Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054875.t1 | XP_013449771.1 | 91 | 513 | 39 | 2 | 1 | 511 | 1 | 508 | 8.40E-267 | 930.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054875.t1 | Q9C8Y7 | 24.1 | 402 | 228 | 18 | 10 | 373 | 33 | 395 | 3.4e-06 | 55.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054875.t1 | A0A072U269 | 91.0 | 513 | 39 | 2 | 1 | 511 | 1 | 508 | 6.1e-267 | 930.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene054875 | 0.8246 | 7.39E-54 | -1.69E-46 |
| MS.gene049647 | MS.gene054875 | 0.828113 | 1.08E-54 | -1.69E-46 |
| MS.gene054875 | MS.gene058081 | 0.810599 | 1.06E-50 | -1.69E-46 |
| MS.gene054875 | MS.gene05897 | 0.821464 | 3.98E-53 | -1.69E-46 |
| MS.gene054875 | MS.gene059439 | 0.80779 | 4.26E-50 | -1.69E-46 |
| MS.gene054875 | MS.gene06052 | 0.807581 | 4.71E-50 | -1.69E-46 |
| MS.gene054875 | MS.gene06133 | 0.828711 | 7.72E-55 | -1.69E-46 |
| MS.gene054875 | MS.gene062156 | 0.813891 | 2.03E-51 | -1.69E-46 |
| MS.gene054875 | MS.gene066405 | 0.803588 | 3.25E-49 | -1.69E-46 |
| MS.gene054875 | MS.gene067473 | 0.800269 | 1.56E-48 | -1.69E-46 |
| MS.gene054875 | MS.gene069519 | 0.800353 | 1.50E-48 | -1.69E-46 |
| MS.gene054875 | MS.gene072098 | 0.806151 | 9.46E-50 | -1.69E-46 |
| MS.gene054875 | MS.gene07344 | 0.807014 | 6.22E-50 | -1.69E-46 |
| MS.gene054875 | MS.gene07510 | 0.822056 | 2.91E-53 | -1.69E-46 |
| MS.gene054875 | MS.gene09166 | 0.808309 | 3.30E-50 | -1.69E-46 |
| MS.gene054875 | MS.gene34011 | 0.812994 | 3.20E-51 | -1.69E-46 |
| MS.gene054875 | MS.gene35822 | 0.814251 | 1.69E-51 | -1.69E-46 |
| MS.gene054875 | MS.gene35823 | 0.81086 | 9.34E-51 | -1.69E-46 |
| MS.gene054875 | MS.gene35824 | 0.803717 | 3.05E-49 | -1.69E-46 |
| MS.gene054875 | MS.gene35864 | 0.810171 | 1.32E-50 | -1.69E-46 |
| MS.gene054875 | MS.gene35867 | 0.819103 | 1.38E-52 | -1.69E-46 |
| MS.gene054875 | MS.gene40518 | 0.81334 | 2.69E-51 | -1.69E-46 |
| MS.gene054875 | MS.gene43202 | 0.807757 | 4.32E-50 | -1.69E-46 |
| MS.gene054875 | MS.gene47603 | 0.800341 | 1.51E-48 | -1.69E-46 |
| MS.gene054875 | MS.gene50510 | 0.855744 | 5.13E-62 | -1.69E-46 |
| MS.gene054875 | MS.gene56421 | 0.82522 | 5.28E-54 | -1.69E-46 |
| MS.gene054875 | MS.gene61202 | 0.810983 | 8.79E-51 | -1.69E-46 |
| MS.gene054875 | MS.gene68264 | 0.829243 | 5.74E-55 | -1.69E-46 |
| MS.gene054875 | MS.gene70895 | 0.801618 | 8.27E-49 | -1.69E-46 |
| MS.gene054875 | MS.gene77208 | 0.812425 | 4.27E-51 | -1.69E-46 |
| MS.gene054875 | MS.gene78230 | 0.803074 | 4.15E-49 | -1.69E-46 |
| MS.gene054875 | MS.gene79604 | 0.800408 | 1.46E-48 | -1.69E-46 |
| MS.gene054875 | MS.gene81370 | 0.811361 | 7.28E-51 | -1.69E-46 |
| MS.gene054875 | MS.gene86267 | 0.806802 | 6.89E-50 | -1.69E-46 |
| MS.gene054875 | MS.gene86826 | 0.808507 | 2.99E-50 | -1.69E-46 |
| MS.gene054875 | MS.gene90605 | 0.801888 | 7.28E-49 | -1.69E-46 |
| MS.gene054875 | MS.gene93204 | 0.80682 | 6.83E-50 | -1.69E-46 |
| MS.gene054875 | MS.gene98635 | 0.804265 | 2.35E-49 | -1.69E-46 |
| MS.gene054875 | MS.gene99525 | 0.800289 | 1.55E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054875.t1 | MTR_7g095350 | 91.033 | 513 | 39 | 2 | 1 | 511 | 9 | 516 | 0.0 | 952 |
| MS.gene054875.t1 | MTR_7g095350 | 58.915 | 516 | 148 | 8 | 541 | 1054 | 31 | 484 | 0.0 | 555 |
| MS.gene054875.t1 | MTR_7g095350 | 91.033 | 513 | 39 | 2 | 1 | 511 | 1 | 508 | 0.0 | 951 |
| MS.gene054875.t1 | MTR_7g095350 | 58.915 | 516 | 148 | 8 | 541 | 1054 | 23 | 476 | 0.0 | 554 |
