Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053509.t1 | XP_003607966.1 | 91.2 | 283 | 25 | 0 | 1 | 283 | 1 | 283 | 1.50E-138 | 502.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053509.t1 | G7JL76 | 91.2 | 283 | 25 | 0 | 1 | 283 | 1 | 283 | 1.1e-138 | 502.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052224 | MS.gene053509 | -0.808666 | 2.77E-50 | -1.69E-46 |
| MS.gene053401 | MS.gene053509 | 0.802763 | 4.81E-49 | -1.69E-46 |
| MS.gene053509 | MS.gene056338 | 0.824169 | 9.33E-54 | -1.69E-46 |
| MS.gene053509 | MS.gene23262 | 0.80199 | 6.94E-49 | -1.69E-46 |
| MS.gene053509 | MS.gene45593 | 0.809394 | 1.93E-50 | -1.69E-46 |
| MS.gene053509 | MS.gene50085 | 0.801876 | 7.32E-49 | -1.69E-46 |
| MS.gene053509 | MS.gene54605 | 0.821206 | 4.57E-53 | -1.69E-46 |
| MS.gene053509 | MS.gene64738 | -0.809793 | 1.59E-50 | -1.69E-46 |
| MS.gene053509 | MS.gene65495 | 0.81997 | 8.78E-53 | -1.69E-46 |
| MS.gene053509 | MS.gene95023 | 0.805831 | 1.10E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053509.t1 | MTR_4g085990 | 91.166 | 283 | 25 | 0 | 1 | 283 | 1 | 283 | 0.0 | 529 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 80 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCAACGACGAACAGATTT+TGG | 0.138569 | 4.3:+26812615 | None:intergenic |
| CGGCGACGCCGCTCCGTTTA+AGG | 0.170028 | 4.3:-26815546 | MS.gene053509:intron |
| GTCATATCTTAGTTCTTTAG+AGG | 0.270733 | 4.3:-26814500 | MS.gene053509:CDS |
| TTTCAAGCTTGATCTTCTTC+TGG | 0.301755 | 4.3:+26814234 | None:intergenic |
| CTGTTCGTCGTTGCATTCTC+AGG | 0.311602 | 4.3:-26812608 | MS.gene053509:CDS |
| AATTCATGGCCTTCATTCTC+TGG | 0.332105 | 4.3:+26812669 | None:intergenic |
| GCAGCATGCCCATGGCTAAA+AGG | 0.335052 | 4.3:-26812874 | MS.gene053509:CDS |
| GCTGATTCTCATGTTGTTGC+AGG | 0.351005 | 4.3:-26814185 | MS.gene053509:CDS |
| AAACCATGGTCATAGGTATT+AGG | 0.356119 | 4.3:+26814113 | None:intergenic |
| TATGAGCAGGTTGTCCCATT+TGG | 0.359262 | 4.3:-26812735 | MS.gene053509:intron |
| TTTGGGACACGGAAACTCTC+TGG | 0.384612 | 4.3:+26812633 | None:intergenic |
| CATGGGCATGCTGCTTGAAC+TGG | 0.388086 | 4.3:+26812883 | None:intergenic |
| TCAGCTGCGCTCTCTAACAT+AGG | 0.395468 | 4.3:+26814203 | None:intergenic |
| CTGACCTGCCTATGCATACT+AGG | 0.400834 | 4.3:+26814376 | None:intergenic |
| TTATCTACCATTGCAGCTCC+TGG | 0.417378 | 4.3:+26814155 | None:intergenic |
| GGAGATGTTGTCGGCGGTGG+TGG | 0.423486 | 4.3:+26815568 | None:intergenic |
| GCAAAGTAAACCATGGTCAT+AGG | 0.430258 | 4.3:+26814106 | None:intergenic |
| GATGTTGTCGGCGGTGGTGG+CGG | 0.431602 | 4.3:+26815571 | None:intergenic |
| GTTCTATACATTTACGTGGT+TGG | 0.433133 | 4.3:-26814453 | MS.gene053509:CDS |
| TTTGGAAAGTTTCAGACTGC+TGG | 0.436663 | 4.3:-26812717 | MS.gene053509:CDS |
| GCAGTCTGAAACTTTCCAAA+TGG | 0.443560 | 4.3:+26812720 | None:intergenic |
| GAGTGTGAAGTTACCTTAAA+CGG | 0.448421 | 4.3:+26815533 | None:intergenic |
| GAGTCGGATTGCAGTACTAT+AGG | 0.456476 | 4.3:-26813996 | MS.gene053509:intron |
| GGCGGTGGTGGCGGAGGAGT+CGG | 0.456643 | 4.3:+26815580 | None:intergenic |
| GCCGGAGATGTTGTCGGCGG+TGG | 0.459903 | 4.3:+26815565 | None:intergenic |
| GTTGTCGGCGGTGGTGGCGG+AGG | 0.463689 | 4.3:+26815574 | None:intergenic |
| CGGAGGGGAACGTCGGCGAA+TGG | 0.473651 | 4.3:+26815633 | None:intergenic |
| GTGGTTGGAGCTTTCACAGT+AGG | 0.478766 | 4.3:-26814438 | MS.gene053509:CDS |
| TGGTTGGAGCTTTCACAGTA+GGG | 0.495797 | 4.3:-26814437 | MS.gene053509:CDS |
| GGAGTTGAGATAGCAATTCA+TGG | 0.498699 | 4.3:+26812655 | None:intergenic |
| CTTAAACGGAGCGGCGTCGC+CGG | 0.499113 | 4.3:+26815547 | None:intergenic |
| CAGCTGCGCTCTCTAACATA+GGG | 0.501825 | 4.3:+26814204 | None:intergenic |
| TACTCCTAGTATGCATAGGC+AGG | 0.513247 | 4.3:-26814380 | MS.gene053509:intron |
