Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50691.t1 | XP_003607095.2 | 97.8 | 273 | 6 | 0 | 1 | 273 | 1 | 273 | 2.50E-151 | 544.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50691.t1 | Q9FH40 | 66.5 | 272 | 86 | 1 | 1 | 272 | 1 | 267 | 6.1e-106 | 385.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50691.t1 | G7JL17 | 97.8 | 273 | 6 | 0 | 1 | 273 | 1 | 273 | 1.8e-151 | 544.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene60120 | MS.gene50691 | PPI |
| MS.gene88495 | MS.gene50691 | PPI |
| MS.gene50691 | MS.gene056230 | PPI |
| MS.gene50691 | MS.gene016608 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50691.t1 | MTR_4g072210 | 97.802 | 273 | 6 | 0 | 1 | 273 | 1 | 273 | 0.0 | 553 |
| MS.gene50691.t1 | MTR_5g021980 | 70.886 | 237 | 67 | 1 | 32 | 266 | 36 | 272 | 5.43e-127 | 362 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50691.t1 | AT5G45600 | 68.382 | 272 | 81 | 1 | 1 | 272 | 1 | 267 | 4.56e-144 | 405 |
| MS.gene50691.t1 | AT5G45600 | 68.382 | 272 | 80 | 1 | 1 | 272 | 1 | 266 | 8.21e-144 | 404 |
| MS.gene50691.t1 | AT2G18000 | 58.750 | 240 | 97 | 1 | 33 | 270 | 24 | 263 | 7.58e-105 | 306 |
| MS.gene50691.t1 | AT2G18000 | 58.889 | 180 | 72 | 1 | 27 | 204 | 18 | 197 | 1.24e-78 | 236 |
Find 60 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCTGCTTCTGAGAAATTC+AGG | 0.264995 | 4.3:-33573513 | None:intergenic |
| TATTTCTCACCCAATCAAAA+TGG | 0.267469 | 4.3:+33571366 | MS.gene50691:CDS |
| TATACGGGAACGTAGCATTT+TGG | 0.267574 | 4.3:+33572287 | MS.gene50691:CDS |
| TTCAGGAACCATTGGCTTAA+GGG | 0.287646 | 4.3:-33573496 | None:intergenic |
| ATTAGTGTTCCAATAGTATA+CGG | 0.306773 | 4.3:+33572271 | MS.gene50691:CDS |
| ATTCAGGAACCATTGGCTTA+AGG | 0.353599 | 4.3:-33573497 | None:intergenic |
| GCTACGTTCCCGTATACTAT+TGG | 0.356357 | 4.3:-33572280 | None:intergenic |
| GTCCATCTATCAAACTTATC+TGG | 0.361292 | 4.3:-33575708 | None:intergenic |
| AAGGAACTGCCTTCATCATC+TGG | 0.371847 | 4.3:-33573195 | None:intergenic |
| GCTGGCAGCAGCTCGTCAGC+AGG | 0.387535 | 4.3:+33573546 | MS.gene50691:CDS |
| AGTCTTGGCATGTTCACAAC+TGG | 0.396171 | 4.3:-33573309 | None:intergenic |
| AACAGGCTTCTTTGTGGAAA+AGG | 0.415370 | 4.3:-33573214 | None:intergenic |
| CACAACAACAGGCTTCTTTG+TGG | 0.416649 | 4.3:-33573220 | None:intergenic |
| CTGAGAAATTCAGGAACCAT+TGG | 0.419880 | 4.3:-33573504 | None:intergenic |
| TCATAAAATTCCACAACAAC+AGG | 0.422701 | 4.3:-33573231 | None:intergenic |
| GGAGGCAAGGTAAGCCCAGC+AGG | 0.425533 | 4.3:-33573333 | None:intergenic |
| TAATTATATGTCTATTGGTC+AGG | 0.426268 | 4.3:-33575754 | None:intergenic |
| CGCCAGATAAGTTTGATAGA+TGG | 0.434906 | 4.3:+33575706 | MS.gene50691:CDS |
| CACAAAGAAGCCTGTTGTTG+TGG | 0.444280 | 4.3:+33573221 | MS.gene50691:CDS |
| TGGAGCATCCAACGAGGACC+TGG | 0.447185 | 4.3:+33572485 | MS.gene50691:CDS |
| TACCTTCTTATCATTGTCAT+CGG | 0.494938 | 4.3:-33571395 | None:intergenic |
| CGTTTACTAGCATCTTCGAT+TGG | 0.501880 | 4.3:-33573448 | None:intergenic |
| GTAAGCCCAGCAGGTAGTCT+TGG | 0.502144 | 4.3:-33573324 | None:intergenic |
| CAATCGAAGATGCTAGTAAA+CGG | 0.502979 | 4.3:+33573449 | MS.gene50691:CDS |
| CAAGATCAGTCTCAATTAAG+TGG | 0.506486 | 4.3:+33571334 | MS.gene50691:CDS |
| TGAGTTATCAGAGGCAGGAT+GGG | 0.507588 | 4.3:+33572587 | MS.gene50691:CDS |
| ATTTCTCACCCAATCAAAAT+GGG | 0.508818 | 4.3:+33571367 | MS.gene50691:CDS |
| AGCAGATGAACTCTTGCAGC+TGG | 0.510733 | 4.3:+33573528 | MS.gene50691:CDS |
