AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene50510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50510.t1 MTR_7g095350 89.981 529 51 2 1 529 9 535 0.0 966
MS.gene50510.t1 MTR_7g095350 89.981 529 51 2 1 529 1 527 0.0 965
MS.gene50510.t1 MTR_7g095350 90.575 435 40 1 1 435 9 442 0.0 804
MS.gene50510.t1 MTR_7g095350 90.575 435 40 1 1 435 1 434 0.0 803
MS.gene50510.t1 MTR_7g095350 90.654 428 39 1 1 428 1 427 0.0 792
MS.gene50510.t1 MTR_6g013380 60.478 544 193 8 1 532 62 595 0.0 632
MS.gene50510.t1 MTR_6g013240 60.478 544 193 8 1 532 67 600 0.0 631
MS.gene50510.t1 MTR_3g009910 57.398 561 205 8 1 532 3 558 0.0 610
MS.gene50510.t1 MTR_7g095560 55.893 560 214 7 1 532 3 557 0.0 587
MS.gene50510.t1 MTR_7g087840 57.336 518 207 7 13 518 10 525 0.0 546
MS.gene50510.t1 MTR_7g089610 57.624 505 187 9 1 486 24 520 0.0 525
MS.gene50510.t1 MTR_7g092650 62.615 436 156 6 1 432 27 459 4.10e-180 514
MS.gene50510.t1 MTR_3g009910 57.395 453 183 5 1 448 3 450 9.59e-174 498
MS.gene50510.t1 MTR_7g087040 58.599 471 186 6 13 476 10 478 5.92e-171 509
MS.gene50510.t1 MTR_7g087040 56.948 367 149 4 159 518 513 877 4.21e-124 387
MS.gene50510.t1 MTR_7g089620 58.057 453 171 6 1 436 1 451 1.14e-164 475
MS.gene50510.t1 MTR_7g089570 58.352 449 167 8 1 436 30 471 1.05e-161 468
MS.gene50510.t1 MTR_6g071510 51.081 509 207 8 13 518 10 479 1.89e-146 439
MS.gene50510.t1 MTR_2g032920 55.325 385 132 4 60 436 4 356 5.21e-139 406
MS.gene50510.t1 MTR_0176s0050 55.937 379 158 4 147 518 2 378 7.12e-131 388
MS.gene50510.t1 MTR_0176s0050 56.417 374 158 4 147 518 2 372 9.03e-131 388
MS.gene50510.t1 MTR_6g471290 54.869 421 166 5 13 430 29 428 9.28e-131 404
MS.gene50510.t1 MTR_6g471290 53.191 235 91 3 303 518 667 901 4.19e-68 236
MS.gene50510.t1 MTR_6g471290 47.826 276 133 4 13 285 497 764 3.02e-61 217
MS.gene50510.t1 MTR_0176s0050 54.684 395 167 6 134 518 55 447 1.71e-129 387
MS.gene50510.t1 MTR_0176s0050 32.515 326 155 8 13 285 10 323 1.43e-26 113
MS.gene50510.t1 MTR_7g105510 60.802 324 107 4 1 304 14 337 2.86e-124 368
MS.gene50510.t1 MTR_7g105980 60.870 253 92 3 269 514 65 317 1.02e-99 305
MS.gene50510.t1 MTR_7g105980 33.491 212 87 4 53 261 15 175 1.14e-23 102
MS.gene50510.t1 MTR_7g105980 60.729 247 90 3 275 514 1 247 3.26e-97 296
MS.gene50510.t1 MTR_7g095310 59.111 225 75 5 119 326 1 225 4.03e-73 232
MS.gene50510.t1 MTR_2g064400 44.884 303 139 5 1 284 1 294 2.59e-69 231
MS.gene50510.t1 MTR_2g064400 33.444 302 172 7 234 513 133 427 8.57e-34 134
MS.gene50510.t1 MTR_6g471300 58.491 212 84 3 232 441 23 232 3.24e-68 219
MS.gene50510.t1 MTR_7g095340 62.295 183 59 5 2 179 3 180 1.49e-65 216
MS.gene50510.t1 MTR_7g095390 60.571 175 60 4 3 171 2 173 6.69e-57 188
MS.gene50510.t1 MTR_5g024120 42.929 198 66 3 319 514 138 290 1.11e-41 153
MS.gene50510.t1 MTR_5g024120 63.478 115 37 3 1 114 1 111 7.95e-36 137
MS.gene50510.t1 MTR_7g111110 64.368 87 26 1 13 99 10 91 1.11e-30 115
MS.gene50510.t1 MTR_7g114090 30.921 304 175 9 7 285 1 294 3.94e-28 117
MS.gene50510.t1 MTR_7g116250 34.764 233 131 5 7 218 1 233 4.99e-28 113
MS.gene50510.t1 MTR_7g105520 55.000 100 44 1 387 485 2 101 9.05e-28 107
MS.gene50510.t1 MTR_7g116580 28.990 307 181 10 7 281 1 302 3.64e-25 108
MS.gene50510.t1 MTR_7g116580 26.316 247 142 9 292 510 187 421 3.83e-13 72.0
MS.gene50510.t1 MTR_7g092110 53.086 81 34 2 433 512 83 160 7.34e-19 85.1
MS.gene50510.t1 MTR_7g092110 70.000 50 11 2 1 50 25 70 1.68e-13 69.7
MS.gene50510.t1 MTR_2g032940 75.000 48 11 1 1 48 1 47 8.47e-16 72.0
MS.gene50510.t1 MTR_1g021820 29.167 216 133 5 14 229 33 228 2.41e-13 72.4