| CGAGTCAACTCGGGACCGGA+GGG | 0.514047 | 4.3:+26815617 | None:intergenic |
| TTGGGACACGGAAACTCTCT+GGG | 0.514398 | 4.3:+26812634 | None:intergenic |
| TACTGCAATCCGACTCTGCA+TGG | 0.515249 | 4.3:+26814003 | None:intergenic |
| ACCACCGCCGACAACATCTC+CGG | 0.519709 | 4.3:-26815566 | MS.gene053509:CDS |
| GATCTGTCCAGCGTCTAGAC+TGG | 0.525092 | 4.3:+26814533 | None:intergenic |
| AGAAGCGGAGCGAGTCAACT+CGG | 0.527050 | 4.3:+26815607 | None:intergenic |
| GGCGTCGCCGGAGATGTTGT+CGG | 0.530753 | 4.3:+26815559 | None:intergenic |
| GGAGCGAGTCAACTCGGGAC+CGG | 0.532546 | 4.3:+26815613 | None:intergenic |
| CAGTCTCTGGCTCTACAAGA+TGG | 0.536291 | 4.3:-26814260 | MS.gene053509:CDS |
| CATTCGCCGACGTTCCCCTC+CGG | 0.539419 | 4.3:-26815632 | MS.gene053509:CDS |
| CAGTCTGAAACTTTCCAAAT+GGG | 0.540796 | 4.3:+26812721 | None:intergenic |
| GCGAGTCAACTCGGGACCGG+AGG | 0.541007 | 4.3:+26815616 | None:intergenic |
| TTGCTTCTCCACACAACTTG+CGG | 0.541525 | 4.3:+26814034 | None:intergenic |
| ACAACTTGCGGCTGACATGT+TGG | 0.543608 | 4.3:+26814046 | None:intergenic |
| CATGTCAGCCGCAAGTTGTG+TGG | 0.549493 | 4.3:-26814042 | MS.gene053509:CDS |
| AAGTGAACCAGGAGCTGCAA+TGG | 0.564449 | 4.3:-26814162 | MS.gene053509:CDS |
| GTGCAGTGCTGCAATAGCAC+GGG | 0.564869 | 4.3:-26812146 | MS.gene053509:intron |
| GGCAAATGCTGAACTCCCGC+TGG | 0.566895 | 4.3:+26814067 | None:intergenic |
| GTTGTTGCAGGAAGTGAACC+AGG | 0.568696 | 4.3:-26814173 | MS.gene053509:CDS |
| CCATGGTTTACTTTGCGACA+AGG | 0.568719 | 4.3:-26814099 | MS.gene053509:CDS |
| ACAAGGAGATTCATGCCAGC+GGG | 0.569007 | 4.3:-26814082 | MS.gene053509:CDS |
| CAGTTCAAGCAGCATGCCCA+TGG | 0.569164 | 4.3:-26812882 | MS.gene053509:CDS |
| GAAGCGGAGCGAGTCAACTC+GGG | 0.571539 | 4.3:+26815608 | None:intergenic |
| GGTCAGTGATCAGAACTTCA+AGG | 0.574496 | 4.3:-26812915 | MS.gene053509:CDS |
| TGTGCAGTGCTGCAATAGCA+CGG | 0.580243 | 4.3:-26812147 | MS.gene053509:intron |
| AGGGGAACGTCGGCGAATGG+AGG | 0.580420 | 4.3:+26815636 | None:intergenic |
| AATTCAACACCAGAGAATGA+AGG | 0.581399 | 4.3:-26812678 | MS.gene053509:CDS |
| AAAATACTCCTAGTATGCAT+AGG | 0.589165 | 4.3:-26814384 | MS.gene053509:CDS |
| TGTTCGTCGTTGCATTCTCA+GGG | 0.590260 | 4.3:-26812607 | MS.gene053509:CDS |
| CATCGTTCTATACATTTACG+TGG | 0.590322 | 4.3:-26814457 | MS.gene053509:CDS |
| TAAATTCCACAGTACTTGAT+CGG | 0.594214 | 4.3:+26812820 | None:intergenic |
| GAGCCTAATACCTATGACCA+TGG | 0.605194 | 4.3:-26814116 | MS.gene053509:CDS |
| GACAAGGAGATTCATGCCAG+CGG | 0.608297 | 4.3:-26814083 | MS.gene053509:CDS |
| TCGGGACCGGAGGGGAACGT+CGG | 0.611595 | 4.3:+26815626 | None:intergenic |
| GTCGTTGCATTCTCAGGGAT+AGG | 0.613936 | 4.3:-26812602 | MS.gene053509:intron |
| AATGGAGGTTACGACGGAGA+GGG | 0.631319 | 4.3:+26815651 | None:intergenic |
| ATGTTCATTCCATGCAGAGT+CGG | 0.633709 | 4.3:-26814012 | MS.gene053509:CDS |
| ACCAGGACCAGTCTAGACGC+TGG | 0.642505 | 4.3:-26814540 | MS.gene053509:intron |
| TTGAAGACTGATGCAGCTGA+TGG | 0.643170 | 4.3:-26812851 | MS.gene053509:CDS |
| GAATGGAGGTTACGACGGAG+AGG | 0.660383 | 4.3:+26815650 | None:intergenic |
| CCTTGTCGCAAAGTAAACCA+TGG | 0.678411 | 4.3:+26814099 | None:intergenic |
| AGCTGCGCTCTCTAACATAG+GGG | 0.693425 | 4.3:+26814205 | None:intergenic |
| GTCGCCGGAGATGTTGTCGG+CGG | 0.693953 | 4.3:+26815562 | None:intergenic |
| TCGGCGAATGGAGGTTACGA+CGG | 0.703235 | 4.3:+26815645 | None:intergenic |
| GAGTCAACTCGGGACCGGAG+GGG | 0.705777 | 4.3:+26815618 | None:intergenic |
| TGAAGTTACCTTAAACGGAG+CGG | 0.719373 | 4.3:+26815538 | None:intergenic |
| TGCAGTGCTGCAATAGCACG+GGG | 0.731197 | 4.3:-26812145 | MS.gene053509:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATCTAATATCTAATAT+TGG | - | chr4.3:26813009-26813028 | MS.gene053509:intron | 10.0% |