| CAAGGTATCAATCACATAAG+TGG | 0.515392 | 4.3:+33572448 | MS.gene50691:intron |
| TTGAGTTATCAGAGGCAGGA+TGG | 0.518416 | 4.3:+33572586 | MS.gene50691:CDS |
| CCTGCCTCTGATAACTCAAA+AGG | 0.519422 | 4.3:-33572582 | None:intergenic |
| ATCCGATGACAATGATAAGA+AGG | 0.520538 | 4.3:+33571393 | MS.gene50691:CDS |
| CAATAATCCCACAAGGATTG+TGG | 0.525358 | 4.3:+33572551 | MS.gene50691:CDS |
| TTTGATTGGGTGAGAAATAG+GGG | 0.531862 | 4.3:-33571362 | None:intergenic |
| GAGTTATCAGAGGCAGGATG+GGG | 0.541531 | 4.3:+33572588 | MS.gene50691:CDS |
| GGAGCATCCAACGAGGACCT+GGG | 0.547877 | 4.3:+33572486 | MS.gene50691:CDS |
| GTCTTGGCATGTTCACAACT+GGG | 0.560043 | 4.3:-33573308 | None:intergenic |
| GGTGCATCCACAATCCTTGT+GGG | 0.565259 | 4.3:-33572558 | None:intergenic |
| AAGATAATCCCTTAAGCCAA+TGG | 0.568475 | 4.3:+33573488 | MS.gene50691:CDS |
| AAGTGGACTATATATGTTCG+TGG | 0.581227 | 4.3:+33572465 | MS.gene50691:CDS |
| GAGCATCCAACGAGGACCTG+GGG | 0.590570 | 4.3:+33572487 | MS.gene50691:CDS |
| AACATGCCAAGACTACCTGC+TGG | 0.595578 | 4.3:+33573318 | MS.gene50691:CDS |
| TTAGTGTTCCAATAGTATAC+GGG | 0.596441 | 4.3:+33572272 | MS.gene50691:CDS |
| AGGTGCATCCACAATCCTTG+TGG | 0.606632 | 4.3:-33572559 | None:intergenic |
| CAAACGACTCACAAGTTCAC+AGG | 0.610052 | 4.3:-33572663 | None:intergenic |
| AATTGCAACATACTAGGAGG+AGG | 0.617293 | 4.3:-33573351 | None:intergenic |
| TATACAGATATCATCAGTTG+AGG | 0.617329 | 4.3:+33573166 | MS.gene50691:intron |
| CAACATACTAGGAGGAGGCA+AGG | 0.625441 | 4.3:-33573346 | None:intergenic |
| ACATGCCAAGACTACCTGCT+GGG | 0.629730 | 4.3:+33573319 | MS.gene50691:CDS |
| AGGTTGTATCCAGATGATGA+AGG | 0.632066 | 4.3:+33573186 | MS.gene50691:CDS |
| ATTGGGTGAGAAATAGGGGT+GGG | 0.632597 | 4.3:-33571358 | None:intergenic |
| GATTGGGTGAGAAATAGGGG+TGG | 0.652805 | 4.3:-33571359 | None:intergenic |
| GCCTCTGATAACTCAAAAGG+AGG | 0.653413 | 4.3:-33572579 | None:intergenic |
| CTAGTTTCAATAATCCCACA+AGG | 0.653695 | 4.3:+33572544 | MS.gene50691:CDS |
| GATGCTAGTAAACGGAGGAG+AGG | 0.657501 | 4.3:+33573457 | MS.gene50691:CDS |
| ACTGTGGAAATAAAGTGTGA+TGG | 0.663057 | 4.3:-33572625 | None:intergenic |
| AGCATCCAACGAGGACCTGG+GGG | 0.700369 | 4.3:+33572488 | MS.gene50691:CDS |
| TCGAAGATGCTAGTAAACGG+AGG | 0.723176 | 4.3:+33573452 | MS.gene50691:CDS |
| TGTTCGTGGAGCATCCAACG+AGG | 0.768144 | 4.3:+33572479 | MS.gene50691:CDS |
| GCTTGTCGCAAACATCACTG+TGG | 0.771336 | 4.3:-33572641 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGTAAAAGAAAAAAATAA+AGG | - | chr4.3:33571843-33571862 | None:intergenic | 10.0% |
| !! | TTATCATTATTAATAAAATG+CGG | - | chr4.3:33572935-33572954 | None:intergenic | 10.0% |
| !!! | ATTTAATCTTTTAGTTATTT+AGG | + | chr4.3:33574320-33574339 | MS.gene50691:intron | 10.0% |
| !!! | TTTTTCTTAAATAAGATTAT+TGG | + | chr4.3:33573985-33574004 | MS.gene50691:intron | 10.0% |
| !! | AATAAATGTATTGCTTAAAT+GGG | + | chr4.3:33572375-33572394 | MS.gene50691:intron | 15.0% |
| !! | AATAATAAAATACAAGGAAA+AGG | - | chr4.3:33575197-33575216 | None:intergenic | 15.0% |
| !! | AATATGCTTAAATAAATTTC+TGG | + | chr4.3:33574231-33574250 | MS.gene50691:intron | 15.0% |
| !! | ATCTATTCTAATTAATACAA+AGG | - | chr4.3:33573956-33573975 | None:intergenic | 15.0% |
| !! | CAACTTAATAATAAAATACA+AGG | - | chr4.3:33575203-33575222 | None:intergenic | 15.0% |
| !! | TAATAAATGTATTGCTTAAA+TGG | + | chr4.3:33572374-33572393 | MS.gene50691:intron | 15.0% |
| !! | TTAATTAAAACAACAATTGA+AGG | - | chr4.3:33572353-33572372 | None:intergenic | 15.0% |
