Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50170.t1 | XP_003616407.1 | 99.3 | 153 | 1 | 0 | 1 | 153 | 1 | 153 | 2.00E-81 | 311.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50170.t1 | Q9M2T2 | 49.4 | 154 | 76 | 2 | 1 | 152 | 1 | 154 | 2.1e-39 | 163.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50170.t1 | G7KBR2 | 99.3 | 153 | 1 | 0 | 1 | 153 | 1 | 153 | 1.4e-81 | 311.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054892 | MS.gene50170 | 0.813943 | 1.98E-51 | -1.69E-46 |
| MS.gene054893 | MS.gene50170 | 0.811738 | 6.02E-51 | -1.69E-46 |
| MS.gene055513 | MS.gene50170 | 0.810002 | 1.43E-50 | -1.69E-46 |
| MS.gene057102 | MS.gene50170 | 0.81248 | 4.15E-51 | -1.69E-46 |
| MS.gene060259 | MS.gene50170 | 0.819424 | 1.17E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50170.t1 | MTR_5g079880 | 99.346 | 153 | 1 | 0 | 1 | 153 | 1 | 153 | 6.90e-112 | 314 |
| MS.gene50170.t1 | MTR_5g079890 | 59.615 | 156 | 60 | 3 | 1 | 153 | 1 | 156 | 8.82e-57 | 175 |
| MS.gene50170.t1 | MTR_5g079890 | 60.870 | 138 | 52 | 2 | 1 | 136 | 1 | 138 | 1.25e-50 | 159 |
| MS.gene50170.t1 | MTR_8g032320 | 40.645 | 155 | 77 | 4 | 1 | 151 | 1 | 144 | 1.34e-36 | 123 |
| MS.gene50170.t1 | MTR_8g032300 | 41.290 | 155 | 76 | 5 | 1 | 151 | 1 | 144 | 3.76e-36 | 122 |
| MS.gene50170.t1 | MTR_1g008950 | 42.143 | 140 | 70 | 3 | 1 | 140 | 1 | 129 | 2.62e-33 | 114 |
| MS.gene50170.t1 | MTR_8g030870 | 34.043 | 141 | 92 | 1 | 1 | 140 | 1 | 141 | 6.11e-24 | 92.4 |
| MS.gene50170.t1 | MTR_7g075960 | 49.123 | 57 | 25 | 1 | 25 | 81 | 1 | 53 | 1.74e-13 | 62.0 |
| MS.gene50170.t1 | MTR_5g004800 | 28.571 | 105 | 71 | 1 | 6 | 110 | 15 | 115 | 2.12e-12 | 62.8 |
| MS.gene50170.t1 | MTR_5g004870 | 25.385 | 130 | 86 | 2 | 6 | 135 | 11 | 129 | 4.02e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50170.t1 | AT3G55470 | 49.020 | 153 | 77 | 1 | 1 | 152 | 1 | 153 | 2.09e-53 | 166 |
| MS.gene50170.t1 | AT3G55470 | 49.351 | 154 | 76 | 2 | 1 | 152 | 1 | 154 | 4.86e-52 | 162 |
| MS.gene50170.t1 | AT1G63220 | 39.355 | 155 | 80 | 4 | 1 | 152 | 1 | 144 | 1.82e-29 | 105 |
| MS.gene50170.t1 | AT4G00467 | 35.036 | 137 | 81 | 3 | 1 | 133 | 1 | 133 | 4.27e-23 | 90.1 |
| MS.gene50170.t1 | AT4G00467 | 35.036 | 137 | 81 | 3 | 1 | 133 | 1 | 133 | 6.85e-23 | 90.1 |
| MS.gene50170.t1 | AT1G63220 | 34.839 | 155 | 73 | 5 | 1 | 152 | 1 | 130 | 3.95e-20 | 80.9 |
| MS.gene50170.t1 | AT4G34150 | 33.333 | 96 | 60 | 2 | 5 | 100 | 11 | 102 | 1.56e-13 | 66.2 |
| MS.gene50170.t1 | AT3G07940 | 34.021 | 97 | 58 | 3 | 3 | 99 | 228 | 318 | 3.81e-11 | 60.1 |
Find 35 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCAAGAAACCGATATCTT+TGG | 0.326342 | 5.4:+62718870 | MS.gene50170:CDS |