MS.gene50510.t1 MTR_1g011410 28.700 223 138 7 14 236 320 521 5.35e-13 72.0
MS.gene50510.t1 MTR_4g057860 49.315 73 31 2 466 532 1 73 2.18e-12 63.9
MS.gene50510.t1 MTR_1g016310 25.170 294 198 8 14 303 25 300 2.97e-12 68.6
MS.gene50510.t1 MTR_1g013630 30.732 205 118 7 14 213 44 229 4.11e-12 68.2
MS.gene50510.t1 MTR_0049s0110 27.126 247 141 10 13 254 12 224 4.55e-12 67.0
MS.gene50510.t1 MTR_5g040850 26.506 249 158 7 14 256 12 241 4.82e-12 68.6
MS.gene50510.t1 MTR_1g016310 25.170 294 198 8 14 303 25 300 6.96e-12 67.8
MS.gene50510.t1 MTR_0049s0110 27.751 209 121 8 13 216 12 195 7.80e-12 67.0
MS.gene50510.t1 MTR_0049s0110 27.751 209 121 8 13 216 12 195 9.19e-12 67.4
MS.gene50510.t1 MTR_0049s0110 27.751 209 121 8 13 216 12 195 1.26e-11 66.6
MS.gene50510.t1 MTR_2g047848 24.306 288 180 8 14 282 12 280 1.98e-11 66.6
MS.gene50510.t1 MTR_2g070780 27.675 271 168 9 14 262 22 286 2.47e-11 65.9
MS.gene50510.t1 MTR_7g095660 52.830 53 23 1 462 514 18 68 2.99e-11 62.0
MS.gene50510.t1 MTR_1g016340 27.007 274 179 9 14 282 20 277 4.76e-11 65.5
MS.gene50510.t1 MTR_1g016340 27.007 274 179 9 14 282 25 282 5.46e-11 65.1
MS.gene50510.t1 MTR_2g047872 26.126 222 143 5 14 234 28 229 1.00e-10 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 71 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAATTGCGGGGTTGAAAT+TGG 0.183172 7.3:+15793464 MS.gene50510:CDS
ATCATAATCTCGACTACTTT+TGG 0.207236 7.3:+15794216 MS.gene50510:CDS
TTGAAACCAGATAAATTTAT+AGG 0.212278 7.3:-15793281 None:intergenic
TATCATCCAACAATTCTTAA+AGG 0.267997 7.3:-15793747 None:intergenic
AATTGAACTCACAATCATTA+AGG 0.276353 7.3:-15793397 None:intergenic
ATAGCACCTATAAATTTATC+TGG 0.311525 7.3:+15793275 MS.gene50510:CDS
TTAATTGCGGGGTTGAAATT+GGG 0.320014 7.3:+15793465 MS.gene50510:CDS
TGTAAAGCAGGATTTGCTTC+AGG 0.326741 7.3:+15793337 MS.gene50510:CDS
ATGATGGCATGTCTCCTTAT+AGG 0.351286 7.3:+15793828 MS.gene50510:CDS
CTCTCATCCTTTGAATATAG+TGG 0.356872 7.3:+15793872 MS.gene50510:CDS
ATTTAAACATTGTTAATTGC+GGG 0.376208 7.3:+15793453 MS.gene50510:CDS
ATTGAAAATTCACATATGAT+TGG 0.392710 7.3:+15795464 MS.gene50510:CDS
TCACTATGTTGATTACCTAA+TGG 0.396330 7.3:-15793080 None:intergenic
TGGACTCCATGAATGTATTT+CGG 0.410803 7.3:+15793673 MS.gene50510:CDS
GCATCAATAGACATCCTATA+AGG 0.425432 7.3:-15793842 None:intergenic
CCATTCATGAAGCCATCGTT+TGG 0.427804 7.3:-15792874 None:intergenic
GAGATTTATGTTGTAAAGAG+TGG 0.437990 7.3:-15796307 None:intergenic
AGAGAAATTAGCAGAGGTAT+TGG 0.441283 7.3:+15794142 MS.gene50510:CDS
ATTGAACTCACAATCATTAA+GGG 0.446724 7.3:-15793396 None:intergenic
AAATTTAGAGCTATTTATTG+AGG 0.448634 7.3:+15794184 MS.gene50510:CDS
TAATTGCGGGGTTGAAATTG+GGG 0.450176 7.3:+15793466 MS.gene50510:CDS
ATCGGAATTCGTCACAAGAA+TGG 0.456875 7.3:+15793001 MS.gene50510:CDS
TCGTAAAGTCTTCATGATAT+AGG 0.457011 7.3:-15796336 None:intergenic
ACGTCACCTTTAAGAATTGT+TGG 0.460869 7.3:+15793741 MS.gene50510:CDS
TGTTGTCCGAAATACATTCA+TGG 0.461388 7.3:-15793679 None:intergenic
CCAAACGATGGCTTCATGAA+TGG 0.461815 7.3:+15792874 MS.gene50510:CDS
GTAAAGCAGGATTTGCTTCA+GGG 0.464723 7.3:+15793338 MS.gene50510:CDS
ATGCTCAAATGACGCAGCTT+CGG 0.472890 7.3:-15793791 None:intergenic
TCTACCTCTGTAGCTAAACT+TGG 0.474315 7.3:-15793591 None:intergenic
ATATAAAGTAAGCTTCCATA+TGG 0.474931 7.3:-15793986 None:intergenic
TATTACAGTCAAACATGTTA+CGG 0.483395 7.3:-15792926 None:intergenic
ATAATTGATTGTAGCTATGA+TGG 0.491309 7.3:+15793812 MS.gene50510:CDS
ATATTCGATATAACACAATC+TGG 0.493160 7.3:-15792804 None:intergenic
GCATCTTGTTGTTGTAAAGC+AGG 0.493856 7.3:+15793325 MS.gene50510:CDS