| !! | TTCAAATAAATATATCATCA+TGG | - | chr4.3:33573637-33573656 | None:intergenic | 15.0% |
| !!! | ATATTTTGAATAAAACCATT+TGG | - | chr4.3:33574050-33574069 | None:intergenic | 15.0% |
| !!! | ATTAAAAAGTTAGTTTAACT+AGG | + | chr4.3:33574466-33574485 | MS.gene50691:intron | 15.0% |
| !!! | TATTATTTTTTTGTAGAACT+CGG | + | chr4.3:33572225-33572244 | MS.gene50691:intron | 15.0% |
| !!! | TTAAAAAGTTAGTTTAACTA+GGG | + | chr4.3:33574467-33574486 | MS.gene50691:intron | 15.0% |
| !! | AAAGAAAATATTTAGGAAAG+AGG | - | chr4.3:33574531-33574550 | None:intergenic | 20.0% |
| !! | AAAGCTTCAAATTTGAATAA+AGG | - | chr4.3:33571509-33571528 | None:intergenic | 20.0% |
| !! | AAATTGAAGAAAGATAATAG+AGG | - | chr4.3:33574820-33574839 | None:intergenic | 20.0% |
| !! | AACATATAATCAAGAATCTT+CGG | + | chr4.3:33573829-33573848 | MS.gene50691:intron | 20.0% |
| !! | AAGTTAATTCTATCATCAAA+AGG | + | chr4.3:33575303-33575322 | MS.gene50691:intron | 20.0% |
| !! | AATTTGCACTGAATATTTAA+TGG | + | chr4.3:33574501-33574520 | MS.gene50691:intron | 20.0% |
| !! | AGTTAATTCTATCATCAAAA+GGG | + | chr4.3:33575304-33575323 | MS.gene50691:intron | 20.0% |
| !! | ATAAATGTATTGCTTAAATG+GGG | + | chr4.3:33572376-33572395 | MS.gene50691:intron | 20.0% |
| !! | ATTATCTTTCTTCAATTTAC+AGG | + | chr4.3:33574822-33574841 | MS.gene50691:intron | 20.0% |
| !! | CAGAAATAAAAAGTAAATCA+TGG | - | chr4.3:33575098-33575117 | None:intergenic | 20.0% |
| !! | GAAGAACAAAGAAAATATTT+AGG | - | chr4.3:33574538-33574557 | None:intergenic | 20.0% |
| !! | TAAATCATTTAGTTACAAAC+AGG | - | chr4.3:33574743-33574762 | None:intergenic | 20.0% |
| !! | TAATTCAATTCAATTCAATC+AGG | - | chr4.3:33572000-33572019 | None:intergenic | 20.0% |
| !! | TGTTCTAATAATTTCTATGT+GGG | + | chr4.3:33574162-33574181 | MS.gene50691:intron | 20.0% |
| !! | TTGTTCTAATAATTTCTATG+TGG | + | chr4.3:33574161-33574180 | MS.gene50691:intron | 20.0% |
| !!! | AATGAATAATTTTCAAGCAT+TGG | - | chr4.3:33573028-33573047 | None:intergenic | 20.0% |
| !!! | ATTATTTTTTTGTAGAACTC+GGG | + | chr4.3:33572226-33572245 | MS.gene50691:intron | 20.0% |
| !!! | ATTTTGACATTCACAAAATA+TGG | - | chr4.3:33573109-33573128 | None:intergenic | 20.0% |
| !!! | GAATTGTTCAAACAATTTTT+TGG | + | chr4.3:33571953-33571972 | MS.gene50691:intron | 20.0% |
| !!! | TTTTACTCAAATAAGATTGT+TGG | + | chr4.3:33574689-33574708 | MS.gene50691:intron | 20.0% |
| ! | AACAATTTACAGCAAGTATA+TGG | + | chr4.3:33573665-33573684 | MS.gene50691:intron | 25.0% |
| ! | AAGATGTAATAAGTATCAGT+TGG | - | chr4.3:33575646-33575665 | None:intergenic | 25.0% |
| ! | AAGTACCATATGTAAAAGTA+AGG | - | chr4.3:33574391-33574410 | None:intergenic | 25.0% |
| ! | AATAAGCTAAAAACATCGTA+AGG | - | chr4.3:33571767-33571786 | None:intergenic | 25.0% |
| ! | ACATCCATTATTATCAATTG+TGG | + | chr4.3:33574950-33574969 | MS.gene50691:intron | 25.0% |
| ! | ACGTTAATTAAACTCAAATG+TGG | - | chr4.3:33573406-33573425 | None:intergenic | 25.0% |
| ! | ATTAGTGTTCCAATAGTATA+CGG | + | chr4.3:33572271-33572290 | MS.gene50691:CDS | 25.0% |
| ! | CAATGAATAATCACAAAAGT+GGG | - | chr4.3:33573917-33573936 | None:intergenic | 25.0% |
| ! | CATCCATTATTATCAATTGT+GGG | + | chr4.3:33574951-33574970 | MS.gene50691:intron | 25.0% |
| ! | CCATTATCATCAATATATTG+TGG | + | chr4.3:33574132-33574151 | MS.gene50691:intron | 25.0% |
| ! | GACAATGTTTATGTTATACA+AGG | + | chr4.3:33572430-33572449 | MS.gene50691:intron | 25.0% |
