Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50510.t1 | XP_013449771.1 | 90 | 529 | 51 | 2 | 1 | 529 | 1 | 527 | 2.50E-272 | 947.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50510.t1 | Q9C8Y7 | 24.1 | 402 | 228 | 18 | 13 | 376 | 33 | 395 | 2.2e-06 | 55.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50510.t1 | A0A072U269 | 90.0 | 529 | 51 | 2 | 1 | 529 | 1 | 527 | 1.8e-272 | 947.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051332 | MS.gene50510 | 0.804704 | 1.90E-49 | -1.69E-46 |
MS.gene051800 | MS.gene50510 | 0.804109 | 2.53E-49 | -1.69E-46 |
MS.gene05414 | MS.gene50510 | 0.800734 | 1.25E-48 | -1.69E-46 |
MS.gene054775 | MS.gene50510 | 0.800894 | 1.16E-48 | -1.69E-46 |
MS.gene054875 | MS.gene50510 | 0.855744 | 5.13E-62 | -1.69E-46 |
MS.gene055926 | MS.gene50510 | 0.820016 | 8.57E-53 | -1.69E-46 |
MS.gene058979 | MS.gene50510 | 0.816721 | 4.78E-52 | -1.69E-46 |
MS.gene059439 | MS.gene50510 | 0.816602 | 5.08E-52 | -1.69E-46 |
MS.gene059625 | MS.gene50510 | 0.819807 | 9.57E-53 | -1.69E-46 |
MS.gene06052 | MS.gene50510 | 0.804565 | 2.03E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50510.t1 | MTR_7g095350 | 89.981 | 529 | 51 | 2 | 1 | 529 | 9 | 535 | 0.0 | 966 |
MS.gene50510.t1 | MTR_7g095350 | 89.981 | 529 | 51 | 2 | 1 | 529 | 1 | 527 | 0.0 | 965 |
MS.gene50510.t1 | MTR_7g095350 | 90.575 | 435 | 40 | 1 | 1 | 435 | 9 | 442 | 0.0 | 804 |
MS.gene50510.t1 | MTR_7g095350 | 90.575 | 435 | 40 | 1 | 1 | 435 | 1 | 434 | 0.0 | 803 |
MS.gene50510.t1 | MTR_7g095350 | 90.654 | 428 | 39 | 1 | 1 | 428 | 1 | 427 | 0.0 | 792 |
MS.gene50510.t1 | MTR_6g013380 | 60.478 | 544 | 193 | 8 | 1 | 532 | 62 | 595 | 0.0 | 632 |
MS.gene50510.t1 | MTR_6g013240 | 60.478 | 544 | 193 | 8 | 1 | 532 | 67 | 600 | 0.0 | 631 |
MS.gene50510.t1 | MTR_3g009910 | 57.398 | 561 | 205 | 8 | 1 | 532 | 3 | 558 | 0.0 | 610 |
MS.gene50510.t1 | MTR_7g095560 | 55.893 | 560 | 214 | 7 | 1 | 532 | 3 | 557 | 0.0 | 587 |
MS.gene50510.t1 | MTR_7g087840 | 57.336 | 518 | 207 | 7 | 13 | 518 | 10 | 525 | 0.0 | 546 |
MS.gene50510.t1 | MTR_7g089610 | 57.624 | 505 | 187 | 9 | 1 | 486 | 24 | 520 | 0.0 | 525 |
MS.gene50510.t1 | MTR_7g092650 | 62.615 | 436 | 156 | 6 | 1 | 432 | 27 | 459 | 4.10e-180 | 514 |
MS.gene50510.t1 | MTR_3g009910 | 57.395 | 453 | 183 | 5 | 1 | 448 | 3 | 450 | 9.59e-174 | 498 |
MS.gene50510.t1 | MTR_7g087040 | 58.599 | 471 | 186 | 6 | 13 | 476 | 10 | 478 | 5.92e-171 | 509 |
MS.gene50510.t1 | MTR_7g087040 | 56.948 | 367 | 149 | 4 | 159 | 518 | 513 | 877 | 4.21e-124 | 387 |
MS.gene50510.t1 | MTR_7g089620 | 58.057 | 453 | 171 | 6 | 1 | 436 | 1 | 451 | 1.14e-164 | 475 |
MS.gene50510.t1 | MTR_7g089570 | 58.352 | 449 | 167 | 8 | 1 | 436 | 30 | 471 | 1.05e-161 | 468 |
MS.gene50510.t1 | MTR_6g071510 | 51.081 | 509 | 207 | 8 | 13 | 518 | 10 | 479 | 1.89e-146 | 439 |
MS.gene50510.t1 | MTR_2g032920 | 55.325 | 385 | 132 | 4 | 60 | 436 | 4 | 356 | 5.21e-139 | 406 |
MS.gene50510.t1 | MTR_0176s0050 | 55.937 | 379 | 158 | 4 | 147 | 518 | 2 | 378 | 7.12e-131 | 388 |
MS.gene50510.t1 | MTR_0176s0050 | 56.417 | 374 | 158 | 4 | 147 | 518 | 2 | 372 | 9.03e-131 | 388 |
MS.gene50510.t1 | MTR_6g471290 | 54.869 | 421 | 166 | 5 | 13 | 430 | 29 | 428 | 9.28e-131 | 404 |
MS.gene50510.t1 | MTR_6g471290 | 53.191 | 235 | 91 | 3 | 303 | 518 | 667 | 901 | 4.19e-68 | 236 |
MS.gene50510.t1 | MTR_6g471290 | 47.826 | 276 | 133 | 4 | 13 | 285 | 497 | 764 | 3.02e-61 | 217 |
MS.gene50510.t1 | MTR_0176s0050 | 54.684 | 395 | 167 | 6 | 134 | 518 | 55 | 447 | 1.71e-129 | 387 |
MS.gene50510.t1 | MTR_0176s0050 | 32.515 | 326 | 155 | 8 | 13 | 285 | 10 | 323 | 1.43e-26 | 113 |
MS.gene50510.t1 | MTR_7g105510 | 60.802 | 324 | 107 | 4 | 1 | 304 | 14 | 337 | 2.86e-124 | 368 |