| MS.gene054875.t1 | MTR_7g095350 | 90.553 | 434 | 39 | 1 | 1 | 432 | 9 | 442 | 0.0 | 805 |
| MS.gene054875.t1 | MTR_7g095350 | 57.384 | 474 | 138 | 8 | 541 | 1012 | 31 | 442 | 1.33e-162 | 488 |
| MS.gene054875.t1 | MTR_7g095350 | 90.553 | 434 | 39 | 1 | 1 | 432 | 1 | 434 | 0.0 | 804 |
| MS.gene054875.t1 | MTR_7g095350 | 57.384 | 474 | 138 | 8 | 541 | 1012 | 23 | 434 | 1.27e-162 | 488 |
| MS.gene054875.t1 | MTR_7g095350 | 90.632 | 427 | 38 | 1 | 1 | 425 | 1 | 427 | 0.0 | 793 |
| MS.gene054875.t1 | MTR_7g095350 | 56.723 | 476 | 142 | 8 | 541 | 1014 | 23 | 436 | 9.58e-161 | 483 |
| MS.gene054875.t1 | MTR_6g013380 | 62.069 | 522 | 175 | 7 | 1 | 511 | 62 | 571 | 0.0 | 634 |
| MS.gene054875.t1 | MTR_6g013380 | 57.364 | 516 | 160 | 7 | 541 | 1054 | 82 | 539 | 1.70e-179 | 539 |
| MS.gene054875.t1 | MTR_6g013240 | 62.069 | 522 | 175 | 7 | 1 | 511 | 67 | 576 | 0.0 | 634 |
| MS.gene054875.t1 | MTR_6g013240 | 55.861 | 546 | 180 | 8 | 512 | 1054 | 57 | 544 | 1.29e-179 | 539 |
| MS.gene054875.t1 | MTR_3g009910 | 58.379 | 543 | 195 | 7 | 1 | 517 | 3 | 540 | 0.0 | 608 |
| MS.gene054875.t1 | MTR_3g009910 | 50.633 | 553 | 191 | 9 | 521 | 1054 | 8 | 497 | 2.39e-162 | 493 |
| MS.gene054875.t1 | MTR_7g095560 | 57.196 | 542 | 202 | 6 | 1 | 517 | 3 | 539 | 0.0 | 589 |
| MS.gene054875.t1 | MTR_7g095560 | 49.273 | 550 | 196 | 10 | 524 | 1054 | 11 | 496 | 2.31e-152 | 467 |
| MS.gene054875.t1 | MTR_6g471290 | 48.031 | 762 | 323 | 17 | 1 | 755 | 20 | 715 | 0.0 | 579 |
| MS.gene054875.t1 | MTR_6g471290 | 46.450 | 493 | 182 | 7 | 541 | 1033 | 40 | 450 | 5.98e-108 | 360 |
| MS.gene054875.t1 | MTR_6g471290 | 51.793 | 251 | 99 | 3 | 300 | 536 | 667 | 909 | 8.68e-66 | 241 |
| MS.gene054875.t1 | MTR_6g471290 | 47.368 | 285 | 139 | 4 | 1 | 282 | 488 | 764 | 3.54e-60 | 224 |
| MS.gene054875.t1 | MTR_6g471290 | 51.852 | 189 | 78 | 1 | 879 | 1054 | 667 | 855 | 1.34e-45 | 179 |
| MS.gene054875.t1 | MTR_7g087840 | 55.985 | 543 | 222 | 7 | 1 | 536 | 1 | 533 | 0.0 | 553 |
| MS.gene054875.t1 | MTR_7g087840 | 51.252 | 519 | 186 | 8 | 541 | 1053 | 21 | 478 | 2.77e-140 | 435 |
| MS.gene054875.t1 | MTR_7g089610 | 58.402 | 488 | 186 | 8 | 1 | 479 | 37 | 516 | 5.33e-176 | 526 |
| MS.gene054875.t1 | MTR_7g089610 | 52.299 | 522 | 174 | 9 | 541 | 1054 | 57 | 511 | 4.92e-156 | 474 |
| MS.gene054875.t1 | MTR_7g092650 | 62.759 | 435 | 154 | 6 | 1 | 429 | 27 | 459 | 7.41e-174 | 517 |
| MS.gene054875.t1 | MTR_7g092650 | 56.900 | 471 | 139 | 7 | 541 | 1008 | 49 | 458 | 4.59e-158 | 476 |
| MS.gene054875.t1 | MTR_7g087040 | 58.125 | 480 | 192 | 6 | 1 | 473 | 1 | 478 | 8.53e-166 | 514 |
| MS.gene054875.t1 | MTR_7g087040 | 51.233 | 527 | 188 | 9 | 533 | 1053 | 15 | 478 | 3.90e-138 | 442 |
| MS.gene054875.t1 | MTR_7g087040 | 55.875 | 383 | 157 | 4 | 156 | 536 | 513 | 885 | 3.81e-119 | 391 |
| MS.gene054875.t1 | MTR_7g087040 | 54.516 | 310 | 131 | 2 | 745 | 1054 | 532 | 831 | 1.59e-83 | 293 |
| MS.gene054875.t1 | MTR_3g009910 | 57.395 | 453 | 180 | 6 | 1 | 445 | 3 | 450 | 1.03e-164 | 493 |
| MS.gene054875.t1 | MTR_3g009910 | 49.209 | 506 | 193 | 8 | 521 | 1025 | 8 | 450 | 1.08e-141 | 434 |
| MS.gene054875.t1 | MTR_7g089620 | 59.318 | 440 | 170 | 5 | 1 | 433 | 14 | 451 | 1.19e-159 | 480 |
| MS.gene054875.t1 | MTR_7g089620 | 52.905 | 482 | 154 | 8 | 541 | 1013 | 34 | 451 | 1.16e-143 | 439 |
| MS.gene054875.t1 | MTR_7g089570 | 59.039 | 437 | 165 | 7 | 4 | 433 | 42 | 471 | 7.72e-155 | 469 |
| MS.gene054875.t1 | MTR_7g089570 | 52.708 | 480 | 153 | 8 | 541 | 1013 | 59 | 471 | 4.12e-141 | 433 |
| MS.gene054875.t1 | MTR_6g071510 | 49.722 | 539 | 216 | 9 | 1 | 536 | 1 | 487 | 5.13e-142 | 446 |
