Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51172.t1 | XP_027188200.1 | 47.2 | 305 | 146 | 3 | 34 | 337 | 26 | 316 | 5.60E-60 | 241.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51172.t1 | Q9FHE1 | 38.1 | 202 | 110 | 5 | 63 | 254 | 261 | 457 | 3.5e-26 | 120.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51172.t1 | A0A3Q7YDC8 | 47.2 | 305 | 146 | 3 | 34 | 337 | 26 | 316 | 4.1e-60 | 241.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene51172 | MS.gene029093 | PPI |
| MS.gene066439 | MS.gene51172 | PPI |
| MS.gene51172 | MS.gene90825 | PPI |
| MS.gene51172 | MS.gene97346 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51172.t1 | MTR_7g088160 | 43.465 | 329 | 147 | 3 | 34 | 337 | 75 | 389 | 1.67e-84 | 261 |
| MS.gene51172.t1 | MTR_4g063670 | 43.750 | 320 | 149 | 9 | 31 | 336 | 17 | 319 | 1.80e-63 | 204 |
| MS.gene51172.t1 | MTR_0867s0010 | 44.062 | 320 | 148 | 8 | 31 | 336 | 17 | 319 | 7.13e-60 | 195 |
| MS.gene51172.t1 | MTR_4g083510 | 39.763 | 337 | 169 | 10 | 16 | 336 | 2 | 320 | 9.00e-52 | 174 |
| MS.gene51172.t1 | MTR_7g107340 | 36.513 | 304 | 145 | 4 | 32 | 334 | 76 | 332 | 4.72e-51 | 172 |
| MS.gene51172.t1 | MTR_1g051185 | 47.682 | 151 | 69 | 4 | 93 | 241 | 45 | 187 | 4.52e-36 | 131 |
| MS.gene51172.t1 | MTR_3g069460 | 42.771 | 166 | 84 | 3 | 31 | 194 | 17 | 173 | 9.60e-36 | 128 |
| MS.gene51172.t1 | MTR_7g114170 | 32.013 | 303 | 130 | 9 | 32 | 334 | 61 | 287 | 2.17e-31 | 119 |
| MS.gene51172.t1 | MTR_6g081150 | 36.413 | 184 | 71 | 5 | 93 | 276 | 40 | 177 | 1.01e-24 | 99.0 |
| MS.gene51172.t1 | MTR_5g066280 | 24.503 | 302 | 200 | 5 | 36 | 335 | 55 | 330 | 4.28e-22 | 95.5 |
| MS.gene51172.t1 | MTR_4g026120 | 24.503 | 302 | 200 | 5 | 36 | 335 | 55 | 330 | 1.22e-21 | 94.4 |
| MS.gene51172.t1 | MTR_4g036435 | 24.503 | 302 | 200 | 5 | 36 | 335 | 55 | 330 | 1.22e-21 | 94.4 |
| MS.gene51172.t1 | MTR_3g067785 | 24.503 | 302 | 200 | 5 | 36 | 335 | 55 | 330 | 1.25e-21 | 94.4 |
| MS.gene51172.t1 | MTR_4g013220 | 24.503 | 302 | 200 | 5 | 36 | 335 | 55 | 330 | 1.40e-21 | 94.0 |
| MS.gene51172.t1 | MTR_1g106885 | 24.503 | 302 | 200 | 5 | 36 | 335 | 116 | 391 | 5.74e-21 | 93.2 |
| MS.gene51172.t1 | MTR_2g022120 | 24.503 | 302 | 200 | 5 | 36 | 335 | 119 | 394 | 6.00e-21 | 93.2 |
| MS.gene51172.t1 | MTR_5g077245 | 24.172 | 302 | 201 | 5 | 36 | 335 | 108 | 383 | 3.96e-20 | 90.5 |
| MS.gene51172.t1 | MTR_2g072860 | 28.659 | 164 | 112 | 2 | 34 | 197 | 29 | 187 | 5.72e-19 | 86.3 |
| MS.gene51172.t1 | MTR_7g461350 | 27.551 | 196 | 132 | 4 | 1 | 196 | 69 | 254 | 7.71e-19 | 86.7 |
