Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51365.t1 | XP_013455526.1 | 96.9 | 160 | 5 | 0 | 1 | 160 | 1 | 160 | 3.60E-81 | 310.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51365.t1 | A0A072UIQ5 | 96.9 | 160 | 5 | 0 | 1 | 160 | 1 | 160 | 2.6e-81 | 310.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049807 | MS.gene51365 | 0.826948 | 2.05E-54 | -1.69E-46 |
| MS.gene051648 | MS.gene51365 | 0.856448 | 3.20E-62 | -1.69E-46 |
| MS.gene053536 | MS.gene51365 | 0.87657 | 1.26E-68 | -1.69E-46 |
| MS.gene053538 | MS.gene51365 | 0.869799 | 2.36E-66 | -1.69E-46 |
| MS.gene053945 | MS.gene51365 | 0.817799 | 2.73E-52 | -1.69E-46 |
| MS.gene054142 | MS.gene51365 | 0.817866 | 2.64E-52 | -1.69E-46 |
| MS.gene055339 | MS.gene51365 | 0.802918 | 4.47E-49 | -1.69E-46 |
| MS.gene058386 | MS.gene51365 | 0.802361 | 5.82E-49 | -1.69E-46 |
| MS.gene058492 | MS.gene51365 | 0.808271 | 3.36E-50 | -1.69E-46 |
| MS.gene05894 | MS.gene51365 | 0.826749 | 2.29E-54 | -1.69E-46 |
| MS.gene059424 | MS.gene51365 | 0.874646 | 5.74E-68 | -1.69E-46 |
| MS.gene059778 | MS.gene51365 | 0.828132 | 1.07E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51365.t1 | MTR_4g045673 | 96.875 | 160 | 5 | 0 | 1 | 160 | 1 | 160 | 6.85e-112 | 314 |
| MS.gene51365.t1 | MTR_2g089050 | 70.886 | 158 | 46 | 0 | 1 | 158 | 1 | 158 | 7.54e-80 | 233 |
| MS.gene51365.t1 | MTR_4g092130 | 55.063 | 158 | 71 | 0 | 1 | 158 | 1 | 158 | 6.77e-67 | 201 |
| MS.gene51365.t1 | MTR_2g010840 | 54.430 | 158 | 72 | 0 | 1 | 158 | 1 | 158 | 2.16e-58 | 180 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51365.t1 | AT2G32280 | 63.750 | 160 | 58 | 0 | 1 | 160 | 1 | 160 | 2.58e-77 | 227 |
| MS.gene51365.t1 | AT2G32280 | 63.750 | 160 | 58 | 0 | 1 | 160 | 1 | 160 | 2.58e-77 | 227 |
| MS.gene51365.t1 | AT4G21310 | 62.658 | 158 | 59 | 0 | 1 | 158 | 1 | 158 | 8.23e-72 | 213 |
| MS.gene51365.t1 | AT4G21310 | 60.000 | 120 | 48 | 0 | 39 | 158 | 1 | 120 | 1.12e-51 | 161 |
| MS.gene51365.t1 | AT1G11500 | 38.750 | 160 | 91 | 1 | 6 | 158 | 6 | 165 | 9.81e-33 | 115 |
| MS.gene51365.t1 | AT1G11500 | 38.750 | 160 | 91 | 1 | 6 | 158 | 11 | 170 | 1.26e-32 | 115 |
| MS.gene51365.t1 | AT1G11500 | 42.105 | 114 | 66 | 0 | 45 | 158 | 24 | 137 | 1.84e-27 | 100 |
| MS.gene51365.t1 | AT1G05291 | 40.000 | 145 | 80 | 3 | 12 | 153 | 23 | 163 | 3.88e-24 | 93.6 |
Find 44 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGTTGCAGCTGGTATTCT+TGG | 0.255223 | 4.1:+51534039 | MS.gene51365:CDS |
| GTTGGGTGCAGCAGTGCTAT+TGG | 0.296588 | 4.1:+51534274 | MS.gene51365:CDS |
| TTGGGTGCAGCAGTGCTATT+GGG | 0.315421 | 4.1:+51534275 | MS.gene51365:CDS |
| CAATTGTGTTTGTTCTCAAC+AGG | 0.330421 | 4.1:+51534334 | MS.gene51365:CDS |
| ATTGCAACCACCTAACAAAT+TGG | 0.332978 | 4.1:-51534315 | None:intergenic |
| GGATTGTCCATGCTGGTAAT+AGG | 0.335567 | 4.1:+51535927 | MS.gene51365:CDS |
| AGTCATGATGCCTTCATGTT+GGG | 0.345983 | 4.1:+51534251 | MS.gene51365:CDS |
