3G07810 37.975 79 47 1 7 85 7 83 7.22e-15 68.6
MS.gene50085.t1 AT3G07810 37.975 79 47 1 7 85 7 83 7.50e-15 68.6
MS.gene50085.t1 AT1G01080 36.585 82 51 1 1 82 208 288 7.53e-15 68.2
MS.gene50085.t1 AT1G33470 37.500 104 55 3 1 95 1 103 7.82e-15 67.4
MS.gene50085.t1 AT1G33470 37.500 104 55 3 1 95 1 103 7.91e-15 67.4
MS.gene50085.t1 AT1G01080 36.585 82 51 1 1 82 207 287 8.28e-15 67.8
MS.gene50085.t1 AT1G33470 37.500 104 55 3 1 95 1 103 8.55e-15 67.4
MS.gene50085.t1 AT3G46020 36.250 80 51 0 4 83 5 84 8.94e-15 64.3
MS.gene50085.t1 AT5G51300 42.308 78 45 0 5 82 479 556 9.65e-15 68.2
MS.gene50085.t1 AT5G51300 42.308 78 45 0 5 82 479 556 9.65e-15 68.2
MS.gene50085.t1 AT5G51300 42.308 78 45 0 5 82 479 556 9.65e-15 68.2
MS.gene50085.t1 AT5G54580 39.286 84 51 0 2 85 52 135 1.25e-14 65.5
MS.gene50085.t1 AT5G53720 41.250 80 46 1 3 82 6 84 2.42e-14 63.2
MS.gene50085.t1 AT5G11412 42.169 83 44 3 2 82 47 127 2.51e-14 65.1
MS.gene50085.t1 AT4G13860 45.763 59 32 0 22 80 2 60 3.31e-14 62.0
MS.gene50085.t1 AT3G13224 39.759 83 48 1 7 89 11 91 3.52e-14 66.6
MS.gene50085.t1 AT3G13224 34.568 81 53 0 7 87 101 181 9.54e-12 59.7
MS.gene50085.t1 AT2G33410 34.177 79 50 1 7 85 7 83 3.85e-14 66.6
MS.gene50085.t1 AT2G33410 37.975 79 48 1 7 85 111 188 9.68e-12 59.7
MS.gene50085.t1 AT5G55550 42.254 71 39 1 7 77 7 75 4.69e-14 66.2
MS.gene50085.t1 AT5G55550 42.254 71 39 1 7 77 7 75 5.08e-14 66.2
MS.gene50085.t1 AT1G17640 36.585 82 52 0 7 88 158 239 6.38e-14 65.9
MS.gene50085.t1 AT1G17640 38.750 80 47 1 7 86 67 144 2.39e-13 64.3
MS.gene50085.t1 AT1G17640 36.585 82 52 0 7 88 158 239 6.38e-14 65.9
MS.gene50085.t1 AT1G17640 38.750 80 47 1 7 86 67 144 2.39e-13 64.3
MS.gene50085.t1 AT1G17640 36.585 82 52 0 7 88 158 239 6.38e-14 65.9
MS.gene50085.t1 AT1G17640 38.750 80 47 1 7 86 67 144 2.39e-13 64.3
MS.gene50085.t1 AT3G52380 34.524 84 55 0 2 85 215 298 7.35e-14 65.5
MS.gene50085.t1 AT3G52380 36.486 74 47 0 7 80 117 190 6.36e-12 60.1
MS.gene50085.t1 AT2G27330 31.169 77 53 0 8 84 23 99 8.86e-14 62.0
MS.gene50085.t1 AT3G54770 42.105 76 43 1 7 82 18 92 9.10e-14 64.7
MS.gene50085.t1 AT3G54770 42.105 76 43 1 7 82 18 92 9.18e-14 64.7
MS.gene50085.t1 AT1G73530 34.177 79 52 0 7 85 78 156 9.85e-14 63.5
MS.gene50085.t1 AT5G40490 35.443 79 51 0 7 85 114 192 1.73e-13 64.7
MS.gene50085.t1 AT5G47620 35.443 79 49 1 7 85 7 83 2.27e-13 64.3
MS.gene50085.t1 AT5G47620 35.443 79 49 1 7 85 7 83 2.27e-13 64.3