| ! | GTTAATGATATGTAACAAAC+AGG | - | chr4.3:33572818-33572837 | None:intergenic | 25.0% |
| ! | GTTCTAATAATTTCTATGTG+GGG | + | chr4.3:33574163-33574182 | MS.gene50691:intron | 25.0% |
| ! | TACAGACTTCATTATTAGTA+AGG | - | chr4.3:33573697-33573716 | None:intergenic | 25.0% |
| ! | TCAATGAATAATCACAAAAG+TGG | - | chr4.3:33573918-33573937 | None:intergenic | 25.0% |
| ! | TCATCAATATATTGTGGATT+AGG | + | chr4.3:33574138-33574157 | MS.gene50691:intron | 25.0% |
| ! | TGATTATATGTTTAGAAGTG+TGG | - | chr4.3:33573821-33573840 | None:intergenic | 25.0% |
| ! | TTATTTGAGCTTATCTATTG+AGG | + | chr4.3:33572017-33572036 | MS.gene50691:intron | 25.0% |
| !! | AGCATTTTGAATATTAAGCT+AGG | - | chr4.3:33575003-33575022 | None:intergenic | 25.0% |
| !! | ATCATTTAAGGATTTGTTTC+TGG | + | chr4.3:33574106-33574125 | MS.gene50691:intron | 25.0% |
| !! | CCACAATATATTGATGATAA+TGG | - | chr4.3:33574135-33574154 | None:intergenic | 25.0% |
| !! | TCAAATTTGAAGCTTTGATT+TGG | + | chr4.3:33571513-33571532 | MS.gene50691:intron | 25.0% |
| !! | TGTATGTTTTCAAAAATCAC+AGG | + | chr4.3:33575356-33575375 | MS.gene50691:intron | 25.0% |
| !!! | CTTAAATAAATTTCTGGTCT+TGG | + | chr4.3:33574237-33574256 | MS.gene50691:intron | 25.0% |
| !!! | GAAGTACACATTTTTTTGTA+AGG | - | chr4.3:33574279-33574298 | None:intergenic | 25.0% |
| !!! | GTTGTAAAAAGCGTTATTTT+GGG | - | chr4.3:33571452-33571471 | None:intergenic | 25.0% |
| !!! | TCTTTTATTGATAATGAGCT+TGG | + | chr4.3:33571654-33571673 | MS.gene50691:intron | 25.0% |
| !!! | TGATGTTGTTTTTGATTGAT+GGG | + | chr4.3:33572684-33572703 | MS.gene50691:intron | 25.0% |
| !!! | TTGATGTTGTTTTTGATTGA+TGG | + | chr4.3:33572683-33572702 | MS.gene50691:intron | 25.0% |
| AACAGTGAATAATAGACCTA+TGG | - | chr4.3:33573065-33573084 | None:intergenic | 30.0% | |
| AACTCTACTAATCCCAAAAT+TGG | - | chr4.3:33574638-33574657 | None:intergenic | 30.0% | |
| AGACATTTGTGATACTATCT+GGG | + | chr4.3:33571711-33571730 | MS.gene50691:intron | 30.0% | |
| ATCATACATGTACACATGTT+TGG | + | chr4.3:33573716-33573735 | MS.gene50691:intron | 30.0% | |
| ATGTACAATCGACATTTCTA+GGG | - | chr4.3:33573752-33573771 | None:intergenic | 30.0% | |
| ATTTCTCACCCAATCAAAAT+GGG | + | chr4.3:33571367-33571386 | MS.gene50691:CDS | 30.0% | |
| CACACAAAAAAAATGTGCTA+AGG | + | chr4.3:33572406-33572425 | MS.gene50691:intron | 30.0% | |
| CTATCATCAAAAGGGAAATT+TGG | + | chr4.3:33575312-33575331 | MS.gene50691:intron | 30.0% | |
| GGTTAAACTACTTAGATACA+AGG | + | chr4.3:33575333-33575352 | MS.gene50691:intron | 30.0% | |
| GTTAGATTGAGTTAGTAGTT+TGG | + | chr4.3:33572897-33572916 | MS.gene50691:intron | 30.0% | |
| TACCATATGTAAAAGTAAGG+TGG | - | chr4.3:33574388-33574407 | None:intergenic | 30.0% | |
| TACCTTCTTATCATTGTCAT+CGG | - | chr4.3:33571398-33571417 | None:intergenic | 30.0% | |
| TATACAGATATCATCAGTTG+AGG | + | chr4.3:33573166-33573185 | MS.gene50691:intron | 30.0% | |
| TATTTCTCACCCAATCAAAA+TGG | + | chr4.3:33571366-33571385 | MS.gene50691:CDS | 30.0% | |
| TCAAAGTATGCTCAAAAGTA+GGG | + | chr4.3:33572768-33572787 | MS.gene50691:intron | 30.0% | |
| TCATAAAATTCCACAACAAC+AGG | - | chr4.3:33573234-33573253 | None:intergenic | 30.0% | |
| TCATGGAAACAGTATATCTT+TGG | - | chr4.3:33575081-33575100 | None:intergenic | 30.0% | |
| TTAGTGTTCCAATAGTATAC+GGG | + | chr4.3:33572272-33572291 | MS.gene50691:CDS | 30.0% | |
| TTCAAAGTATGCTCAAAAGT+AGG | + | chr4.3:33572767-33572786 | MS.gene50691:intron | 30.0% | |