| !!! | GATTAATTTTATTTATAAGT+TGG | - | chr4.3:26815630-26815649 | MS.gene053509:CDS | 10.0% |
| !! | CTTTGAATATTAACATTTAA+AGG | - | chr4.3:26814204-26814223 | MS.gene053509:CDS | 15.0% |
| !! | TATATTACATTAAACTCTAT+GGG | + | chr4.3:26815395-26815414 | None:intergenic | 15.0% |
| !!! | ATCATTTTAGTAAATTGTTT+CGG | - | chr4.3:26812731-26812750 | MS.gene053509:intron | 15.0% |
| !!! | TTTTTGTTAGATGAAATTTT+GGG | - | chr4.3:26815474-26815493 | MS.gene053509:intron | 15.0% |
| !!! | TTTTTTATTTGTCATATTAG+AGG | - | chr4.3:26814867-26814886 | MS.gene053509:intron | 15.0% |
| !!! | TTTTTTGTTAGATGAAATTT+TGG | - | chr4.3:26815473-26815492 | MS.gene053509:intron | 15.0% |
| !! | AAGAGAATAGAAAATTTACT+TGG | - | chr4.3:26815281-26815300 | MS.gene053509:intron | 20.0% |
| !! | AATCTCAAGTAAATTTGAAT+GGG | - | chr4.3:26815021-26815040 | MS.gene053509:intron | 20.0% |
| !! | AATGTATGACATAAATTTGT+TGG | - | chr4.3:26814466-26814485 | MS.gene053509:CDS | 20.0% |
| !! | CTATATTACATTAAACTCTA+TGG | + | chr4.3:26815396-26815415 | None:intergenic | 20.0% |
| !! | GAATGTAAAAAGAACAAATA+AGG | - | chr4.3:26812872-26812891 | MS.gene053509:CDS | 20.0% |
| !! | GTATAATTTATACATCTGTA+TGG | - | chr4.3:26812666-26812685 | MS.gene053509:CDS | 20.0% |
| !!! | AAAATAGTTTAAAAGCATAG+TGG | + | chr4.3:26814737-26814756 | None:intergenic | 20.0% |
| !!! | AAATAGTTTAAAAGCATAGT+GGG | + | chr4.3:26814736-26814755 | None:intergenic | 20.0% |
| !!! | ATTTAAGTTTCTCTAAACAT+TGG | - | chr4.3:26814009-26814028 | MS.gene053509:CDS | 20.0% |
| !!! | CTGTATTTAAATGAGTTTTA+TGG | - | chr4.3:26814659-26814678 | MS.gene053509:intron | 20.0% |
| !!! | TAAGGAAAATCATTTTGAAA+AGG | - | chr4.3:26812890-26812909 | MS.gene053509:CDS | 20.0% |
| !!! | TTAATTCTAAATTTTGTACC+AGG | - | chr4.3:26813246-26813265 | MS.gene053509:intron | 20.0% |
| !!! | TTTTTGATTGCTTGTAAATT+TGG | - | chr4.3:26813214-26813233 | MS.gene053509:intron | 20.0% |
| ! | AAAACATAAACTCTAAACCA+CGG | + | chr4.3:26812533-26812552 | None:intergenic | 25.0% |
| ! | AATTTACTTGAGATTGTTTC+AGG | + | chr4.3:26815016-26815035 | None:intergenic | 25.0% |
| ! | ACCCAAATGTAAATCTATAA+AGG | + | chr4.3:26814311-26814330 | None:intergenic | 25.0% |
| ! | AGACTGAAAGGAAAAAAAAA+GGG | + | chr4.3:26813529-26813548 | None:intergenic | 25.0% |
| ! | ATTGTCAATTTCAAACTCTT+GGG | + | chr4.3:26813166-26813185 | None:intergenic | 25.0% |
| ! | CAATCTCAAGTAAATTTGAA+TGG | - | chr4.3:26815020-26815039 | MS.gene053509:intron | 25.0% |
| ! | CACTAAATTCAACAAGAATA+GGG | + | chr4.3:26815360-26815379 | None:intergenic | 25.0% |
| ! | CAGAGATATTGAGATATTAT+AGG | + | chr4.3:26813088-26813107 | None:intergenic | 25.0% |
| ! | CTATAATATCTCAATATCTC+TGG | - | chr4.3:26813086-26813105 | MS.gene053509:intron | 25.0% |
| ! | CTTGAAAACCACTTATTTAA+AGG | + | chr4.3:26814686-26814705 | None:intergenic | 25.0% |
| ! | GAGTTTAATGTAATATAGTG+AGG | - | chr4.3:26815398-26815417 | MS.gene053509:intron | 25.0% |
| ! | GCCTTTATAGATTTACATTT+GGG | - | chr4.3:26814307-26814326 | MS.gene053509:intron | 25.0% |
| ! | GGAAAAAAAAAGGGATAAAA+AGG | + | chr4.3:26813520-26813539 | None:intergenic | 25.0% |
| ! | TAACTGATATGCAATGTTTA+TGG | + | chr4.3:26814082-26814101 | None:intergenic | 25.0% |
| ! | TATGTAAAGGAAAATCAGAT+GGG | - | chr4.3:26815330-26815349 | MS.gene053509:intron | 25.0% |
| ! | TATTGTCAATTTCAAACTCT+TGG | + | chr4.3:26813167-26813186 | None:intergenic | 25.0% |
| ! | TTATGTAAAGGAAAATCAGA+TGG | - | chr4.3:26815329-26815348 | MS.gene053509:intron | 25.0% |
| ! | TTTATGGTCCTTTAAATAAG+TGG | - | chr4.3:26814675-26814694 | MS.gene053509:intron | 25.0% |
| !! | AATAGTTTAAAAGCATAGTG+GGG | + | chr4.3:26814735-26814754 | None:intergenic | 25.0% |
| !! | TATTTAGTTTAAATGACCAC+TGG | - | chr4.3:26814045-26814064 | MS.gene053509:CDS | 25.0% |