| MS.gene054875.t1 | MTR_6g071510 | 47.966 | 467 | 165 | 6 | 541 | 1007 | 21 | 409 | 8.27e-109 | 357 |
| MS.gene054875.t1 | MTR_2g032920 | 55.325 | 385 | 132 | 4 | 57 | 433 | 4 | 356 | 1.51e-132 | 406 |
| MS.gene054875.t1 | MTR_2g032920 | 53.737 | 281 | 108 | 6 | 734 | 1013 | 97 | 356 | 2.42e-76 | 256 |
| MS.gene054875.t1 | MTR_2g032920 | 42.373 | 295 | 121 | 10 | 580 | 827 | 5 | 297 | 7.50e-48 | 175 |
| MS.gene054875.t1 | MTR_0176s0050 | 56.383 | 376 | 160 | 3 | 144 | 517 | 2 | 375 | 1.11e-125 | 391 |
| MS.gene054875.t1 | MTR_0176s0050 | 48.969 | 388 | 141 | 3 | 667 | 1054 | 2 | 332 | 9.05e-96 | 311 |
| MS.gene054875.t1 | MTR_0176s0050 | 55.102 | 392 | 169 | 5 | 131 | 517 | 55 | 444 | 3.32e-124 | 390 |
| MS.gene054875.t1 | MTR_0176s0050 | 48.705 | 386 | 141 | 3 | 669 | 1054 | 73 | 401 | 1.12e-92 | 306 |
| MS.gene054875.t1 | MTR_0176s0050 | 32.239 | 335 | 162 | 8 | 1 | 282 | 1 | 323 | 6.76e-27 | 116 |
| MS.gene054875.t1 | MTR_0176s0050 | 31.118 | 331 | 168 | 8 | 541 | 846 | 21 | 316 | 1.80e-24 | 109 |
| MS.gene054875.t1 | MTR_0176s0050 | 55.851 | 376 | 156 | 4 | 144 | 517 | 2 | 369 | 5.86e-122 | 381 |
| MS.gene054875.t1 | MTR_0176s0050 | 48.843 | 389 | 142 | 3 | 667 | 1055 | 2 | 333 | 3.75e-96 | 313 |
| MS.gene054875.t1 | MTR_7g105510 | 62.058 | 311 | 108 | 3 | 1 | 301 | 27 | 337 | 1.07e-118 | 369 |
| MS.gene054875.t1 | MTR_7g105510 | 52.571 | 350 | 97 | 6 | 541 | 880 | 47 | 337 | 7.85e-99 | 316 |
| MS.gene054875.t1 | MTR_7g095340 | 82.741 | 197 | 26 | 2 | 541 | 729 | 22 | 218 | 7.47e-100 | 318 |
| MS.gene054875.t1 | MTR_7g095340 | 63.333 | 180 | 59 | 4 | 2 | 176 | 3 | 180 | 1.79e-64 | 221 |
| MS.gene054875.t1 | MTR_7g105980 | 62.205 | 254 | 94 | 2 | 266 | 517 | 65 | 318 | 5.48e-99 | 317 |
| MS.gene054875.t1 | MTR_7g105980 | 58.547 | 234 | 86 | 3 | 822 | 1054 | 52 | 275 | 4.13e-77 | 258 |
| MS.gene054875.t1 | MTR_7g105980 | 33.491 | 212 | 87 | 4 | 50 | 258 | 15 | 175 | 3.40e-23 | 103 |
| MS.gene054875.t1 | MTR_7g105980 | 25.588 | 340 | 126 | 11 | 570 | 904 | 15 | 232 | 7.47e-15 | 78.2 |
| MS.gene054875.t1 | MTR_7g105980 | 62.097 | 248 | 92 | 2 | 272 | 517 | 1 | 248 | 1.49e-96 | 308 |
| MS.gene054875.t1 | MTR_7g105980 | 61.502 | 213 | 73 | 2 | 843 | 1054 | 1 | 205 | 1.66e-75 | 251 |
| MS.gene054875.t1 | MTR_7g095310 | 55.515 | 272 | 69 | 5 | 636 | 902 | 1 | 225 | 7.69e-73 | 241 |
| MS.gene054875.t1 | MTR_7g095310 | 59.111 | 225 | 75 | 5 | 116 | 323 | 1 | 225 | 1.41e-69 | 232 |
| MS.gene054875.t1 | MTR_2g064400 | 45.833 | 288 | 133 | 4 | 8 | 281 | 16 | 294 | 9.73e-66 | 231 |
| MS.gene054875.t1 | MTR_2g064400 | 51.402 | 214 | 89 | 3 | 541 | 745 | 29 | 236 | 2.58e-53 | 195 |
| MS.gene054875.t1 | MTR_2g064400 | 33.333 | 303 | 168 | 8 | 231 | 511 | 133 | 423 | 3.45e-30 | 126 |
| MS.gene054875.t1 | MTR_2g064400 | 32.967 | 273 | 133 | 8 | 810 | 1054 | 141 | 391 | 1.56e-21 | 100 |
| MS.gene054875.t1 | MTR_6g471300 | 58.491 | 212 | 84 | 3 | 229 | 438 | 23 | 232 | 2.94e-65 | 220 |
| MS.gene054875.t1 | MTR_6g471300 | 52.273 | 220 | 95 | 2 | 799 | 1018 | 23 | 232 | 5.29e-57 | 197 |
| MS.gene054875.t1 | MTR_7g095390 | 62.209 | 172 | 57 | 3 | 3 | 168 | 4 | 173 | 1.27e-56 | 193 |
| MS.gene054875.t1 | MTR_7g095390 | 60.234 | 171 | 64 | 3 | 522 | 691 | 6 | 173 | 1.79e-55 | 190 |
| MS.gene054875.t1 | MTR_5g024120 | 41.204 | 216 | 75 | 3 | 316 | 529 | 138 | 303 | 8.59e-42 | 157 |
| MS.gene054875.t1 | MTR_5g024120 | 65.179 | 112 | 37 | 2 | 1 | 111 | 1 | 111 | 8.40e-37 | 142 |