| TATATTACCAGGTTAAAATA+AGG | 0.351790 | 4.1:-51534400 | None:intergenic |
| GATTGTCCATGCTGGTAATA+GGG | 0.353853 | 4.1:+51535928 | MS.gene51365:CDS |
| CATTGTTACCACTGCTTCCA+TGG | 0.385326 | 4.1:+51536061 | MS.gene51365:CDS |
| ATCAGGGTTGTGGTGGCTGT+TGG | 0.394905 | 4.1:+51535906 | MS.gene51365:intron |
| CACCATCACTTTCTGTCCAT+TGG | 0.397413 | 4.1:+51535993 | MS.gene51365:CDS |
| GATGCCTTCATGTTGGGGTT+GGG | 0.408304 | 4.1:+51534257 | MS.gene51365:CDS |
| AAAGTACTGAGAGTTGTCTA+TGG | 0.408478 | 4.1:-51534376 | None:intergenic |
| AGCTGGTATTCTTGGCTTTG+AGG | 0.413890 | 4.1:+51534047 | MS.gene51365:CDS |
| TTGTCTCTTAATTGTTATCA+TGG | 0.414420 | 4.1:+51534017 | MS.gene51365:CDS |
| TGATGCCTTCATGTTGGGGT+TGG | 0.426974 | 4.1:+51534256 | MS.gene51365:CDS |
| ATCACTTTCTGTCCATTGGT+GGG | 0.474245 | 4.1:+51535997 | MS.gene51365:CDS |
| AAAACAGGTTAAGCATTTGA+AGG | 0.491275 | 4.1:+51534202 | MS.gene51365:intron |
| CATCACTTTCTGTCCATTGG+TGG | 0.493082 | 4.1:+51535996 | MS.gene51365:CDS |
| TGTGTTGTTGATCAGGGTTG+TGG | 0.499842 | 4.1:+51535896 | MS.gene51365:intron |
| TAGGGGCTATGTCAAACAAC+AGG | 0.503152 | 4.1:+51535946 | MS.gene51365:CDS |
| TGCAAAATGGCTAGAGTAGG+AGG | 0.517426 | 4.1:+51533985 | None:intergenic |
| AACATGAAGGCATCATGACT+TGG | 0.534290 | 4.1:-51534248 | None:intergenic |
| GTCATGATGCCTTCATGTTG+GGG | 0.535583 | 4.1:+51534252 | MS.gene51365:CDS |
| GGCTGTTGGATTGTCCATGC+TGG | 0.535782 | 4.1:+51535920 | MS.gene51365:CDS |
| TTCTCAACAGGAATTTGAGA+AGG | 0.542952 | 4.1:+51534346 | MS.gene51365:CDS |
| TCTTACAAAATACTAATCCA+TGG | 0.550482 | 4.1:-51536078 | None:intergenic |
| CTATGCAAAATGGCTAGAGT+AGG | 0.556055 | 4.1:+51533982 | None:intergenic |
| AGGTTAAGCATTTGAAGGTG+TGG | 0.557434 | 4.1:+51534207 | MS.gene51365:intron |
| AAGTCATGATGCCTTCATGT+TGG | 0.571287 | 4.1:+51534250 | MS.gene51365:CDS |
| ATTGTCCATGCTGGTAATAG+GGG | 0.576738 | 4.1:+51535929 | MS.gene51365:CDS |
| GTTATCATGGATGTTGCAGC+TGG | 0.584347 | 4.1:+51534030 | MS.gene51365:CDS |
| GTTGTTGATCAGGGTTGTGG+TGG | 0.588245 | 4.1:+51535899 | MS.gene51365:intron |
| AAGTACTGAGAGTTGTCTAT+GGG | 0.588754 | 4.1:-51534375 | None:intergenic |
| AAAACATGAAATCCCACCAA+TGG | 0.590722 | 4.1:-51536009 | None:intergenic |
| ATACTAATCCATGGAAGCAG+TGG | 0.591196 | 4.1:-51536069 | None:intergenic |
| TATGTCAAACAACAGGTCAA+AGG | 0.592422 | 4.1:+51535953 | MS.gene51365:CDS |
| TGCACCCAACCCCAACATGA+AGG | 0.603813 | 4.1:-51534261 | None:intergenic |
| TACTGAGAGTTGTCTATGGG+AGG | 0.604411 | 4.1:-51534372 | None:intergenic |
| AACAGGTCAAAGGATTCTTG+TGG | 0.609881 | 4.1:+51535963 | MS.gene51365:CDS |
| GGCTGAAACAGCACAAAACA+AGG | 0.611340 | 4.1:+51534068 | MS.gene51365:CDS |
| CATAGCCCCTATTACCAGCA+TGG | 0.640867 | 4.1:-51535934 | None:intergenic |
| CACCAATGGACAGAAAGTGA+TGG | 0.668068 | 4.1:-51535995 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTAATTTTATTTTTTT+TGG | - | chr4.1:51535590-51535609 | None:intergenic | 0.0% |
| !!! | TTTAAAATAAAAATAAATAA+AGG | - | chr4.1:51535112-51535131 | None:intergenic | 0.0% |