| !!! | ATAATAAAGAGTGTCTATCA+TGG | - | chr4.3:26813184-26813203 | MS.gene053509:intron | 25.0% |
| !!! | ATTTTTTTCCCAGTATAATC+AGG | - | chr4.3:26813494-26813513 | MS.gene053509:intron | 25.0% |
| !!! | CCAAGAGAGTTTTTATTTAT+GGG | - | chr4.3:26814266-26814285 | MS.gene053509:intron | 25.0% |
| !!! | TAATAAAGAGTGTCTATCAT+GGG | - | chr4.3:26813185-26813204 | MS.gene053509:intron | 25.0% |
| !!! | TACGCTTCGATTTTTTTTTA+TGG | - | chr4.3:26812344-26812363 | MS.gene053509:intron | 25.0% |
| !!! | TACTTTTTCTTTTTGCATGT+TGG | - | chr4.3:26813840-26813859 | MS.gene053509:intron | 25.0% |
| AAAACAACATCTTGTGTACA+AGG | + | chr4.3:26813918-26813937 | None:intergenic | 30.0% | |
| AAAATACTCCTAGTATGCAT+AGG | - | chr4.3:26813419-26813438 | MS.gene053509:intron | 30.0% | |
| AAATATCACAACCTTATTCC+TGG | + | chr4.3:26814835-26814854 | None:intergenic | 30.0% | |
| AAATCCAAACAGCTATTTAC+AGG | + | chr4.3:26812425-26812444 | None:intergenic | 30.0% | |
| AACTGAACTATTAGATCATC+CGG | - | chr4.3:26814549-26814568 | MS.gene053509:intron | 30.0% | |
| AAGTGATTCATTTCTTTAGC+TGG | - | chr4.3:26815526-26815545 | MS.gene053509:intron | 30.0% | |
| AATATCACAACCTTATTCCT+GGG | + | chr4.3:26814834-26814853 | None:intergenic | 30.0% | |
| ACTATATGCATATACCTTGA+GGG | + | chr4.3:26813950-26813969 | None:intergenic | 30.0% | |
| ATAAAAAGGCCTGATTATAC+TGG | + | chr4.3:26813506-26813525 | None:intergenic | 30.0% | |
| ATCGAAGCGTAAAAGAAAAA+CGG | + | chr4.3:26812335-26812354 | None:intergenic | 30.0% | |
| ATGTAAAGGAAAATCAGATG+GGG | - | chr4.3:26815331-26815350 | MS.gene053509:intron | 30.0% | |
| ATTACCACACATAAACACAA+TGG | + | chr4.3:26813476-26813495 | None:intergenic | 30.0% | |
| ATTCTTGTTGAATTTAGTGC+TGG | - | chr4.3:26815361-26815380 | MS.gene053509:intron | 30.0% | |
| CCCATAAATAAAAACTCTCT+TGG | + | chr4.3:26814269-26814288 | None:intergenic | 30.0% | |
| CTAATAGTTCAGTTTACTTG+AGG | + | chr4.3:26814543-26814562 | None:intergenic | 30.0% | |
| CTCTGATTGTTAACAGAAAA+TGG | + | chr4.3:26812818-26812837 | None:intergenic | 30.0% | |
| GAGACTGAAAGGAAAAAAAA+AGG | + | chr4.3:26813530-26813549 | None:intergenic | 30.0% | |
| GCACTAAATTCAACAAGAAT+AGG | + | chr4.3:26815361-26815380 | None:intergenic | 30.0% | |
| GCATTGGATTTCTGTAAATA+CGG | + | chr4.3:26815598-26815617 | None:intergenic | 30.0% | |
| GGCCTTTATAGATTTACATT+TGG | - | chr4.3:26814306-26814325 | MS.gene053509:intron | 30.0% | |
| TAAAAAGGCCTGATTATACT+GGG | + | chr4.3:26813505-26813524 | None:intergenic | 30.0% | |
| TAAATTCCACAGTACTTGAT+CGG | + | chr4.3:26814986-26815005 | None:intergenic | 30.0% | |
| TAGTTATGTATAAAGCCTTG+TGG | + | chr4.3:26814388-26814407 | None:intergenic | 30.0% | |
| TTGATTCACTTCTCATAGAA+AGG | + | chr4.3:26814518-26814537 | None:intergenic | 30.0% | |
| TTGTCAATTTCAAACTCTTG+GGG | + | chr4.3:26813165-26813184 | None:intergenic | 30.0% | |
| ! | ATTAGAAAGTGCAATTACAG+CGG | + | chr4.3:26815567-26815586 | None:intergenic | 30.0% |
| ! | GAAAAAATTGCGAGTTTTTG+TGG | - | chr4.3:26812368-26812387 | MS.gene053509:intron | 30.0% |
| ! | GTCATATCTTAGTTCTTTAG+AGG | - | chr4.3:26813303-26813322 | MS.gene053509:intron | 30.0% |
| ! | TAGAAGATCTGAAATTGCTA+AGG | - | chr4.3:26812598-26812617 | MS.gene053509:intron | 30.0% |
| ! | TAGAAGCATATTGCTATCAA+AGG | + | chr4.3:26815430-26815449 | None:intergenic | 30.0% |
| ! | TCTTTTTATGCTTTGACAGT+GGG | - | chr4.3:26814332-26814351 | MS.gene053509:intron | 30.0% |
| ! | TTCTTTTTATGCTTTGACAG+TGG | - | chr4.3:26814331-26814350 | MS.gene053509:intron | 30.0% |
| ! | TTGTTAGATGAAATTTTGGG+TGG | - | chr4.3:26815477-26815496 | MS.gene053509:intron | 30.0% |
| !! | GCCAAGAGAGTTTTTATTTA+TGG | - | chr4.3:26814265-26814284 | MS.gene053509:intron | 30.0% |