| CTGTTATTTACCAAAGATAT+CGG | 0.335307 | 5.4:-62718880 | None:intergenic |
| AGTGTGAGAGAGATGACAAT+TGG | 0.367078 | 5.4:+62718813 | None:intergenic |
| AGAGATGACAATTGGGTTCA+TGG | 0.374970 | 5.4:+62718821 | None:intergenic |
| TGGGTTCATGGAAGTGCTTT+TGG | 0.389535 | 5.4:+62718833 | MS.gene50170:CDS |
| AATCTATGTAAAGGATCTAT+TGG | 0.391697 | 5.4:+62721049 | MS.gene50170:CDS |
| CACAAGAGCAGTGTAGTTCA+TGG | 0.424916 | 5.4:+62719143 | MS.gene50170:CDS |
| TTGTATTGGTCACCTGATCC+AGG | 0.448750 | 5.4:-62720555 | None:intergenic |
| CAAGCTCAATCTTAAAATCA+TGG | 0.468524 | 5.4:+62720575 | MS.gene50170:CDS |
| TTCTTTGTTGATAGCTCGCA+TGG | 0.469488 | 5.4:+62719085 | MS.gene50170:intron |
| TTGGCAGAAGGAGCAGAGAA+TGG | 0.500158 | 5.4:+62721068 | MS.gene50170:CDS |
| GTGTGAGAGAGATGACAATT+GGG | 0.504856 | 5.4:+62718814 | None:intergenic |
| ATGTTCTCTTACAATACAAA+AGG | 0.507230 | 5.4:+62719114 | MS.gene50170:CDS |
| AGAGTGGAATACCCTGGATC+AGG | 0.509095 | 5.4:+62720543 | MS.gene50170:CDS |
| TTCACCGCAATAAGAATTGT+CGG | 0.511915 | 5.4:-62721132 | None:intergenic |
| TTGTATTGTAAGAGAACATA+CGG | 0.514214 | 5.4:-62719110 | None:intergenic |
| TATTGCGGTGAACTCGAAGT+TGG | 0.529111 | 5.4:+62721143 | MS.gene50170:CDS |
| ACAAATTTCTCATTCCATAC+CGG | 0.530096 | 5.4:-62720516 | None:intergenic |
| CGTGTCCAGAATCTATGTAA+AGG | 0.538764 | 5.4:+62721040 | MS.gene50170:intron |
| TGGCAGAAGGAGCAGAGAAT+GGG | 0.549208 | 5.4:+62721069 | MS.gene50170:CDS |
| GAATATACTGACGATGACAT+TGG | 0.554722 | 5.4:+62721521 | MS.gene50170:CDS |
| CAATCTTAAAATCATGGACA+AGG | 0.579708 | 5.4:+62720581 | MS.gene50170:CDS |
| CGATGACATTGGAGGATGGA+GGG | 0.582080 | 5.4:+62721532 | MS.gene50170:CDS |
| TGAGAAATTTGTATTCAGAG+TGG | 0.587344 | 5.4:+62720527 | MS.gene50170:CDS |
| TGGTATAACTTACACTCGAA+AGG | 0.597779 | 5.4:+62721163 | MS.gene50170:CDS |
| CGAGCCGACAATTCTTATTG+CGG | 0.603237 | 5.4:+62721128 | MS.gene50170:CDS |
| GGCCTGACCAACAAAATCAT+CGG | 0.607539 | 5.4:-62720616 | None:intergenic |
| GTAAAGGATCTATTGGCAGA+AGG | 0.610328 | 5.4:+62721056 | MS.gene50170:CDS |
| TGTATTGGTCACCTGATCCA+GGG | 0.614439 | 5.4:-62720554 | None:intergenic |
| ACGATGACATTGGAGGATGG+AGG | 0.616751 | 5.4:+62721531 | MS.gene50170:CDS |
| GTATTCAGAGTGGAATACCC+TGG | 0.618075 | 5.4:+62720537 | MS.gene50170:CDS |
| CTGACGATGACATTGGAGGA+TGG | 0.621959 | 5.4:+62721528 | MS.gene50170:CDS |
| CGAACCACACTATACTTGCG+AGG | 0.665447 | 5.4:-62721107 | None:intergenic |
| TCGTCCTCGCAAGTATAGTG+TGG | 0.665568 | 5.4:+62721103 | MS.gene50170:CDS |
| TATACTGACGATGACATTGG+AGG | 0.665915 | 5.4:+62721524 | MS.gene50170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACAATAATAAAATTAGAA+AGG | - | chr5.4:62718914-62718933 | None:intergenic | 10.0% |