MS.gene50510.t1 | MTR_7g105980 | 60.870 | 253 | 92 | 3 | 269 | 514 | 65 | 317 | 1.02e-99 | 305 |
MS.gene50510.t1 | MTR_7g105980 | 33.491 | 212 | 87 | 4 | 53 | 261 | 15 | 175 | 1.14e-23 | 102 |
MS.gene50510.t1 | MTR_7g105980 | 60.729 | 247 | 90 | 3 | 275 | 514 | 1 | 247 | 3.26e-97 | 296 |
MS.gene50510.t1 | MTR_7g095310 | 59.111 | 225 | 75 | 5 | 119 | 326 | 1 | 225 | 4.03e-73 | 232 |
MS.gene50510.t1 | MTR_2g064400 | 44.884 | 303 | 139 | 5 | 1 | 284 | 1 | 294 | 2.59e-69 | 231 |
MS.gene50510.t1 | MTR_2g064400 | 33.444 | 302 | 172 | 7 | 234 | 513 | 133 | 427 | 8.57e-34 | 134 |
MS.gene50510.t1 | MTR_6g471300 | 58.491 | 212 | 84 | 3 | 232 | 441 | 23 | 232 | 3.24e-68 | 219 |
MS.gene50510.t1 | MTR_7g095340 | 62.295 | 183 | 59 | 5 | 2 | 179 | 3 | 180 | 1.49e-65 | 216 |
MS.gene50510.t1 | MTR_7g095390 | 60.571 | 175 | 60 | 4 | 3 | 171 | 2 | 173 | 6.69e-57 | 188 |
MS.gene50510.t1 | MTR_5g024120 | 42.929 | 198 | 66 | 3 | 319 | 514 | 138 | 290 | 1.11e-41 | 153 |
MS.gene50510.t1 | MTR_5g024120 | 63.478 | 115 | 37 | 3 | 1 | 114 | 1 | 111 | 7.95e-36 | 137 |
MS.gene50510.t1 | MTR_7g111110 | 64.368 | 87 | 26 | 1 | 13 | 99 | 10 | 91 | 1.11e-30 | 115 |
MS.gene50510.t1 | MTR_7g114090 | 30.921 | 304 | 175 | 9 | 7 | 285 | 1 | 294 | 3.94e-28 | 117 |
MS.gene50510.t1 | MTR_7g116250 | 34.764 | 233 | 131 | 5 | 7 | 218 | 1 | 233 | 4.99e-28 | 113 |
MS.gene50510.t1 | MTR_7g105520 | 55.000 | 100 | 44 | 1 | 387 | 485 | 2 | 101 | 9.05e-28 | 107 |
MS.gene50510.t1 | MTR_7g116580 | 28.990 | 307 | 181 | 10 | 7 | 281 | 1 | 302 | 3.64e-25 | 108 |
MS.gene50510.t1 | MTR_7g116580 | 26.316 | 247 | 142 | 9 | 292 | 510 | 187 | 421 | 3.83e-13 | 72.0 |
MS.gene50510.t1 | MTR_7g092110 | 53.086 | 81 | 34 | 2 | 433 | 512 | 83 | 160 | 7.34e-19 | 85.1 |
MS.gene50510.t1 | MTR_7g092110 | 70.000 | 50 | 11 | 2 | 1 | 50 | 25 | 70 | 1.68e-13 | 69.7 |
MS.gene50510.t1 | MTR_2g032940 | 75.000 | 48 | 11 | 1 | 1 | 48 | 1 | 47 | 8.47e-16 | 72.0 |
MS.gene50510.t1 | MTR_1g021820 | 29.167 | 216 | 133 | 5 | 14 | 229 | 33 | 228 | 2.41e-13 | 72.4 |
MS.gene50510.t1 | MTR_1g011410 | 28.700 | 223 | 138 | 7 | 14 | 236 | 320 | 521 | 5.35e-13 | 72.0 |
MS.gene50510.t1 | MTR_4g057860 | 49.315 | 73 | 31 | 2 | 466 | 532 | 1 | 73 | 2.18e-12 | 63.9 |
MS.gene50510.t1 | MTR_1g016310 | 25.170 | 294 | 198 | 8 | 14 | 303 | 25 | 300 | 2.97e-12 | 68.6 |
MS.gene50510.t1 | MTR_1g013630 | 30.732 | 205 | 118 | 7 | 14 | 213 | 44 | 229 | 4.11e-12 | 68.2 |
MS.gene50510.t1 | MTR_0049s0110 | 27.126 | 247 | 141 | 10 | 13 | 254 | 12 | 224 | 4.55e-12 | 67.0 |
MS.gene50510.t1 | MTR_5g040850 | 26.506 | 249 | 158 | 7 | 14 | 256 | 12 | 241 | 4.82e-12 | 68.6 |
MS.gene50510.t1 | MTR_1g016310 | 25.170 | 294 | 198 | 8 | 14 | 303 | 25 | 300 | 6.96e-12 | 67.8 |
MS.gene50510.t1 | MTR_0049s0110 | 27.751 | 209 | 121 | 8 | 13 | 216 | 12 | 195 | 7.80e-12 | 67.0 |
MS.gene50510.t1 | MTR_0049s0110 | 27.751 | 209 | 121 | 8 | 13 | 216 | 12 | 195 | 9.19e-12 | 67.4 |
MS.gene50510.t1 | MTR_0049s0110 | 27.751 | 209 | 121 | 8 | 13 | 216 | 12 | 195 | 1.26e-11 | 66.6 |
MS.gene50510.t1 | MTR_2g047848 | 24.306 | 288 | 180 | 8 | 14 | 282 | 12 | 280 | 1.98e-11 | 66.6 |
MS.gene50510.t1 | MTR_2g070780 | 27.675 | 271 | 168 | 9 | 14 | 262 | 22 | 286 | 2.47e-11 | 65.9 |
MS.gene50510.t1 | MTR_7g095660 | 52.830 | 53 | 23 | 1 | 462 | 514 | 18 | 68 | 2.99e-11 | 62.0 |
MS.gene50510.t1 | MTR_1g016340 | 27.007 | 274 | 179 | 9 | 14 | 282 | 20 | 277 | 4.76e-11 | 65.5 |
MS.gene50510.t1 | MTR_1g016340 | 27.007 | 274 | 179 | 9 | 14 | 282 | 25 | 282 | 5.46e-11 | 65.1 |
MS.gene50510.t1 | MTR_2g047872 | 26.126 | 222 | 143 | 5 | 14 | 234 | 28 | 229 | 1.00e-10 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 71 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTAATTGCGGGGTTGAAAT+TGG | 0.183172 | 7.3:+15793464 | MS.gene50510:CDS |