| !! | TCTCTAAACATTGGTTTACT+CGG | - | chr4.3:26814018-26814037 | MS.gene053509:CDS | 30.0% |
| !! | TTATATCCATGAGCTTGTTT+TGG | - | chr4.3:26812770-26812789 | MS.gene053509:intron | 30.0% |
| !!! | TTTTTTTTCCTTTCAGTCTC+TGG | - | chr4.3:26813530-26813549 | MS.gene053509:intron | 30.0% |
| AAACCATGGTCATAGGTATT+AGG | + | chr4.3:26813693-26813712 | None:intergenic | 35.0% | |
| AAGAGATTTCGTACCATTGT+TGG | - | chr4.3:26812973-26812992 | MS.gene053509:intron | 35.0% | |
| AAGGATTAATGTCATAGTCG+AGG | - | chr4.3:26812617-26812636 | MS.gene053509:CDS | 35.0% | |
| AATCATAGAGACATGTGCAT+TGG | + | chr4.3:26815614-26815633 | None:intergenic | 35.0% | |
| AATTCAACACCAGAGAATGA+AGG | - | chr4.3:26815125-26815144 | MS.gene053509:intron | 35.0% | |
| ACTGAACTATTAGATCATCC+GGG | - | chr4.3:26814550-26814569 | MS.gene053509:intron | 35.0% | |
| CAATTAGAGCAAGAGAACAA+AGG | + | chr4.3:26814425-26814444 | None:intergenic | 35.0% | |
| CATCGTTCTATACATTTACG+TGG | - | chr4.3:26813346-26813365 | MS.gene053509:intron | 35.0% | |
| GACTATATGCATATACCTTG+AGG | + | chr4.3:26813951-26813970 | None:intergenic | 35.0% | |
| GAGTGTGAAGTTACCTTAAA+CGG | + | chr4.3:26812273-26812292 | None:intergenic | 35.0% | |
| GTTCTATACATTTACGTGGT+TGG | - | chr4.3:26813350-26813369 | MS.gene053509:intron | 35.0% | |
| TCAAATCCAAAACAAGCTCA+TGG | + | chr4.3:26812779-26812798 | None:intergenic | 35.0% | |
| TGTTCCTGTAAATAGCTGTT+TGG | - | chr4.3:26812418-26812437 | MS.gene053509:intron | 35.0% | |
| TGTTGTAATGTATGCTGCAA+TGG | - | chr4.3:26814148-26814167 | MS.gene053509:CDS | 35.0% | |
| TTCATGACTCAACTCATGAA+AGG | - | chr4.3:26812850-26812869 | MS.gene053509:CDS | 35.0% | |
| TTTCAAGCTTGATCTTCTTC+TGG | + | chr4.3:26813572-26813591 | None:intergenic | 35.0% | |
| ! | ATTCCAAAAGCTTTTACTGC+AGG | + | chr4.3:26814117-26814136 | None:intergenic | 35.0% |
| ! | CAGTCTGAAACTTTCCAAAT+GGG | + | chr4.3:26815085-26815104 | None:intergenic | 35.0% |
| ! | GGATTAAGGGGGTTAAATTT+TGG | - | chr4.3:26814169-26814188 | MS.gene053509:CDS | 35.0% |
| ! | TTAGAAAGTGCAATTACAGC+GGG | + | chr4.3:26815566-26815585 | None:intergenic | 35.0% |
| ! | TTCATGTTCCTTTTATGAGC+AGG | - | chr4.3:26815055-26815074 | MS.gene053509:intron | 35.0% |
| ! | TTTCCTGCAGTAAAAGCTTT+TGG | - | chr4.3:26814111-26814130 | MS.gene053509:CDS | 35.0% |
| !! | ATGTATGCTGCAATGGATTA+AGG | - | chr4.3:26814155-26814174 | MS.gene053509:CDS | 35.0% |
| !! | TGTATGCTGCAATGGATTAA+GGG | - | chr4.3:26814156-26814175 | MS.gene053509:CDS | 35.0% |
| !! | TGTTGAATTTAGTGCTGGTT+AGG | - | chr4.3:26815366-26815385 | MS.gene053509:intron | 35.0% |
| !!! | AGTGGGTTTTTTAATGTGGA+TGG | - | chr4.3:26814349-26814368 | MS.gene053509:intron | 35.0% |
| !!! | ATTGTGATAGTTTTTTGCCC+AGG | - | chr4.3:26814814-26814833 | MS.gene053509:intron | 35.0% |
| !!! | TAGTTTTTTGCCCAGGAATA+AGG | - | chr4.3:26814821-26814840 | MS.gene053509:intron | 35.0% |
| !!! | TGACAGTGGGTTTTTTAATG+TGG | - | chr4.3:26814345-26814364 | MS.gene053509:intron | 35.0% |
| AACTTGTCGGGCTTATGTAA+AGG | - | chr4.3:26815317-26815336 | MS.gene053509:intron | 40.0% | |
| AATTACAGCGGGAAAACTTG+AGG | + | chr4.3:26815555-26815574 | None:intergenic | 40.0% | |
| AATTCATGGCCTTCATTCTC+TGG | + | chr4.3:26815137-26815156 | None:intergenic | 40.0% | |
| ACACAATGGAGACTCTAAAC+TGG | + | chr4.3:26813462-26813481 | None:intergenic | 40.0% | |
| ATGTTCATTCCATGCAGAGT+CGG | - | chr4.3:26813791-26813810 | MS.gene053509:intron | 40.0% | |
| CTGAACTATTAGATCATCCG+GGG | - | chr4.3:26814551-26814570 | MS.gene053509:intron | 40.0% | |
| GCAAAGTAAACCATGGTCAT+AGG | + | chr4.3:26813700-26813719 | None:intergenic | 40.0% | |
| GGAGTTGAGATAGCAATTCA+TGG | + | chr4.3:26815151-26815170 | None:intergenic | 40.0% | |