| MS.gene51172.t1 | MTR_6g016670 | 27.551 | 196 | 132 | 4 | 1 | 196 | 69 | 254 | 7.71e-19 | 86.7 |
| MS.gene51172.t1 | MTR_3g464310 | 27.551 | 196 | 132 | 4 | 1 | 196 | 69 | 254 | 7.71e-19 | 86.7 |
| MS.gene51172.t1 | MTR_6g092533 | 27.329 | 161 | 114 | 1 | 36 | 196 | 119 | 276 | 1.00e-18 | 86.7 |
| MS.gene51172.t1 | MTR_3g464170 | 27.041 | 196 | 133 | 4 | 1 | 196 | 69 | 254 | 1.38e-18 | 85.9 |
| MS.gene51172.t1 | MTR_1g100375 | 27.041 | 196 | 133 | 4 | 1 | 196 | 69 | 254 | 1.38e-18 | 85.9 |
| MS.gene51172.t1 | MTR_6g051405 | 28.834 | 163 | 111 | 2 | 34 | 196 | 97 | 254 | 1.52e-18 | 85.9 |
| MS.gene51172.t1 | MTR_3g450670 | 28.221 | 163 | 112 | 2 | 34 | 196 | 93 | 250 | 4.15e-18 | 84.7 |
| MS.gene51172.t1 | MTR_1g471070 | 28.221 | 163 | 112 | 2 | 34 | 196 | 93 | 250 | 4.15e-18 | 84.7 |
| MS.gene51172.t1 | MTR_7g062380 | 23.977 | 171 | 112 | 1 | 75 | 245 | 26 | 178 | 7.12e-15 | 73.9 |
| MS.gene51172.t1 | MTR_6g453050 | 24.262 | 305 | 188 | 9 | 9 | 304 | 35 | 305 | 7.06e-14 | 71.6 |
| MS.gene51172.t1 | MTR_8g015740 | 37.931 | 116 | 56 | 3 | 2 | 105 | 19 | 130 | 1.94e-13 | 67.0 |
| MS.gene51172.t1 | MTR_8g015750 | 33.645 | 214 | 94 | 8 | 141 | 336 | 3 | 186 | 6.53e-13 | 67.0 |
| MS.gene51172.t1 | MTR_7g083520 | 23.125 | 160 | 120 | 1 | 38 | 197 | 31 | 187 | 8.57e-13 | 68.2 |
| MS.gene51172.t1 | MTR_4g046090 | 26.316 | 152 | 94 | 1 | 95 | 246 | 71 | 204 | 1.18e-12 | 67.4 |
| MS.gene51172.t1 | MTR_1g086750 | 27.966 | 118 | 85 | 0 | 75 | 192 | 26 | 143 | 1.58e-12 | 66.2 |
| MS.gene51172.t1 | MTR_4g046740 | 35.659 | 129 | 64 | 5 | 212 | 336 | 23 | 136 | 1.88e-12 | 64.3 |
| MS.gene51172.t1 | MTR_2g023560 | 63.636 | 44 | 16 | 0 | 74 | 117 | 62 | 105 | 3.67e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51172.t1 | AT5G41220 | 38.693 | 199 | 107 | 5 | 66 | 254 | 206 | 399 | 9.69e-33 | 127 |
| MS.gene51172.t1 | AT5G41220 | 38.693 | 199 | 107 | 5 | 66 | 254 | 214 | 407 | 1.11e-32 | 127 |
| MS.gene51172.t1 | AT5G41220 | 38.693 | 199 | 107 | 5 | 66 | 254 | 264 | 457 | 1.12e-32 | 128 |
| MS.gene51172.t1 | AT5G41240 | 37.438 | 203 | 111 | 5 | 66 | 257 | 264 | 461 | 1.23e-31 | 125 |
| MS.gene51172.t1 | AT3G47680 | 32.093 | 215 | 118 | 8 | 38 | 243 | 14 | 209 | 2.66e-23 | 98.2 |
| MS.gene51172.t1 | AT1G66235 | 25.907 | 193 | 122 | 5 | 75 | 252 | 7 | 193 | 6.47e-13 | 68.6 |
Find 56 sgRNAs with CRISPR-Local
Find 66 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGGATTCTTCAGTAAAT+TGG | 0.187266 | 7.3:+27481278 | None:intergenic |
| TAGAAATATTTAACCATGAT+TGG | 0.280172 | 7.3:+27481611 | None:intergenic |
| ATCATGGTTAAATATTTCTA+AGG | 0.308295 | 7.3:-27481608 | MS.gene51172:CDS |
