Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51326.t1 | RHN74695.1 | 37.2 | 156 | 87 | 2 | 12 | 156 | 50 | 205 | 2.10E-15 | 92.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51326.t1 | A0A396JE31 | 37.2 | 156 | 87 | 2 | 12 | 156 | 50 | 205 | 1.5e-15 | 92.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050026 | MS.gene51326 | 0.800072 | 1.71E-48 | -1.69E-46 |
| MS.gene050442 | MS.gene51326 | 0.800315 | 1.53E-48 | -1.69E-46 |
| MS.gene050750 | MS.gene51326 | 0.815563 | 8.67E-52 | -1.69E-46 |
| MS.gene050953 | MS.gene51326 | 0.81566 | 8.25E-52 | -1.69E-46 |
| MS.gene052333 | MS.gene51326 | 0.805241 | 1.47E-49 | -1.69E-46 |
| MS.gene053166 | MS.gene51326 | 0.80972 | 1.65E-50 | -1.69E-46 |
| MS.gene05414 | MS.gene51326 | 0.815612 | 8.46E-52 | -1.69E-46 |
| MS.gene05415 | MS.gene51326 | 0.819796 | 9.62E-53 | -1.69E-46 |
| MS.gene054405 | MS.gene51326 | 0.807396 | 5.16E-50 | -1.69E-46 |
| MS.gene054559 | MS.gene51326 | 0.800173 | 1.63E-48 | -1.69E-46 |
| MS.gene055875 | MS.gene51326 | 0.804461 | 2.14E-49 | -1.69E-46 |
| MS.gene056873 | MS.gene51326 | 0.823303 | 1.49E-53 | -1.69E-46 |
| MS.gene058979 | MS.gene51326 | 0.815826 | 7.58E-52 | -1.69E-46 |
| MS.gene060011 | MS.gene51326 | 0.802555 | 5.31E-49 | -1.69E-46 |
| MS.gene060167 | MS.gene51326 | 0.817162 | 3.80E-52 | -1.69E-46 |
| MS.gene060520 | MS.gene51326 | 0.803139 | 4.02E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51326.t1 | MTR_6g037490 | 46.809 | 94 | 35 | 2 | 68 | 148 | 12 | 103 | 3.45e-18 | 77.0 |
| MS.gene51326.t1 | MTR_6g037500 | 45.455 | 99 | 50 | 1 | 15 | 113 | 17 | 111 | 5.19e-18 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 40 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAGTCATTATTAGAATTT+TGG | 0.159248 | 4.1:+50720263 | None:intergenic |
| TTTCTTTCTGTTACATTATA+AGG | 0.178993 | 4.1:+50720190 | None:intergenic |
| GTAGGTTCACTTACATTATC+TGG | 0.196646 | 4.1:+50720328 | None:intergenic |
| TGTTTATGTCGCATAGTTCT+AGG | 0.266844 | 4.1:-50720375 | MS.gene51326:CDS |
| AATGTAACAGAAAGAAAGTT+TGG | 0.272986 | 4.1:-50720184 | MS.gene51326:CDS |
| ACTGGTTTCCTATGAGCTAT+TGG | 0.291431 | 4.1:+50719983 | None:intergenic |
| GATGCAGGTCATACAACTTC+AGG | 0.319360 | 4.1:-50717250 | MS.gene51326:intron |
| AAATTCTAATAATGACTCTT+TGG | 0.322677 | 4.1:-50720260 | MS.gene51326:CDS |
| ATCAATTCTTGATTATCTTT+AGG | 0.323616 | 4.1:+50720235 | None:intergenic |
| TGCTTGGTGCAAGCTCTAAC+TGG | 0.323911 | 4.1:+50719965 | None:intergenic |
| TTGGAGAAGTTGAGGGAACT+TGG | 0.361024 | 4.1:-50720165 | MS.gene51326:CDS |
| AGTGAGGATGTCATAGAATC+AGG | 0.378238 | 4.1:-50720295 | MS.gene51326:CDS |
| AGAATAGGATCAAGAAAATC+AGG | 0.397494 | 4.1:+50720013 | None:intergenic |
| TGTTTCTACTTTCCTTGTGC+AGG | 0.434272 | 4.1:-50717211 | MS.gene51326:intron |
| AAGAAAGTTTGGAGAAGTTG+AGG | 0.450688 | 4.1:-50720173 | MS.gene51326:CDS |
| TTGATGTTCCAATAGCTCAT+AGG | 0.450976 | 4.1:-50719991 | MS.gene51326:CDS |
| AGAAAGTTTGGAGAAGTTGA+GGG | 0.474553 | 4.1:-50720172 | MS.gene51326:CDS |
| TAGGTTCACTTACATTATCT+GGG | 0.480455 | 4.1:+50720329 | None:intergenic |
| GCTATTGGAACATCAAGAAT+AGG | 0.485726 | 4.1:+50719998 | None:intergenic |
| TGAAAGAAAGAATCATGATA+AGG | 0.493654 | 4.1:-50720128 | MS.gene51326:CDS |
| GAACCTAGACATGGGGTGCT+TGG | 0.505111 | 4.1:+50719949 | None:intergenic |
| TTTGTAGGTTGATTCTCCCT+CGG | 0.510406 | 4.1:+50720064 | None:intergenic |
| GAAGTTGAGGGAACTTGGAA+AGG | 0.531057 | 4.1:-50720160 | MS.gene51326:CDS |