| GTCTCCATTGTGTTTATGTG+TGG | - | chr4.3:26813469-26813488 | MS.gene053509:intron | 40.0% | |
| TACAAGGTGCAAGAAAAGAC+AGG | + | chr4.3:26813902-26813921 | None:intergenic | 40.0% | |
| TACTTCAACACCTAAACAGC+TGG | + | chr4.3:26815507-26815526 | None:intergenic | 40.0% | |
| TATGGCATTGTTTAAGCCAG+TGG | + | chr4.3:26814064-26814083 | None:intergenic | 40.0% | |
| TCATAGTCGAGGTTTAACTG+TGG | - | chr4.3:26812628-26812647 | MS.gene053509:CDS | 40.0% | |
| TCTCGAAATTGTGCTTTGCA+TGG | - | chr4.3:26812496-26812515 | MS.gene053509:intron | 40.0% | |
| TGAAGTTACCTTAAACGGAG+CGG | + | chr4.3:26812268-26812287 | None:intergenic | 40.0% | |
| TGCCCTTTCAAGAAACTTGT+CGG | - | chr4.3:26815304-26815323 | MS.gene053509:intron | 40.0% | |
| TTTGCAAGACTATTCCACGT+GGG | - | chr4.3:26814755-26814774 | MS.gene053509:intron | 40.0% | |
| TTTGGAAAGTTTCAGACTGC+TGG | - | chr4.3:26815086-26815105 | MS.gene053509:intron | 40.0% | |
| ! | AGTCTTCAACCTTTTAGCCA+TGG | + | chr4.3:26814941-26814960 | None:intergenic | 40.0% |
| ! | ATGCAACGACGAACAGATTT+TGG | + | chr4.3:26815191-26815210 | None:intergenic | 40.0% |
| ! | GCAGTCTGAAACTTTCCAAA+TGG | + | chr4.3:26815086-26815105 | None:intergenic | 40.0% |
| ! | GTCTTCAACCTTTTAGCCAT+GGG | + | chr4.3:26814940-26814959 | None:intergenic | 40.0% |
| ! | TGCAACGACGAACAGATTTT+GGG | + | chr4.3:26815190-26815209 | None:intergenic | 40.0% |
| ! | TTTTGCAAGACTATTCCACG+TGG | - | chr4.3:26814754-26814773 | MS.gene053509:intron | 40.0% |
| !! | GGTTTATTGACTCTTCCACA+AGG | - | chr4.3:26814370-26814389 | MS.gene053509:intron | 40.0% |
| !! | GTATGCTGCAATGGATTAAG+GGG | - | chr4.3:26814157-26814176 | MS.gene053509:CDS | 40.0% |
| !! | TATGCTGCAATGGATTAAGG+GGG | - | chr4.3:26814158-26814177 | MS.gene053509:CDS | 40.0% |
| AACAGTCTCATTCACACGAC+TGG | + | chr4.3:26812399-26812418 | None:intergenic | 45.0% | |
| AAGATTGTTCCTTCTGTCCC+CGG | + | chr4.3:26814571-26814590 | None:intergenic | 45.0% | |
| AGCCCGACAAGTTTCTTGAA+AGG | + | chr4.3:26815310-26815329 | None:intergenic | 45.0% | |
| CAGTGTACATCAATCAGCAG+GGG | - | chr4.3:26814241-26814260 | MS.gene053509:CDS | 45.0% | |
| CCAAGACTATGAGCCAACAA+TGG | + | chr4.3:26812989-26813008 | None:intergenic | 45.0% | |
| CCAGTGTACATCAATCAGCA+GGG | - | chr4.3:26814240-26814259 | MS.gene053509:CDS | 45.0% | |
| CCATGGTTTACTTTGCGACA+AGG | - | chr4.3:26813704-26813723 | MS.gene053509:intron | 45.0% | |
| CCTTGTCGCAAAGTAAACCA+TGG | + | chr4.3:26813707-26813726 | None:intergenic | 45.0% | |
| GAACAAAGGCTCAGGTATCA+TGG | + | chr4.3:26814411-26814430 | None:intergenic | 45.0% | |
| GAGCCTAATACCTATGACCA+TGG | - | chr4.3:26813687-26813706 | MS.gene053509:intron | 45.0% | |
| GAGTCGGATTGCAGTACTAT+AGG | - | chr4.3:26813807-26813826 | MS.gene053509:intron | 45.0% | |
| GCCCGACAAGTTTCTTGAAA+GGG | + | chr4.3:26815309-26815328 | None:intergenic | 45.0% | |
| GCCCTTTCAAGAAACTTGTC+GGG | - | chr4.3:26815305-26815324 | MS.gene053509:intron | 45.0% | |
| GGTCAGTGATCAGAACTTCA+AGG | - | chr4.3:26814888-26814907 | MS.gene053509:intron | 45.0% | |
| TACTCCTAGTATGCATAGGC+AGG | - | chr4.3:26813423-26813442 | MS.gene053509:intron | 45.0% | |
| TAGAATTAGTATCGCCCACG+TGG | + | chr4.3:26814772-26814791 | None:intergenic | 45.0% | |
| TATGAGCAGGTTGTCCCATT+TGG | - | chr4.3:26815068-26815087 | MS.gene053509:intron | 45.0% | |
| TGGGACAACCTGCTCATAAA+AGG | + | chr4.3:26815066-26815085 | None:intergenic | 45.0% | |
| TGGGACTAGAGTATGATGCA+TGG | - | chr4.3:26814285-26814304 | MS.gene053509:intron | 45.0% | |
| TGGTTGGAGCTTTCACAGTA+GGG | - | chr4.3:26813366-26813385 | MS.gene053509:intron | 45.0% | |
| TGTTCGTCGTTGCATTCTCA+GGG | - | chr4.3:26815196-26815215 | MS.gene053509:intron | 45.0% | |
| TTATCTACCATTGCAGCTCC+TGG | + | chr4.3:26813651-26813670 | None:intergenic | 45.0% | |