| GTAAATTGGCACGACCATTT+AGG | 0.320469 | 7.3:+27481292 | None:intergenic |
| TACTAAAAGATGAACCTAAA+TGG | 0.349471 | 7.3:-27481306 | MS.gene51172:CDS |
| AGAACAAAGAATTCTGCTTC+AGG | 0.392497 | 7.3:-27481253 | MS.gene51172:CDS |
| AGAATTCTTTGTTCTCTTGT+TGG | 0.394331 | 7.3:+27481261 | None:intergenic |
| TGATCAAATGTGGGGATAGA+AGG | 0.401094 | 7.3:+27481847 | None:intergenic |
| GTTAGATCCACATGAACAAT+AGG | 0.411169 | 7.3:+27481091 | None:intergenic |
| TGAGCTTCACTATCTCTTGA+TGG | 0.426003 | 7.3:-27480954 | MS.gene51172:CDS |
| TCACCACTTGTAGGCGTGTC+CGG | 0.436446 | 7.3:+27481208 | None:intergenic |
| AGTAGAGTGGTTCGTCCGAT+TGG | 0.444657 | 7.3:-27481160 | MS.gene51172:CDS |
| ATCTCTTGATGGATACATCT+AGG | 0.458045 | 7.3:-27480943 | MS.gene51172:CDS |
| ATACACTTCTTATCCAATCA+TGG | 0.460631 | 7.3:-27481624 | MS.gene51172:CDS |
| TTTGAAGAAATCTGAGCTGT+TGG | 0.469253 | 7.3:+27481700 | None:intergenic |
| ATGGTCGAAGGTGAACTTGA+TGG | 0.477920 | 7.3:-27481470 | MS.gene51172:CDS |
| CTACACATCCTCTTCTAATC+CGG | 0.479246 | 7.3:-27481227 | MS.gene51172:CDS |
| ATTTCTAAGGATCCAATTGT+GGG | 0.492615 | 7.3:-27481595 | MS.gene51172:CDS |
| AGGAGAAAATATATAAAGAA+AGG | 0.495810 | 7.3:-27481663 | MS.gene51172:CDS |
| GTAGAGTGGTTCGTCCGATT+GGG | 0.497308 | 7.3:-27481159 | MS.gene51172:CDS |
| GAAGGTGAGGATTGAAACAT+AGG | 0.501482 | 7.3:+27481865 | None:intergenic |
| TCTATCCCCACATTTGATCA+AGG | 0.504348 | 7.3:-27481844 | MS.gene51172:CDS |
| TTGTTCATGTGGATCTAACT+AGG | 0.507003 | 7.3:-27481087 | MS.gene51172:CDS |
| GACAAAAGCAGCTAAAAGAA+AGG | 0.508350 | 7.3:-27481137 | MS.gene51172:CDS |
| TATTTCTAAGGATCCAATTG+TGG | 0.512026 | 7.3:-27481596 | MS.gene51172:CDS |
| TGAAGTTCCTTGATCAAATG+TGG | 0.515631 | 7.3:+27481837 | None:intergenic |
| CCAACTTGAGAGGAAAATGA+TGG | 0.520919 | 7.3:+27481757 | None:intergenic |
| GCATGAAGGTAACAAGTTGA+AGG | 0.526954 | 7.3:-27481008 | MS.gene51172:CDS |
| CGACATTATGCAAGATGCAT+TGG | 0.532468 | 7.3:-27481383 | MS.gene51172:CDS |
| ACAAAAGCAGCTAAAAGAAA+GGG | 0.543467 | 7.3:-27481136 | MS.gene51172:CDS |
| TGTCCGAGGTCACCACTTGT+AGG | 0.544239 | 7.3:+27481199 | None:intergenic |
| CACTTGAGTTGTATTGTCCG+AGG | 0.553422 | 7.3:+27481185 | None:intergenic |
| GCCTATTCAAGAAAGAAAAG+TGG | 0.554764 | 7.3:-27481418 | MS.gene51172:CDS |
| AGTTGGGTTAGATAATATTG+AGG | 0.557841 | 7.3:-27481740 | MS.gene51172:CDS |
| GAAGTTCCTTGATCAAATGT+GGG | 0.558018 | 7.3:+27481838 | None:intergenic |
| AAATGTGGGGATAGAAGGTG+AGG | 0.558798 | 7.3:+27481852 | None:intergenic |
| TGAATCAAATTAAATGTCGA+TGG | 0.569722 | 7.3:-27481489 | MS.gene51172:CDS |
| TCATGTGGATCTAACTAGGA+TGG | 0.578161 | 7.3:-27481083 | MS.gene51172:CDS |