| MS.gene054875.t1 | MTR_5g024120 | 53.731 | 134 | 54 | 2 | 885 | 1010 | 121 | 254 | 3.81e-33 | 132 |
| MS.gene054875.t1 | MTR_5g024120 | 63.158 | 95 | 28 | 4 | 533 | 625 | 15 | 104 | 1.64e-27 | 115 |
| MS.gene054875.t1 | MTR_7g111110 | 60.417 | 96 | 33 | 1 | 1 | 96 | 1 | 91 | 2.26e-31 | 118 |
| MS.gene054875.t1 | MTR_7g111110 | 71.053 | 76 | 17 | 2 | 541 | 616 | 21 | 91 | 1.22e-27 | 108 |
| MS.gene054875.t1 | MTR_7g105520 | 64.130 | 92 | 32 | 1 | 964 | 1054 | 2 | 93 | 5.26e-30 | 115 |
| MS.gene054875.t1 | MTR_7g105520 | 56.842 | 95 | 40 | 1 | 384 | 477 | 2 | 96 | 2.63e-27 | 107 |
| MS.gene054875.t1 | MTR_7g116250 | 35.965 | 228 | 125 | 5 | 9 | 215 | 6 | 233 | 5.16e-28 | 114 |
| MS.gene054875.t1 | MTR_7g116250 | 34.862 | 218 | 124 | 5 | 543 | 742 | 20 | 237 | 4.63e-23 | 100 |
| MS.gene054875.t1 | MTR_7g114090 | 31.773 | 299 | 169 | 9 | 9 | 282 | 6 | 294 | 8.84e-28 | 119 |
| MS.gene054875.t1 | MTR_7g114090 | 33.810 | 210 | 120 | 5 | 543 | 737 | 20 | 225 | 1.31e-21 | 100 |
| MS.gene054875.t1 | MTR_7g116580 | 29.801 | 302 | 175 | 10 | 9 | 278 | 6 | 302 | 7.96e-25 | 110 |
| MS.gene054875.t1 | MTR_7g116580 | 28.358 | 268 | 164 | 7 | 543 | 787 | 20 | 282 | 6.81e-20 | 94.7 |
| MS.gene054875.t1 | MTR_7g116580 | 25.896 | 251 | 141 | 10 | 289 | 511 | 187 | 420 | 6.12e-11 | 66.6 |
| MS.gene054875.t1 | MTR_7g092110 | 51.724 | 87 | 33 | 3 | 430 | 514 | 83 | 162 | 6.83e-18 | 83.6 |
| MS.gene054875.t1 | MTR_7g092110 | 74.468 | 47 | 11 | 1 | 1 | 47 | 25 | 70 | 3.82e-15 | 75.5 |
| MS.gene054875.t1 | MTR_2g032940 | 74.468 | 47 | 10 | 1 | 1 | 45 | 1 | 47 | 6.16e-15 | 70.5 |
| MS.gene054875.t1 | MTR_4g057860 | 64.583 | 48 | 17 | 0 | 463 | 510 | 1 | 48 | 4.48e-14 | 69.7 |
| MS.gene054875.t1 | MTR_1g013630 | 28.629 | 248 | 149 | 7 | 541 | 781 | 54 | 280 | 8.34e-14 | 75.1 |
| MS.gene054875.t1 | MTR_1g013630 | 30.918 | 207 | 119 | 7 | 9 | 210 | 42 | 229 | 8.84e-12 | 68.6 |
| MS.gene054875.t1 | MTR_1g021820 | 29.358 | 218 | 134 | 5 | 9 | 226 | 31 | 228 | 2.61e-13 | 73.9 |
| MS.gene054875.t1 | MTR_1g011410 | 28.889 | 225 | 139 | 7 | 9 | 233 | 318 | 521 | 1.32e-12 | 72.4 |
| MS.gene054875.t1 | MTR_0049s0110 | 27.600 | 250 | 142 | 10 | 7 | 251 | 9 | 224 | 1.94e-12 | 69.3 |
| MS.gene054875.t1 | MTR_2g070780 | 28.223 | 287 | 166 | 11 | 1 | 259 | 12 | 286 | 3.10e-12 | 69.7 |
| MS.gene054875.t1 | MTR_0049s0110 | 28.302 | 212 | 122 | 8 | 7 | 213 | 9 | 195 | 4.26e-12 | 69.3 |
| MS.gene054875.t1 | MTR_0049s0110 | 28.302 | 212 | 122 | 8 | 7 | 213 | 9 | 195 | 5.50e-12 | 69.7 |
| MS.gene054875.t1 | MTR_0049s0110 | 28.302 | 212 | 122 | 8 | 7 | 213 | 9 | 195 | 6.10e-12 | 68.9 |
| MS.gene054875.t1 | MTR_1g016310 | 25.338 | 296 | 199 | 8 | 9 | 300 | 23 | 300 | 7.01e-12 | 68.6 |
| MS.gene054875.t1 | MTR_1g016310 | 27.727 | 220 | 140 | 6 | 9 | 226 | 23 | 225 | 1.10e-11 | 68.9 |
| MS.gene054875.t1 | MTR_5g040850 | 26.506 | 249 | 158 | 7 | 11 | 253 | 12 | 241 | 2.09e-11 | 67.8 |
| MS.gene054875.t1 | MTR_2g047848 | 24.306 | 288 | 180 | 8 | 11 | 279 | 12 | 280 | 5.33e-11 | 66.6 |
| MS.gene054875.t1 | MTR_1g016340 | 27.174 | 276 | 180 | 9 | 9 | 279 | 18 | 277 | 9.56e-11 | 65.9 |
| MS.gene054875.t1 | MTR_1g016340 | 27.174 | 276 | 180 | 9 | 9 | 279 | 23 | 282 | 9.98e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054875.t1 | AT1G13570 | 27.559 | 254 | 156 | 10 | 1 | 252 | 1 | 228 | 3.52e-11 | 65.9 |
| MS.gene054875.t1 | AT1G13570 | 27.559 | 254 | 156 | 10 | 1 | 252 | 1 | 228 | 8.70e-11 | 65.9 |
| MS.gene054875.t1 | AT1G13570 | 27.559 | 254 | 156 | 10 | 1 | 252 | 1 | 228 | 8.70e-11 | 65.9 |