| TTGATATACTACATGACCAT+AGG | + | chr4.3:33573046-33573065 | MS.gene50691:intron | 30.0% | |
| TTGTGAGTGTTCATCATTTA+AGG | + | chr4.3:33574094-33574113 | MS.gene50691:intron | 30.0% | |
| TTTATGCACTCCGAAAAAAA+GGG | - | chr4.3:33571479-33571498 | None:intergenic | 30.0% | |
| ! | AACTACTTTGTTTACCCAAA+TGG | - | chr4.3:33575254-33575273 | None:intergenic | 30.0% |
| ! | CATTCTACAGATTGATTTCA+AGG | - | chr4.3:33571563-33571582 | None:intergenic | 30.0% |
| ! | CTATTGAGGTAAACACTTTT+GGG | + | chr4.3:33572031-33572050 | MS.gene50691:intron | 30.0% |
| ! | CTGTTTTCATTAAGCTATCA+TGG | - | chr4.3:33572126-33572145 | None:intergenic | 30.0% |
| ! | TCTATTGAGGTAAACACTTT+TGG | + | chr4.3:33572030-33572049 | MS.gene50691:intron | 30.0% |
| ! | TGACCCACAATTGATAATAA+TGG | - | chr4.3:33574957-33574976 | None:intergenic | 30.0% |
| ! | TGTTGTGGAATTTTATGATG+AGG | + | chr4.3:33573236-33573255 | MS.gene50691:CDS | 30.0% |
| !! | TTCCACCTTACTTTTACATA+TGG | + | chr4.3:33574383-33574402 | MS.gene50691:intron | 30.0% |
| !! | TTTTGATTGGGTGAGAAATA+GGG | - | chr4.3:33571366-33571385 | None:intergenic | 30.0% |
| !! | TTTTGTTTACGTGATGCTTA+TGG | + | chr4.3:33573891-33573910 | MS.gene50691:intron | 30.0% |
| !!! | AGCACATTTTTTTTGTGTGA+AGG | - | chr4.3:33572405-33572424 | None:intergenic | 30.0% |
| !!! | ATTTTGATTGGGTGAGAAAT+AGG | - | chr4.3:33571367-33571386 | None:intergenic | 30.0% |
| !!! | CCTTTGTTTTCATTCAGATT+CGG | + | chr4.3:33571419-33571438 | MS.gene50691:intron | 30.0% |
| !!! | GATGTTGTTTTTGATTGATG+GGG | + | chr4.3:33572685-33572704 | MS.gene50691:intron | 30.0% |
| !!! | GCTTCAACTCTATTTTTGTT+TGG | + | chr4.3:33574599-33574618 | MS.gene50691:intron | 30.0% |
| !!! | GGTTGTAAAAAGCGTTATTT+TGG | - | chr4.3:33571453-33571472 | None:intergenic | 30.0% |
| !!! | TACAACCATACCCTTTTTTT+CGG | + | chr4.3:33571466-33571485 | MS.gene50691:intron | 30.0% |
| AAGATAATCCCTTAAGCCAA+TGG | + | chr4.3:33573488-33573507 | MS.gene50691:CDS | 35.0% | |
| AAGTCGACGAAAATAGTGTA+TGG | + | chr4.3:33575403-33575422 | MS.gene50691:intron | 35.0% | |
| ACTGAACATGGTCAATGATT+TGG | - | chr4.3:33575152-33575171 | None:intergenic | 35.0% | |
| ACTGTGGAAATAAAGTGTGA+TGG | - | chr4.3:33572628-33572647 | None:intergenic | 35.0% | |
| AGAGTTTAGCATACTGAACA+TGG | - | chr4.3:33575164-33575183 | None:intergenic | 35.0% | |
| AGATCACAGTATCACACAAA+AGG | - | chr4.3:33572729-33572748 | None:intergenic | 35.0% | |
| ATCCGATGACAATGATAAGA+AGG | + | chr4.3:33571393-33571412 | MS.gene50691:CDS | 35.0% | |
| ATGGCAAATTGCAACATACT+AGG | - | chr4.3:33573360-33573379 | None:intergenic | 35.0% | |
| ATGTATCTACTTCCGCAAAT+GGG | - | chr4.3:33575525-33575544 | None:intergenic | 35.0% | |
| CAAGATCAGTCTCAATTAAG+TGG | + | chr4.3:33571334-33571353 | MS.gene50691:CDS | 35.0% | |
| CAATCGAAGATGCTAGTAAA+CGG | + | chr4.3:33573449-33573468 | MS.gene50691:CDS | 35.0% | |
| CAATCTAACTGAACTTAGCA+AGG | - | chr4.3:33572886-33572905 | None:intergenic | 35.0% | |
| CAATTCAATCAGGCCAATAA+GGG | - | chr4.3:33571990-33572009 | None:intergenic | 35.0% | |
| CAGACATTTGTGATACTATC+TGG | + | chr4.3:33571710-33571729 | MS.gene50691:intron | 35.0% | |
| CATGTACAATCGACATTTCT+AGG | - | chr4.3:33573753-33573772 | None:intergenic | 35.0% | |
| CCGAATCTGAATGAAAACAA+AGG | - | chr4.3:33571422-33571441 | None:intergenic | 35.0% | |
| CTAGTTTCAATAATCCCACA+AGG | + | chr4.3:33572544-33572563 | MS.gene50691:CDS | 35.0% | |
| CTTTATGCACTCCGAAAAAA+AGG | - | chr4.3:33571480-33571499 | None:intergenic | 35.0% | |