| !! | AACAATAATAAAATTAGAAA+GGG | - | chr5.4:62718913-62718932 | None:intergenic | 10.0% |
| !! | ATAATTGTAAAATCATAAAT+AGG | - | chr5.4:62721286-62721305 | None:intergenic | 10.0% |
| !! | TAATTGTAAAATCATAAATA+GGG | - | chr5.4:62721285-62721304 | None:intergenic | 10.0% |
| !!! | TTTTTTCTTATTCTAAAATA+TGG | + | chr5.4:62718965-62718984 | MS.gene50170:intron | 10.0% |
| !!! | TTAGCATTTGAATTTTTTTA+TGG | - | chr5.4:62720409-62720428 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTATTTGCTTAAC+TGG | + | chr5.4:62720462-62720481 | MS.gene50170:intron | 15.0% |
| !! | GAAAATACTAAACATAAGTT+TGG | - | chr5.4:62721469-62721488 | None:intergenic | 20.0% |
| !! | TGTAATTGACAATGAAAATT+AGG | - | chr5.4:62721413-62721432 | None:intergenic | 20.0% |
| !!! | AAAAGTCACATTTTTTACAA+TGG | - | chr5.4:62721242-62721261 | None:intergenic | 20.0% |
| !!! | ATTTTCATTGTCAATTACAT+TGG | + | chr5.4:62721414-62721433 | MS.gene50170:intron | 20.0% |
| !!! | CATAGATTAAATTTTGTAAG+TGG | + | chr5.4:62719590-62719609 | MS.gene50170:intron | 20.0% |
| !!! | TTGTAGTGAAATTTTATCTA+AGG | - | chr5.4:62720437-62720456 | None:intergenic | 20.0% |
| ! | AAATCAAAAAGAAATGCAGA+AGG | - | chr5.4:62719850-62719869 | None:intergenic | 25.0% |
| ! | AAATTGTTTCATTCATGAAC+AGG | - | chr5.4:62720044-62720063 | None:intergenic | 25.0% |
| ! | AATCTATGTAAAGGATCTAT+TGG | + | chr5.4:62721049-62721068 | MS.gene50170:CDS | 25.0% |
| ! | ATCCTTCAAATTACATATTG+TGG | - | chr5.4:62720301-62720320 | None:intergenic | 25.0% |
| ! | ATGTTCTCTTACAATACAAA+AGG | + | chr5.4:62719114-62719133 | MS.gene50170:CDS | 25.0% |
| ! | ATTACCCTTTATCAATTATC+AGG | - | chr5.4:62721014-62721033 | None:intergenic | 25.0% |
| ! | TACTAAACATAAGTTTGGTT+TGG | - | chr5.4:62721464-62721483 | None:intergenic | 25.0% |
| ! | TGATATTGAAAGAGTGAAAT+AGG | + | chr5.4:62719755-62719774 | MS.gene50170:intron | 25.0% |
| ! | TTATGATATGTATGCATTCA+CGG | + | chr5.4:62721348-62721367 | MS.gene50170:intron | 25.0% |
| ! | TTATGTAGTTCATGATTCAA+CGG | + | chr5.4:62719623-62719642 | MS.gene50170:intron | 25.0% |
| ! | TTGACCTGATAATTGATAAA+GGG | + | chr5.4:62721007-62721026 | MS.gene50170:intron | 25.0% |
| ! | TTGTATTGTAAGAGAACATA+CGG | - | chr5.4:62719113-62719132 | None:intergenic | 25.0% |
| !! | AGTATTTTCTCTAATGTTCT+TGG | + | chr5.4:62721480-62721499 | MS.gene50170:intron | 25.0% |
| !! | ATGAAACTGCATTTTTGAAT+TGG | - | chr5.4:62720711-62720730 | None:intergenic | 25.0% |
| !! | ATTTGTTAGGTTTAATCTAG+GGG | + | chr5.4:62719783-62719802 | MS.gene50170:intron | 25.0% |
| !! | CTGTTATTTACCAAAGATAT+CGG | - | chr5.4:62718883-62718902 | None:intergenic | 25.0% |