Find 164 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTAACTGTGGGATTCAAAT+TGG | 0.178034 | 7.3:+15635634 | MS.gene054875:CDS |
| GTTAATTGCGGGGTTGAAAT+TGG | 0.183172 | 7.3:+15630351 | MS.gene054875:CDS |
| ATCATAATCTCGACTACTTT+TGG | 0.207236 | 7.3:+15631103 | MS.gene054875:CDS |
| TTGAAACCAGATAAATTTAT+AGG | 0.212278 | 7.3:-15630168 | None:intergenic |
| ATCTTAATAAAGACTACTTT+TGG | 0.243294 | 7.3:+15637487 | MS.gene054875:CDS |
| AGCGAAGCTCAAACATGTTT+TGG | 0.251710 | 7.3:-15634946 | None:intergenic |
| GGCCAAGTTTATAAGGCTTT+TGG | 0.262417 | 7.3:+15635808 | MS.gene054875:CDS |
| CTTGTAGACTTCACCCTTGA+TGG | 0.263552 | 7.3:+15635553 | MS.gene054875:CDS |
| TATGATCTGACAGTTCTTAA+AGG | 0.265374 | 7.3:-15635944 | None:intergenic |
| TATCATCCAACAATTCTTAA+AGG | 0.267997 | 7.3:-15630634 | None:intergenic |
| AATTGAACTCACAATCATTA+AGG | 0.276353 | 7.3:-15630284 | None:intergenic |
| CAATAGAAGTTCAATACTTT+TGG | 0.279741 | 7.3:-15635164 | None:intergenic |
| CGAAGGTGGCCAAGTTTATA+AGG | 0.282650 | 7.3:+15635801 | MS.gene054875:CDS |
| AAAGTTAGGTTTGAAGGATT+TGG | 0.295847 | 7.3:+15634853 | MS.gene054875:intron |
| CATGAATTGATCCAATCTTT+TGG | 0.303146 | 7.3:-15635032 | None:intergenic |
| ATAGCACCTATAAATTTATC+TGG | 0.311525 | 7.3:+15630162 | MS.gene054875:CDS |
| ATCTGAATTTGCCAAAAGAT+TGG | 0.317357 | 7.3:+15635021 | MS.gene054875:CDS |
| TACAACCTGCTAAGGCATTT+AGG | 0.318870 | 7.3:-15638500 | None:intergenic |
| TTAATTGCGGGGTTGAAATT+GGG | 0.320014 | 7.3:+15630352 | MS.gene054875:CDS |
| ATGATGGCATGTCTCCTTAT+AGG | 0.324330 | 7.3:+15630715 | MS.gene054875:CDS |
| TGTAAAGCAGGATTTGCTTC+AGG | 0.326741 | 7.3:+15630224 | MS.gene054875:CDS |
| AATTGAACTTGCAATCATAA+AGG | 0.332753 | 7.3:-15635426 | None:intergenic |
| GTGAAGCAAGATATGCTTCA+TGG | 0.342823 | 7.3:+15635508 | MS.gene054875:CDS |
| GGCTTCACGAATGGAGATTA+AGG | 0.347239 | 7.3:+15634903 | MS.gene054875:CDS |
| CTCTCATCCTTTGAATATAG+TGG | 0.356872 | 7.3:+15630759 | MS.gene054875:CDS |
| TTAACTGTGGGATTCAAATT+GGG | 0.357331 | 7.3:+15635635 | MS.gene054875:CDS |
| CCATTTGCCATTCATCCATA+TGG | 0.361871 | 7.3:+15630858 | MS.gene054875:CDS |
| ATATGTTGTAATCTTGCAAT+TGG | 0.364916 | 7.3:-15636186 | None:intergenic |
| TCAATGTTCATTCTGTGTAT+TGG | 0.366352 | 7.3:-15635727 | None:intergenic |
| ATTTCAAAATCTCAGACAAT+TGG | 0.369850 | 7.3:+15637440 | MS.gene054875:CDS |
| TGGCTCCCTTAGCGATTCCT+TGG | 0.372534 | 7.3:-15635144 | None:intergenic |
| ATTTAAACATTGTTAATTGC+GGG | 0.376208 | 7.3:+15630340 | MS.gene054875:CDS |
| TCAGATTGAAAATTCACATA+TGG | 0.376678 | 7.3:+15632348 | MS.gene054875:intron |
| TCACTATGTTGATTACCTAA+TGG | 0.396330 | 7.3:-15629967 | None:intergenic |
| TTGAGATGCTTGTTGTGTTA+AGG | 0.399194 | 7.3:-15634513 | None:intergenic |
| GATCTATATTCATCACCTAA+TGG | 0.410609 | 7.3:-15635100 | None:intergenic |
| TGGACTCCATGAATGTATTT+CGG | 0.410803 | 7.3:+15630560 | MS.gene054875:CDS |
| AAAAGCCTTCCACTCCTTCA+AGG | 0.411207 | 7.3:+15634992 | MS.gene054875:CDS |
| GCATCAATAGACATCCTATA+AGG | 0.425432 | 7.3:-15630729 | None:intergenic |
| ATTGAACTTGCAATCATAAA+GGG | 0.427289 | 7.3:-15635425 | None:intergenic |
| CCATTCATGAAGCCATCGTT+TGG | 0.427804 | 7.3:-15629761 | None:intergenic |
| GGCTCCCTTAGCGATTCCTT+GGG | 0.432860 | 7.3:-15635143 | None:intergenic |
| GCAATTGGACCAGAGGGAAA+TGG | 0.437535 | 7.3:-15636171 | None:intergenic |
| TGAGATGCTTGTTGTGTTAA+GGG | 0.437748 | 7.3:-15634512 | None:intergenic |
| ATGGAAAATTCACATATGAT+TGG | 0.439169 | 7.3:+15632367 | MS.gene054875:CDS |
| AGAGAAATTAGCAGAGGTAT+TGG | 0.441283 | 7.3:+15631029 | MS.gene054875:CDS |