| TTGAAGACTGATGCAGCTGA+TGG | - | chr4.3:26814952-26814971 | MS.gene053509:intron | 45.0% | |
| TTGCTTCTCCACACAACTTG+CGG | + | chr4.3:26813772-26813791 | None:intergenic | 45.0% | |
| TTGTAGAGCCAGAGACTGAA+AGG | + | chr4.3:26813541-26813560 | None:intergenic | 45.0% | |
| ! | GCTGATTCTCATGTTGTTGC+AGG | - | chr4.3:26813618-26813637 | MS.gene053509:intron | 45.0% |
| ! | GTTTTTCATGCTCACCCTCA+AGG | - | chr4.3:26813933-26813952 | MS.gene053509:intron | 45.0% |
| !! | CCATTGTTGGCTCATAGTCT+TGG | - | chr4.3:26812986-26813005 | MS.gene053509:intron | 45.0% |
| !!! | GACGAACAGATTTTGGGACA+CGG | + | chr4.3:26815184-26815203 | None:intergenic | 45.0% |
| AAGTGAACCAGGAGCTGCAA+TGG | - | chr4.3:26813641-26813660 | MS.gene053509:intron | 50.0% | |
| AATGGAGGTTACGACGGAGA+GGG | + | chr4.3:26812155-26812174 | None:intergenic | 50.0% | |
| ACAACTTGCGGCTGACATGT+TGG | + | chr4.3:26813760-26813779 | None:intergenic | 50.0% | |
| ACAAGGAGATTCATGCCAGC+GGG | - | chr4.3:26813721-26813740 | MS.gene053509:intron | 50.0% | |
| AGCTGCGCTCTCTAACATAG+GGG | + | chr4.3:26813601-26813620 | None:intergenic | 50.0% | |
| CAGCTGCGCTCTCTAACATA+GGG | + | chr4.3:26813602-26813621 | None:intergenic | 50.0% | |
| CTGACCTGCCTATGCATACT+AGG | + | chr4.3:26813430-26813449 | None:intergenic | 50.0% | |
| CTGTTCGTCGTTGCATTCTC+AGG | - | chr4.3:26815195-26815214 | MS.gene053509:intron | 50.0% | |
| GACAAGGAGATTCATGCCAG+CGG | - | chr4.3:26813720-26813739 | MS.gene053509:intron | 50.0% | |
| GAGCAAGAGAACAAAGGCTC+AGG | + | chr4.3:26814419-26814438 | None:intergenic | 50.0% | |
| GCCAGTGTACATCAATCAGC+AGG | - | chr4.3:26814239-26814258 | MS.gene053509:CDS | 50.0% | |
| GCTGATTGATGTACACTGGC+TGG | + | chr4.3:26814239-26814258 | None:intergenic | 50.0% | |
| GGAGGAGTCGGAAAAAGAAG+CGG | + | chr4.3:26812214-26812233 | None:intergenic | 50.0% | |
| GGGTGGTTAACCAGCTGTTT+AGG | - | chr4.3:26815494-26815513 | MS.gene053509:intron | 50.0% | |
| GTCGTTGCATTCTCAGGGAT+AGG | - | chr4.3:26815201-26815220 | MS.gene053509:intron | 50.0% | |
| GTGGTTGGAGCTTTCACAGT+AGG | - | chr4.3:26813365-26813384 | MS.gene053509:intron | 50.0% | |
| GTTGTTGCAGGAAGTGAACC+AGG | - | chr4.3:26813630-26813649 | MS.gene053509:intron | 50.0% | |
| TACTGCAATCCGACTCTGCA+TGG | + | chr4.3:26813803-26813822 | None:intergenic | 50.0% | |
| TCAGCTGCGCTCTCTAACAT+AGG | + | chr4.3:26813603-26813622 | None:intergenic | 50.0% | |
| TGTGCAGTGCTGCAATAGCA+CGG | - | chr4.3:26815656-26815675 | MS.gene053509:CDS | 50.0% | |
| TTAGATCATCCGGGGACAGA+AGG | - | chr4.3:26814559-26814578 | MS.gene053509:intron | 50.0% | |
| TTGGGACACGGAAACTCTCT+GGG | + | chr4.3:26815172-26815191 | None:intergenic | 50.0% | |
| ! | CCCTGCTGATTGATGTACAC+TGG | + | chr4.3:26814243-26814262 | None:intergenic | 50.0% |
| ! | TTTGGGACACGGAAACTCTC+TGG | + | chr4.3:26815173-26815192 | None:intergenic | 50.0% |
| !! | CAAGCACCGATCAAGTACTG+TGG | - | chr4.3:26814977-26814996 | MS.gene053509:intron | 50.0% |
| !! | CAGTCTCTGGCTCTACAAGA+TGG | - | chr4.3:26813543-26813562 | MS.gene053509:intron | 50.0% |
| AGAAGCGGAGCGAGTCAACT+CGG | + | chr4.3:26812199-26812218 | None:intergenic | 55.0% | |
| CAGTTCAAGCAGCATGCCCA+TGG | - | chr4.3:26814921-26814940 | MS.gene053509:intron | 55.0% | |
| CATGTCAGCCGCAAGTTGTG+TGG | - | chr4.3:26813761-26813780 | MS.gene053509:intron | 55.0% | |
| GAATGGAGGTTACGACGGAG+AGG | + | chr4.3:26812156-26812175 | None:intergenic | 55.0% | |
| GATCTGTCCAGCGTCTAGAC+TGG | + | chr4.3:26813273-26813292 | None:intergenic | 55.0% | |
| GCAGCATGCCCATGGCTAAA+AGG | - | chr4.3:26814929-26814948 | MS.gene053509:intron | 55.0% | |
| GCATGGCGATTAAGCTTCCG+TGG | - | chr4.3:26812513-26812532 | MS.gene053509:intron | 55.0% | |
| GTGCAGTGCTGCAATAGCAC+GGG | - | chr4.3:26815657-26815676 | MS.gene053509:CDS | 55.0% | |