| ATGCAGGTCATACAACTTCA+GGG | 0.540716 | 4.1:-50717249 | MS.gene51326:intron |
| GCACCAAGCACCCCATGTCT+AGG | 0.541177 | 4.1:-50719952 | MS.gene51326:intron |
| GTGAGGATGTCATAGAATCA+GGG | 0.556996 | 4.1:-50720294 | MS.gene51326:CDS |
| ATGACATCCTCACTCATGAA+AGG | 0.594023 | 4.1:+50720304 | None:intergenic |
| CAGTCATGAATCTGAACCGA+GGG | 0.610235 | 4.1:-50720080 | MS.gene51326:CDS |
| TACAACTTCAGGGAGATCAA+AGG | 0.622019 | 4.1:-50717239 | MS.gene51326:CDS |
| ACCTACTCCTTTCATGAGTG+AGG | 0.623479 | 4.1:-50720311 | MS.gene51326:CDS |
| TCCTCACTCATGAAAGGAGT+AGG | 0.628989 | 4.1:+50720310 | None:intergenic |
| ATATGATACGAACCTAGACA+TGG | 0.635717 | 4.1:+50719940 | None:intergenic |
| TGAGGATGTCATAGAATCAG+GGG | 0.647335 | 4.1:-50720293 | MS.gene51326:CDS |
| TATGATACGAACCTAGACAT+GGG | 0.650684 | 4.1:+50719941 | None:intergenic |
| AGGTTCACTTACATTATCTG+GGG | 0.654218 | 4.1:+50720330 | None:intergenic |
| ACATAATGCTTACCTGCACA+AGG | 0.656177 | 4.1:+50717199 | None:intergenic |
| ACATTATAAGGATGTTCATG+TGG | 0.660432 | 4.1:+50720202 | None:intergenic |
| TCAGATTCATGACTGTGCTG+AGG | 0.673978 | 4.1:+50720088 | None:intergenic |
| ACAGTCATGAATCTGAACCG+AGG | 0.697349 | 4.1:-50720081 | MS.gene51326:CDS |
| ATGATACGAACCTAGACATG+GGG | 0.704800 | 4.1:+50719942 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTTTTTATTGAACAAA+TGG | - | chr4.1:50720027-50720046 | MS.gene51326:CDS | 10.0% |
| !! | AAATTGAAAAAATCTCTTTA+TGG | - | chr4.1:50718049-50718068 | MS.gene51326:intron | 15.0% |
| !! | TTCTTATTAGTTAATGATTA+TGG | + | chr4.1:50719405-50719424 | None:intergenic | 15.0% |
| !! | AAATTCTAATAATGACTCTT+TGG | - | chr4.1:50717229-50717248 | MS.gene51326:CDS | 20.0% |
| !! | AACAAAAACATAGTAATTTG+AGG | + | chr4.1:50719482-50719501 | None:intergenic | 20.0% |
| !! | ATCAATTCTTGATTATCTTT+AGG | + | chr4.1:50717257-50717276 | None:intergenic | 20.0% |
| !! | GTAAAAAATGCATTTCTTAA+TGG | - | chr4.1:50717956-50717975 | MS.gene51326:intron | 20.0% |
| !! | TCACTTTATAAAAGAGAAAT+TGG | - | chr4.1:50719002-50719021 | MS.gene51326:intron | 20.0% |
| !! | TTGTCACAATATAATTTCAA+TGG | + | chr4.1:50718913-50718932 | None:intergenic | 20.0% |
| !! | TTTCTTTCTGTTACATTATA+AGG | + | chr4.1:50717302-50717321 | None:intergenic | 20.0% |
| !!! | AAGAGTCATTATTAGAATTT+TGG | + | chr4.1:50717229-50717248 | None:intergenic | 20.0% |
| !!! | ATAATTTTTTGTGTTCTTCT+TGG | + | chr4.1:50719458-50719477 | None:intergenic | 20.0% |
| !!! | GTGTTTTTTGCTTATAAATT+GGG | - | chr4.1:50719522-50719541 | MS.gene51326:intron | 20.0% |
| !!! | TGTGTTTTTTGCTTATAAAT+TGG | - | chr4.1:50719521-50719540 | MS.gene51326:intron | 20.0% |
| ! | AACAAATTGAATGCAAGAAT+AGG | + | chr4.1:50719366-50719385 | None:intergenic | 25.0% |
| ! | AAGAATAATAATCAGAGCAT+TGG | + | chr4.1:50720106-50720125 | None:intergenic | 25.0% |
| ! | AATGTAACAGAAAGAAAGTT+TGG | - | chr4.1:50717305-50717324 | MS.gene51326:intron | 25.0% |
| ! | ACAAAAACAAACAAAGGTAA+AGG | - | chr4.1:50717443-50717462 | MS.gene51326:intron | 25.0% |
| ! | ACGAAACATCAATTAAATCA+CGG | + | chr4.1:50720167-50720186 | None:intergenic | 25.0% |
| ! | ATAAAAGAGAAATTGGATTC+TGG | - | chr4.1:50719009-50719028 | MS.gene51326:intron | 25.0% |
| ! | ATTATGAGCTATACTTATTG+CGG | + | chr4.1:50718941-50718960 | None:intergenic | 25.0% |
| ! | CCATTTCATTAAAGAACATT+AGG | + | chr4.1:50720333-50720352 | None:intergenic | 25.0% |