| GATCACAGTATCACACAAAA+GGG | - | chr4.3:33572728-33572747 | None:intergenic | 35.0% | |
| GTCCATCTATCAAACTTATC+TGG | - | chr4.3:33575711-33575730 | None:intergenic | 35.0% | |
| TAAAAAAGCTTCAGAGGGAT+CGG | - | chr4.3:33573271-33573290 | None:intergenic | 35.0% | |
| TCAATTCAATCAGGCCAATA+AGG | - | chr4.3:33571991-33572010 | None:intergenic | 35.0% | |
| TTTGATTGGGTGAGAAATAG+GGG | - | chr4.3:33571365-33571384 | None:intergenic | 35.0% | |
| ! | ATGATGCTTACGTCCAATTT+TGG | + | chr4.3:33574622-33574641 | MS.gene50691:intron | 35.0% |
| ! | CAAGGTATCAATCACATAAG+TGG | + | chr4.3:33572448-33572467 | MS.gene50691:intron | 35.0% |
| ! | GATTCTTGTTTGTGACCAAA+TGG | + | chr4.3:33574032-33574051 | MS.gene50691:intron | 35.0% |
| ! | TGATGCTTACGTCCAATTTT+GGG | + | chr4.3:33574623-33574642 | MS.gene50691:intron | 35.0% |
| ! | TTACATCTTTTCCAATGCGT+AGG | + | chr4.3:33575657-33575676 | MS.gene50691:intron | 35.0% |
| !! | AAGTGGACTATATATGTTCG+TGG | + | chr4.3:33572465-33572484 | MS.gene50691:CDS | 35.0% |
| !! | ATCGTGATTTTTCGAAGATG+AGG | - | chr4.3:33571314-33571333 | None:intergenic | 35.0% |
| !!! | AGGTAAACACTTTTGGGTTT+GGG | + | chr4.3:33572037-33572056 | MS.gene50691:intron | 35.0% |
| AAAAAAGCTTCAGAGGGATC+GGG | - | chr4.3:33573270-33573289 | None:intergenic | 40.0% | |
| AACAGGCTTCTTTGTGGAAA+AGG | - | chr4.3:33573217-33573236 | None:intergenic | 40.0% | |
| AATTGCAACATACTAGGAGG+AGG | - | chr4.3:33573354-33573373 | None:intergenic | 40.0% | |
| ACGAGCTAAAAAAGCTTCAG+AGG | - | chr4.3:33573277-33573296 | None:intergenic | 40.0% | |
| AGGTTGTATCCAGATGATGA+AGG | + | chr4.3:33573186-33573205 | MS.gene50691:CDS | 40.0% | |
| CAAGAATCCTTTACATGCAC+AGG | - | chr4.3:33574020-33574039 | None:intergenic | 40.0% | |
| CAATAATCCCACAAGGATTG+TGG | + | chr4.3:33572551-33572570 | MS.gene50691:CDS | 40.0% | |
| CATGTATCTACTTCCGCAAA+TGG | - | chr4.3:33575526-33575545 | None:intergenic | 40.0% | |
| CGAGCTAAAAAAGCTTCAGA+GGG | - | chr4.3:33573276-33573295 | None:intergenic | 40.0% | |
| CGCCAGATAAGTTTGATAGA+TGG | + | chr4.3:33575706-33575725 | MS.gene50691:CDS | 40.0% | |
| CGTTTACTAGCATCTTCGAT+TGG | - | chr4.3:33573451-33573470 | None:intergenic | 40.0% | |
| CTGAGAAATTCAGGAACCAT+TGG | - | chr4.3:33573507-33573526 | None:intergenic | 40.0% | |
| GCAAATTGCAACATACTAGG+AGG | - | chr4.3:33573357-33573376 | None:intergenic | 40.0% | |
| GTAGTTACCTGTGCATGTAA+AGG | + | chr4.3:33574010-33574029 | MS.gene50691:intron | 40.0% | |
| GTATGCTAAACTCTGTGTGA+TGG | + | chr4.3:33575170-33575189 | MS.gene50691:intron | 40.0% | |
| TCTGTGATCATGCTCTATAG+AGG | + | chr4.3:33575114-33575133 | MS.gene50691:intron | 40.0% | |
| TGTAAAGTCTTGCAGTACTG+TGG | + | chr4.3:33572853-33572872 | MS.gene50691:intron | 40.0% | |
| TGTATCTACTTCCGCAAATG+GGG | - | chr4.3:33575524-33575543 | None:intergenic | 40.0% | |
| ! | ATCCTTTAACGAAGAAGCAC+AGG | - | chr4.3:33574921-33574940 | None:intergenic | 40.0% |
| ! | CATCTGCTTCTGAGAAATTC+AGG | - | chr4.3:33573516-33573535 | None:intergenic | 40.0% |
| ! | TATACGGGAACGTAGCATTT+TGG | + | chr4.3:33572287-33572306 | MS.gene50691:CDS | 40.0% |
| ! | TTTAGGATCCCTCCATTACA+TGG | + | chr4.3:33574337-33574356 | MS.gene50691:intron | 40.0% |
| !! | ATTCAGGAACCATTGGCTTA+AGG | - | chr4.3:33573500-33573519 | None:intergenic | 40.0% |
| !! | TCGGATTTGCCCATTTTGAT+TGG | - | chr4.3:33571379-33571398 | None:intergenic | 40.0% |