| !!! | AAATAGAACTTTTTTTAATT+GGG | + | chr4.1:51535426-51535445 | MS.gene51365:intron | 10.0% |
| !!! | TTTTGAAATAATTAATAACA+AGG | + | chr4.1:51534139-51534158 | MS.gene51365:intron | 10.0% |
| !!! | TTTTGTATTTTTTTTTCTTA+GGG | + | chr4.1:51535709-51535728 | MS.gene51365:intron | 10.0% |
| !! | AAAATGTTTGAATATCTAAT+CGG | + | chr4.1:51535047-51535066 | MS.gene51365:intron | 15.0% |
| !! | ATATTTAGTGAATCATTATT+TGG | - | chr4.1:51535859-51535878 | None:intergenic | 15.0% |
| !! | TTGCAATTAAGTAAAAAAAA+AGG | - | chr4.1:51534861-51534880 | None:intergenic | 15.0% |
| !!! | AATAGAACTTTTTTTAATTG+GGG | + | chr4.1:51535427-51535446 | MS.gene51365:intron | 15.0% |
| !!! | ATCCAAAATGAAAATTTTAT+AGG | + | chr4.1:51534794-51534813 | MS.gene51365:intron | 15.0% |
| !!! | ATCCAAATAAAATATTTTAC+AGG | - | chr4.1:51534549-51534568 | None:intergenic | 15.0% |
| !!! | CAAATAGAACTTTTTTTAAT+TGG | + | chr4.1:51535425-51535444 | MS.gene51365:intron | 15.0% |
| !!! | GTTTTGTATTTTTTTTTCTT+AGG | + | chr4.1:51535708-51535727 | MS.gene51365:intron | 15.0% |
| !!! | TCCAAAATGAAAATTTTATA+GGG | + | chr4.1:51534795-51534814 | MS.gene51365:intron | 15.0% |
| !!! | TCCAAATAAAATATTTTACA+GGG | - | chr4.1:51534548-51534567 | None:intergenic | 15.0% |
| !!! | TTGTAGTTTTTTTTTCTTAT+GGG | - | chr4.1:51535521-51535540 | None:intergenic | 15.0% |
| !!! | TTTGTAGTTTTTTTTTCTTA+TGG | - | chr4.1:51535522-51535541 | None:intergenic | 15.0% |
| !!! | TTTTTTATTTTGAACAAAAC+AGG | + | chr4.1:51534187-51534206 | MS.gene51365:intron | 15.0% |
| !! | AAAACTTCAAATTACAAAGA+CGG | + | chr4.1:51534770-51534789 | MS.gene51365:intron | 20.0% |
| !! | AAAATTTGCACAAATTAACA+GGG | - | chr4.1:51534689-51534708 | None:intergenic | 20.0% |
| !! | ATAAAATTAAAAATCACACG+TGG | + | chr4.1:51535596-51535615 | MS.gene51365:intron | 20.0% |
| !! | CAAATAATCTTCAAATTACA+AGG | - | chr4.1:51534577-51534596 | None:intergenic | 20.0% |
| !! | CTTGTAATTTGAAGATTATT+TGG | + | chr4.1:51534575-51534594 | MS.gene51365:intron | 20.0% |
| !! | TATATTACCAGGTTAAAATA+AGG | - | chr4.1:51534403-51534422 | None:intergenic | 20.0% |
| !! | TATCAGTTACATTTAGTTAT+TGG | - | chr4.1:51535816-51535835 | None:intergenic | 20.0% |
| !! | TATGTTTCCAAATAAAACTA+TGG | - | chr4.1:51535379-51535398 | None:intergenic | 20.0% |
| !!! | AATTTGAAGTTTTTTGGTTT+TGG | - | chr4.1:51534763-51534782 | None:intergenic | 20.0% |
| !!! | AATTTTATTTTTTTTGGCCT+TGG | - | chr4.1:51535584-51535603 | None:intergenic | 20.0% |
| !!! | ACATTTTGGTGTTATAATTT+AGG | - | chr4.1:51535785-51535804 | None:intergenic | 20.0% |
| !!! | ATTTTATTTTTTTTGGCCTT+GGG | - | chr4.1:51535583-51535602 | None:intergenic | 20.0% |
| !!! | CCAAAATGAAAATTTTATAG+GGG | + | chr4.1:51534796-51534815 | MS.gene51365:intron | 20.0% |
| !!! | CCAAATAAAATATTTTACAG+GGG | - | chr4.1:51534547-51534566 | None:intergenic | 20.0% |
| !!! | CTTTGTAATTTGAAGTTTTT+TGG | - | chr4.1:51534769-51534788 | None:intergenic | 20.0% |