| ! | CCTAATGTTCTTTAATGAAA+TGG | - | chr4.1:50720330-50720349 | MS.gene51326:CDS | 25.0% |
| ! | GAAATTATATTGTGACAACA+AGG | - | chr4.1:50718915-50718934 | MS.gene51326:intron | 25.0% |
| ! | TAGATCAAAGAAAGGAATAT+CGG | - | chr4.1:50718336-50718355 | MS.gene51326:intron | 25.0% |
| ! | TGAAAGAAAGAATCATGATA+AGG | - | chr4.1:50717361-50717380 | MS.gene51326:intron | 25.0% |
| ! | TTAATCTAAGGAGTGATATA+AGG | + | chr4.1:50719231-50719250 | None:intergenic | 25.0% |
| ! | TTATATCACTCCTTAGATTA+AGG | - | chr4.1:50719230-50719249 | MS.gene51326:intron | 25.0% |
| ! | TTTACATCTAATTGATGTAG+AGG | + | chr4.1:50717941-50717960 | None:intergenic | 25.0% |
| !! | AATTTGAAACTTTGGGAAAA+AGG | - | chr4.1:50718442-50718461 | MS.gene51326:intron | 25.0% |
| !! | ATTTGAAACTTTGGGAAAAA+GGG | - | chr4.1:50718443-50718462 | MS.gene51326:intron | 25.0% |
| !! | TTTTCCCAAAGTTTCAAATT+TGG | + | chr4.1:50718442-50718461 | None:intergenic | 25.0% |
| !! | TTTTTGCTTATAAATTGGGA+CGG | - | chr4.1:50719526-50719545 | MS.gene51326:intron | 25.0% |
| !!! | TATTTTTACTGATGCTGATT+GGG | - | chr4.1:50718687-50718706 | MS.gene51326:intron | 25.0% |
| !!! | TTACCTTTGTTTGTTTTTGT+AGG | + | chr4.1:50717443-50717462 | None:intergenic | 25.0% |
| !!! | TTTTCTATGCTATTTGTAAC+AGG | - | chr4.1:50720364-50720383 | MS.gene51326:CDS | 25.0% |
| AAATTGACTGACAACACTAA+CGG | + | chr4.1:50718554-50718573 | None:intergenic | 30.0% | |
| AAGTTTCAAATTTGGATCCA+TGG | + | chr4.1:50718434-50718453 | None:intergenic | 30.0% | |
| AATAGCCACATTTCTATCAT+TGG | + | chr4.1:50718671-50718690 | None:intergenic | 30.0% | |
| AATGTTATGACTTTACCGAT+TGG | - | chr4.1:50717719-50717738 | MS.gene51326:intron | 30.0% | |
| AATTGAATGCAAGAATAGGA+AGG | + | chr4.1:50719362-50719381 | None:intergenic | 30.0% | |
| ACATTAGGCACATTATAATC+AGG | + | chr4.1:50720318-50720337 | None:intergenic | 30.0% | |
| ACATTATAAGGATGTTCATG+TGG | + | chr4.1:50717290-50717309 | None:intergenic | 30.0% | |
| ACTCAATCAGTAAAGAAACA+AGG | - | chr4.1:50718109-50718128 | MS.gene51326:intron | 30.0% | |
| ACTTCAAATTAATCGCATCA+CGG | + | chr4.1:50719796-50719815 | None:intergenic | 30.0% | |
| AGAAATTCCAAAGAATGTAC+AGG | - | chr4.1:50717622-50717641 | MS.gene51326:intron | 30.0% | |
| AGAATAGGATCAAGAAAATC+AGG | + | chr4.1:50717479-50717498 | None:intergenic | 30.0% | |
| AGTTTCAAATTTGGATCCAT+GGG | + | chr4.1:50718433-50718452 | None:intergenic | 30.0% | |
| ATATCTCAGAATTCTGTAGA+CGG | + | chr4.1:50718608-50718627 | None:intergenic | 30.0% | |
| ATGCTTATTACTGATGAAGA+TGG | - | chr4.1:50719633-50719652 | MS.gene51326:intron | 30.0% | |
| CAAAACCAATGATAGAAATG+TGG | - | chr4.1:50718663-50718682 | MS.gene51326:intron | 30.0% | |
| CAAATTTGTAAAATCACGTC+TGG | - | chr4.1:50719971-50719990 | MS.gene51326:CDS | 30.0% | |
| CAACCTACAAAAACAAACAA+AGG | - | chr4.1:50717437-50717456 | MS.gene51326:intron | 30.0% | |
| CTAATCAACTCCTTAATCTA+AGG | + | chr4.1:50719243-50719262 | None:intergenic | 30.0% | |
| CTCTTGAAAAGAATAACACT+TGG | - | chr4.1:50717696-50717715 | MS.gene51326:intron | 30.0% | |
| GAAATAGCTAGATCAAAGAA+AGG | - | chr4.1:50718328-50718347 | MS.gene51326:intron | 30.0% | |
| GTTGTATTCTCTCCTATAAA+AGG | - | chr4.1:50719262-50719281 | MS.gene51326:intron | 30.0% | |
| TAGGTTCACTTACATTATCT+GGG | + | chr4.1:50717163-50717182 | None:intergenic | 30.0% | |
| TGAAGAAAAATTTGGGTCAA+AGG | - | chr4.1:50718021-50718040 | MS.gene51326:intron | 30.0% | |