| AGCGGAATTAAAGAAGATCT+TGG | 0.445739 | 7.3:+15637413 | MS.gene054875:CDS |
| ATTGAACTCACAATCATTAA+GGG | 0.446724 | 7.3:-15630283 | None:intergenic |
| AAATTTAGAGCTATTTATTG+AGG | 0.448634 | 7.3:+15631071 | MS.gene054875:CDS |
| TAATTGCGGGGTTGAAATTG+GGG | 0.450176 | 7.3:+15630353 | MS.gene054875:CDS |
| ATCGGAATTCGTCACAAGAA+TGG | 0.456875 | 7.3:+15629888 | MS.gene054875:CDS |
| CTCTCATCCTTTGAATATAG+TGG | 0.457170 | 7.3:+15636069 | MS.gene054875:CDS |
| ATCCAAAAGCCTTATAAACT+TGG | 0.460321 | 7.3:-15635810 | None:intergenic |
| ATTCAGATTGAAACCCTTGA+AGG | 0.460693 | 7.3:-15635006 | None:intergenic |
| ACGTCACCTTTAAGAATTGT+TGG | 0.460869 | 7.3:+15630628 | MS.gene054875:CDS |
| TGTTGTCCGAAATACATTCA+TGG | 0.461388 | 7.3:-15630566 | None:intergenic |
| CCAAACGATGGCTTCATGAA+TGG | 0.461815 | 7.3:+15629761 | MS.gene054875:CDS |
| GTAAAGCAGGATTTGCTTCA+GGG | 0.464723 | 7.3:+15630225 | MS.gene054875:CDS |
| TACGGCCCCAAGTTTATTGA+AGG | 0.470617 | 7.3:+15636116 | MS.gene054875:CDS |
| TCTACCTCTGTAGCTAAACT+TGG | 0.474315 | 7.3:-15630478 | None:intergenic |
| ATATAAAGTAAGCTTCCATA+TGG | 0.474931 | 7.3:-15630873 | None:intergenic |
| GTGACGACGATTATGTTTGA+TGG | 0.480760 | 7.3:+15635850 | MS.gene054875:CDS |
| TATTACAGTCAAACATGTTA+CGG | 0.483395 | 7.3:-15629813 | None:intergenic |
| ATCCTTTGAATATAGTGGTC+AGG | 0.483396 | 7.3:+15636074 | MS.gene054875:CDS |
| GACAAGATATATCTTTGTTA+CGG | 0.485459 | 7.3:+15636098 | MS.gene054875:CDS |
| AGAAGTCCATAGGTGCTACT+AGG | 0.490073 | 7.3:-15635300 | None:intergenic |
| ACTACCTCTGTAGCTAAACT+TGG | 0.490385 | 7.3:-15635764 | None:intergenic |
| ATGCTCAAATGACGTAGCTT+CGG | 0.491534 | 7.3:-15630678 | None:intergenic |
| ATATTCGATATAACACAATC+TGG | 0.493160 | 7.3:-15629691 | None:intergenic |
| GCATCTTGTTGTTGTAAAGC+AGG | 0.493856 | 7.3:+15630212 | MS.gene054875:CDS |
| GGCAAATGGAGTTTCTTCTC+TGG | 0.494873 | 7.3:-15630844 | None:intergenic |
| TAAAGGTGACGTTCTCAAGT+TGG | 0.495451 | 7.3:-15635927 | None:intergenic |
| GTAGCACCTATGGACTTCTC+TGG | 0.495732 | 7.3:+15635304 | MS.gene054875:CDS |
| AGTCTAAAGACAAATTTGTA+TGG | 0.496604 | 7.3:-15630087 | None:intergenic |
| CACCTAATGGAAAATTTACT+CGG | 0.497338 | 7.3:-15635087 | None:intergenic |
| TTGCACCTAAATGCCTTAGC+AGG | 0.497618 | 7.3:+15638495 | MS.gene054875:CDS |
| AGAGTCATGGAAAATTTGTA+TGG | 0.498068 | 7.3:-15635229 | None:intergenic |
| TAAGCTTCCATATGGATGAA+TGG | 0.498427 | 7.3:-15630865 | None:intergenic |
| AATTTAGAGCTATTTATTGA+GGG | 0.499343 | 7.3:+15631072 | MS.gene054875:CDS |
| CCATATGGATGAATGGCAAA+TGG | 0.500728 | 7.3:-15630858 | None:intergenic |
| CATTTAAACATTGTTAATTG+CGG | 0.506294 | 7.3:+15630339 | MS.gene054875:CDS |
| ATTTGAACATTGTTAACTGT+GGG | 0.510021 | 7.3:+15635623 | MS.gene054875:CDS |
| TTCTGAATGTCTCCAACTTG+AGG | 0.511702 | 7.3:+15630605 | MS.gene054875:CDS |
| TATGATTATGAGCACTTCAC+AGG | 0.515051 | 7.3:+15630908 | MS.gene054875:CDS |
| GTCATATGAAACAAACGATA+GGG | 0.515237 | 7.3:+15635186 | MS.gene054875:CDS |
| GTGCTGCCTAGTAGCACCTA+TGG | 0.515710 | 7.3:+15635294 | MS.gene054875:CDS |
| ACAATTGAAAGAGTATTCAA+TGG | 0.517553 | 7.3:-15635698 | None:intergenic |
| CCATTCGTGAAGCCACCGCT+TGG | 0.518737 | 7.3:-15634894 | None:intergenic |
| AAAGCTGAACAACAACAGAT+TGG | 0.520755 | 7.3:-15635888 | None:intergenic |
| CAAGCATCTCAATTCAAACT+AGG | 0.522215 | 7.3:+15634524 | MS.gene054875:CDS |
| ATAATTGATTGTGGCTATGA+TGG | 0.523820 | 7.3:+15630699 | MS.gene054875:CDS |
| TTATGCTGTGAGGATGTTCA+TGG | 0.526795 | 7.3:-15636029 | None:intergenic |
| GATGAATATAGATCGGTCAT+TGG | 0.530899 | 7.3:+15635109 | MS.gene054875:CDS |