| !! | GAAAAAATGCTTTAAATCTG+AGG | - | chr5.4:62718952-62718971 | None:intergenic | 25.0% |
| !! | GCATTTTTGAATTGGTTAAT+CGG | - | chr5.4:62720703-62720722 | None:intergenic | 25.0% |
| !! | TTAAGGAATTGAACATTTTG+TGG | + | chr5.4:62719922-62719941 | MS.gene50170:intron | 25.0% |
| !!! | AATTTTTTTATGGCTCTAGT+TGG | - | chr5.4:62720399-62720418 | None:intergenic | 25.0% |
| !!! | AGATTTGTTAGGTTTAATCT+AGG | + | chr5.4:62719781-62719800 | MS.gene50170:intron | 25.0% |
| !!! | ATTTTAATCAATCATGACTC+TGG | - | chr5.4:62720953-62720972 | None:intergenic | 25.0% |
| !!! | CATTTCTTTTTGATTTCTTG+TGG | + | chr5.4:62719854-62719873 | MS.gene50170:intron | 25.0% |
| !!! | GATTTGTTAGGTTTAATCTA+GGG | + | chr5.4:62719782-62719801 | MS.gene50170:intron | 25.0% |
| !!! | TTTTAAGATTGAGCTTGTAT+TGG | - | chr5.4:62720572-62720591 | None:intergenic | 25.0% |
| ACAAAAAACCCTAAATGAGT+AGG | + | chr5.4:62720919-62720938 | MS.gene50170:intron | 30.0% | |
| ACAAATTTCTCATTCCATAC+CGG | - | chr5.4:62720519-62720538 | None:intergenic | 30.0% | |
| ACTATCTTGAACCAATTTAG+TGG | - | chr5.4:62719654-62719673 | None:intergenic | 30.0% | |
| ATTGTGTGTGTTTGTGTTTA+TGG | + | chr5.4:62719285-62719304 | MS.gene50170:intron | 30.0% | |
| CAAGCTCAATCTTAAAATCA+TGG | + | chr5.4:62720575-62720594 | MS.gene50170:CDS | 30.0% | |
| CAATCTTAAAATCATGGACA+AGG | + | chr5.4:62720581-62720600 | MS.gene50170:CDS | 30.0% | |
| CTCCACAATATGTAATTTGA+AGG | + | chr5.4:62720296-62720315 | MS.gene50170:intron | 30.0% | |
| CTTGACCTGATAATTGATAA+AGG | + | chr5.4:62721006-62721025 | MS.gene50170:intron | 30.0% | |
| TAGATCCTTTACATAGATTC+TGG | - | chr5.4:62721048-62721067 | None:intergenic | 30.0% | |
| TCAAAGTTACATACATGCAA+TGG | + | chr5.4:62720320-62720339 | MS.gene50170:intron | 30.0% | |
| TGAGAAATTTGTATTCAGAG+TGG | + | chr5.4:62720527-62720546 | MS.gene50170:CDS | 30.0% | |
| TGGTATCTTAAACCTTTGTT+AGG | + | chr5.4:62719305-62719324 | MS.gene50170:intron | 30.0% | |
| TGTAATGTCCTACTCATTTA+GGG | - | chr5.4:62720930-62720949 | None:intergenic | 30.0% | |
| TTAATCAATTGCCTTGTGTT+TGG | + | chr5.4:62719361-62719380 | MS.gene50170:intron | 30.0% | |
| TTGAATGTATCCACATACAT+CGG | + | chr5.4:62720212-62720231 | MS.gene50170:intron | 30.0% | |
| TTTGTTAGGTTTAATCTAGG+GGG | + | chr5.4:62719784-62719803 | MS.gene50170:intron | 30.0% | |
| ! | AACACAAACACACACAATTT+TGG | - | chr5.4:62719283-62719302 | None:intergenic | 30.0% |
| ! | ATGACTGATGCAATTAGTTT+AGG | - | chr5.4:62720662-62720681 | None:intergenic | 30.0% |
| ! | GAAATAGGAAGAGATTTGTT+AGG | + | chr5.4:62719770-62719789 | MS.gene50170:intron | 30.0% |
| ! | TATTTTTCGTGATCTGTGAT+TGG | + | chr5.4:62720870-62720889 | MS.gene50170:intron | 30.0% |