AGATTTATGTTGTAAAGAGT+GGG 0.495759 7.3:-15796306 None:intergenic
AGTCTAAAGACAAATTTGTA+TGG 0.496604 7.3:-15793200 None:intergenic
TAAGCTTCCATATGGATGAA+TGG 0.498427 7.3:-15793978 None:intergenic
AATTTAGAGCTATTTATTGA+GGG 0.499343 7.3:+15794185 MS.gene50510:CDS
CATTTAAACATTGTTAATTG+CGG 0.506294 7.3:+15793452 MS.gene50510:CDS
GGCAAAAGGAGTTTCTTCTC+TGG 0.508809 7.3:-15793957 None:intergenic
TTCTGAATGTCTCCAACTTG+AGG 0.511702 7.3:+15793718 MS.gene50510:CDS
CCATATGGATGAATGGCAAA+AGG 0.514809 7.3:-15793971 None:intergenic
TATGATTATGAGCACTTCAC+AGG 0.515051 7.3:+15794021 MS.gene50510:CDS
TAAAGGTGACGTCCTCAAGT+TGG 0.541407 7.3:-15793730 None:intergenic
AGGAAAAGAAGAGAATATGC+AGG 0.544808 7.3:+15795494 MS.gene50510:CDS
TAATGCTCCAAGGTTATCAA+AGG 0.545010 7.3:+15793916 MS.gene50510:CDS
TCAATTGAATATTCTTGCAA+TGG 0.545122 7.3:+15793527 MS.gene50510:CDS
TGTTCATTGAGTGTACTTCA+CGG 0.547219 7.3:-15793550 None:intergenic
GTCTACAAGATGGATGCAGC+TGG 0.548530 7.3:-15793369 None:intergenic
CAATTGATGCTGAAATATCA+AGG 0.552746 7.3:+15793026 MS.gene50510:CDS
CGTGTAACCACTATATTCAA+AGG 0.556800 7.3:-15793879 None:intergenic
GTGACAACAATTGTGTTCGA+TGG 0.559994 7.3:+15793653 MS.gene50510:CDS
CATGATCCGTTCACTTCGAG+TGG 0.563184 7.3:+15793052 MS.gene50510:CDS
TTGAAATATGTAGAGTTGCA+TGG 0.568499 7.3:+15795533 MS.gene50510:CDS
ATAACACAATCTGGTAACTC+AGG 0.575006 7.3:-15792795 None:intergenic
TATTCTCTGTTAATGCTCCA+AGG 0.578390 7.3:+15793906 MS.gene50510:CDS
TAAGGGTGAAGTCTACAAGA+TGG 0.582003 7.3:-15793379 None:intergenic
CACATATGATTGGACTTCAG+AGG 0.586014 7.3:+15795474 MS.gene50510:CDS
TGTTACGGAGATCAAAATTG+AGG 0.594580 7.3:-15792911 None:intergenic
TTTAAACATTGTTAATTGCG+GGG 0.594670 7.3:+15793454 MS.gene50510:CDS
TTGCGGGGTTGAAATTGGGG+AGG 0.603541 7.3:+15793469 MS.gene50510:CDS
GAAAATCCACTCGAAGTGAA+CGG 0.606801 7.3:-15793058 None:intergenic
TTATCCAAGTTTAGCTACAG+AGG 0.607441 7.3:+15793587 MS.gene50510:CDS
AGACATTCAGAAAACAAATG+AGG 0.612064 7.3:-15793707 None:intergenic
GATTTATGTTGTAAAGAGTG+GGG 0.615322 7.3:-15796305 None:intergenic
ACAGGTAGAGAAATTAGCAG+AGG 0.648016 7.3:+15794136 MS.gene50510:intron
CAAGTGTATTATCCAAACGA+TGG 0.659474 7.3:+15792862 MS.gene50510:CDS
TTGAATATAGTGGTTACACG+AGG 0.667234 7.3:+15793882 MS.gene50510:CDS
AGTACACTCAATGAACATTG+AGG 0.679605 7.3:+15793556 MS.gene50510:CDS
ATGTTTAAATGAAACAACGT+CGG 0.680399 7.3:-15793440 None:intergenic
TGAATATAGTGGTTACACGA+GGG 0.696995 7.3:+15793883 MS.gene50510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTACTTTTAGAAATAAAT+AGG + chr7.3:15794519-15794538 MS.gene50510:intron 10.0%
!! CTTTCAGTTAAATTATATTA+AGG - chr7.3:15794463-15794482 None:intergenic 15.0%
!! TATTAAGGAAAATAAATTTC+CGG - chr7.3:15794448-15794467 None:intergenic 15.0%
!!! AGAACTTGTTTATTATATTA+CGG - chr7.3:15795331-15795350 None:intergenic 15.0%
!! AAACGTTTGAAAAAAATTAG+TGG + chr7.3:15795073-15795092 MS.gene50510:intron 20.0%
!! AAATTAATTCTGATTTCAAC+CGG + chr7.3:15794426-15794445 MS.gene50510:intron 20.0%
!! ACAATTACCTTTATTGTTAA+TGG + chr7.3:15794108-15794127 MS.gene50510:intron 20.0%
!! ATTACTTGACAAAAGAAAAT+TGG + chr7.3:15794797-15794816 MS.gene50510:intron 20.0%
!! ATTGAAAATTCACATATGAT+TGG + chr7.3:15795464-15795483 MS.gene50510:CDS 20.0%
!! ATTTAAACATTGTTAATTGC+GGG + chr7.3:15793453-15793472 MS.gene50510:CDS 20.0%
!! CATTTAAACATTGTTAATTG+CGG + chr7.3:15793452-15793471 MS.gene50510:CDS 20.0%
!! TAACATTGTATAGTTTACTT+TGG + chr7.3:15795812-15795831 MS.gene50510:intron 20.0%
!! TCTCTTGACAAAATTTATAT+GGG + chr7.3:15795638-15795657 MS.gene50510:intron 20.0%
!! TTCTCTTGACAAAATTTATA+TGG + chr7.3:15795637-15795656 MS.gene50510:intron 20.0%