| TTATTTCCTTTCTCAGCATA+TGG | - | chr4.1:50720128-50720147 | MS.gene51326:CDS | 30.0% | |
| TTCTCTATATACGACATTAG+AGG | + | chr4.1:50719676-50719695 | None:intergenic | 30.0% | |
| ! | AGAGTTTGAAATCAAAGACT+TGG | - | chr4.1:50718279-50718298 | MS.gene51326:intron | 30.0% |
| ! | AGTTGGGAAATTGATTTACT+TGG | - | chr4.1:50718501-50718520 | MS.gene51326:intron | 30.0% |
| ! | ATTAAGGTGTTCTTCATAAG+GGG | + | chr4.1:50718584-50718603 | None:intergenic | 30.0% |
| ! | CATTAAGGTGTTCTTCATAA+GGG | + | chr4.1:50718585-50718604 | None:intergenic | 30.0% |
| ! | GAGTTTGAAATCAAAGACTT+GGG | - | chr4.1:50718280-50718299 | MS.gene51326:intron | 30.0% |
| ! | GCATTTTCTTTAGGTACAAA+TGG | + | chr4.1:50717140-50717159 | None:intergenic | 30.0% |
| ! | GGATCCAAATTTGAAACTTT+GGG | - | chr4.1:50718435-50718454 | MS.gene51326:intron | 30.0% |
| ! | TGAAAACATGCTCCTTTTAT+AGG | + | chr4.1:50719277-50719296 | None:intergenic | 30.0% |
| ! | TGGATCCAAATTTGAAACTT+TGG | - | chr4.1:50718434-50718453 | MS.gene51326:intron | 30.0% |
| ! | TTTGAAACTTTGGGAAAAAG+GGG | - | chr4.1:50718444-50718463 | MS.gene51326:intron | 30.0% |
| !! | CAGAATTCTGAGATATTTGA+AGG | - | chr4.1:50718612-50718631 | MS.gene51326:intron | 30.0% |
| !! | CAGGCTTTGAAGAAAAATTT+GGG | - | chr4.1:50718014-50718033 | MS.gene51326:intron | 30.0% |
| !! | GTTGATGATATAGTTCTTAC+CGG | - | chr4.1:50718211-50718230 | MS.gene51326:intron | 30.0% |
| !! | TCTAAAGTATTTTCTTGGCA+TGG | - | chr4.1:50718306-50718325 | MS.gene51326:intron | 30.0% |
| !! | TGTCAATTTTGTATTGATGC+AGG | - | chr4.1:50720224-50720243 | MS.gene51326:CDS | 30.0% |
| !!! | CTATTTTTACTGATGCTGAT+TGG | - | chr4.1:50718686-50718705 | MS.gene51326:intron | 30.0% |
| !!! | GGATCTCTAAAGTATTTTCT+TGG | - | chr4.1:50718301-50718320 | MS.gene51326:intron | 30.0% |
| AAAACCAACAAATAGTGTCG+TGG | + | chr4.1:50720061-50720080 | None:intergenic | 35.0% | |
| AAAGGGTTTACTCAGACATA+TGG | - | chr4.1:50717830-50717849 | MS.gene51326:intron | 35.0% | |
| AAGAAACAAGGATACACTCA+AGG | - | chr4.1:50718121-50718140 | MS.gene51326:intron | 35.0% | |
| AAGAAAGTTTGGAGAAGTTG+AGG | - | chr4.1:50717316-50717335 | MS.gene51326:intron | 35.0% | |
| AAGAGATAAGAGGATCCTAA+TGG | + | chr4.1:50717900-50717919 | None:intergenic | 35.0% | |
| AATTGACTGACAACACTAAC+GGG | + | chr4.1:50718553-50718572 | None:intergenic | 35.0% | |
| ACCGTAAAATACAACTCTGA+CGG | - | chr4.1:50717773-50717792 | MS.gene51326:intron | 35.0% | |
| AGAAACAAGGATACACTCAA+GGG | - | chr4.1:50718122-50718141 | MS.gene51326:intron | 35.0% | |
| AGAAAGATATAAGGCAAGGT+TGG | - | chr4.1:50717802-50717821 | MS.gene51326:intron | 35.0% | |
| AGAAAGTTTGGAGAAGTTGA+GGG | - | chr4.1:50717317-50717336 | MS.gene51326:intron | 35.0% | |
| AGAATAGGAAGGCAATGTAT+TGG | + | chr4.1:50719351-50719370 | None:intergenic | 35.0% | |
| AGAGGTAAATGCAGAAAAAG+AGG | + | chr4.1:50717588-50717607 | None:intergenic | 35.0% | |
| AGGTTATTGTACCTATGTGT+GGG | - | chr4.1:50718741-50718760 | MS.gene51326:intron | 35.0% | |
| AGGTTCACTTACATTATCTG+GGG | + | chr4.1:50717162-50717181 | None:intergenic | 35.0% | |
| ATATCTATGCACCAACTTGA+GGG | - | chr4.1:50719142-50719161 | MS.gene51326:intron | 35.0% | |
| ATATGATACGAACCTAGACA+TGG | + | chr4.1:50717552-50717571 | None:intergenic | 35.0% | |
| CAGTAGAAAGATATAAGGCA+AGG | - | chr4.1:50717798-50717817 | MS.gene51326:intron | 35.0% | |
| CGGTTCAGTAGAAAGATATA+AGG | - | chr4.1:50717793-50717812 | MS.gene51326:intron | 35.0% | |