MS.gene50085.t1 AT5G47620 35.443 79 49 1 7 85 7 83 2.27e-13 64.3
MS.gene50085.t1 AT3G14100 38.095 84 52 0 6 89 144 227 2.35e-13 64.3
MS.gene50085.t1 AT3G13224 39.759 83 48 1 7 89 20 100 2.66e-13 63.9
MS.gene50085.t1 AT3G13224 34.568 81 53 0 7 87 110 190 5.03e-11 57.8
MS.gene50085.t1 AT1G54080 39.744 78 47 0 5 82 147 224 9.88e-13 62.4
MS.gene50085.t1 AT3G20930 34.177 79 52 0 7 85 283 361 1.35e-12 62.0
MS.gene50085.t1 AT5G47620 47.059 51 27 0 7 57 7 57 1.39e-12 62.0
MS.gene50085.t1 AT2G18510 39.773 88 52 1 3 89 109 196 1.60e-12 62.0
MS.gene50085.t1 AT5G53680 40.580 69 40 1 7 75 14 81 2.02e-12 59.7
MS.gene50085.t1 AT3G04500 34.615 78 51 0 5 82 136 213 2.10e-12 60.8
MS.gene50085.t1 AT5G40490 40.000 85 49 1 3 87 39 121 2.31e-12 61.6
MS.gene50085.t1 AT5G40490 35.443 79 51 0 7 85 131 209 2.67e-12 61.2
MS.gene50085.t1 AT2G21440 41.026 78 46 0 10 87 24 101 3.57e-12 60.8
MS.gene50085.t1 AT5G64200 39.744 78 47 0 6 83 16 93 4.17e-12 60.5
MS.gene50085.t1 AT5G64200 39.744 78 47 0 6 83 16 93 4.17e-12 60.5
MS.gene50085.t1 AT1G01080 37.681 69 42 1 1 69 207 274 4.27e-12 60.5
MS.gene50085.t1 AT3G06970 35.897 78 49 1 7 84 13 89 9.61e-12 59.7
MS.gene50085.t1 AT4G34110 38.961 77 46 1 9 85 218 293 1.03e-11 59.7
MS.gene50085.t1 AT5G19030 38.158 76 47 0 9 84 80 155 1.05e-11 58.2
MS.gene50085.t1 AT2G43370 40.278 72 43 0 9 80 67 138 1.18e-11 58.5
MS.gene50085.t1 AT1G13690 38.372 86 53 0 8 93 15 100 1.26e-11 57.8
MS.gene50085.t1 AT2G37510 34.343 99 40 1 7 80 35 133 1.26e-11 57.8
MS.gene50085.t1 AT4G36960 41.892 74 40 1 4 77 1 71 1.34e-11 59.3
MS.gene50085.t1 AT4G36960 41.892 74 40 1 4 77 1 71 1.34e-11 59.3
MS.gene50085.t1 AT3G47120 39.189 74 45 0 9 82 39 112 2.07e-11 58.5
MS.gene50085.t1 AT4G27000 37.805 82 50 1 5 85 172 253 2.13e-11 58.9
MS.gene50085.t1 AT2G23350 45.070 71 38 1 9 79 137 206 2.84e-11 58.5
MS.gene50085.t1 AT2G23350 38.462 78 47 1 8 85 227 303 4.71e-11 57.8
MS.gene50085.t1 AT3G47120 39.189 74 45 0 9 82 39 112 2.88e-11 58.2
MS.gene50085.t1 AT2G22100 43.103 58 33 0 8 65 165 222 3.61e-11 58.2
MS.gene50085.t1 AT1G17370 36.905 84 53 0 6 89 139 222 3.71e-11 58.2
MS.gene50085.t1 AT1G17370 36.905 84 53 0 6 89 139 222 3.75e-11 58.2
MS.gene50085.t1 AT5G04280 50.000 46 23 0 40 85 3 48 7.63e-11 57.0
MS.gene50085.t1 AT5G04280 50.000 46 23 0 40 85 3 48 7.63e-11 57.0
MS.gene50085.t1 AT5G04280 50.000 46 23 0 40 85 3 48 7.63e-11 57.0