| !! | TTCAGGAACCATTGGCTTAA+GGG | - | chr4.3:33573499-33573518 | None:intergenic | 40.0% |
| !!! | ACCTCCTTTTGAGTTATCAG+AGG | + | chr4.3:33572578-33572597 | MS.gene50691:CDS | 40.0% |
| !!! | CGGATTTGCCCATTTTGATT+GGG | - | chr4.3:33571378-33571397 | None:intergenic | 40.0% |
| !!! | GAGGTAAACACTTTTGGGTT+TGG | + | chr4.3:33572036-33572055 | MS.gene50691:intron | 40.0% |
| AAAAAGCTTCAGAGGGATCG+GGG | - | chr4.3:33573269-33573288 | None:intergenic | 45.0% | |
| AAGGAACTGCCTTCATCATC+TGG | - | chr4.3:33573198-33573217 | None:intergenic | 45.0% | |
| AGTCTTGGCATGTTCACAAC+TGG | - | chr4.3:33573312-33573331 | None:intergenic | 45.0% | |
| ATGAGCTTGAACCTACGCAT+TGG | - | chr4.3:33575671-33575690 | None:intergenic | 45.0% | |
| ATTGGGTGAGAAATAGGGGT+GGG | - | chr4.3:33571361-33571380 | None:intergenic | 45.0% | |
| CAAACGACTCACAAGTTCAC+AGG | - | chr4.3:33572666-33572685 | None:intergenic | 45.0% | |
| CAATTTGCCATAGTCACCTG+CGG | + | chr4.3:33573369-33573388 | MS.gene50691:intron | 45.0% | |
| CACAAAGAAGCCTGTTGTTG+TGG | + | chr4.3:33573221-33573240 | MS.gene50691:CDS | 45.0% | |
| CACAACAACAGGCTTCTTTG+TGG | - | chr4.3:33573223-33573242 | None:intergenic | 45.0% | |
| CACCTGTGCTTCTTCGTTAA+AGG | + | chr4.3:33574916-33574935 | MS.gene50691:intron | 45.0% | |
| CCTGCCTCTGATAACTCAAA+AGG | - | chr4.3:33572585-33572604 | None:intergenic | 45.0% | |
| GATCTCTTGCTTCAGTGTAG+AGG | + | chr4.3:33572744-33572763 | MS.gene50691:intron | 45.0% | |
| GCACTCCGAAAAAAAGGGTA+TGG | - | chr4.3:33571474-33571493 | None:intergenic | 45.0% | |
| GCCTCTGATAACTCAAAAGG+AGG | - | chr4.3:33572582-33572601 | None:intergenic | 45.0% | |
| GCTACGTTCCCGTATACTAT+TGG | - | chr4.3:33572283-33572302 | None:intergenic | 45.0% | |
| GTCTTGGCATGTTCACAACT+GGG | - | chr4.3:33573311-33573330 | None:intergenic | 45.0% | |
| TCGAAGATGCTAGTAAACGG+AGG | + | chr4.3:33573452-33573471 | MS.gene50691:CDS | 45.0% | |
| TGAGTTATCAGAGGCAGGAT+GGG | + | chr4.3:33572587-33572606 | MS.gene50691:CDS | 45.0% | |
| TGCTTATGTGTCCCCATTTG+CGG | + | chr4.3:33575510-33575529 | MS.gene50691:intron | 45.0% | |
| TGTGGAAAAATGAAAGCCGC+AGG | - | chr4.3:33573388-33573407 | None:intergenic | 45.0% | |
| TTGAGTTATCAGAGGCAGGA+TGG | + | chr4.3:33572586-33572605 | MS.gene50691:CDS | 45.0% | |
| ! | CATGTTGATTGCTCGAGTTG+TGG | + | chr4.3:33575227-33575246 | MS.gene50691:intron | 45.0% |
| ! | GGCAACACAGTTTTCTCACA+AGG | - | chr4.3:33575625-33575644 | None:intergenic | 45.0% |
| ! | TGTACTGACATGTGCATGAG+AGG | + | chr4.3:33574713-33574732 | MS.gene50691:intron | 45.0% |
| !!! | CCTTTTGAGTTATCAGAGGC+AGG | + | chr4.3:33572582-33572601 | MS.gene50691:CDS | 45.0% |
| !!! | TTTAAAATATATAATATTTG+TGG | + | chr4.3:33573590-33573609 | MS.gene50691:intron | 5.0% |
| AACATGCCAAGACTACCTGC+TGG | + | chr4.3:33573318-33573337 | MS.gene50691:CDS | 50.0% | |
| ACATGCCAAGACTACCTGCT+GGG | + | chr4.3:33573319-33573338 | MS.gene50691:CDS | 50.0% | |
| AGCAGATGAACTCTTGCAGC+TGG | + | chr4.3:33573528-33573547 | MS.gene50691:CDS | 50.0% | |
| AGGTGCATCCACAATCCTTG+TGG | - | chr4.3:33572562-33572581 | None:intergenic | 50.0% | |
| ATGAAAGCCGCAGGTGACTA+TGG | - | chr4.3:33573379-33573398 | None:intergenic | 50.0% | |
| CAACATACTAGGAGGAGGCA+AGG | - | chr4.3:33573349-33573368 | None:intergenic | 50.0% | |
| CACGCTTTACAATAACCCCC+AGG | - | chr4.3:33572506-33572525 | None:intergenic | 50.0% | |
| GAGTTATCAGAGGCAGGATG+GGG | + | chr4.3:33572588-33572607 | MS.gene50691:CDS | 50.0% | |