| CTTGATCTCTTACAAGAAAC+AGG | - | chr4.1:50718379-50718398 | MS.gene51326:intron | 35.0% | |
| GCTATTGGAACATCAAGAAT+AGG | + | chr4.1:50717494-50717513 | None:intergenic | 35.0% | |
| GTAGGTTCACTTACATTATC+TGG | + | chr4.1:50717164-50717183 | None:intergenic | 35.0% | |
| TATGATACGAACCTAGACAT+GGG | + | chr4.1:50717551-50717570 | None:intergenic | 35.0% | |
| TCAATTTCCCAACTAACCTT+TGG | + | chr4.1:50718495-50718514 | None:intergenic | 35.0% | |
| TCTAAATGTTCCAAAGTGGA+AGG | - | chr4.1:50717649-50717668 | MS.gene51326:intron | 35.0% | |
| TGTTTATGTCGCATAGTTCT+AGG | - | chr4.1:50717114-50717133 | MS.gene51326:intron | 35.0% | |
| TTACAAGAAACAGGTATGAG+TGG | - | chr4.1:50718388-50718407 | MS.gene51326:intron | 35.0% | |
| TTATTCGTAAAGTACACTCC+TGG | - | chr4.1:50718160-50718179 | MS.gene51326:intron | 35.0% | |
| TTCTATACGAGACAAATGAG+AGG | + | chr4.1:50717606-50717625 | None:intergenic | 35.0% | |
| TTGATGTTCCAATAGCTCAT+AGG | - | chr4.1:50717498-50717517 | MS.gene51326:intron | 35.0% | |
| TTGCAAAGTTGAACACCATT+AGG | - | chr4.1:50717882-50717901 | MS.gene51326:intron | 35.0% | |
| TTTGTTCGATCATGTTGAAC+TGG | + | chr4.1:50718964-50718983 | None:intergenic | 35.0% | |
| ! | AACTTTTCAAACCAAGCTCT+TGG | + | chr4.1:50718088-50718107 | None:intergenic | 35.0% |
| ! | AATTTTTCTTCAAAGCCTGG+AGG | + | chr4.1:50718013-50718032 | None:intergenic | 35.0% |
| ! | ACCGTCAGAGTTGTATTTTA+CGG | + | chr4.1:50717777-50717796 | None:intergenic | 35.0% |
| ! | AGAATAGTAATTTTCCCACC+AGG | + | chr4.1:50718181-50718200 | None:intergenic | 35.0% |
| ! | AGTCGACTTTCTATCTGTAA+TGG | + | chr4.1:50718719-50718738 | None:intergenic | 35.0% |
| ! | CCAAATTTTTCTTCAAAGCC+TGG | + | chr4.1:50718016-50718035 | None:intergenic | 35.0% |
| ! | CGAGAGTTACTTTCAGAAAT+GGG | - | chr4.1:50719604-50719623 | MS.gene51326:intron | 35.0% |
| ! | GAAGATACCAAAGGTTAGTT+GGG | - | chr4.1:50718485-50718504 | MS.gene51326:intron | 35.0% |
| ! | GCATTAAGGTGTTCTTCATA+AGG | + | chr4.1:50718586-50718605 | None:intergenic | 35.0% |
| ! | TCGAGAGTTACTTTCAGAAA+TGG | - | chr4.1:50719603-50719622 | MS.gene51326:intron | 35.0% |
| ! | TCTAGAAGAAGAAGTGTACA+TGG | - | chr4.1:50717982-50718001 | MS.gene51326:intron | 35.0% |
| ! | TCTATGCTATTTGTAACAGG+CGG | - | chr4.1:50720367-50720386 | MS.gene51326:CDS | 35.0% |
| ! | TTGGATTCATCGAGTTCTAA+AGG | - | chr4.1:50718864-50718883 | MS.gene51326:intron | 35.0% |
| !! | AAGCTCTAAATGTTCCAAAG+TGG | - | chr4.1:50717645-50717664 | MS.gene51326:intron | 35.0% |
| !! | CCAGGCTTTGAAGAAAAATT+TGG | - | chr4.1:50718013-50718032 | MS.gene51326:intron | 35.0% |
| !! | TTATCTGGGGCATTTTCTTT+AGG | + | chr4.1:50717149-50717168 | None:intergenic | 35.0% |
| !!! | CATTGGTTTTGCCAAAGAAT+AGG | + | chr4.1:50718654-50718673 | None:intergenic | 35.0% |
| AAAGACCCTCACAAATTCCT+TGG | + | chr4.1:50718846-50718865 | None:intergenic | 40.0% | |
| AAAGCCACGACACTATTTGT+TGG | - | chr4.1:50720054-50720073 | MS.gene51326:CDS | 40.0% | |
| AAGACCCTCACAAATTCCTT+GGG | + | chr4.1:50718845-50718864 | None:intergenic | 40.0% | |
| AAGGAATTTGTGAGGGTCTT+TGG | - | chr4.1:50718845-50718864 | MS.gene51326:intron | 40.0% | |
| AATTCGCAGCAAGAGATAAG+AGG | + | chr4.1:50717910-50717929 | None:intergenic | 40.0% | |
| ACATAATGCTTACCTGCACA+AGG | + | chr4.1:50720293-50720312 | None:intergenic | 40.0% | |
| ACCGATTGGAAAGAAAACTG+TGG | - | chr4.1:50717733-50717752 | MS.gene51326:intron | 40.0% | |