ATCATAATCTCGACTACTTT+TGG | 0.207236 | 7.3:+15794216 | MS.gene50510:CDS |
TTGAAACCAGATAAATTTAT+AGG | 0.212278 | 7.3:-15793281 | None:intergenic |
TATCATCCAACAATTCTTAA+AGG | 0.267997 | 7.3:-15793747 | None:intergenic |
AATTGAACTCACAATCATTA+AGG | 0.276353 | 7.3:-15793397 | None:intergenic |
ATAGCACCTATAAATTTATC+TGG | 0.311525 | 7.3:+15793275 | MS.gene50510:CDS |
TTAATTGCGGGGTTGAAATT+GGG | 0.320014 | 7.3:+15793465 | MS.gene50510:CDS |
TGTAAAGCAGGATTTGCTTC+AGG | 0.326741 | 7.3:+15793337 | MS.gene50510:CDS |
ATGATGGCATGTCTCCTTAT+AGG | 0.351286 | 7.3:+15793828 | MS.gene50510:CDS |
CTCTCATCCTTTGAATATAG+TGG | 0.356872 | 7.3:+15793872 | MS.gene50510:CDS |
ATTTAAACATTGTTAATTGC+GGG | 0.376208 | 7.3:+15793453 | MS.gene50510:CDS |
ATTGAAAATTCACATATGAT+TGG | 0.392710 | 7.3:+15795464 | MS.gene50510:CDS |
TCACTATGTTGATTACCTAA+TGG | 0.396330 | 7.3:-15793080 | None:intergenic |
TGGACTCCATGAATGTATTT+CGG | 0.410803 | 7.3:+15793673 | MS.gene50510:CDS |
GCATCAATAGACATCCTATA+AGG | 0.425432 | 7.3:-15793842 | None:intergenic |
CCATTCATGAAGCCATCGTT+TGG | 0.427804 | 7.3:-15792874 | None:intergenic |
GAGATTTATGTTGTAAAGAG+TGG | 0.437990 | 7.3:-15796307 | None:intergenic |
AGAGAAATTAGCAGAGGTAT+TGG | 0.441283 | 7.3:+15794142 | MS.gene50510:CDS |
ATTGAACTCACAATCATTAA+GGG | 0.446724 | 7.3:-15793396 | None:intergenic |
AAATTTAGAGCTATTTATTG+AGG | 0.448634 | 7.3:+15794184 | MS.gene50510:CDS |
TAATTGCGGGGTTGAAATTG+GGG | 0.450176 | 7.3:+15793466 | MS.gene50510:CDS |
ATCGGAATTCGTCACAAGAA+TGG | 0.456875 | 7.3:+15793001 | MS.gene50510:CDS |
TCGTAAAGTCTTCATGATAT+AGG | 0.457011 | 7.3:-15796336 | None:intergenic |
ACGTCACCTTTAAGAATTGT+TGG | 0.460869 | 7.3:+15793741 | MS.gene50510:CDS |
TGTTGTCCGAAATACATTCA+TGG | 0.461388 | 7.3:-15793679 | None:intergenic |
CCAAACGATGGCTTCATGAA+TGG | 0.461815 | 7.3:+15792874 | MS.gene50510:CDS |
GTAAAGCAGGATTTGCTTCA+GGG | 0.464723 | 7.3:+15793338 | MS.gene50510:CDS |
ATGCTCAAATGACGCAGCTT+CGG | 0.472890 | 7.3:-15793791 | None:intergenic |
TCTACCTCTGTAGCTAAACT+TGG | 0.474315 | 7.3:-15793591 | None:intergenic |
ATATAAAGTAAGCTTCCATA+TGG | 0.474931 | 7.3:-15793986 | None:intergenic |
TATTACAGTCAAACATGTTA+CGG | 0.483395 | 7.3:-15792926 | None:intergenic |
ATAATTGATTGTAGCTATGA+TGG | 0.491309 | 7.3:+15793812 | MS.gene50510:CDS |
ATATTCGATATAACACAATC+TGG | 0.493160 | 7.3:-15792804 | None:intergenic |
GCATCTTGTTGTTGTAAAGC+AGG | 0.493856 | 7.3:+15793325 | MS.gene50510:CDS |
AGATTTATGTTGTAAAGAGT+GGG | 0.495759 | 7.3:-15796306 | None:intergenic |
AGTCTAAAGACAAATTTGTA+TGG | 0.496604 | 7.3:-15793200 | None:intergenic |
TAAGCTTCCATATGGATGAA+TGG | 0.498427 | 7.3:-15793978 | None:intergenic |
AATTTAGAGCTATTTATTGA+GGG | 0.499343 | 7.3:+15794185 | MS.gene50510:CDS |
CATTTAAACATTGTTAATTG+CGG | 0.506294 | 7.3:+15793452 | MS.gene50510:CDS |
GGCAAAAGGAGTTTCTTCTC+TGG | 0.508809 | 7.3:-15793957 | None:intergenic |
TTCTGAATGTCTCCAACTTG+AGG | 0.511702 | 7.3:+15793718 | MS.gene50510:CDS |
CCATATGGATGAATGGCAAA+AGG | 0.514809 | 7.3:-15793971 | None:intergenic |
TATGATTATGAGCACTTCAC+AGG | 0.515051 | 7.3:+15794021 | MS.gene50510:CDS |
TAAAGGTGACGTCCTCAAGT+TGG | 0.541407 | 7.3:-15793730 | None:intergenic |
AGGAAAAGAAGAGAATATGC+AGG | 0.544808 | 7.3:+15795494 | MS.gene50510:CDS |
TAATGCTCCAAGGTTATCAA+AGG | 0.545010 | 7.3:+15793916 | MS.gene50510:CDS |
TCAATTGAATATTCTTGCAA+TGG | 0.545122 | 7.3:+15793527 | MS.gene50510:CDS |
TGTTCATTGAGTGTACTTCA+CGG | 0.547219 | 7.3:-15793550 | None:intergenic |
GTCTACAAGATGGATGCAGC+TGG | 0.548530 | 7.3:-15793369 | None:intergenic |
CAATTGATGCTGAAATATCA+AGG | 0.552746 | 7.3:+15793026 | MS.gene50510:CDS |