| CATTTGAGCATAATTGATTG+TGG | 0.533127 | 7.3:+15630690 | MS.gene054875:CDS |
| AAAGCCTTCCACTCCTTCAA+GGG | 0.534990 | 7.3:+15634993 | MS.gene054875:CDS |
| GTGAAGCAGGATATGCTTCA+TGG | 0.537099 | 7.3:+15635367 | MS.gene054875:CDS |
| TTGTAAGTTCAACTCTGACT+TGG | 0.539140 | 7.3:+15635576 | MS.gene054875:CDS |
| TAAAGGTGACGTCCTCAAGT+TGG | 0.541407 | 7.3:-15630617 | None:intergenic |
| ATTGGTAGATTGATTTCCCA+AGG | 0.543308 | 7.3:+15635127 | MS.gene054875:CDS |
| AGGAAAAGAAGAGAATATGC+AGG | 0.544808 | 7.3:+15632397 | MS.gene054875:CDS |
| TAATGCTCCAAGGTTATCAA+AGG | 0.545010 | 7.3:+15630803 | MS.gene054875:CDS |
| TCAATTGAATATTCTTGCAA+TGG | 0.545122 | 7.3:+15630414 | MS.gene054875:CDS |
| TAACTGTGGGATTCAAATTG+GGG | 0.546856 | 7.3:+15635636 | MS.gene054875:CDS |
| TGTTCATTGAGTGTACTTCA+CGG | 0.547219 | 7.3:-15630437 | None:intergenic |
| GTCTACAAGATGGATGCAGC+TGG | 0.548530 | 7.3:-15630256 | None:intergenic |
| CCACCGCTTGGACAATGCAC+TGG | 0.548700 | 7.3:-15634882 | None:intergenic |
| CCAAGCGGTGGCTTCACGAA+TGG | 0.552264 | 7.3:+15634894 | MS.gene054875:CDS |
| TTGTGTTAAGGGGACCGACT+TGG | 0.552323 | 7.3:-15634501 | None:intergenic |
| CAATTGATGCTGAAATATCA+AGG | 0.552746 | 7.3:+15629913 | MS.gene054875:CDS |
| GTCTACAAGATGGATGCAGT+TGG | 0.552883 | 7.3:-15635398 | None:intergenic |
| GTCTACAAGATGGATGCAGT+TGG | 0.552883 | 7.3:-15635539 | None:intergenic |
| GATTGAAACCCTTGAAGGAG+TGG | 0.555439 | 7.3:-15635001 | None:intergenic |
| CGTGTAACCACTATATTCAA+AGG | 0.556800 | 7.3:-15630766 | None:intergenic |
| GTGACAACAATTGTGTTCGA+TGG | 0.559994 | 7.3:+15630540 | MS.gene054875:CDS |
| TGTCATATGAAACAAACGAT+AGG | 0.560117 | 7.3:+15635185 | MS.gene054875:CDS |
| CAACAGATTGGAGACATTCA+CGG | 0.560501 | 7.3:-15635876 | None:intergenic |
| GCATCTAGTTGATGTGAAGC+AGG | 0.560901 | 7.3:+15635354 | MS.gene054875:CDS |
| CGCCTGACCACTATATTCAA+AGG | 0.561277 | 7.3:-15636076 | None:intergenic |
| CAATTGGAGTTATTTATCGA+GGG | 0.561755 | 7.3:+15637456 | MS.gene054875:CDS |
| AAGCATGTTACAACCTGCTA+AGG | 0.562192 | 7.3:-15638508 | None:intergenic |
| CATGATCCGTTCACTTCGAG+TGG | 0.563184 | 7.3:+15629939 | MS.gene054875:CDS |
| TTGAAATATGTAGAGTTGCA+TGG | 0.568499 | 7.3:+15632436 | MS.gene054875:CDS |
| AGTTGAACTTACAACCATCA+AGG | 0.569358 | 7.3:-15635567 | None:intergenic |
| GAAACCCTTGAAGGAGTGGA+AGG | 0.571160 | 7.3:-15634997 | None:intergenic |
| ATTTCCCAAGGAATCGCTAA+GGG | 0.576777 | 7.3:+15635139 | MS.gene054875:CDS |
| GTTAAGGGGACCGACTTGGA+TGG | 0.578079 | 7.3:-15634497 | None:intergenic |
| ACAATTGGAGTTATTTATCG+AGG | 0.578365 | 7.3:+15637455 | MS.gene054875:CDS |
| TATTCTCTGTTAATGCTCCA+AGG | 0.578390 | 7.3:+15630793 | MS.gene054875:CDS |
| TAAGGGTGAAGTCTACAAGA+TGG | 0.582003 | 7.3:-15630266 | None:intergenic |
| GATTTCCCAAGGAATCGCTA+AGG | 0.584423 | 7.3:+15635138 | MS.gene054875:CDS |
| CACATATGATTGGACTTCAG+AGG | 0.586014 | 7.3:+15632377 | MS.gene054875:CDS |
| TCACGAATGGAGATTAAGGA+TGG | 0.590728 | 7.3:+15634907 | MS.gene054875:CDS |
| TTCAAACCAGAGAAGTCCAT+AGG | 0.592725 | 7.3:-15635310 | None:intergenic |
| AAAGGGTCAAGTCTACAAGA+TGG | 0.593500 | 7.3:-15635408 | None:intergenic |
| AATTTGAACATTGTTAACTG+TGG | 0.594112 | 7.3:+15635622 | MS.gene054875:CDS |
| TGTTACGGAGATCAAAATTG+AGG | 0.594580 | 7.3:-15629798 | None:intergenic |
| TTTAAACATTGTTAATTGCG+GGG | 0.594670 | 7.3:+15630341 | MS.gene054875:CDS |
| CAAGGGTGAAGTCTACAAGA+TGG | 0.595854 | 7.3:-15635549 | None:intergenic |
| ATTAGGTGATGAATATAGAT+CGG | 0.596894 | 7.3:+15635102 | MS.gene054875:CDS |