!! TTGAAACCAGATAAATTTAT+AGG - chr7.3:15793284-15793303 None:intergenic 20.0%
!!! AAATTTAGAGCTATTTATTG+AGG + chr7.3:15794184-15794203 MS.gene50510:CDS 20.0%
!!! AATTTAGAGCTATTTATTGA+GGG + chr7.3:15794185-15794204 MS.gene50510:CDS 20.0%
!!! AGAGAATTTTCTAAACATAT+TGG + chr7.3:15793611-15793630 MS.gene50510:CDS 20.0%
!!! AGTTTTTAAAAGGTTTCAAT+CGG + chr7.3:15792983-15793002 MS.gene50510:CDS 20.0%
!!! ATAAAGGTAATTGTTATTTG+TGG - chr7.3:15794102-15794121 None:intergenic 20.0%
!!! ATTGACAAAATGATTTTCAA+AGG + chr7.3:15793107-15793126 MS.gene50510:CDS 20.0%
!!! GAGAATTTTCTAAACATATT+GGG + chr7.3:15793612-15793631 MS.gene50510:CDS 20.0%
!!! TAAAGGTAATTGTTATTTGT+GGG - chr7.3:15794101-15794120 None:intergenic 20.0%
!!! TTCTACATTAAATAGTGTTT+TGG - chr7.3:15795959-15795978 None:intergenic 20.0%
!!! TTTTTATACTTGTTGCTATA+TGG - chr7.3:15794552-15794571 None:intergenic 20.0%
! AAGAATAAATGAGGTTTATG+TGG - chr7.3:15794754-15794773 None:intergenic 25.0%
! AATTGAACTCACAATCATTA+AGG - chr7.3:15793400-15793419 None:intergenic 25.0%
! AGATTTATGTTGTAAAGAGT+GGG - chr7.3:15796309-15796328 None:intergenic 25.0%
! AGTCTAAAGACAAATTTGTA+TGG - chr7.3:15793203-15793222 None:intergenic 25.0%
! ATAATGCTTACACAAATAAC+AGG - chr7.3:15795273-15795292 None:intergenic 25.0%
! ATAATTGATTGTAGCTATGA+TGG + chr7.3:15793812-15793831 MS.gene50510:CDS 25.0%
! ATAGCACCTATAAATTTATC+TGG + chr7.3:15793275-15793294 MS.gene50510:CDS 25.0%
! ATATAAAGTAAGCTTCCATA+TGG - chr7.3:15793989-15794008 None:intergenic 25.0%
! ATATTCGATATAACACAATC+TGG - chr7.3:15792807-15792826 None:intergenic 25.0%
! ATGTTTAAATGAAACAACGT+CGG - chr7.3:15793443-15793462 None:intergenic 25.0%
! ATTGAACTCACAATCATTAA+GGG - chr7.3:15793399-15793418 None:intergenic 25.0%
! CATTAGTGTTATATGAATGA+TGG + chr7.3:15795382-15795401 MS.gene50510:intron 25.0%
! CTGCTTACATGAAAAATTAT+AGG - chr7.3:15794709-15794728 None:intergenic 25.0%
! GTTTACACCATTAACAATAA+AGG - chr7.3:15794118-15794137 None:intergenic 25.0%
! TATCATCCAACAATTCTTAA+AGG - chr7.3:15793750-15793769 None:intergenic 25.0%
! TATTACAGTCAAACATGTTA+CGG - chr7.3:15792929-15792948 None:intergenic 25.0%
! TCAATTGAATATTCTTGCAA+TGG + chr7.3:15793527-15793546 MS.gene50510:CDS 25.0%
! TTATTGTTAATGGTGTAAAC+AGG + chr7.3:15794118-15794137 MS.gene50510:intron 25.0%
! TTCACACAAAAGAATAAATG+AGG - chr7.3:15794763-15794782 None:intergenic 25.0%
! TTGTATAGTTTACTTTGGTT+AGG + chr7.3:15795817-15795836 MS.gene50510:intron 25.0%
! TTTAAACATTGTTAATTGCG+GGG + chr7.3:15793454-15793473 MS.gene50510:CDS 25.0%
!! ATTTTCAAAGGAATTGCTAA+GGG + chr7.3:15793119-15793138 MS.gene50510:CDS 25.0%
!! CTTTTCAAAGTTAAGTTTGA+AGG + chr7.3:15792827-15792846 MS.gene50510:CDS 25.0%
!! GTGAATTATAGTTTTCTAGA+CGG + chr7.3:15794380-15794399 MS.gene50510:intron 25.0%
!! TTCCAGTTTCAGTTTTTAAA+AGG + chr7.3:15792973-15792992 MS.gene50510:CDS 25.0%
!! TTGGATTTTAGATATTGCAA+TGG + chr7.3:15794235-15794254 MS.gene50510:CDS 25.0%
!! TTGTCAGTTAACAATTTTGT+AGG + chr7.3:15795754-15795773 MS.gene50510:intron 25.0%
!!! AAATTGATTTTTGACCGAAT+TGG + chr7.3:15795892-15795911 MS.gene50510:intron 25.0%
!!! AACCTTTTAAAAACTGAAAC+TGG - chr7.3:15792978-15792997 None:intergenic 25.0%
!!! ATAGGTTGTTCATGTTTTTT+TGG + chr7.3:15794314-15794333 MS.gene50510:intron 25.0%
!!! CATTTAACTCCATTTGTTAT+AGG + chr7.3:15794296-15794315 MS.gene50510:intron 25.0%
!!! TTTTAAAAACTGAAACTGGA+AGG - chr7.3:15792974-15792993 None:intergenic 25.0%
AGACATTCAGAAAACAAATG+AGG - chr7.3:15793710-15793729 None:intergenic 30.0%
ATAGTTTACTTTGGTTAGGA+AGG + chr7.3:15795821-15795840 MS.gene50510:intron 30.0%