| ! | TCATACACTACATATTGACT+AGG | - | chr5.4:62721323-62721342 | None:intergenic | 30.0% |
| ! | TTTTCTTCCGATGATTTTGT+TGG | + | chr5.4:62720609-62720628 | MS.gene50170:CDS | 30.0% |
| !! | GACATGAAATGTTCACTTTT+TGG | + | chr5.4:62719208-62719227 | MS.gene50170:intron | 30.0% |
| !!! | AAGCAGACGTTTATTTTTAC+TGG | - | chr5.4:62720347-62720366 | None:intergenic | 30.0% |
| !!! | TGGTGTTTTATTTTTCCTCT+TGG | + | chr5.4:62718985-62719004 | MS.gene50170:intron | 30.0% |
| !!! | TTCTTTTTGATTTCTTGTGG+AGG | + | chr5.4:62719857-62719876 | MS.gene50170:intron | 30.0% |
| AAATACTCCACCATTCACTT+CGG | - | chr5.4:62719545-62719564 | None:intergenic | 35.0% | |
| AATGAAATGTCCGAAGTGAA+TGG | + | chr5.4:62719532-62719551 | MS.gene50170:intron | 35.0% | |
| AGATCAGAAGATAAACCAAG+AGG | - | chr5.4:62719003-62719022 | None:intergenic | 35.0% | |
| AGTTGGAAAAGGAAGAAGAA+AGG | - | chr5.4:62720275-62720294 | None:intergenic | 35.0% | |
| ATGTTCTTGGAATTCATCAC+AGG | + | chr5.4:62721493-62721512 | MS.gene50170:intron | 35.0% | |
| ATTACATATTGTGGAGCAGT+TGG | - | chr5.4:62720292-62720311 | None:intergenic | 35.0% | |
| ATTTATCCATGTGTGACAAC+TGG | - | chr5.4:62719998-62720017 | None:intergenic | 35.0% | |
| CACTCTTTCAATATCACAAC+AGG | - | chr5.4:62719751-62719770 | None:intergenic | 35.0% | |
| CATTTGCATGTAAATCTGAG+AGG | - | chr5.4:62719028-62719047 | None:intergenic | 35.0% | |
| CCACACATTTCATTATGAAG+TGG | + | chr5.4:62720018-62720037 | MS.gene50170:intron | 35.0% | |
| CCACTTCATAATGAAATGTG+TGG | - | chr5.4:62720021-62720040 | None:intergenic | 35.0% | |
| CTTCAAGAAACCGATATCTT+TGG | + | chr5.4:62718870-62718889 | MS.gene50170:CDS | 35.0% | |
| CTTTACATAGATTCTGGACA+CGG | - | chr5.4:62721042-62721061 | None:intergenic | 35.0% | |
| GAAGCAATTGAAGTCTTACA+CGG | - | chr5.4:62720640-62720659 | None:intergenic | 35.0% | |
| GAATATACTGACGATGACAT+TGG | + | chr5.4:62721521-62721540 | MS.gene50170:CDS | 35.0% | |
| GCTAGTATCTTTATCAACAG+TGG | + | chr5.4:62720371-62720390 | MS.gene50170:intron | 35.0% | |
| GTGTAATGTCCTACTCATTT+AGG | - | chr5.4:62720931-62720950 | None:intergenic | 35.0% | |
| TAATATGACACCGATGTATG+TGG | - | chr5.4:62720225-62720244 | None:intergenic | 35.0% | |
| TGGTATAACTTACACTCGAA+AGG | + | chr5.4:62721163-62721182 | MS.gene50170:CDS | 35.0% | |
| TGTAAGTTAATCTTCCCTGA+CGG | + | chr5.4:62719677-62719696 | MS.gene50170:intron | 35.0% | |
| TTCACATCTCCTTGAAAAAG+CGG | - | chr5.4:62720094-62720113 | None:intergenic | 35.0% | |
| TTCACCGCAATAAGAATTGT+CGG | - | chr5.4:62721135-62721154 | None:intergenic | 35.0% | |
| TTCTCTATCTCTCCTAACAA+AGG | - | chr5.4:62719320-62719339 | None:intergenic | 35.0% | |
| TTTACATAGATTCTGGACAC+GGG | - | chr5.4:62721041-62721060 | None:intergenic | 35.0% | |