| TTGCGGGGTTGAAATTGGGG+AGG | 0.603541 | 7.3:+15630356 | MS.gene054875:CDS |
| GAAAATCCACTCGAAGTGAA+CGG | 0.606801 | 7.3:-15629945 | None:intergenic |
| TTATCCAAGTTTAGCTACAG+AGG | 0.607441 | 7.3:+15630474 | MS.gene054875:CDS |
| TTATCCAAGTTTAGCTACAG+AGG | 0.607441 | 7.3:+15635760 | MS.gene054875:CDS |
| AGACATTCAGAAAACAAATG+AGG | 0.612064 | 7.3:-15630594 | None:intergenic |
| AATCTTGCAATTGGACCAGA+GGG | 0.612559 | 7.3:-15636177 | None:intergenic |
| TGACGACGATTATGTTTGAT+GGG | 0.616531 | 7.3:+15635851 | MS.gene054875:CDS |
| CTAATTTCTAGCTACGAAGG+TGG | 0.626572 | 7.3:+15635787 | MS.gene054875:CDS |
| TAATCTTGCAATTGGACCAG+AGG | 0.628915 | 7.3:-15636178 | None:intergenic |
| AGTCTAATTTCTAGCTACGA+AGG | 0.634366 | 7.3:+15635784 | MS.gene054875:CDS |
| TTGGTTGTTGTAGAAGACGC+TGG | 0.634527 | 7.3:-15634564 | None:intergenic |
| GAGATGCTTGTTGTGTTAAG+GGG | 0.644855 | 7.3:-15634511 | None:intergenic |
| AGTGTGAGATAAGAGAGTCA+TGG | 0.647270 | 7.3:-15635242 | None:intergenic |
| ACAGGTAGAGAAATTAGCAG+AGG | 0.648016 | 7.3:+15631023 | MS.gene054875:intron |
| CAAGTGTATTATCCAAACGA+TGG | 0.659474 | 7.3:+15629749 | MS.gene054875:CDS |
| GTTGAACTTACAACCATCAA+GGG | 0.663328 | 7.3:-15635566 | None:intergenic |
| AAACCAGTGCATTGTCCAAG+CGG | 0.666940 | 7.3:+15634879 | MS.gene054875:CDS |
| TTGAATATAGTGGTTACACG+AGG | 0.667234 | 7.3:+15630769 | MS.gene054875:CDS |
| AACTGTGGGATTCAAATTGG+GGG | 0.671842 | 7.3:+15635637 | MS.gene054875:CDS |
| AATACACAGAATGAACATTG+AGG | 0.672085 | 7.3:+15635729 | MS.gene054875:CDS |
| CCAGTGCATTGTCCAAGCGG+TGG | 0.678908 | 7.3:+15634882 | MS.gene054875:CDS |
| AGTACACTCAATGAACATTG+AGG | 0.679605 | 7.3:+15630443 | MS.gene054875:CDS |
| ATGTTTAAATGAAACAACGT+CGG | 0.680399 | 7.3:-15630327 | None:intergenic |
| TGAATATAGTGGTTACACGA+GGG | 0.696995 | 7.3:+15630770 | MS.gene054875:CDS |
| GCATCAATAGTTATGCTGTG+AGG | 0.778101 | 7.3:-15636039 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 15629658 | 15638554 | 15629658 | ID=MS.gene054875 |
| chr7.3 | mRNA | 15629658 | 15638554 | 15629658 | ID=MS.gene054875.t1;Parent=MS.gene054875 |
| chr7.3 | exon | 15629658 | 15630929 | 15629658 | ID=MS.gene054875.t1.exon1;Parent=MS.gene054875.t1 |
| chr7.3 | CDS | 15629658 | 15630929 | 15629658 | ID=cds.MS.gene054875.t1;Parent=MS.gene054875.t1 |
| chr7.3 | exon | 15631027 | 15631176 | 15631027 | ID=MS.gene054875.t1.exon2;Parent=MS.gene054875.t1 |
| chr7.3 | CDS | 15631027 | 15631176 | 15631027 | ID=cds.MS.gene054875.t1;Parent=MS.gene054875.t1 |
| chr7.3 | exon | 15632352 | 15632460 | 15632352 | ID=MS.gene054875.t1.exon3;Parent=MS.gene054875.t1 |
| chr7.3 | CDS | 15632352 | 15632460 | 15632352 | ID=cds.MS.gene054875.t1;Parent=MS.gene054875.t1 |
| chr7.3 | exon | 15634492 | 15634586 | 15634492 | ID=MS.gene054875.t1.exon4;Parent=MS.gene054875.t1 |
| chr7.3 | CDS | 15634492 | 15634586 | 15634492 | ID=cds.MS.gene054875.t1;Parent=MS.gene054875.t1 |
| chr7.3 | exon | 15634857 | 15636242 | 15634857 | ID=MS.gene054875.t1.exon5;Parent=MS.gene054875.t1 |
| chr7.3 | CDS | 15634857 | 15636242 | 15634857 | ID=cds.MS.gene054875.t1;Parent=MS.gene054875.t1 |
| chr7.3 | exon | 15637411 | 15637560 | 15637411 | ID=MS.gene054875.t1.exon6;Parent=MS.gene054875.t1 |
| chr7.3 | CDS | 15637411 | 15637560 | 15637411 | ID=cds.MS.gene054875.t1;Parent=MS.gene054875.t1 |
| chr7.3 | exon | 15638462 | 15638554 | 15638462 | ID=MS.gene054875.t1.exon7;Parent=MS.gene054875.t1 |
| chr7.3 | CDS | 15638462 | 15638554 | 15638462 | ID=cds.MS.gene054875.t1;Parent=MS.gene054875.t1 |
| Gene Sequence |
| Protein sequence |