CGTGTAACCACTATATTCAA+AGG | 0.556800 | 7.3:-15793879 | None:intergenic |
GTGACAACAATTGTGTTCGA+TGG | 0.559994 | 7.3:+15793653 | MS.gene50510:CDS |
CATGATCCGTTCACTTCGAG+TGG | 0.563184 | 7.3:+15793052 | MS.gene50510:CDS |
TTGAAATATGTAGAGTTGCA+TGG | 0.568499 | 7.3:+15795533 | MS.gene50510:CDS |
ATAACACAATCTGGTAACTC+AGG | 0.575006 | 7.3:-15792795 | None:intergenic |
TATTCTCTGTTAATGCTCCA+AGG | 0.578390 | 7.3:+15793906 | MS.gene50510:CDS |
TAAGGGTGAAGTCTACAAGA+TGG | 0.582003 | 7.3:-15793379 | None:intergenic |
CACATATGATTGGACTTCAG+AGG | 0.586014 | 7.3:+15795474 | MS.gene50510:CDS |
TGTTACGGAGATCAAAATTG+AGG | 0.594580 | 7.3:-15792911 | None:intergenic |
TTTAAACATTGTTAATTGCG+GGG | 0.594670 | 7.3:+15793454 | MS.gene50510:CDS |
TTGCGGGGTTGAAATTGGGG+AGG | 0.603541 | 7.3:+15793469 | MS.gene50510:CDS |
GAAAATCCACTCGAAGTGAA+CGG | 0.606801 | 7.3:-15793058 | None:intergenic |
TTATCCAAGTTTAGCTACAG+AGG | 0.607441 | 7.3:+15793587 | MS.gene50510:CDS |
AGACATTCAGAAAACAAATG+AGG | 0.612064 | 7.3:-15793707 | None:intergenic |
GATTTATGTTGTAAAGAGTG+GGG | 0.615322 | 7.3:-15796305 | None:intergenic |
ACAGGTAGAGAAATTAGCAG+AGG | 0.648016 | 7.3:+15794136 | MS.gene50510:intron |
CAAGTGTATTATCCAAACGA+TGG | 0.659474 | 7.3:+15792862 | MS.gene50510:CDS |
TTGAATATAGTGGTTACACG+AGG | 0.667234 | 7.3:+15793882 | MS.gene50510:CDS |
AGTACACTCAATGAACATTG+AGG | 0.679605 | 7.3:+15793556 | MS.gene50510:CDS |
ATGTTTAAATGAAACAACGT+CGG | 0.680399 | 7.3:-15793440 | None:intergenic |
TGAATATAGTGGTTACACGA+GGG | 0.696995 | 7.3:+15793883 | MS.gene50510:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTACTTTTAGAAATAAAT+AGG | + | chr7.3:15794519-15794538 | MS.gene50510:intron | 10.0% |
!! | CTTTCAGTTAAATTATATTA+AGG | - | chr7.3:15794463-15794482 | None:intergenic | 15.0% |
!! | TATTAAGGAAAATAAATTTC+CGG | - | chr7.3:15794448-15794467 | None:intergenic | 15.0% |
!!! | AGAACTTGTTTATTATATTA+CGG | - | chr7.3:15795331-15795350 | None:intergenic | 15.0% |
!! | AAACGTTTGAAAAAAATTAG+TGG | + | chr7.3:15795073-15795092 | MS.gene50510:intron | 20.0% |
!! | AAATTAATTCTGATTTCAAC+CGG | + | chr7.3:15794426-15794445 | MS.gene50510:intron | 20.0% |
!! | ACAATTACCTTTATTGTTAA+TGG | + | chr7.3:15794108-15794127 | MS.gene50510:intron | 20.0% |
!! | ATTACTTGACAAAAGAAAAT+TGG | + | chr7.3:15794797-15794816 | MS.gene50510:intron | 20.0% |
!! | ATTGAAAATTCACATATGAT+TGG | + | chr7.3:15795464-15795483 | MS.gene50510:CDS | 20.0% |
!! | ATTTAAACATTGTTAATTGC+GGG | + | chr7.3:15793453-15793472 | MS.gene50510:CDS | 20.0% |
!! | CATTTAAACATTGTTAATTG+CGG | + | chr7.3:15793452-15793471 | MS.gene50510:CDS | 20.0% |
!! | TAACATTGTATAGTTTACTT+TGG | + | chr7.3:15795812-15795831 | MS.gene50510:intron | 20.0% |
!! | TCTCTTGACAAAATTTATAT+GGG | + | chr7.3:15795638-15795657 | MS.gene50510:intron | 20.0% |
!! | TTCTCTTGACAAAATTTATA+TGG | + | chr7.3:15795637-15795656 | MS.gene50510:intron | 20.0% |
!! | TTGAAACCAGATAAATTTAT+AGG | - | chr7.3:15793284-15793303 | None:intergenic | 20.0% |
!!! | AAATTTAGAGCTATTTATTG+AGG | + | chr7.3:15794184-15794203 | MS.gene50510:CDS | 20.0% |
!!! | AATTTAGAGCTATTTATTGA+GGG | + | chr7.3:15794185-15794204 | MS.gene50510:CDS | 20.0% |
!!! | AGAGAATTTTCTAAACATAT+TGG | + | chr7.3:15793611-15793630 | MS.gene50510:CDS | 20.0% |
!!! | AGTTTTTAAAAGGTTTCAAT+CGG | + | chr7.3:15792983-15793002 | MS.gene50510:CDS | 20.0% |
!!! | ATAAAGGTAATTGTTATTTG+TGG | - | chr7.3:15794102-15794121 | None:intergenic | 20.0% |
!!! | ATTGACAAAATGATTTTCAA+AGG | + | chr7.3:15793107-15793126 | MS.gene50510:CDS | 20.0% |
!!! | GAGAATTTTCTAAACATATT+GGG | + | chr7.3:15793612-15793631 | MS.gene50510:CDS | 20.0% |
!!! | TAAAGGTAATTGTTATTTGT+GGG | - | chr7.3:15794101-15794120 | None:intergenic | 20.0% |