CAATTGATGCTGAAATATCA+AGG + chr7.3:15793026-15793045 MS.gene50510:CDS 30.0%
CATCCAAACATAAACCAATT+CGG - chr7.3:15795909-15795928 None:intergenic 30.0%
CATGAACAACCTATAACAAA+TGG - chr7.3:15794308-15794327 None:intergenic 30.0%
CTTATAGAAGTTAAGCTAGT+GGG + chr7.3:15795037-15795056 MS.gene50510:intron 30.0%
GAGATTTATGTTGTAAAGAG+TGG - chr7.3:15796310-15796329 None:intergenic 30.0%
GATTTATGTTGTAAAGAGTG+GGG - chr7.3:15796308-15796327 None:intergenic 30.0%
GGAACCTAATTTAACTCAAT+TGG + chr7.3:15794818-15794837 MS.gene50510:intron 30.0%
TATTACGGTTATATTTGTCG+AGG - chr7.3:15795316-15795335 None:intergenic 30.0%
TTGAAATATGTAGAGTTGCA+TGG + chr7.3:15795533-15795552 MS.gene50510:CDS 30.0%
! ATCATAATCTCGACTACTTT+TGG + chr7.3:15794216-15794235 MS.gene50510:CDS 30.0%
! CAAAAAACCTTTGATAACCT+TGG - chr7.3:15793926-15793945 None:intergenic 30.0%
! GATTTTCAAAGGAATTGCTA+AGG + chr7.3:15793118-15793137 MS.gene50510:CDS 30.0%
! TCACTATGTTGATTACCTAA+TGG - chr7.3:15793083-15793102 None:intergenic 30.0%
! TCTAAACATATTGGGTTTTC+TGG + chr7.3:15793620-15793639 MS.gene50510:CDS 30.0%
! TTCTGGAAACAAAACCATTT+CGG - chr7.3:15796273-15796292 None:intergenic 30.0%
!! GAAGATAACTGATTTTGAAG+AGG + chr7.3:15796023-15796042 MS.gene50510:intron 30.0%
!! GCTTCAAAGATAACTGATTT+TGG + chr7.3:15795998-15796017 MS.gene50510:intron 30.0%
!! TCAAAGATAACTGATTTTGG+AGG + chr7.3:15796001-15796020 MS.gene50510:intron 30.0%
!!! CAAGGTTATCAAAGGTTTTT+TGG + chr7.3:15793924-15793943 MS.gene50510:CDS 30.0%
AAACAAAACCATTTCGGACT+AGG - chr7.3:15796267-15796286 None:intergenic 35.0%
AAACGCTAAACAACAGACAT+TGG - chr7.3:15795687-15795706 None:intergenic 35.0%
AAAGTAGCTAGTTCGTTATG+AGG - chr7.3:15795013-15795032 None:intergenic 35.0%
AGGAAAAGAAGAGAATATGC+AGG + chr7.3:15795494-15795513 MS.gene50510:CDS 35.0%
AGTACACTCAATGAACATTG+AGG + chr7.3:15793556-15793575 MS.gene50510:CDS 35.0%
ATAACAATTCTTCTCTCACG+AGG - chr7.3:15795230-15795249 None:intergenic 35.0%
ATAACACAATCTGGTAACTC+AGG - chr7.3:15792798-15792817 None:intergenic 35.0%
ATGATATTACAACCCTAACG+TGG + chr7.3:15794864-15794883 MS.gene50510:intron 35.0%
CAAGTGTATTATCCAAACGA+TGG + chr7.3:15792862-15792881 MS.gene50510:CDS 35.0%
CGTGTAACCACTATATTCAA+AGG - chr7.3:15793882-15793901 None:intergenic 35.0%
CTCGCCAATTGAGTTAAATT+AGG - chr7.3:15794825-15794844 None:intergenic 35.0%
CTCTCATCCTTTGAATATAG+TGG + chr7.3:15793872-15793891 MS.gene50510:CDS 35.0%
GACAAAATTTATATGGGTGC+TGG + chr7.3:15795644-15795663 MS.gene50510:intron 35.0%
GCATCAATAGACATCCTATA+AGG - chr7.3:15793845-15793864 None:intergenic 35.0%
GCTTATAGAAGTTAAGCTAG+TGG + chr7.3:15795036-15795055 MS.gene50510:intron 35.0%
TAAATGTTGTGACCACGTTA+GGG - chr7.3:15794879-15794898 None:intergenic 35.0%
TAAGCTTCCATATGGATGAA+TGG - chr7.3:15793981-15794000 None:intergenic 35.0%
TAATGCTCCAAGGTTATCAA+AGG + chr7.3:15793916-15793935 MS.gene50510:CDS 35.0%
TATGATTATGAGCACTTCAC+AGG + chr7.3:15794021-15794040 MS.gene50510:CDS 35.0%
TATTCTCTGTTAATGCTCCA+AGG + chr7.3:15793906-15793925 MS.gene50510:CDS 35.0%
TCTCGAAAAACTTTCTGTGA+CGG + chr7.3:15794268-15794287 MS.gene50510:CDS 35.0%
TGAATATAGTGGTTACACGA+GGG + chr7.3:15793883-15793902 MS.gene50510:CDS 35.0%
TGGACTCCATGAATGTATTT+CGG + chr7.3:15793673-15793692 MS.gene50510:CDS 35.0%
TGTTACGGAGATCAAAATTG+AGG - chr7.3:15792914-15792933 None:intergenic 35.0%
TGTTCATTGAGTGTACTTCA+CGG - chr7.3:15793553-15793572 None:intergenic 35.0%
TGTTGTCCGAAATACATTCA+TGG - chr7.3:15793682-15793701 None:intergenic 35.0%
TTAATTGCGGGGTTGAAATT+GGG + chr7.3:15793465-15793484 MS.gene50510:CDS 35.0%
TTATCCAAGTTTAGCTACAG+AGG + chr7.3:15793587-15793606 MS.gene50510:CDS 35.0%