| ACTTGGAGAAGTAAGAAGCA+AGG | - | chr4.1:50718775-50718794 | MS.gene51326:intron | 40.0% | |
| AGAGCTTCCTGTACATTCTT+TGG | + | chr4.1:50717632-50717651 | None:intergenic | 40.0% | |
| AGAGGCTGAGTTTAGATCAA+TGG | - | chr4.1:50718819-50718838 | MS.gene51326:intron | 40.0% | |
| AGTGAGGATGTCATAGAATC+AGG | - | chr4.1:50717194-50717213 | MS.gene51326:intron | 40.0% | |
| ATGACATCCTCACTCATGAA+AGG | + | chr4.1:50717188-50717207 | None:intergenic | 40.0% | |
| ATGATACGAACCTAGACATG+GGG | + | chr4.1:50717550-50717569 | None:intergenic | 40.0% | |
| ATGCAGGTCATACAACTTCA+GGG | - | chr4.1:50720240-50720259 | MS.gene51326:CDS | 40.0% | |
| ATGGTGTTCAACTTTGCAAC+AGG | + | chr4.1:50717881-50717900 | None:intergenic | 40.0% | |
| ATTGACTGACAACACTAACG+GGG | + | chr4.1:50718552-50718571 | None:intergenic | 40.0% | |
| CAGGTTATTGTACCTATGTG+TGG | - | chr4.1:50718740-50718759 | MS.gene51326:intron | 40.0% | |
| CATTTCTGTCACATCATCTC+CGG | + | chr4.1:50718233-50718252 | None:intergenic | 40.0% | |
| CCGATTGGAAAGAAAACTGT+GGG | - | chr4.1:50717734-50717753 | MS.gene51326:intron | 40.0% | |
| CTTATCTCTTGCTGCGAATT+TGG | - | chr4.1:50717910-50717929 | MS.gene51326:intron | 40.0% | |
| GAAACAAGGATACACTCAAG+GGG | - | chr4.1:50718123-50718142 | MS.gene51326:intron | 40.0% | |
| GAAAGTCCATATGCTGAGAA+AGG | + | chr4.1:50720137-50720156 | None:intergenic | 40.0% | |
| GAATTCTGTAGACGGCATTA+AGG | + | chr4.1:50718600-50718619 | None:intergenic | 40.0% | |
| GAGCATCTCATAAGCAAGTT+GGG | - | chr4.1:50719111-50719130 | MS.gene51326:intron | 40.0% | |
| GATATCTATGCACCAACTTG+AGG | - | chr4.1:50719141-50719160 | MS.gene51326:intron | 40.0% | |
| GGAAGATACCAAAGGTTAGT+TGG | - | chr4.1:50718484-50718503 | MS.gene51326:intron | 40.0% | |
| GGTAAATGCAGAAAAAGAGG+AGG | + | chr4.1:50717585-50717604 | None:intergenic | 40.0% | |
| GGTTATTGTACCTATGTGTG+GGG | - | chr4.1:50718742-50718761 | MS.gene51326:intron | 40.0% | |
| GTGAGGATGTCATAGAATCA+GGG | - | chr4.1:50717195-50717214 | MS.gene51326:intron | 40.0% | |
| GTTTACTCAGACATATGGCA+TGG | - | chr4.1:50717835-50717854 | MS.gene51326:intron | 40.0% | |
| TACAACTTCAGGGAGATCAA+AGG | - | chr4.1:50720250-50720269 | MS.gene51326:CDS | 40.0% | |
| TACGACATTAGAGGTCATGT+CGG | + | chr4.1:50719667-50719686 | None:intergenic | 40.0% | |
| TATCTATGCACCAACTTGAG+GGG | - | chr4.1:50719143-50719162 | MS.gene51326:intron | 40.0% | |
| TCGACAAAGGAAGATACCAA+AGG | - | chr4.1:50718476-50718495 | MS.gene51326:intron | 40.0% | |
| TGAGCATCTCATAAGCAAGT+TGG | - | chr4.1:50719110-50719129 | MS.gene51326:intron | 40.0% | |
| TGAGGATGTCATAGAATCAG+GGG | - | chr4.1:50717196-50717215 | MS.gene51326:intron | 40.0% | |
| TGATTTCAAACTCTGTTGCG+AGG | + | chr4.1:50718273-50718292 | None:intergenic | 40.0% | |
| TGCTTATAAATTGGGACGGA+GGG | - | chr4.1:50719530-50719549 | MS.gene51326:intron | 40.0% | |
| TTGCTTATAAATTGGGACGG+AGG | - | chr4.1:50719529-50719548 | MS.gene51326:intron | 40.0% | |
| ! | ACAGATAGAAAGTCGACTTC+AGG | - | chr4.1:50718721-50718740 | MS.gene51326:intron | 40.0% |
| ! | ACTGGTTTCCTATGAGCTAT+TGG | + | chr4.1:50717509-50717528 | None:intergenic | 40.0% |
| ! | AGAAAACTGTGGGTTGTAAG+TGG | - | chr4.1:50717744-50717763 | MS.gene51326:intron | 40.0% |
| ! | CCCACAGTTTTCTTTCCAAT+CGG | + | chr4.1:50717737-50717756 | None:intergenic | 40.0% |
| ! | CTATGCTATTTGTAACAGGC+GGG | - | chr4.1:50720368-50720387 | MS.gene51326:CDS | 40.0% |
| ! | GAAAACTGTGGGTTGTAAGT+GGG | - | chr4.1:50717745-50717764 | MS.gene51326:intron | 40.0% |