!!! | TTCTACATTAAATAGTGTTT+TGG | - | chr7.3:15795959-15795978 | None:intergenic | 20.0% |
!!! | TTTTTATACTTGTTGCTATA+TGG | - | chr7.3:15794552-15794571 | None:intergenic | 20.0% |
! | AAGAATAAATGAGGTTTATG+TGG | - | chr7.3:15794754-15794773 | None:intergenic | 25.0% |
! | AATTGAACTCACAATCATTA+AGG | - | chr7.3:15793400-15793419 | None:intergenic | 25.0% |
! | AGATTTATGTTGTAAAGAGT+GGG | - | chr7.3:15796309-15796328 | None:intergenic | 25.0% |
! | AGTCTAAAGACAAATTTGTA+TGG | - | chr7.3:15793203-15793222 | None:intergenic | 25.0% |
! | ATAATGCTTACACAAATAAC+AGG | - | chr7.3:15795273-15795292 | None:intergenic | 25.0% |
! | ATAATTGATTGTAGCTATGA+TGG | + | chr7.3:15793812-15793831 | MS.gene50510:CDS | 25.0% |
! | ATAGCACCTATAAATTTATC+TGG | + | chr7.3:15793275-15793294 | MS.gene50510:CDS | 25.0% |
! | ATATAAAGTAAGCTTCCATA+TGG | - | chr7.3:15793989-15794008 | None:intergenic | 25.0% |
! | ATATTCGATATAACACAATC+TGG | - | chr7.3:15792807-15792826 | None:intergenic | 25.0% |
! | ATGTTTAAATGAAACAACGT+CGG | - | chr7.3:15793443-15793462 | None:intergenic | 25.0% |
! | ATTGAACTCACAATCATTAA+GGG | - | chr7.3:15793399-15793418 | None:intergenic | 25.0% |
! | CATTAGTGTTATATGAATGA+TGG | + | chr7.3:15795382-15795401 | MS.gene50510:intron | 25.0% |
! | CTGCTTACATGAAAAATTAT+AGG | - | chr7.3:15794709-15794728 | None:intergenic | 25.0% |
! | GTTTACACCATTAACAATAA+AGG | - | chr7.3:15794118-15794137 | None:intergenic | 25.0% |
! | TATCATCCAACAATTCTTAA+AGG | - | chr7.3:15793750-15793769 | None:intergenic | 25.0% |
! | TATTACAGTCAAACATGTTA+CGG | - | chr7.3:15792929-15792948 | None:intergenic | 25.0% |
! | TCAATTGAATATTCTTGCAA+TGG | + | chr7.3:15793527-15793546 | MS.gene50510:CDS | 25.0% |
! | TTATTGTTAATGGTGTAAAC+AGG | + | chr7.3:15794118-15794137 | MS.gene50510:intron | 25.0% |
! | TTCACACAAAAGAATAAATG+AGG | - | chr7.3:15794763-15794782 | None:intergenic | 25.0% |
! | TTGTATAGTTTACTTTGGTT+AGG | + | chr7.3:15795817-15795836 | MS.gene50510:intron | 25.0% |
! | TTTAAACATTGTTAATTGCG+GGG | + | chr7.3:15793454-15793473 | MS.gene50510:CDS | 25.0% |
!! | ATTTTCAAAGGAATTGCTAA+GGG | + | chr7.3:15793119-15793138 | MS.gene50510:CDS | 25.0% |
!! | CTTTTCAAAGTTAAGTTTGA+AGG | + | chr7.3:15792827-15792846 | MS.gene50510:CDS | 25.0% |
!! | GTGAATTATAGTTTTCTAGA+CGG | + | chr7.3:15794380-15794399 | MS.gene50510:intron | 25.0% |
!! | TTCCAGTTTCAGTTTTTAAA+AGG | + | chr7.3:15792973-15792992 | MS.gene50510:CDS | 25.0% |
!! | TTGGATTTTAGATATTGCAA+TGG | + | chr7.3:15794235-15794254 | MS.gene50510:CDS | 25.0% |
!! | TTGTCAGTTAACAATTTTGT+AGG | + | chr7.3:15795754-15795773 | MS.gene50510:intron | 25.0% |
!!! | AAATTGATTTTTGACCGAAT+TGG | + | chr7.3:15795892-15795911 | MS.gene50510:intron | 25.0% |
!!! | AACCTTTTAAAAACTGAAAC+TGG | - | chr7.3:15792978-15792997 | None:intergenic | 25.0% |
!!! | ATAGGTTGTTCATGTTTTTT+TGG | + | chr7.3:15794314-15794333 | MS.gene50510:intron | 25.0% |
!!! | CATTTAACTCCATTTGTTAT+AGG | + | chr7.3:15794296-15794315 | MS.gene50510:intron | 25.0% |
!!! | TTTTAAAAACTGAAACTGGA+AGG | - | chr7.3:15792974-15792993 | None:intergenic | 25.0% |
AGACATTCAGAAAACAAATG+AGG | - | chr7.3:15793710-15793729 | None:intergenic | 30.0% | |
ATAGTTTACTTTGGTTAGGA+AGG | + | chr7.3:15795821-15795840 | MS.gene50510:intron | 30.0% | |
CAATTGATGCTGAAATATCA+AGG | + | chr7.3:15793026-15793045 | MS.gene50510:CDS | 30.0% | |
CATCCAAACATAAACCAATT+CGG | - | chr7.3:15795909-15795928 | None:intergenic | 30.0% | |
CATGAACAACCTATAACAAA+TGG | - | chr7.3:15794308-15794327 | None:intergenic | 30.0% | |
CTTATAGAAGTTAAGCTAGT+GGG | + | chr7.3:15795037-15795056 | MS.gene50510:intron | 30.0% | |
GAGATTTATGTTGTAAAGAG+TGG | - | chr7.3:15796310-15796329 | None:intergenic | 30.0% | |