MS.gene50085.t1 AT5G04280 50.000 46 23 0 40 85 3 48 7.63e-11 57.0
MS.gene50085.t1 AT1G58470 46.154 52 28 0 6 57 6 57 8.55e-11 57.0
MS.gene50085.t1 AT1G58470 46.154 52 28 0 6 57 6 57 8.55e-11 57.0

Find 31 sgRNAs with CRISPR-Local

Find 46 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGGACGATCAAGAGGTTT+TGG 0.283486 4.2:-36780072 MS.gene50085:CDS
ATCATTAACGATCGTGAAAC+TGG 0.286078 4.2:-36780090 MS.gene50085:CDS
AGCAATGAACGGTCAGGATT+TGG 0.313573 4.2:-36780004 MS.gene50085:CDS
TGCTTCAATGGCATCGTTCA+TGG 0.319166 4.2:+36780023 None:intergenic
CTGACCGTTCATTGCTTCAA+TGG 0.378604 4.2:+36780011 None:intergenic
CGCTACCACGGCTCTGAGCT+TGG 0.401331 4.2:+36779959 None:intergenic
GGTAGCGGTGGTGGCGGAGG+AGG 0.428094 4.2:-36779943 MS.gene50085:CDS
CGTGGTAGCGGTGGTGGCGG+AGG 0.433194 4.2:-36779946 MS.gene50085:CDS
CAGAGCCGTGGTAGCGGTGG+TGG 0.439087 4.2:-36779952 MS.gene50085:CDS
GGTGGTGGCGGAGGAGGCCG+TGG 0.439963 4.2:-36779937 MS.gene50085:CDS
AGCCGTGGTAGCGGTGGTGG+CGG 0.473368 4.2:-36779949 MS.gene50085:CDS
GCTTCGTCGGAGGTCTTGCA+TGG 0.475042 4.2:-36780508 MS.gene50085:CDS
GGTGGCGGAGGAGGCCGTGG+TGG 0.482575 4.2:-36779934 None:intergenic
CATTGAAGCAATGAACGGTC+AGG 0.516837 4.2:-36780010 MS.gene50085:CDS
CAAGACCTCCGACGAAGCAT+CGG 0.524569 4.2:+36780513 None:intergenic
GTTGAATACCGATGCTTCGT+CGG 0.525860 4.2:-36780521 MS.gene50085:CDS
CAAGCTCAGAGCCGTGGTAG+CGG 0.533686 4.2:-36779958 MS.gene50085:CDS
CGGCGAGATCGTTGATTCCA+AGG 0.539852 4.2:-36780444 MS.gene50085:intron
GAGAAAGCCTTCTCTCAATA+CGG 0.543855 4.2:-36780464 MS.gene50085:CDS
TTTCTCGAGAGCATCATTGT+CGG 0.550717 4.2:+36780481 None:intergenic
CGTGAAACTGGACGATCAAG+AGG 0.551662 4.2:-36780078 MS.gene50085:CDS
CTCCATATCCACCGCCACCA+CGG 0.564840 4.2:+36779920 None:intergenic
GCTCAGAGCCGTGGTAGCGG+TGG 0.565666 4.2:-36779955 MS.gene50085:CDS
GAATACCGATGCTTCGTCGG+AGG 0.590495 4.2:-36780518 MS.gene50085:CDS
CTCGAGAGCATCATTGTCGG+TGG 0.591544 4.2:+36780484 None:intergenic
CTTCGTCGGAGGTCTTGCAT+GGG 0.591814 4.2:-36780507 MS.gene50085:CDS
CTCCGCCACCACCGCTACCA+CGG 0.595147 4.2:+36779947 None:intergenic
ATGAACGGTCAGGATTTGGA+TGG 0.621464 4.2:-36780000 MS.gene50085:CDS
GTGAACCAAGCTCAGAGCCG+TGG 0.643330 4.2:-36779964 MS.gene50085:CDS
GATCTCGCCGTATTGAGAGA+AGG 0.650761 4.2:+36780457 None:intergenic
GATGCCATTGAAGCAATGAA+CGG 0.670960 4.2:-36780015 MS.gene50085:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCTTTTGATGTTTT+GGG - chr4.2:36780316-36780335 MS.gene50085:intron 15.0%