| GATCCCTCCATTACATGGTG+AGG | + | chr4.3:33574342-33574361 | MS.gene50691:intron | 50.0% | |
| GATGCTAGTAAACGGAGGAG+AGG | + | chr4.3:33573457-33573476 | MS.gene50691:CDS | 50.0% | |
| GATTGGGTGAGAAATAGGGG+TGG | - | chr4.3:33571362-33571381 | None:intergenic | 50.0% | |
| GCTTGTCGCAAACATCACTG+TGG | - | chr4.3:33572644-33572663 | None:intergenic | 50.0% | |
| GGTGCATCCACAATCCTTGT+GGG | - | chr4.3:33572561-33572580 | None:intergenic | 50.0% | |
| TCAGCCACCTCACCATGTAA+TGG | - | chr4.3:33574352-33574371 | None:intergenic | 50.0% | |
| ! | CCACCTCACCATGTAATGGA+GGG | - | chr4.3:33574348-33574367 | None:intergenic | 50.0% |
| ! | GCTCGAGTTGTGGTCCATTT+GGG | + | chr4.3:33575237-33575256 | MS.gene50691:intron | 50.0% |
| ! | GGTCTTGTGTCGACCCTTAT+TGG | + | chr4.3:33571974-33571993 | MS.gene50691:intron | 50.0% |
| ! | TGCTCGAGTTGTGGTCCATT+TGG | + | chr4.3:33575236-33575255 | MS.gene50691:intron | 50.0% |
| !!! | GGGAACGTAGCATTTTGGCT+TGG | + | chr4.3:33572292-33572311 | MS.gene50691:CDS | 50.0% |
| AATAACCCCCAGGTCCTCGT+TGG | - | chr4.3:33572496-33572515 | None:intergenic | 55.0% | |
| CCCTCCATTACATGGTGAGG+TGG | + | chr4.3:33574345-33574364 | MS.gene50691:intron | 55.0% | |
| GCCACCTCACCATGTAATGG+AGG | - | chr4.3:33574349-33574368 | None:intergenic | 55.0% | |
| GTAAGCCCAGCAGGTAGTCT+TGG | - | chr4.3:33573327-33573346 | None:intergenic | 55.0% | |
| ! | TGTTCGTGGAGCATCCAACG+AGG | + | chr4.3:33572479-33572498 | MS.gene50691:CDS | 55.0% |
| AGCATCCAACGAGGACCTGG+GGG | + | chr4.3:33572488-33572507 | MS.gene50691:CDS | 60.0% | |
| GAGCATCCAACGAGGACCTG+GGG | + | chr4.3:33572487-33572506 | MS.gene50691:CDS | 60.0% | |
| ! | GGAGCATCCAACGAGGACCT+GGG | + | chr4.3:33572486-33572505 | MS.gene50691:CDS | 60.0% |
| ! | TGGAGCATCCAACGAGGACC+TGG | + | chr4.3:33572485-33572504 | MS.gene50691:CDS | 60.0% |
| GGAGGCAAGGTAAGCCCAGC+AGG | - | chr4.3:33573336-33573355 | None:intergenic | 65.0% | |
| GCTGGCAGCAGCTCGTCAGC+AGG | + | chr4.3:33573546-33573565 | MS.gene50691:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 33571301 | 33575765 | 33571301 | ID=MS.gene50691 |
| chr4.3 | mRNA | 33571301 | 33575765 | 33571301 | ID=MS.gene50691.t1;Parent=MS.gene50691 |
| chr4.3 | exon | 33571301 | 33571414 | 33571301 | ID=MS.gene50691.t1.exon1;Parent=MS.gene50691.t1 |
| chr4.3 | CDS | 33571301 | 33571414 | 33571301 | ID=cds.MS.gene50691.t1;Parent=MS.gene50691.t1 |
| chr4.3 | exon | 33572241 | 33572329 | 33572241 | ID=MS.gene50691.t1.exon2;Parent=MS.gene50691.t1 |
| chr4.3 | CDS | 33572241 | 33572329 | 33572241 | ID=cds.MS.gene50691.t1;Parent=MS.gene50691.t1 |
| chr4.3 | exon | 33572452 | 33572673 | 33572452 | ID=MS.gene50691.t1.exon3;Parent=MS.gene50691.t1 |
| chr4.3 | CDS | 33572452 | 33572673 | 33572452 | ID=cds.MS.gene50691.t1;Parent=MS.gene50691.t1 |
| chr4.3 | exon | 33573173 | 33573360 | 33573173 | ID=MS.gene50691.t1.exon4;Parent=MS.gene50691.t1 |
| chr4.3 | CDS | 33573173 | 33573360 | 33573173 | ID=cds.MS.gene50691.t1;Parent=MS.gene50691.t1 |
| chr4.3 | exon | 33573446 | 33573567 | 33573446 | ID=MS.gene50691.t1.exon5;Parent=MS.gene50691.t1 |
| chr4.3 | CDS | 33573446 | 33573567 | 33573446 | ID=cds.MS.gene50691.t1;Parent=MS.gene50691.t1 |
| chr4.3 | exon | 33575679 | 33575765 | 33575679 | ID=MS.gene50691.t1.exon6;Parent=MS.gene50691.t1 |
| chr4.3 | CDS | 33575679 | 33575765 | 33575679 | ID=cds.MS.gene50691.t1;Parent=MS.gene50691.t1 |
| Gene Sequence |
| Protein sequence |