| ! | GAAGAAGAAGTGTACATGGA+TGG | - | chr4.1:50717986-50718005 | MS.gene51326:intron | 40.0% |
| ! | GAAGGCAATGTATTGGTATG+TGG | + | chr4.1:50719344-50719363 | None:intergenic | 40.0% |
| ! | TGTTTCTACTTTCCTTGTGC+AGG | - | chr4.1:50720278-50720297 | MS.gene51326:CDS | 40.0% |
| ! | TTTTGACCAAGAGCTTAGCA+AGG | - | chr4.1:50719079-50719098 | MS.gene51326:intron | 40.0% |
| !! | TCAGCTGTTTGCTGATTTGA+AGG | + | chr4.1:50719057-50719076 | None:intergenic | 40.0% |
| !! | TGCTGATTTGAAGGCACAAA+AGG | + | chr4.1:50719048-50719067 | None:intergenic | 40.0% |
| !! | TTTGTAGGTTGATTCTCCCT+CGG | + | chr4.1:50717428-50717447 | None:intergenic | 40.0% |
| AACACAGCTTCCTTCCACTT+TGG | + | chr4.1:50717662-50717681 | None:intergenic | 45.0% | |
| AATGGCCCAAGGAATTTGTG+AGG | - | chr4.1:50718837-50718856 | MS.gene51326:intron | 45.0% | |
| ACAGTCATGAATCTGAACCG+AGG | - | chr4.1:50717408-50717427 | MS.gene51326:intron | 45.0% | |
| ACCTACTCCTTTCATGAGTG+AGG | - | chr4.1:50717178-50717197 | MS.gene51326:intron | 45.0% | |
| ACTTGTCCTTGCTAAGCTCT+TGG | + | chr4.1:50719088-50719107 | None:intergenic | 45.0% | |
| AGATATTTGAAGGCTTCCCC+CGG | - | chr4.1:50718622-50718641 | MS.gene51326:intron | 45.0% | |
| ATCTATGCACCAACTTGAGG+GGG | - | chr4.1:50719144-50719163 | MS.gene51326:intron | 45.0% | |
| ATGGCCCAAGGAATTTGTGA+GGG | - | chr4.1:50718838-50718857 | MS.gene51326:intron | 45.0% | |
| ATTAGCTGATTAGACCCGTG+CGG | - | chr4.1:50719916-50719935 | MS.gene51326:intron | 45.0% | |
| CAGTCATGAATCTGAACCGA+GGG | - | chr4.1:50717409-50717428 | MS.gene51326:intron | 45.0% | |
| CCATGTGAAAACACAGCACT+TGG | + | chr4.1:50719564-50719583 | None:intergenic | 45.0% | |
| CGGAGATGATGTGACAGAAA+TGG | - | chr4.1:50718231-50718250 | MS.gene51326:intron | 45.0% | |
| CTCTTGCTGCGAATTTGGAT+TGG | - | chr4.1:50717915-50717934 | MS.gene51326:intron | 45.0% | |
| GAAGTTGAGGGAACTTGGAA+AGG | - | chr4.1:50717329-50717348 | MS.gene51326:intron | 45.0% | |
| GAGTTTAGATCAATGGCCCA+AGG | - | chr4.1:50718826-50718845 | MS.gene51326:intron | 45.0% | |
| GATGCAGGTCATACAACTTC+AGG | - | chr4.1:50720239-50720258 | MS.gene51326:CDS | 45.0% | |
| TAAAGCAGTCTCCAAGAGCT+TGG | - | chr4.1:50718074-50718093 | MS.gene51326:intron | 45.0% | |
| TACCAAGTTTCCCCACACAT+AGG | + | chr4.1:50718755-50718774 | None:intergenic | 45.0% | |
| TACCTATGTGTGGGGAAACT+TGG | - | chr4.1:50718750-50718769 | MS.gene51326:intron | 45.0% | |
| TCAGATTCATGACTGTGCTG+AGG | + | chr4.1:50717404-50717423 | None:intergenic | 45.0% | |
| TCCTCACTCATGAAAGGAGT+AGG | + | chr4.1:50717182-50717201 | None:intergenic | 45.0% | |
| TCGTAAAGTACACTCCTGGT+GGG | - | chr4.1:50718164-50718183 | MS.gene51326:intron | 45.0% | |
| TGGTATCTTCCTTTGTCGAC+AGG | + | chr4.1:50718475-50718494 | None:intergenic | 45.0% | |
| TTCGTAAAGTACACTCCTGG+TGG | - | chr4.1:50718163-50718182 | MS.gene51326:intron | 45.0% | |
| TTGGAGAAGTTGAGGGAACT+TGG | - | chr4.1:50717324-50717343 | MS.gene51326:intron | 45.0% | |
| ! | AAAGAATAGGCCTTTTCCGG+GGG | + | chr4.1:50718641-50718660 | None:intergenic | 45.0% |
| ! | AAGGCAAGGTTGGTTGCTAA+AGG | - | chr4.1:50717812-50717831 | MS.gene51326:intron | 45.0% |
| ! | AGGCAAGGTTGGTTGCTAAA+GGG | - | chr4.1:50717813-50717832 | MS.gene51326:intron | 45.0% |
| ! | CAAAGAATAGGCCTTTTCCG+GGG | + | chr4.1:50718642-50718661 | None:intergenic | 45.0% |
| ! | CCAAAGAATAGGCCTTTTCC+GGG | + | chr4.1:50718643-50718662 | None:intergenic | 45.0% |