GATTTATGTTGTAAAGAGTG+GGG | - | chr7.3:15796308-15796327 | None:intergenic | 30.0% | |
GGAACCTAATTTAACTCAAT+TGG | + | chr7.3:15794818-15794837 | MS.gene50510:intron | 30.0% | |
TATTACGGTTATATTTGTCG+AGG | - | chr7.3:15795316-15795335 | None:intergenic | 30.0% | |
TTGAAATATGTAGAGTTGCA+TGG | + | chr7.3:15795533-15795552 | MS.gene50510:CDS | 30.0% | |
! | ATCATAATCTCGACTACTTT+TGG | + | chr7.3:15794216-15794235 | MS.gene50510:CDS | 30.0% |
! | CAAAAAACCTTTGATAACCT+TGG | - | chr7.3:15793926-15793945 | None:intergenic | 30.0% |
! | GATTTTCAAAGGAATTGCTA+AGG | + | chr7.3:15793118-15793137 | MS.gene50510:CDS | 30.0% |
! | TCACTATGTTGATTACCTAA+TGG | - | chr7.3:15793083-15793102 | None:intergenic | 30.0% |
! | TCTAAACATATTGGGTTTTC+TGG | + | chr7.3:15793620-15793639 | MS.gene50510:CDS | 30.0% |
! | TTCTGGAAACAAAACCATTT+CGG | - | chr7.3:15796273-15796292 | None:intergenic | 30.0% |
!! | GAAGATAACTGATTTTGAAG+AGG | + | chr7.3:15796023-15796042 | MS.gene50510:intron | 30.0% |
!! | GCTTCAAAGATAACTGATTT+TGG | + | chr7.3:15795998-15796017 | MS.gene50510:intron | 30.0% |
!! | TCAAAGATAACTGATTTTGG+AGG | + | chr7.3:15796001-15796020 | MS.gene50510:intron | 30.0% |
!!! | CAAGGTTATCAAAGGTTTTT+TGG | + | chr7.3:15793924-15793943 | MS.gene50510:CDS | 30.0% |
AAACAAAACCATTTCGGACT+AGG | - | chr7.3:15796267-15796286 | None:intergenic | 35.0% | |
AAACGCTAAACAACAGACAT+TGG | - | chr7.3:15795687-15795706 | None:intergenic | 35.0% | |
AAAGTAGCTAGTTCGTTATG+AGG | - | chr7.3:15795013-15795032 | None:intergenic | 35.0% | |
AGGAAAAGAAGAGAATATGC+AGG | + | chr7.3:15795494-15795513 | MS.gene50510:CDS | 35.0% | |
AGTACACTCAATGAACATTG+AGG | + | chr7.3:15793556-15793575 | MS.gene50510:CDS | 35.0% | |
ATAACAATTCTTCTCTCACG+AGG | - | chr7.3:15795230-15795249 | None:intergenic | 35.0% | |
ATAACACAATCTGGTAACTC+AGG | - | chr7.3:15792798-15792817 | None:intergenic | 35.0% | |
ATGATATTACAACCCTAACG+TGG | + | chr7.3:15794864-15794883 | MS.gene50510:intron | 35.0% | |
CAAGTGTATTATCCAAACGA+TGG | + | chr7.3:15792862-15792881 | MS.gene50510:CDS | 35.0% | |
CGTGTAACCACTATATTCAA+AGG | - | chr7.3:15793882-15793901 | None:intergenic | 35.0% | |
CTCGCCAATTGAGTTAAATT+AGG | - | chr7.3:15794825-15794844 | None:intergenic | 35.0% | |
CTCTCATCCTTTGAATATAG+TGG | + | chr7.3:15793872-15793891 | MS.gene50510:CDS | 35.0% | |
GACAAAATTTATATGGGTGC+TGG | + | chr7.3:15795644-15795663 | MS.gene50510:intron | 35.0% | |
GCATCAATAGACATCCTATA+AGG | - | chr7.3:15793845-15793864 | None:intergenic | 35.0% | |
GCTTATAGAAGTTAAGCTAG+TGG | + | chr7.3:15795036-15795055 | MS.gene50510:intron | 35.0% | |
TAAATGTTGTGACCACGTTA+GGG | - | chr7.3:15794879-15794898 | None:intergenic | 35.0% | |
TAAGCTTCCATATGGATGAA+TGG | - | chr7.3:15793981-15794000 | None:intergenic | 35.0% | |
TAATGCTCCAAGGTTATCAA+AGG | + | chr7.3:15793916-15793935 | MS.gene50510:CDS | 35.0% | |
TATGATTATGAGCACTTCAC+AGG | + | chr7.3:15794021-15794040 | MS.gene50510:CDS | 35.0% | |
TATTCTCTGTTAATGCTCCA+AGG | + | chr7.3:15793906-15793925 | MS.gene50510:CDS | 35.0% | |
TCTCGAAAAACTTTCTGTGA+CGG | + | chr7.3:15794268-15794287 | MS.gene50510:CDS | 35.0% | |
TGAATATAGTGGTTACACGA+GGG | + | chr7.3:15793883-15793902 | MS.gene50510:CDS | 35.0% | |
TGGACTCCATGAATGTATTT+CGG | + | chr7.3:15793673-15793692 | MS.gene50510:CDS | 35.0% | |
TGTTACGGAGATCAAAATTG+AGG | - | chr7.3:15792914-15792933 | None:intergenic | 35.0% | |
TGTTCATTGAGTGTACTTCA+CGG | - | chr7.3:15793553-15793572 | None:intergenic | 35.0% | |
TGTTGTCCGAAATACATTCA+TGG | - | chr7.3:15793682-15793701 | None:intergenic | 35.0% | |
TTAATTGCGGGGTTGAAATT+GGG | + | chr7.3:15793465-15793484 | MS.gene50510:CDS | 35.0% | |
TTATCCAAGTTTAGCTACAG+AGG | + | chr7.3:15793587-15793606 | MS.gene50510:CDS | 35.0% | |