| TGAAACACCTATTGTTCATG+TGG | 0.578577 | 7.3:-27481098 | MS.gene51172:CDS |
| AATTAAATGTCGATGGTCGA+AGG | 0.587022 | 7.3:-27481482 | MS.gene51172:CDS |
| CGGATTAGAAGAGGATGTGT+AGG | 0.590924 | 7.3:+27481228 | None:intergenic |
| ATTATCTAACCCAACTTGAG+AGG | 0.596041 | 7.3:+27481747 | None:intergenic |
| TTCTAAGGATCCAATTGTGG+GGG | 0.599880 | 7.3:-27481593 | MS.gene51172:CDS |
| ATTGCACGTGGTGTGCATGA+AGG | 0.607967 | 7.3:-27481022 | MS.gene51172:CDS |
| GATAATTATAATCAATATCG+TGG | 0.614936 | 7.3:-27481532 | MS.gene51172:CDS |
| ACGCCTACAAGTGGTGACCT+CGG | 0.622408 | 7.3:-27481202 | MS.gene51172:CDS |
| AATCCGGACACGCCTACAAG+TGG | 0.635438 | 7.3:-27481211 | MS.gene51172:CDS |
| AGGCGTGTCCGGATTAGAAG+AGG | 0.638071 | 7.3:+27481219 | None:intergenic |
| TTTCTAAGGATCCAATTGTG+GGG | 0.639337 | 7.3:-27481594 | MS.gene51172:CDS |
| AAGTTCCTTGATCAAATGTG+GGG | 0.640420 | 7.3:+27481839 | None:intergenic |
| CAACTCAAGTGAAAGTAGAG+TGG | 0.640911 | 7.3:-27481173 | MS.gene51172:CDS |
| ATATAAAGAAAGGTTTACCA+CGG | 0.691861 | 7.3:-27481653 | MS.gene51172:CDS |
| GCTTTAGAAGATATTGCACG+TGG | 0.699659 | 7.3:-27481034 | MS.gene51172:CDS |
| TAAAGAAAGGTTTACCACGG+AGG | 0.701400 | 7.3:-27481650 | MS.gene51172:CDS |
| GGATACATCTAGGATGACAG+AGG | 0.702928 | 7.3:-27480933 | MS.gene51172:CDS |
| AAGAAGTGTATCTTCCTCCG+TGG | 0.715732 | 7.3:+27481636 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGGAGAAAATATATAAAGAA+AGG | - | chr7.3:27481070-27481089 | MS.gene51172:CDS | 20.0% |
| !! | GATAATTATAATCAATATCG+TGG | - | chr7.3:27481201-27481220 | MS.gene51172:CDS | 20.0% |
| !! | TAGAAATATTTAACCATGAT+TGG | + | chr7.3:27481125-27481144 | None:intergenic | 20.0% |
| !! | TTCAAAAGAAACAAAAACAA+AGG | - | chr7.3:27481050-27481069 | MS.gene51172:CDS | 20.0% |
| !!! | ATCATGGTTAAATATTTCTA+AGG | - | chr7.3:27481125-27481144 | MS.gene51172:CDS | 20.0% |
| ! | ATATAAAGAAAGGTTTACCA+CGG | - | chr7.3:27481080-27481099 | MS.gene51172:CDS | 25.0% |
| ! | GGAAAAAGAATTGCAAATTA+AGG | - | chr7.3:27481746-27481765 | MS.gene51172:CDS | 25.0% |
| ! | TACTAAAAGATGAACCTAAA+TGG | - | chr7.3:27481427-27481446 | MS.gene51172:CDS | 25.0% |
| ! | TGAATCAAATTAAATGTCGA+TGG | - | chr7.3:27481244-27481263 | MS.gene51172:CDS | 25.0% |
| ACAAAAGCAGCTAAAAGAAA+GGG | - | chr7.3:27481597-27481616 | MS.gene51172:CDS | 30.0% | |
| AGAATTCTTTGTTCTCTTGT+TGG | + | chr7.3:27481475-27481494 | None:intergenic | 30.0% | |
| ATACACTTCTTATCCAATCA+TGG | - | chr7.3:27481109-27481128 | MS.gene51172:CDS | 30.0% | |
| TGTTGGATTCTTCAGTAAAT+TGG | + | chr7.3:27481458-27481477 | None:intergenic | 30.0% | |