| TTTATCCATGTGTGACAACT+GGG | - | chr5.4:62719997-62720016 | None:intergenic | 35.0% | |
| ! | ATCTGAGACTATCACACAAA+AGG | + | chr5.4:62719966-62719985 | MS.gene50170:intron | 35.0% |
| ! | TCTGAGACTATCACACAAAA+GGG | + | chr5.4:62719967-62719986 | MS.gene50170:intron | 35.0% |
| ! | TGTTTTGTCAGTGCTTCATA+AGG | - | chr5.4:62720136-62720155 | None:intergenic | 35.0% |
| !!! | TTTTGATTTCTTGTGGAGGA+GGG | + | chr5.4:62719861-62719880 | MS.gene50170:intron | 35.0% |
| !!! | TTTTTGATTTCTTGTGGAGG+AGG | + | chr5.4:62719860-62719879 | MS.gene50170:intron | 35.0% |
| ATATGTATGCATTCACGGTG+GGG | + | chr5.4:62721353-62721372 | MS.gene50170:intron | 40.0% | |
| CGAAACAAAGACATCGAACA+CGG | + | chr5.4:62719388-62719407 | MS.gene50170:intron | 40.0% | |
| CGTGTCCAGAATCTATGTAA+AGG | + | chr5.4:62721040-62721059 | MS.gene50170:intron | 40.0% | |
| CTATTCAACAAGCGTATAGC+TGG | - | chr5.4:62720801-62720820 | None:intergenic | 40.0% | |
| GATATGTATGCATTCACGGT+GGG | + | chr5.4:62721352-62721371 | MS.gene50170:intron | 40.0% | |
| GGTGTATTGAATGATGCAGA+GGG | + | chr5.4:62720483-62720502 | MS.gene50170:intron | 40.0% | |
| GTAAAGGATCTATTGGCAGA+AGG | + | chr5.4:62721056-62721075 | MS.gene50170:CDS | 40.0% | |
| GTAAGTTAATCTTCCCTGAC+GGG | + | chr5.4:62719678-62719697 | MS.gene50170:intron | 40.0% | |
| GTGTATTGAATGATGCAGAG+GGG | + | chr5.4:62720484-62720503 | MS.gene50170:intron | 40.0% | |
| GTGTCATATTAGTGTCTGAC+CGG | + | chr5.4:62720234-62720253 | MS.gene50170:intron | 40.0% | |
| TATACTGACGATGACATTGG+AGG | + | chr5.4:62721524-62721543 | MS.gene50170:CDS | 40.0% | |
| TATGATGAGTCACTCGTGTT+TGG | - | chr5.4:62720159-62720178 | None:intergenic | 40.0% | |
| TATTGTGGAGCAGTTGGAAA+AGG | - | chr5.4:62720286-62720305 | None:intergenic | 40.0% | |
| TGATATGTATGCATTCACGG+TGG | + | chr5.4:62721351-62721370 | MS.gene50170:intron | 40.0% | |
| TGGTGTATTGAATGATGCAG+AGG | + | chr5.4:62720482-62720501 | MS.gene50170:intron | 40.0% | |
| TGTAGTTCATGATTCAACGG+TGG | + | chr5.4:62719626-62719645 | MS.gene50170:intron | 40.0% | |
| TGTATTGAATGATGCAGAGG+GGG | + | chr5.4:62720485-62720504 | MS.gene50170:intron | 40.0% | |
| TGTTTCGTTGACCAAACACA+AGG | - | chr5.4:62719375-62719394 | None:intergenic | 40.0% | |
| TTATCCATGTGTGACAACTG+GGG | - | chr5.4:62719996-62720015 | None:intergenic | 40.0% | |
| ! | AGTGCTTTTGGTGAAAGCAA+AGG | + | chr5.4:62718845-62718864 | MS.gene50170:CDS | 40.0% |
| ! | GTGCTTTTGGTGAAAGCAAA+GGG | + | chr5.4:62718846-62718865 | MS.gene50170:CDS | 40.0% |
| ! | TTCCGATGATTTTGTTGGTC+AGG | + | chr5.4:62720614-62720633 | MS.gene50170:CDS | 40.0% |
| ! | TTTGATTTCTTGTGGAGGAG+GGG | + | chr5.4:62719862-62719881 | MS.gene50170:intron | 40.0% |