| ! | GCCAAAGAATAGGCCTTTTC+CGG | + | chr4.1:50718644-50718663 | None:intergenic | 45.0% |
| ! | GTGCTGTGTTTTCACATGGT+CGG | - | chr4.1:50719565-50719584 | MS.gene51326:intron | 45.0% |
| ! | TGTGGGGAAACTTGGTAACT+TGG | - | chr4.1:50718758-50718777 | MS.gene51326:intron | 45.0% |
| ! | TTTACTGATGCTGATTGGGC+AGG | - | chr4.1:50718691-50718710 | MS.gene51326:intron | 45.0% |
| !! | AAGGAATATCGGTGTCGCAA+CGG | - | chr4.1:50718347-50718366 | MS.gene51326:intron | 45.0% |
| !! | CCAAGTGCTGTGTTTTCACA+TGG | - | chr4.1:50719561-50719580 | MS.gene51326:intron | 45.0% |
| !! | TAAAATAGAATAATAATAAA+AGG | + | chr4.1:50719192-50719211 | None:intergenic | 5.0% |
| AATCGCATCACGGTCTCGTT+AGG | + | chr4.1:50719786-50719805 | None:intergenic | 50.0% | |
| AGTTGCAAGAAGCAGTGCAG+AGG | - | chr4.1:50718801-50718820 | MS.gene51326:intron | 50.0% | |
| CCCGGAAAAGGCCTATTCTT+TGG | - | chr4.1:50718640-50718659 | MS.gene51326:intron | 50.0% | |
| CTAACGGGGAAAGCAATGTC+AGG | + | chr4.1:50718538-50718557 | None:intergenic | 50.0% | |
| GTGGAAGGAAGCTGTGTTTG+AGG | - | chr4.1:50717664-50717683 | MS.gene51326:intron | 50.0% | |
| TAGACCTGCTGATACTCCCA+TGG | - | chr4.1:50718414-50718433 | MS.gene51326:intron | 50.0% | |
| TCTATGCACCAACTTGAGGG+GGG | - | chr4.1:50719145-50719164 | MS.gene51326:intron | 50.0% | |
| !! | TGCTTGGTGCAAGCTCTAAC+TGG | + | chr4.1:50717527-50717546 | None:intergenic | 50.0% |
| CTATGCACCAACTTGAGGGG+GGG | - | chr4.1:50719146-50719165 | MS.gene51326:intron | 55.0% | |
| GGGGACATACCTGTCGACAA+AGG | - | chr4.1:50718463-50718482 | MS.gene51326:intron | 55.0% | |
| GTGTACATGGATGGTCCTCC+AGG | - | chr4.1:50717995-50718014 | MS.gene51326:intron | 55.0% | |
| TTCAACACCCCCCCTCAAGT+TGG | + | chr4.1:50719156-50719175 | None:intergenic | 55.0% | |
| TTGAAGGCTTCCCCCGGAAA+AGG | - | chr4.1:50718628-50718647 | MS.gene51326:intron | 55.0% | |
| ! | GAACCTAGACATGGGGTGCT+TGG | + | chr4.1:50717543-50717562 | None:intergenic | 55.0% |
| !! | GGATCCATGGGAGTATCAGC+AGG | + | chr4.1:50718421-50718440 | None:intergenic | 55.0% |
| ATTAGACCCGTGCGGAGCAC+GGG | - | chr4.1:50719924-50719943 | MS.gene51326:intron | 60.0% | |
| GATTAGACCCGTGCGGAGCA+CGG | - | chr4.1:50719923-50719942 | MS.gene51326:intron | 60.0% | |
| GCACCAAGCACCCCATGTCT+AGG | - | chr4.1:50717537-50717556 | MS.gene51326:intron | 60.0% | |
| CATTGACCCGTGCTCCGCAC+GGG | + | chr4.1:50719933-50719952 | None:intergenic | 65.0% | |
| CCATTGACCCGTGCTCCGCA+CGG | + | chr4.1:50719934-50719953 | None:intergenic | 65.0% | |
| CCGTGCGGAGCACGGGTCAA+TGG | - | chr4.1:50719931-50719950 | MS.gene51326:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 50717113 | 50720398 | 50717113 | ID=MS.gene51326 |
| chr4.1 | mRNA | 50717113 | 50720398 | 50717113 | ID=MS.gene51326.t1;Parent=MS.gene51326 |
| chr4.1 | exon | 50719953 | 50720398 | 50719953 | ID=MS.gene51326.t1.exon1;Parent=MS.gene51326.t1 |
| chr4.1 | CDS | 50719953 | 50720398 | 50719953 | ID=cds.MS.gene51326.t1;Parent=MS.gene51326.t1 |
| chr4.1 | exon | 50717212 | 50717265 | 50717212 | ID=MS.gene51326.t1.exon2;Parent=MS.gene51326.t1 |
| chr4.1 | CDS | 50717212 | 50717265 | 50717212 | ID=cds.MS.gene51326.t1;Parent=MS.gene51326.t1 |
| chr4.1 | exon | 50717113 | 50717125 | 50717113 | ID=MS.gene51326.t1.exon3;Parent=MS.gene51326.t1 |
| chr4.1 | CDS | 50717113 | 50717125 | 50717113 | ID=cds.MS.gene51326.t1;Parent=MS.gene51326.t1 |
| Gene Sequence |
| Protein sequence |