| ! | AGTTGGGTTAGATAATATTG+AGG | - | chr7.3:27480993-27481012 | MS.gene51172:CDS | 30.0% |
| ! | ATTTCTAAGGATCCAATTGT+GGG | - | chr7.3:27481138-27481157 | MS.gene51172:CDS | 30.0% |
| ! | TATTTCTAAGGATCCAATTG+TGG | - | chr7.3:27481137-27481156 | MS.gene51172:CDS | 30.0% |
| ! | TCTTTTAGTAATTTCCATGC+TGG | + | chr7.3:27481417-27481436 | None:intergenic | 30.0% |
| !! | ACCACTTTTCTTTCTTGAAT+AGG | + | chr7.3:27481319-27481338 | None:intergenic | 30.0% |
| AAGTTCCTTGATCAAATGTG+GGG | + | chr7.3:27480897-27480916 | None:intergenic | 35.0% | |
| AATTAAATGTCGATGGTCGA+AGG | - | chr7.3:27481251-27481270 | MS.gene51172:CDS | 35.0% | |
| AGAACAAAGAATTCTGCTTC+AGG | - | chr7.3:27481480-27481499 | MS.gene51172:CDS | 35.0% | |
| ATTATCTAACCCAACTTGAG+AGG | + | chr7.3:27480989-27481008 | None:intergenic | 35.0% | |
| GAAGTTCCTTGATCAAATGT+GGG | + | chr7.3:27480898-27480917 | None:intergenic | 35.0% | |
| GACAAAAGCAGCTAAAAGAA+AGG | - | chr7.3:27481596-27481615 | MS.gene51172:CDS | 35.0% | |
| GCCTATTCAAGAAAGAAAAG+TGG | - | chr7.3:27481315-27481334 | MS.gene51172:CDS | 35.0% | |
| GTTAGATCCACATGAACAAT+AGG | + | chr7.3:27481645-27481664 | None:intergenic | 35.0% | |
| TGAAACACCTATTGTTCATG+TGG | - | chr7.3:27481635-27481654 | MS.gene51172:CDS | 35.0% | |
| TGAAGTTCCTTGATCAAATG+TGG | + | chr7.3:27480899-27480918 | None:intergenic | 35.0% | |
| TTGTTCATGTGGATCTAACT+AGG | - | chr7.3:27481646-27481665 | MS.gene51172:CDS | 35.0% | |
| TTTGAAGAAATCTGAGCTGT+TGG | + | chr7.3:27481036-27481055 | None:intergenic | 35.0% | |
| ! | ACCAAAGAGCAAGTTCTTTT+TGG | - | chr7.3:27481166-27481185 | MS.gene51172:CDS | 35.0% |
| ! | ATCTCTTGATGGATACATCT+AGG | - | chr7.3:27481790-27481809 | MS.gene51172:CDS | 35.0% |
| ! | CATCATTTTCCTCTCAAGTT+GGG | - | chr7.3:27480977-27480996 | MS.gene51172:CDS | 35.0% |
| ! | TCCAAAAAGAACTTGCTCTT+TGG | + | chr7.3:27481170-27481189 | None:intergenic | 35.0% |
| ! | TTTCTAAGGATCCAATTGTG+GGG | - | chr7.3:27481139-27481158 | MS.gene51172:CDS | 35.0% |
| CAACTCAAGTGAAAGTAGAG+TGG | - | chr7.3:27481560-27481579 | MS.gene51172:CDS | 40.0% | |
| CCAACTTGAGAGGAAAATGA+TGG | + | chr7.3:27480979-27480998 | None:intergenic | 40.0% | |
| CGACATTATGCAAGATGCAT+TGG | - | chr7.3:27481350-27481369 | MS.gene51172:CDS | 40.0% | |
| CTACACATCCTCTTCTAATC+CGG | - | chr7.3:27481506-27481525 | MS.gene51172:CDS | 40.0% | |
| GTAAATTGGCACGACCATTT+AGG | + | chr7.3:27481444-27481463 | None:intergenic | 40.0% | |
| TAAAGAAAGGTTTACCACGG+AGG | - | chr7.3:27481083-27481102 | MS.gene51172:CDS | 40.0% | |
| TCATGTGGATCTAACTAGGA+TGG | - | chr7.3:27481650-27481669 | MS.gene51172:CDS | 40.0% | |