TTGAATATAGTGGTTACACG+AGG + chr7.3:15793882-15793901 MS.gene50510:CDS 35.0%
! ACGACAAAGAATGCAGATTT+TGG - chr7.3:15796220-15796239 None:intergenic 35.0%
! ACGTCACCTTTAAGAATTGT+TGG + chr7.3:15793741-15793760 MS.gene50510:CDS 35.0%
! AGAGAAATTAGCAGAGGTAT+TGG + chr7.3:15794142-15794161 MS.gene50510:CDS 35.0%
! CGACAAAGAATGCAGATTTT+GGG - chr7.3:15796219-15796238 None:intergenic 35.0%
! TGACCGAATTGGTTTATGTT+TGG + chr7.3:15795903-15795922 MS.gene50510:intron 35.0%
!! TTCATGTAAGCAGTTGATAG+AGG + chr7.3:15794716-15794735 MS.gene50510:intron 35.0%
!!! GGTTTTGTTTCCAGAACTTT+AGG + chr7.3:15796277-15796296 MS.gene50510:intron 35.0%
AAGAGGAGAACCAAACATGT+TGG + chr7.3:15796040-15796059 MS.gene50510:intron 40.0%
ACAGGTAGAGAAATTAGCAG+AGG + chr7.3:15794136-15794155 MS.gene50510:intron 40.0%
ATCGGAATTCGTCACAAGAA+TGG + chr7.3:15793001-15793020 MS.gene50510:CDS 40.0%
ATGATGGCATGTCTCCTTAT+AGG + chr7.3:15793828-15793847 MS.gene50510:CDS 40.0%
CACATATGATTGGACTTCAG+AGG + chr7.3:15795474-15795493 MS.gene50510:CDS 40.0%
CCATATGGATGAATGGCAAA+AGG - chr7.3:15793974-15793993 None:intergenic 40.0%
GAAAATCCACTCGAAGTGAA+CGG - chr7.3:15793061-15793080 None:intergenic 40.0%
GTAAATGTTGTGACCACGTT+AGG - chr7.3:15794880-15794899 None:intergenic 40.0%
GTGACAACAATTGTGTTCGA+TGG + chr7.3:15793653-15793672 MS.gene50510:CDS 40.0%
GTTAATTGCGGGGTTGAAAT+TGG + chr7.3:15793464-15793483 MS.gene50510:CDS 40.0%
TAAGGGTGAAGTCTACAAGA+TGG - chr7.3:15793382-15793401 None:intergenic 40.0%
TAATTGCGGGGTTGAAATTG+GGG + chr7.3:15793466-15793485 MS.gene50510:CDS 40.0%
TCTACCTCTGTAGCTAAACT+TGG - chr7.3:15793594-15793613 None:intergenic 40.0%
TGGATGCAATAATGCGTAAG+TGG + chr7.3:15795923-15795942 MS.gene50510:intron 40.0%
TTCTGAATGTCTCCAACTTG+AGG + chr7.3:15793718-15793737 MS.gene50510:CDS 40.0%
TTTCATCACCTAGTCCGAAA+TGG + chr7.3:15796256-15796275 MS.gene50510:intron 40.0%
! ACTGAAACTGGAAGGTTTTG+TGG - chr7.3:15792966-15792985 None:intergenic 40.0%
! AGTTAGCTAGTCACTTGTTG+AGG + chr7.3:15795582-15795601 MS.gene50510:intron 40.0%
! CCTTTTGCCATTCATCCATA+TGG + chr7.3:15793971-15793990 MS.gene50510:CDS 40.0%
! GTAAAGCAGGATTTGCTTCA+GGG + chr7.3:15793338-15793357 MS.gene50510:CDS 40.0%
! TGTAAAGCAGGATTTGCTTC+AGG + chr7.3:15793337-15793356 MS.gene50510:CDS 40.0%
!! AGAGCTCGTTTTAACAATGG+AGG + chr7.3:15796064-15796083 MS.gene50510:intron 40.0%
!! CTTCGAGTGGATTTTCCATT+AGG + chr7.3:15793065-15793084 MS.gene50510:CDS 40.0%
!! GCATCTTGTTGTTGTAAAGC+AGG + chr7.3:15793325-15793344 MS.gene50510:CDS 40.0%
!! GGTAGAGCTCGTTTTAACAA+TGG + chr7.3:15796061-15796080 MS.gene50510:intron 40.0%
!! TAAGCAGTTGATAGAGGTCA+AGG + chr7.3:15794722-15794741 MS.gene50510:intron 40.0%
!! TTTATATGGGTGCTGGAAGA+TGG + chr7.3:15795651-15795670 MS.gene50510:intron 40.0%
!!! ATTTTGGGTTGACTCCAAAG+AGG - chr7.3:15796204-15796223 None:intergenic 40.0%
ACGAGCTCTACCAACATGTT+TGG - chr7.3:15796053-15796072 None:intergenic 45.0%
ATGCTCAAATGACGCAGCTT+CGG - chr7.3:15793794-15793813 None:intergenic 45.0%
CCAAACGATGGCTTCATGAA+TGG + chr7.3:15792874-15792893 MS.gene50510:CDS 45.0%
CCATTCATGAAGCCATCGTT+TGG - chr7.3:15792877-15792896 None:intergenic 45.0%
GGCAAAAGGAGTTTCTTCTC+TGG - chr7.3:15793960-15793979 None:intergenic 45.0%
GTGCTGGAAGATGGAATAAG+GGG + chr7.3:15795660-15795679 MS.gene50510:intron 45.0%
TAAAGGTGACGTCCTCAAGT+TGG - chr7.3:15793733-15793752 None:intergenic 45.0%
TGGGGTGTAACCTAAAGTTC+TGG - chr7.3:15796290-15796309 None:intergenic 45.0%
! CGGACTAGGTGATGAAACAA+TGG - chr7.3:15796253-15796272 None:intergenic 45.0%