| !! | TTCTTTGTTGATAGCTCGCA+TGG | + | chr5.4:62719085-62719104 | MS.gene50170:intron | 40.0% |
| !! | TTGAAAAAGCGGACTACACA+CGG | - | chr5.4:62720083-62720102 | None:intergenic | 40.0% |
| AAGGAACACCTATGTAGCAC+CGG | - | chr5.4:62720256-62720275 | None:intergenic | 45.0% | |
| CAACGGTGGAACCACTAAAT+TGG | + | chr5.4:62719640-62719659 | MS.gene50170:intron | 45.0% | |
| CACAAGAGCAGTGTAGTTCA+TGG | + | chr5.4:62719143-62719162 | MS.gene50170:CDS | 45.0% | |
| CGAGCCGACAATTCTTATTG+CGG | + | chr5.4:62721128-62721147 | MS.gene50170:CDS | 45.0% | |
| GAAATGTCCGAAGTGAATGG+TGG | + | chr5.4:62719535-62719554 | MS.gene50170:intron | 45.0% | |
| GGCCTGACCAACAAAATCAT+CGG | - | chr5.4:62720619-62720638 | None:intergenic | 45.0% | |
| GTATTCAGAGTGGAATACCC+TGG | + | chr5.4:62720537-62720556 | MS.gene50170:CDS | 45.0% | |
| GTATTGAATGATGCAGAGGG+GGG | + | chr5.4:62720486-62720505 | MS.gene50170:intron | 45.0% | |
| TATGTATGCATTCACGGTGG+GGG | + | chr5.4:62721354-62721373 | MS.gene50170:intron | 45.0% | |
| TATTGCGGTGAACTCGAAGT+TGG | + | chr5.4:62721143-62721162 | MS.gene50170:CDS | 45.0% | |
| TTGATTTCTTGTGGAGGAGG+GGG | + | chr5.4:62719863-62719882 | MS.gene50170:intron | 45.0% | |
| ! | TGTATTGGTCACCTGATCCA+GGG | - | chr5.4:62720557-62720576 | None:intergenic | 45.0% |
| ! | TTGTATTGGTCACCTGATCC+AGG | - | chr5.4:62720558-62720577 | None:intergenic | 45.0% |
| !! | TGAAAAAGCGGACTACACAC+GGG | - | chr5.4:62720082-62720101 | None:intergenic | 45.0% |
| !!! | GTGTGTAGTCCGCTTTTTCA+AGG | + | chr5.4:62720082-62720101 | MS.gene50170:intron | 45.0% |
| !!! | TGGGTTCATGGAAGTGCTTT+TGG | + | chr5.4:62718833-62718852 | MS.gene50170:CDS | 45.0% |
| !!! | AACTATTTTTTTATTTATTA+AGG | + | chr5.4:62719905-62719924 | MS.gene50170:intron | 5.0% |
| ACGATGACATTGGAGGATGG+AGG | + | chr5.4:62721531-62721550 | MS.gene50170:CDS | 50.0% | |
| ACTAATCCGTGTACCCGTCA+GGG | - | chr5.4:62719694-62719713 | None:intergenic | 50.0% | |
| ACTACTCGACATCGGCACAT+GGG | + | chr5.4:62719492-62719511 | MS.gene50170:intron | 50.0% | |
| AGAGTGGAATACCCTGGATC+AGG | + | chr5.4:62720543-62720562 | MS.gene50170:CDS | 50.0% | |
| CGAACCACACTATACTTGCG+AGG | - | chr5.4:62721110-62721129 | None:intergenic | 50.0% | |
| CGATGACATTGGAGGATGGA+GGG | + | chr5.4:62721532-62721551 | MS.gene50170:CDS | 50.0% | |
| CTGACGATGACATTGGAGGA+TGG | + | chr5.4:62721528-62721547 | MS.gene50170:CDS | 50.0% | |
| GGATGCAGTTCATCTGTGAG+TGG | + | chr5.4:62719805-62719824 | MS.gene50170:intron | 50.0% | |
| GTGCTGTCACTACTCGACAT+CGG | + | chr5.4:62719484-62719503 | MS.gene50170:intron | 50.0% | |
| GTTACCCCAGTTGTCACACA+TGG | + | chr5.4:62719989-62720008 | MS.gene50170:intron | 50.0% | |