!!! TTTTTTTTCTTTTGATGTTT+TGG - chr4.2:36780315-36780334 MS.gene50085:intron 15.0%
AACAAAAGTTGAAGATCGAT+CGG - chr4.2:36780259-36780278 MS.gene50085:intron 30.0%
!!! GATTTTGATTCGGATTTCTA+TGG - chr4.2:36780083-36780102 MS.gene50085:CDS 30.0%
!!! TTTTGGGTTTTATTCTGATC+TGG - chr4.2:36780332-36780351 MS.gene50085:intron 30.0%
AAGAAGATGAACGTACCTAT+TGG + chr4.2:36780233-36780252 None:intergenic 35.0%
AAGATCGATCGGTTACTATT+CGG - chr4.2:36780270-36780289 MS.gene50085:intron 35.0%
ATCATTAACGATCGTGAAAC+TGG - chr4.2:36780375-36780394 MS.gene50085:intron 35.0%
TATTACTCACTCACACCAAT+AGG - chr4.2:36780215-36780234 MS.gene50085:intron 35.0%
!! ACTATTCGGTTCTAGATCTA+TGG - chr4.2:36780284-36780303 MS.gene50085:intron 35.0%
!!! GATCTGACACGATTTTGATT+CGG - chr4.2:36780073-36780092 MS.gene50085:CDS 35.0%
CAGAGTAACACAGAACAGAT+CGG + chr4.2:36780131-36780150 None:intergenic 40.0%
GAGAAAGCCTTCTCTCAATA+CGG - chr4.2:36780001-36780020 MS.gene50085:CDS 40.0%
GATGCCATTGAAGCAATGAA+CGG - chr4.2:36780450-36780469 MS.gene50085:CDS 40.0%
!! TTTCTCGAGAGCATCATTGT+CGG + chr4.2:36779987-36780006 None:intergenic 40.0%
AGCAATGAACGGTCAGGATT+TGG - chr4.2:36780461-36780480 MS.gene50085:CDS 45.0%
ATGAACGGTCAGGATTTGGA+TGG - chr4.2:36780465-36780484 MS.gene50085:CDS 45.0%
CATTGAAGCAATGAACGGTC+AGG - chr4.2:36780455-36780474 MS.gene50085:CDS 45.0%
CTGACCGTTCATTGCTTCAA+TGG + chr4.2:36780457-36780476 None:intergenic 45.0%
GTTGAATACCGATGCTTCGT+CGG - chr4.2:36779944-36779963 MS.gene50085:CDS 45.0%
TCGGAGATCACAGATCAGAA+AGG + chr4.2:36780112-36780131 None:intergenic 45.0%
TGCTTCAATGGCATCGTTCA+TGG + chr4.2:36780445-36780464 None:intergenic 45.0%
! ACTGGACGATCAAGAGGTTT+TGG - chr4.2:36780393-36780412 MS.gene50085:intron 45.0%
CGAAGCCTGCAAGCAACAAA+CGG + chr4.2:36780048-36780067 None:intergenic 50.0%
CGTGAAACTGGACGATCAAG+AGG - chr4.2:36780387-36780406 MS.gene50085:intron 50.0%
GATCTCGCCGTATTGAGAGA+AGG + chr4.2:36780011-36780030 None:intergenic 50.0%
TGCAAGCAACAAACGGACCT+TGG + chr4.2:36780041-36780060 None:intergenic 50.0%
! AAGGTCCGTTTGTTGCTTGC+AGG - chr4.2:36780040-36780059 MS.gene50085:CDS 50.0%
! CGTTTGTTGCTTGCAGGCTT+CGG - chr4.2:36780046-36780065 MS.gene50085:CDS 50.0%
CAAGACCTCCGACGAAGCAT+CGG + chr4.2:36779955-36779974 None:intergenic 55.0%
CTTCGTCGGAGGTCTTGCAT+GGG - chr4.2:36779958-36779977 MS.gene50085:CDS 55.0%
GAATACCGATGCTTCGTCGG+AGG - chr4.2:36779947-36779966 MS.gene50085:CDS 55.0%