! GGTGCTGGAAGATGGAATAA+GGG + chr7.3:15795659-15795678 MS.gene50510:intron 45.0%
!!! GATTTTTAAATTAAAAAAAA+TGG + chr7.3:15794954-15794973 MS.gene50510:intron 5.0%
CATGATCCGTTCACTTCGAG+TGG + chr7.3:15793052-15793071 MS.gene50510:CDS 50.0%
GTCTACAAGATGGATGCAGC+TGG - chr7.3:15793372-15793391 None:intergenic 50.0%
! GGTTGACTCCAAAGAGGTGA+TGG - chr7.3:15796198-15796217 None:intergenic 50.0%
! TGACTCCAAAGAGGTGATGG+TGG - chr7.3:15796195-15796214 None:intergenic 50.0%
!! AAAGAGGTGATGGTGGAGGA+GGG - chr7.3:15796188-15796207 None:intergenic 50.0%
!! GGGTGCTGGAAGATGGAATA+AGG + chr7.3:15795658-15795677 MS.gene50510:intron 50.0%
AGGGAGAGAGGAAGAGAGAG+AGG - chr7.3:15796127-15796146 None:intergenic 55.0%
CTCCTCCACCATCACCTCTT+TGG + chr7.3:15796187-15796206 MS.gene50510:intron 55.0%
GGGAGAGAGGAAGAGAGAGA+GGG - chr7.3:15796126-15796145 None:intergenic 55.0%
TTGCGGGGTTGAAATTGGGG+AGG + chr7.3:15793469-15793488 MS.gene50510:CDS 55.0%
!! CAAAGAGGTGATGGTGGAGG+AGG - chr7.3:15796189-15796208 None:intergenic 55.0%
!! CTCCAAAGAGGTGATGGTGG+AGG - chr7.3:15796192-15796211 None:intergenic 55.0%
GAGAGAGGGAGAGAGGGAGA+GGG - chr7.3:15796152-15796171 None:intergenic 60.0%
GAGAGAGGGAGAGGGAGAGA+GGG - chr7.3:15796166-15796185 None:intergenic 60.0%
GAGAGGGAGAGAGGGAGAGA+GGG - chr7.3:15796158-15796177 None:intergenic 60.0%
!! GATGGTGGAGGAGGGAGAGA+GGG - chr7.3:15796180-15796199 None:intergenic 60.0%
!! TGATGGTGGAGGAGGGAGAG+AGG - chr7.3:15796181-15796200 None:intergenic 60.0%
AGGGAGAGAGGGAGAGGGAG+AGG - chr7.3:15796147-15796166 None:intergenic 65.0%
AGGGAGAGGGAGAGGGAGAG+AGG - chr7.3:15796139-15796158 None:intergenic 65.0%
GGAGAGAGGGAGAGAGGGAG+AGG - chr7.3:15796153-15796172 None:intergenic 65.0%
GGAGAGAGGGAGAGGGAGAG+AGG - chr7.3:15796145-15796164 None:intergenic 65.0%
GGAGAGGGAGAGAGGGAGAG+AGG - chr7.3:15796159-15796178 None:intergenic 65.0%
GGAGGAGGGAGAGAGGGAGA+GGG - chr7.3:15796174-15796193 None:intergenic 65.0%
GGGAGAGAGGGAGAGGGAGA+GGG - chr7.3:15796146-15796165 None:intergenic 65.0%
TGGAGGAGGGAGAGAGGGAG+AGG - chr7.3:15796175-15796194 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 15792762 15796347 15792762 ID=MS.gene50510
chr7.3 mRNA 15792762 15796347 15792762 ID=MS.gene50510.t1;Parent=MS.gene50510
chr7.3 exon 15792762 15794042 15792762 ID=MS.gene50510.t1.exon1;Parent=MS.gene50510.t1
chr7.3 CDS 15792762 15794042 15792762 ID=cds.MS.gene50510.t1;Parent=MS.gene50510.t1
chr7.3 exon 15794140 15794289 15794140 ID=MS.gene50510.t1.exon2;Parent=MS.gene50510.t1
chr7.3 CDS 15794140 15794289 15794140 ID=cds.MS.gene50510.t1;Parent=MS.gene50510.t1
chr7.3 exon 15795464 15795574 15795464 ID=MS.gene50510.t1.exon3;Parent=MS.gene50510.t1
chr7.3 CDS 15795464 15795574 15795464 ID=cds.MS.gene50510.t1;Parent=MS.gene50510.t1
chr7.3 exon 15796291 15796347 15796291 ID=MS.gene50510.t1.exon4;Parent=MS.gene50510.t1
chr7.3 CDS 15796291 15796347 15796291 ID=cds.MS.gene50510.t1;Parent=MS.gene50510.t1
Gene Sequence

>MS.gene50510

ATGAATAAGAGTAAAAAGCTAAAGAGTGAGTTACCTGAGTTACCAGATTGTGTTATATCGAATATCTTTTCAAAGTTAAGTTTGAAGGATTTGATTAAAACAAGTGTATTATCCAAACGATGGCTTCATGAATGGAGATTAAGAATTGACCTCAATTTTGATCTCCGTAACATGTTTGACTGTAATACAATTCAAGAATTACCACAAAACCTTCCAGTTTCAGTTTTTAAAAGGTTTCAATCGGAATTCGTCACAAGAATGGATCAATTGATGCTGAAATATCAAGGTGACATGATCCGTTCACTTCGAGTGGATTTTCCATTAGGTAATCAACATAGTGATGTCATTGACAAAATGATTTTCAAAGGAATTGCTAAGGGTGTCGAACGTATTGAACTGCTCTTCTCATATCAAACTAATGCTGATTTTGAAATAGAGCCATACAAATTTGTCTTTAGACTCTTATCTCTCAATGATTCTTTGACGTATCTGCATCTACAGAAGTGCGACTTGATAGCACCTATAAATTTATCTGGTTTCAATAATTTGAGAACTCTTGTGTTGCATCTTGTTGTTGTAAAGCAGGATTTGCTTCAGGGTATGTTGTCCAGCTGCATCCATCTTGTAGACTTCACCCTTAATGATTGTGAGTTCAATTCTGACTTGAAAATAATTAGTCCGACGTTGTTTCATTTAAACATTGTTAATTGCGGGGTTGAAATTGGGGAGGAAAAGAATATAGATATCATTGCATCAAATCTGTCGTCAATTGAATATTCTTGCAATGGCCGTGAAGTACACTCAATGAACATTGAGGCTCATATGTTATCCAAGTTTAGCTACAGAGGTAGAGAATTTTCTAAACATATTGGGTTTTCTGGATTGAAGAATGTGACAACAATTGTGTTCGATGGACTCCATGAATGTATTTCGGACAACATTGTGCCTCATTTGTTTTCTGAATGTCTCCAACTTGAGGACGTCACCTTTAAGAATTGTTGGATGATATGTCGAATGAAAATTATCAGTCCGAAGCTGCGTCATTTGAGCATAATTGATTGTAGCTATGATGGCATGTCTCCTTATAGGATGTCTATTGATGCATTGAATCTCTCATCCTTTGAATATAGTGGTTACACGAGGGTATTCTCTGTTAATGCTCCAAGGTTATCAAAGGTTTTTTGGAATGCAACTACCAGAGAAGAAACTCCTTTTGCCATTCATCCATATGGAAGCTTACTTTATATTGAGAATTTAACTATGATTATGAGCACTTCACAGGTGAGTAAGTTAGTTAAAACTCATGTTTGTTGCTTGATGTTTATTGTTGAAAAAACCCACAAATAACAATTACCTTTATTGTTAATGGTGTAAACAGGTAGAGAAATTAGCAGAGGTATTGGTCGAATTTCAAAATCTAAAAAATTTAGAGCTATTTATTGAGGGAGCATATGATCATAATCTCGACTACTTTTGGATTTTAGATATTGCAATGGCTTCTCATCATCTCGAAAAACTTTCTGTGACGGTGAGTCATTTAACTCCATTTGTTATAGGTTGTTCATGTTTTTTTGGCGATTTGTTCACTTTATTTTAAATGTTATAATTTTTCTTTATAGTGAATTATAGTTTTCTAGACGGTTTATATATAAATCAATTTGATGAAATTAATTCTGATTTCAACCGGAAATTTATTTTCCTTAATATAATTTAACTGAAAGTTTTAATCTATCATGAAAGTTTCAAATTAAAACTTTATTTACTTTTAGAAATAAATAGGTAAAATTCCATATAGCAACAAGTATAAAAAAATGATAATTTATAATGATCTTCATTCATTTTTCAAAACGCTTAATATATGATTATTTTAATTTTAACTTAATTTCTTAAATCAATTTTCAGAACTAAATGTTAAATTTATATGTGTATTATAAAATTAGTGAACCTATAATTTTTCATGTAAGCAGTTGATAGAGGTCAAGGTTCGAACCACATAAACCTCATTTATTCTTTTGTGTGAATTTTTAGCTACTGCATTACTTGACAAAAGAAAATTGGAACCTAATTTAACTCAATTGGCGAGTTCTAGTTAATCATGTGCAATGATATTACAACCCTAACGTGGTCACAACATTTACATAAGACTTAGTCTCTATTAAAGTATAAACAAAAAAAAGTAGAATAAACAATATGATTTTTAAATTAAAAAAAATGGTGTGTATTATTATTATTTTTTATCACACACACGCCTCATAACGAACTAGCTACTTTATAGCTTATAGAAGTTAAGCTAGTGGGTTAATTAAGTTTAAAACGTTTGAAAAAAATTAGTGGTTGAATTAACTGATAAATAATAAAATGAATAATTTAAATTATTTAGAATTTCGTCAATTAAAAATATGTGAGTAAAAATGAGAGAAATTTTATGTGATAATCTAAAACACTTCTTGAATTATATGACATAACCTCGTGAGAGAAGAATTGTTATCACATAATTTTTTTTTTCTTCCTGTTATTTGTGTAAGCATTATACACTGTAAGCTGAGTTTATCCTCGACAAATATAACCGTAATATAATAAACAAGTTCTTATTTCAACTAAAATAACGATTTAAGTCTTGCATTAGTGTTATATGAATGATGGAATTTTAAAATTTTCATGTAATGTATTATCATCATGATAGTTATTTTTCACTTTTTCAGATTGAAAATTCACATATGATTGGACTTCAGAGGAAAAGAAGAGAATATGCAGGATTTTTTCACAACAATTTGAAATATGTAGAGTTGCATGGTTGTGCGTGCACAACAAACGTAATTGAGTTAGCTAGTCACTTGTTGAGGAATGCAAATTCACTTAAGAAAATTACTTTTAGTTCTCTTGACAAAATTTATATGGGTGCTGGAAGATGGAATAAGGGGTCCAATGTCTGTTGTTTAGCGTTTAAACGTAATTTCATTCATGAGATGCTTAAAGACGATGTAAATAAACATTGTCAGTTAACAATTTTGTAGGTTAATTTATTTATAGAGTTTTGTATTATTATTAGTTAACATTGTATAGTTTACTTTGGTTAGGAAGGAATCATTGTAGTGTTAAACAAAGTGTTTGATTTGTTTTGTGATTGACAAAATTGATTTTTGACCGAATTGGTTTATGTTTGGATGCAATAATGCGTAAGTGGTTGTTATCAACCAAAACACTATTTAATGTAGAATCAAAAGTTAAGAATTGTAGCTTCAAAGATAACTGATTTTGGAGGAAGATAACTGATTTTGAAGAGGAGAACCAAACATGTTGGTAGAGCTCGTTTTAACAATGGAGGCAAAAAGAAGCGCAAAGTATATTGCTCTCTCTCTCTCCCTCTCTCTCTTCCTCTCTCCCTCTCCCTCTCCCTCTCTCCCTCTCTCCCTCTCCCTCTCTCCCTCCTCCACCATCACCTCTTTGGAGTCAACCCAAAATCTGCATTCTTTGTCGTAAATTATCTTCCATTGTTTCATCACCTAGTCCGAAATGGTTTTGTTTCCAGAACTTTAGGTTACACCCCACTCTTTACAACATAAATCTCTATTCGCCTATATCATGA

Protein sequence

>MS.gene50510.t1

MNKSKKLKSELPELPDCVISNIFSKLSLKDLIKTSVLSKRWLHEWRLRIDLNFDLRNMFDCNTIQELPQNLPVSVFKRFQSEFVTRMDQLMLKYQGDMIRSLRVDFPLGNQHSDVIDKMIFKGIAKGVERIELLFSYQTNADFEIEPYKFVFRLLSLNDSLTYLHLQKCDLIAPINLSGFNNLRTLVLHLVVVKQDLLQGMLSSCIHLVDFTLNDCEFNSDLKIISPTLFHLNIVNCGVEIGEEKNIDIIASNLSSIEYSCNGREVHSMNIEAHMLSKFSYRGREFSKHIGFSGLKNVTTIVFDGLHECISDNIVPHLFSECLQLEDVTFKNCWMICRMKIISPKLRHLSIIDCSYDGMSPYRMSIDALNLSSFEYSGYTRVFSVNAPRLSKVFWNATTREETPFAIHPYGSLLYIENLTMIMSTSQVEKLAEVLVEFQNLKNLELFIEGAYDHNLDYFWILDIAMASHHLEKLSVTIENSHMIGLQRKRREYAGFFHNNLKYVELHGCACTTNNFRLHPTLYNINLYSPIS