| TCTATCCCCACATTTGATCA+AGG | - | chr7.3:27480889-27480908 | MS.gene51172:CDS | 40.0% | |
| TGAGCTTCACTATCTCTTGA+TGG | - | chr7.3:27481779-27481798 | MS.gene51172:CDS | 40.0% | |
| TGATCAAATGTGGGGATAGA+AGG | + | chr7.3:27480889-27480908 | None:intergenic | 40.0% | |
| ! | CCATCATTTTCCTCTCAAGT+TGG | - | chr7.3:27480976-27480995 | MS.gene51172:CDS | 40.0% |
| ! | GCATGAAGGTAACAAGTTGA+AGG | - | chr7.3:27481725-27481744 | MS.gene51172:CDS | 40.0% |
| ! | GTTTTATGTTAGTGCCAGCA+TGG | - | chr7.3:27481400-27481419 | MS.gene51172:CDS | 40.0% |
| ! | TTCTAAGGATCCAATTGTGG+GGG | - | chr7.3:27481140-27481159 | MS.gene51172:CDS | 40.0% |
| !! | GCTTTAGAAGATATTGCACG+TGG | - | chr7.3:27481699-27481718 | MS.gene51172:CDS | 40.0% |
| !!! | TTAGCTGCTTTTGTCCCAAT+CGG | + | chr7.3:27481591-27481610 | None:intergenic | 40.0% |
| AAATGTGGGGATAGAAGGTG+AGG | + | chr7.3:27480884-27480903 | None:intergenic | 45.0% | |
| ATGGTCGAAGGTGAACTTGA+TGG | - | chr7.3:27481263-27481282 | MS.gene51172:CDS | 45.0% | |
| ! | AAGAAGTGTATCTTCCTCCG+TGG | + | chr7.3:27481100-27481119 | None:intergenic | 45.0% |
| ! | CACTTGAGTTGTATTGTCCG+AGG | + | chr7.3:27481551-27481570 | None:intergenic | 45.0% |
| ! | CGGATTAGAAGAGGATGTGT+AGG | + | chr7.3:27481508-27481527 | None:intergenic | 45.0% |
| ! | GGATACATCTAGGATGACAG+AGG | - | chr7.3:27481800-27481819 | MS.gene51172:CDS | 45.0% |
| AGTAGAGTGGTTCGTCCGAT+TGG | - | chr7.3:27481573-27481592 | MS.gene51172:CDS | 50.0% | |
| ATTGCACGTGGTGTGCATGA+AGG | - | chr7.3:27481711-27481730 | MS.gene51172:CDS | 50.0% | |
| GTAGAGTGGTTCGTCCGATT+GGG | - | chr7.3:27481574-27481593 | MS.gene51172:CDS | 50.0% | |
| !! | CTTTGGTTTGCCCCCACAAT+TGG | + | chr7.3:27481153-27481172 | None:intergenic | 50.0% |
| AATCCGGACACGCCTACAAG+TGG | - | chr7.3:27481522-27481541 | MS.gene51172:CDS | 55.0% | |
| ACGCCTACAAGTGGTGACCT+CGG | - | chr7.3:27481531-27481550 | MS.gene51172:CDS | 55.0% | |
| TCACCACTTGTAGGCGTGTC+CGG | + | chr7.3:27481528-27481547 | None:intergenic | 55.0% | |
| TGTCCGAGGTCACCACTTGT+AGG | + | chr7.3:27481537-27481556 | None:intergenic | 55.0% | |
| ! | AGGCGTGTCCGGATTAGAAG+AGG | + | chr7.3:27481517-27481536 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 27480871 | 27481884 | 27480871 | ID=MS.gene51172 |
| chr7.3 | mRNA | 27480871 | 27481884 | 27480871 | ID=MS.gene51172.t1;Parent=MS.gene51172 |
| chr7.3 | exon | 27480871 | 27481884 | 27480871 | ID=MS.gene51172.t1.exon1;Parent=MS.gene51172.t1 |
| chr7.3 | CDS | 27480871 | 27481884 | 27480871 | ID=cds.MS.gene51172.t1;Parent=MS.gene51172.t1 |
| Gene Sequence |
| Protein sequence |