| TCGGCGAATGGAGGTTACGA+CGG | + | chr4.3:26812161-26812180 | None:intergenic | 55.0% | |
| TGCAGTGCTGCAATAGCACG+GGG | - | chr4.3:26815658-26815677 | MS.gene053509:CDS | 55.0% | |
| ! | CATGGGCATGCTGCTTGAAC+TGG | + | chr4.3:26814923-26814942 | None:intergenic | 55.0% |
| ACCACCGCCGACAACATCTC+CGG | - | chr4.3:26812237-26812256 | MS.gene053509:intron | 60.0% | |
| ACCAGGACCAGTCTAGACGC+TGG | - | chr4.3:26813263-26813282 | MS.gene053509:intron | 60.0% | |
| GAAGCGGAGCGAGTCAACTC+GGG | + | chr4.3:26812198-26812217 | None:intergenic | 60.0% | |
| GGCAAATGCTGAACTCCCGC+TGG | + | chr4.3:26813739-26813758 | None:intergenic | 60.0% | |
| ! | TCCAGCGTCTAGACTGGTCC+TGG | + | chr4.3:26813267-26813286 | None:intergenic | 60.0% |
| AGGGGAACGTCGGCGAATGG+AGG | + | chr4.3:26812170-26812189 | None:intergenic | 65.0% | |
| CATTCGCCGACGTTCCCCTC+CGG | - | chr4.3:26812171-26812190 | MS.gene053509:intron | 65.0% | |
| CGAGTCAACTCGGGACCGGA+GGG | + | chr4.3:26812189-26812208 | None:intergenic | 65.0% | |
| CTTAAACGGAGCGGCGTCGC+CGG | + | chr4.3:26812259-26812278 | None:intergenic | 65.0% | |
| GAGTCAACTCGGGACCGGAG+GGG | + | chr4.3:26812188-26812207 | None:intergenic | 65.0% | |
| GGAGATGTTGTCGGCGGTGG+TGG | + | chr4.3:26812238-26812257 | None:intergenic | 65.0% | |
| GGAGCGAGTCAACTCGGGAC+CGG | + | chr4.3:26812193-26812212 | None:intergenic | 65.0% | |
| GGCGTCGCCGGAGATGTTGT+CGG | + | chr4.3:26812247-26812266 | None:intergenic | 65.0% | |
| GTCGCCGGAGATGTTGTCGG+CGG | + | chr4.3:26812244-26812263 | None:intergenic | 65.0% | |
| ! | GATGTTGTCGGCGGTGGTGG+CGG | + | chr4.3:26812235-26812254 | None:intergenic | 65.0% |
| CGGAGGGGAACGTCGGCGAA+TGG | + | chr4.3:26812173-26812192 | None:intergenic | 70.0% | |
| CGGCGACGCCGCTCCGTTTA+AGG | - | chr4.3:26812257-26812276 | MS.gene053509:intron | 70.0% | |
| GCCGGAGATGTTGTCGGCGG+TGG | + | chr4.3:26812241-26812260 | None:intergenic | 70.0% | |
| GCGAGTCAACTCGGGACCGG+AGG | + | chr4.3:26812190-26812209 | None:intergenic | 70.0% | |
| TCGGGACCGGAGGGGAACGT+CGG | + | chr4.3:26812180-26812199 | None:intergenic | 70.0% | |
| !! | GGCGGTGGTGGCGGAGGAGT+CGG | + | chr4.3:26812226-26812245 | None:intergenic | 75.0% |
| !! | GTTGTCGGCGGTGGTGGCGG+AGG | + | chr4.3:26812232-26812251 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 26812138 | 26815687 | 26812138 | ID=MS.gene053509 |
| chr4.3 | mRNA | 26812138 | 26815687 | 26812138 | ID=MS.gene053509.t1;Parent=MS.gene053509 |
| chr4.3 | exon | 26815547 | 26815687 | 26815547 | ID=MS.gene053509.t1.exon1;Parent=MS.gene053509.t1 |
| chr4.3 | CDS | 26815547 | 26815687 | 26815547 | ID=cds.MS.gene053509.t1;Parent=MS.gene053509.t1 |
| chr4.3 | exon | 26814381 | 26814557 | 26814381 | ID=MS.gene053509.t1.exon2;Parent=MS.gene053509.t1 |
| chr4.3 | CDS | 26814381 | 26814557 | 26814381 | ID=cds.MS.gene053509.t1;Parent=MS.gene053509.t1 |
| chr4.3 | exon | 26813997 | 26814279 | 26813997 | ID=MS.gene053509.t1.exon3;Parent=MS.gene053509.t1 |
| chr4.3 | CDS | 26813997 | 26814279 | 26813997 | ID=cds.MS.gene053509.t1;Parent=MS.gene053509.t1 |
| chr4.3 | exon | 26812835 | 26812938 | 26812835 | ID=MS.gene053509.t1.exon4;Parent=MS.gene053509.t1 |
| chr4.3 | CDS | 26812835 | 26812938 | 26812835 | ID=cds.MS.gene053509.t1;Parent=MS.gene053509.t1 |
| chr4.3 | exon | 26812603 | 26812748 | 26812603 | ID=MS.gene053509.t1.exon5;Parent=MS.gene053509.t1 |
| chr4.3 | CDS | 26812603 | 26812748 | 26812603 | ID=cds.MS.gene053509.t1;Parent=MS.gene053509.t1 |
| chr4.3 | exon | 26812138 | 26812162 | 26812138 | ID=MS.gene053509.t1.exon6;Parent=MS.gene053509.t1 |
| chr4.3 | CDS | 26812138 | 26812162 | 26812138 | ID=cds.MS.gene053509.t1;Parent=MS.gene053509.t1 |
| Gene Sequence |
| Protein sequence |