GTTGCTTGCAGGCTTCGGAT+CGG - chr4.2:36780051-36780070 MS.gene50085:CDS 55.0%
!! CGGCGAGATCGTTGATTCCA+AGG - chr4.2:36780021-36780040 MS.gene50085:CDS 55.0%
!! CTCGAGAGCATCATTGTCGG+TGG + chr4.2:36779984-36780003 None:intergenic 55.0%
CAAGCTCAGAGCCGTGGTAG+CGG - chr4.2:36780507-36780526 MS.gene50085:CDS 60.0%
GCTTCGTCGGAGGTCTTGCA+TGG - chr4.2:36779957-36779976 MS.gene50085:CDS 60.0%
GTGAACCAAGCTCAGAGCCG+TGG - chr4.2:36780501-36780520 MS.gene50085:CDS 60.0%
!! CGCTACCACGGCTCTGAGCT+TGG + chr4.2:36780509-36780528 None:intergenic 65.0%
CTCCGCCACCACCGCTACCA+CGG + chr4.2:36780521-36780540 None:intergenic 70.0%
!! AGCCGTGGTAGCGGTGGTGG+CGG - chr4.2:36780516-36780535 MS.gene50085:CDS 70.0%
!! CAGAGCCGTGGTAGCGGTGG+TGG - chr4.2:36780513-36780532 MS.gene50085:CDS 70.0%
!! GCTCAGAGCCGTGGTAGCGG+TGG - chr4.2:36780510-36780529 MS.gene50085:CDS 70.0%
!! CGTGGTAGCGGTGGTGGCGG+AGG - chr4.2:36780519-36780538 MS.gene50085:CDS 75.0%
!! GGTAGCGGTGGTGGCGGAGG+AGG - chr4.2:36780522-36780541 MS.gene50085:CDS 75.0%
!!! GGTGGTGGCGGAGGAGGCCG+TGG - chr4.2:36780528-36780547 MS.gene50085:CDS 80.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 36779935 36780552 36779935 ID=MS.gene50085
chr4.2 mRNA 36779935 36780552 36779935 ID=MS.gene50085.t1;Parent=MS.gene50085
chr4.2 exon 36780445 36780552 36780445 ID=MS.gene50085.t1.exon1;Parent=MS.gene50085.t1
chr4.2 CDS 36780445 36780552 36780445 ID=cds.MS.gene50085.t1;Parent=MS.gene50085.t1
chr4.2 exon 36779935 36780112 36779935 ID=MS.gene50085.t1.exon2;Parent=MS.gene50085.t1
chr4.2 CDS 36779935 36780112 36779935 ID=cds.MS.gene50085.t1;Parent=MS.gene50085.t1
Gene Sequence

>MS.gene50085

ATGGCTGATGTTGAATACCGATGCTTCGTCGGAGGTCTTGCATGGGCCACCGACAATGATGCTCTCGAGAAAGCCTTCTCTCAATACGGCGAGATCGTTGATTCCAAGGTCCGTTTGTTGCTTGCAGGCTTCGGATCGGATCTGACACGATTTTGATTCGGATTTCTATGGAAACCTTTCTGATCTGTGATCTCCGATCTGTTCTGTGTTACTCTGTTACTTGATCTATTTGTTACTGTTACTGTGATTCTGATTCTGTTACTGTATGATTTGATTCTTTTATTACTCACTCACACCAATAGGTACGTTCATCTTCTTCTTTTGAACAAAAGTTGAAGATCGATCGGTTACTATTCGGTTCTAGATCTATGGATCTGATTTTTTTTTTCTTTTGATGTTTTGGGTTTTATTCTGATCTGGTTTGTTAATTTTTTGTGCAGATCATTAACGATCGTGAAACTGGACGATCAAGAGGTTTTGGATTTGTGACATTCGCTAACGAGAAATCCATGAACGATGCCATTGAAGCAATGAACGGTCAGGATTTGGATGGACGTAACATCACTGTGAACCAAGCTCAGAGCCGTGGTAGCGGTGGTGGCGGAGGAGGCCGTGGTG
Protein sequence

>MS.gene50085.t1

MADVEYRCFVGGLAWATDNDALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEAMNGQDLDGRNITVNQAQSRGSGGGGGGRG