TTGAATATAGTGGTTACACG+AGG | + | chr7.3:15793882-15793901 | MS.gene50510:CDS | 35.0% | |
! | ACGACAAAGAATGCAGATTT+TGG | - | chr7.3:15796220-15796239 | None:intergenic | 35.0% |
! | ACGTCACCTTTAAGAATTGT+TGG | + | chr7.3:15793741-15793760 | MS.gene50510:CDS | 35.0% |
! | AGAGAAATTAGCAGAGGTAT+TGG | + | chr7.3:15794142-15794161 | MS.gene50510:CDS | 35.0% |
! | CGACAAAGAATGCAGATTTT+GGG | - | chr7.3:15796219-15796238 | None:intergenic | 35.0% |
! | TGACCGAATTGGTTTATGTT+TGG | + | chr7.3:15795903-15795922 | MS.gene50510:intron | 35.0% |
!! | TTCATGTAAGCAGTTGATAG+AGG | + | chr7.3:15794716-15794735 | MS.gene50510:intron | 35.0% |
!!! | GGTTTTGTTTCCAGAACTTT+AGG | + | chr7.3:15796277-15796296 | MS.gene50510:intron | 35.0% |
AAGAGGAGAACCAAACATGT+TGG | + | chr7.3:15796040-15796059 | MS.gene50510:intron | 40.0% | |
ACAGGTAGAGAAATTAGCAG+AGG | + | chr7.3:15794136-15794155 | MS.gene50510:intron | 40.0% | |
ATCGGAATTCGTCACAAGAA+TGG | + | chr7.3:15793001-15793020 | MS.gene50510:CDS | 40.0% | |
ATGATGGCATGTCTCCTTAT+AGG | + | chr7.3:15793828-15793847 | MS.gene50510:CDS | 40.0% | |
CACATATGATTGGACTTCAG+AGG | + | chr7.3:15795474-15795493 | MS.gene50510:CDS | 40.0% | |
CCATATGGATGAATGGCAAA+AGG | - | chr7.3:15793974-15793993 | None:intergenic | 40.0% | |
GAAAATCCACTCGAAGTGAA+CGG | - | chr7.3:15793061-15793080 | None:intergenic | 40.0% | |
GTAAATGTTGTGACCACGTT+AGG | - | chr7.3:15794880-15794899 | None:intergenic | 40.0% | |
GTGACAACAATTGTGTTCGA+TGG | + | chr7.3:15793653-15793672 | MS.gene50510:CDS | 40.0% | |
GTTAATTGCGGGGTTGAAAT+TGG | + | chr7.3:15793464-15793483 | MS.gene50510:CDS | 40.0% | |
TAAGGGTGAAGTCTACAAGA+TGG | - | chr7.3:15793382-15793401 | None:intergenic | 40.0% | |
TAATTGCGGGGTTGAAATTG+GGG | + | chr7.3:15793466-15793485 | MS.gene50510:CDS | 40.0% | |
TCTACCTCTGTAGCTAAACT+TGG | - | chr7.3:15793594-15793613 | None:intergenic | 40.0% | |
TGGATGCAATAATGCGTAAG+TGG | + | chr7.3:15795923-15795942 | MS.gene50510:intron | 40.0% | |
TTCTGAATGTCTCCAACTTG+AGG | + | chr7.3:15793718-15793737 | MS.gene50510:CDS | 40.0% | |
TTTCATCACCTAGTCCGAAA+TGG | + | chr7.3:15796256-15796275 | MS.gene50510:intron | 40.0% | |
! | ACTGAAACTGGAAGGTTTTG+TGG | - | chr7.3:15792966-15792985 | None:intergenic | 40.0% |
! | AGTTAGCTAGTCACTTGTTG+AGG | + | chr7.3:15795582-15795601 | MS.gene50510:intron | 40.0% |
! | CCTTTTGCCATTCATCCATA+TGG | + | chr7.3:15793971-15793990 | MS.gene50510:CDS | 40.0% |
! | GTAAAGCAGGATTTGCTTCA+GGG | + | chr7.3:15793338-15793357 | MS.gene50510:CDS | 40.0% |
! | TGTAAAGCAGGATTTGCTTC+AGG | + | chr7.3:15793337-15793356 | MS.gene50510:CDS | 40.0% |
!! | AGAGCTCGTTTTAACAATGG+AGG | + | chr7.3:15796064-15796083 | MS.gene50510:intron | 40.0% |
!! | CTTCGAGTGGATTTTCCATT+AGG | + | chr7.3:15793065-15793084 | MS.gene50510:CDS | 40.0% |
!! | GCATCTTGTTGTTGTAAAGC+AGG | + | chr7.3:15793325-15793344 | MS.gene50510:CDS | 40.0% |
!! | GGTAGAGCTCGTTTTAACAA+TGG | + | chr7.3:15796061-15796080 | MS.gene50510:intron | 40.0% |
!! | TAAGCAGTTGATAGAGGTCA+AGG | + | chr7.3:15794722-15794741 | MS.gene50510:intron | 40.0% |
!! | TTTATATGGGTGCTGGAAGA+TGG | + | chr7.3:15795651-15795670 | MS.gene50510:intron | 40.0% |
!!! | ATTTTGGGTTGACTCCAAAG+AGG | - | chr7.3:15796204-15796223 | None:intergenic | 40.0% |
ACGAGCTCTACCAACATGTT+TGG | - | chr7.3:15796053-15796072 | None:intergenic | 45.0% | |
ATGCTCAAATGACGCAGCTT+CGG | - | chr7.3:15793794-15793813 | None:intergenic | 45.0% | |
CCAAACGATGGCTTCATGAA+TGG | + | chr7.3:15792874-15792893 | MS.gene50510:CDS | 45.0% | |
CCATTCATGAAGCCATCGTT+TGG | - | chr7.3:15792877-15792896 | None:intergenic | 45.0% | |
GGCAAAAGGAGTTTCTTCTC+TGG | - | chr7.3:15793960-15793979 | None:intergenic | 45.0% | |