| TACTAATCCGTGTACCCGTC+AGG | - | chr5.4:62719695-62719714 | None:intergenic | 50.0% | |
| TCGTCCTCGCAAGTATAGTG+TGG | + | chr5.4:62721103-62721122 | MS.gene50170:CDS | 50.0% | |
| TGGCAGAAGGAGCAGAGAAT+GGG | + | chr5.4:62721069-62721088 | MS.gene50170:CDS | 50.0% | |
| TTGGCAGAAGGAGCAGAGAA+TGG | + | chr5.4:62721068-62721087 | MS.gene50170:CDS | 50.0% | |
| ! | AATCTTCCCTGACGGGTACA+CGG | + | chr5.4:62719685-62719704 | MS.gene50170:intron | 50.0% |
| CACTACTCGACATCGGCACA+TGG | + | chr5.4:62719491-62719510 | MS.gene50170:intron | 55.0% | |
| !! | AAAAGCGGACTACACACGGG+AGG | - | chr5.4:62720079-62720098 | None:intergenic | 55.0% |
| !! | AAAGCGGACTACACACGGGA+GGG | - | chr5.4:62720078-62720097 | None:intergenic | 55.0% |
| !! | GTGTCTGACCGGTGCTACAT+AGG | + | chr5.4:62720245-62720264 | MS.gene50170:intron | 55.0% |
| ATGATGCAGAGGGGGGTAGC+AGG | + | chr5.4:62720493-62720512 | MS.gene50170:intron | 60.0% | |
| !! | AAGCGGACTACACACGGGAG+GGG | - | chr5.4:62720077-62720096 | None:intergenic | 60.0% |
| ! | TCACGGTGGGGGCGCATGTT+TGG | + | chr5.4:62721365-62721384 | MS.gene50170:intron | 65.0% |
| !! | AGCGGACTACACACGGGAGG+GGG | - | chr5.4:62720076-62720095 | None:intergenic | 65.0% |
| AGGGGGGTAGCAGGCCGGTA+TGG | + | chr5.4:62720502-62720521 | MS.gene50170:CDS | 70.0% | |
| TGCAGAGGGGGGTAGCAGGC+CGG | + | chr5.4:62720497-62720516 | MS.gene50170:intron | 70.0% | |
| ! | GCGGACTACACACGGGAGGG+GGG | - | chr5.4:62720075-62720094 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 62718825 | 62721568 | 62718825 | ID=MS.gene50170 |
| chr5.4 | mRNA | 62718825 | 62721568 | 62718825 | ID=MS.gene50170.t1;Parent=MS.gene50170 |
| chr5.4 | exon | 62718825 | 62718891 | 62718825 | ID=MS.gene50170.t1.exon1;Parent=MS.gene50170.t1 |
| chr5.4 | CDS | 62718825 | 62718891 | 62718825 | ID=cds.MS.gene50170.t1;Parent=MS.gene50170.t1 |
| chr5.4 | exon | 62719099 | 62719164 | 62719099 | ID=MS.gene50170.t1.exon2;Parent=MS.gene50170.t1 |
| chr5.4 | CDS | 62719099 | 62719164 | 62719099 | ID=cds.MS.gene50170.t1;Parent=MS.gene50170.t1 |
| chr5.4 | exon | 62720502 | 62720640 | 62720502 | ID=MS.gene50170.t1.exon3;Parent=MS.gene50170.t1 |
| chr5.4 | CDS | 62720502 | 62720640 | 62720502 | ID=cds.MS.gene50170.t1;Parent=MS.gene50170.t1 |
| chr5.4 | exon | 62721049 | 62721184 | 62721049 | ID=MS.gene50170.t1.exon4;Parent=MS.gene50170.t1 |
| chr5.4 | CDS | 62721049 | 62721184 | 62721049 | ID=cds.MS.gene50170.t1;Parent=MS.gene50170.t1 |
| chr5.4 | exon | 62721515 | 62721568 | 62721515 | ID=MS.gene50170.t1.exon5;Parent=MS.gene50170.t1 |
| chr5.4 | CDS | 62721515 | 62721568 | 62721515 | ID=cds.MS.gene50170.t1;Parent=MS.gene50170.t1 |
| Gene Sequence |
| Protein sequence |