GTGCTGGAAGATGGAATAAG+GGG | + | chr7.3:15795660-15795679 | MS.gene50510:intron | 45.0% | |
TAAAGGTGACGTCCTCAAGT+TGG | - | chr7.3:15793733-15793752 | None:intergenic | 45.0% | |
TGGGGTGTAACCTAAAGTTC+TGG | - | chr7.3:15796290-15796309 | None:intergenic | 45.0% | |
! | CGGACTAGGTGATGAAACAA+TGG | - | chr7.3:15796253-15796272 | None:intergenic | 45.0% |
! | GGTGCTGGAAGATGGAATAA+GGG | + | chr7.3:15795659-15795678 | MS.gene50510:intron | 45.0% |
!!! | GATTTTTAAATTAAAAAAAA+TGG | + | chr7.3:15794954-15794973 | MS.gene50510:intron | 5.0% |
CATGATCCGTTCACTTCGAG+TGG | + | chr7.3:15793052-15793071 | MS.gene50510:CDS | 50.0% | |
GTCTACAAGATGGATGCAGC+TGG | - | chr7.3:15793372-15793391 | None:intergenic | 50.0% | |
! | GGTTGACTCCAAAGAGGTGA+TGG | - | chr7.3:15796198-15796217 | None:intergenic | 50.0% |
! | TGACTCCAAAGAGGTGATGG+TGG | - | chr7.3:15796195-15796214 | None:intergenic | 50.0% |
!! | AAAGAGGTGATGGTGGAGGA+GGG | - | chr7.3:15796188-15796207 | None:intergenic | 50.0% |
!! | GGGTGCTGGAAGATGGAATA+AGG | + | chr7.3:15795658-15795677 | MS.gene50510:intron | 50.0% |
AGGGAGAGAGGAAGAGAGAG+AGG | - | chr7.3:15796127-15796146 | None:intergenic | 55.0% | |
CTCCTCCACCATCACCTCTT+TGG | + | chr7.3:15796187-15796206 | MS.gene50510:intron | 55.0% | |
GGGAGAGAGGAAGAGAGAGA+GGG | - | chr7.3:15796126-15796145 | None:intergenic | 55.0% | |
TTGCGGGGTTGAAATTGGGG+AGG | + | chr7.3:15793469-15793488 | MS.gene50510:CDS | 55.0% | |
!! | CAAAGAGGTGATGGTGGAGG+AGG | - | chr7.3:15796189-15796208 | None:intergenic | 55.0% |
!! | CTCCAAAGAGGTGATGGTGG+AGG | - | chr7.3:15796192-15796211 | None:intergenic | 55.0% |
GAGAGAGGGAGAGAGGGAGA+GGG | - | chr7.3:15796152-15796171 | None:intergenic | 60.0% | |
GAGAGAGGGAGAGGGAGAGA+GGG | - | chr7.3:15796166-15796185 | None:intergenic | 60.0% | |
GAGAGGGAGAGAGGGAGAGA+GGG | - | chr7.3:15796158-15796177 | None:intergenic | 60.0% | |
!! | GATGGTGGAGGAGGGAGAGA+GGG | - | chr7.3:15796180-15796199 | None:intergenic | 60.0% |
!! | TGATGGTGGAGGAGGGAGAG+AGG | - | chr7.3:15796181-15796200 | None:intergenic | 60.0% |
AGGGAGAGAGGGAGAGGGAG+AGG | - | chr7.3:15796147-15796166 | None:intergenic | 65.0% | |
AGGGAGAGGGAGAGGGAGAG+AGG | - | chr7.3:15796139-15796158 | None:intergenic | 65.0% | |
GGAGAGAGGGAGAGAGGGAG+AGG | - | chr7.3:15796153-15796172 | None:intergenic | 65.0% | |
GGAGAGAGGGAGAGGGAGAG+AGG | - | chr7.3:15796145-15796164 | None:intergenic | 65.0% | |
GGAGAGGGAGAGAGGGAGAG+AGG | - | chr7.3:15796159-15796178 | None:intergenic | 65.0% | |
GGAGGAGGGAGAGAGGGAGA+GGG | - | chr7.3:15796174-15796193 | None:intergenic | 65.0% | |
GGGAGAGAGGGAGAGGGAGA+GGG | - | chr7.3:15796146-15796165 | None:intergenic | 65.0% | |
TGGAGGAGGGAGAGAGGGAG+AGG | - | chr7.3:15796175-15796194 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 15792762 | 15796347 | 15792762 | ID=MS.gene50510 |
chr7.3 | mRNA | 15792762 | 15796347 | 15792762 | ID=MS.gene50510.t1;Parent=MS.gene50510 |
chr7.3 | exon | 15792762 | 15794042 | 15792762 | ID=MS.gene50510.t1.exon1;Parent=MS.gene50510.t1 |
chr7.3 | CDS | 15792762 | 15794042 | 15792762 | ID=cds.MS.gene50510.t1;Parent=MS.gene50510.t1 |
chr7.3 | exon | 15794140 | 15794289 | 15794140 | ID=MS.gene50510.t1.exon2;Parent=MS.gene50510.t1 |
chr7.3 | CDS | 15794140 | 15794289 | 15794140 | ID=cds.MS.gene50510.t1;Parent=MS.gene50510.t1 |
chr7.3 | exon | 15795464 | 15795574 | 15795464 | ID=MS.gene50510.t1.exon3;Parent=MS.gene50510.t1 |
chr7.3 | CDS | 15795464 | 15795574 | 15795464 | ID=cds.MS.gene50510.t1;Parent=MS.gene50510.t1 |
chr7.3 | exon | 15796291 | 15796347 | 15796291 | ID=MS.gene50510.t1.exon4;Parent=MS.gene50510.t1 |
chr7.3 | CDS | 15796291 | 15796347 | 15796291 | ID=cds.MS.gene50510.t1;Parent=MS.gene50510.t1 |
Gene Sequence |
Protein sequence |