| !!! | TATTGGATCAAAATACATTT+TGG | - | chr4.1:51535799-51535818 | None:intergenic | 20.0% |
| ! | AAAAACTGGAAATGACATAT+AGG | + | chr4.1:51534819-51534838 | MS.gene51365:intron | 25.0% |
| ! | AAAACTGGAAATGACATATA+GGG | + | chr4.1:51534820-51534839 | MS.gene51365:intron | 25.0% |
| ! | AAATTTGCACAAATTAACAG+GGG | - | chr4.1:51534688-51534707 | None:intergenic | 25.0% |
| ! | AACGTAAATTTGGAGAAAAT+TGG | - | chr4.1:51534944-51534963 | None:intergenic | 25.0% |
| ! | ACGTAAATTTGGAGAAAATT+GGG | - | chr4.1:51534943-51534962 | None:intergenic | 25.0% |
| ! | ATTGTACAAAATCGATGATA+TGG | - | chr4.1:51534724-51534743 | None:intergenic | 25.0% |
| ! | CAAAATTTGCACAAATTAAC+AGG | - | chr4.1:51534690-51534709 | None:intergenic | 25.0% |
| ! | GAAAATGACCTTTATTACAT+GGG | - | chr4.1:51534517-51534536 | None:intergenic | 25.0% |
| ! | GGGAGTTCATAATAAATTAT+AGG | + | chr4.1:51535447-51535466 | MS.gene51365:intron | 25.0% |
| ! | GTATCACAATGATACAATTT+AGG | + | chr4.1:51534893-51534912 | MS.gene51365:intron | 25.0% |
| ! | TTGGAATAACAAAACTAGTT+AGG | + | chr4.1:51534445-51534464 | MS.gene51365:intron | 25.0% |
| ! | TTGTATCATTGTGATACTTA+TGG | - | chr4.1:51534890-51534909 | None:intergenic | 25.0% |
| ! | TTGTCTCTTAATTGTTATCA+TGG | + | chr4.1:51534017-51534036 | MS.gene51365:CDS | 25.0% |
| !! | AAATTTTATAGGGGAAAAAC+TGG | + | chr4.1:51534805-51534824 | MS.gene51365:intron | 25.0% |
| !! | ATTTTCCTCCAAATTTTTCA+CGG | - | chr4.1:51535190-51535209 | None:intergenic | 25.0% |
| !! | CCCCTATAAAATTTTCATTT+TGG | - | chr4.1:51534799-51534818 | None:intergenic | 25.0% |
| !! | CCCCTGTAAAATATTTTATT+TGG | + | chr4.1:51534544-51534563 | MS.gene51365:intron | 25.0% |
| !!! | ACAATTAGGCCATTTTAATT+CGG | + | chr4.1:51535242-51535261 | MS.gene51365:intron | 25.0% |
| !!! | ATTTTAAAGAAAAGTGACAG+TGG | + | chr4.1:51535124-51535143 | MS.gene51365:intron | 25.0% |
| !!! | CATGTAATAAAGGTCATTTT+CGG | + | chr4.1:51534516-51534535 | MS.gene51365:intron | 25.0% |
| !!! | CTGTTAATTTGTGCAAATTT+TGG | + | chr4.1:51534688-51534707 | MS.gene51365:intron | 25.0% |
| !!! | TTTTATTTTTTTTGGCCTTG+GGG | - | chr4.1:51535582-51535601 | None:intergenic | 25.0% |
| AAAACAGGTTAAGCATTTGA+AGG | + | chr4.1:51534202-51534221 | MS.gene51365:intron | 30.0% | |
| AAACTGGAAATGACATATAG+GGG | + | chr4.1:51534821-51534840 | MS.gene51365:intron | 30.0% | |
| AAATTTCCTGAAATTACAGG+GGG | - | chr4.1:51534626-51534645 | None:intergenic | 30.0% | |
| AAATTTGGAGAAAATTGGGA+TGG | - | chr4.1:51534939-51534958 | None:intergenic | 30.0% | |
| AATTTGCACAAATTAACAGG+GGG | - | chr4.1:51534687-51534706 | None:intergenic | 30.0% | |
| AATTTGGAGAAAATTGGGAT+GGG | - | chr4.1:51534938-51534957 | None:intergenic | 30.0% | |
| ATGTCTTCTCAACGTAAATT+TGG | - | chr4.1:51534954-51534973 | None:intergenic | 30.0% | |
| CCTGTAATTTCAGGAAATTT+CGG | + | chr4.1:51534626-51534645 | MS.gene51365:intron | 30.0% | |
| CGAAAATGACCTTTATTACA+TGG | - | chr4.1:51534518-51534537 | None:intergenic | 30.0% | |
| CGAAATTTCCTGAAATTACA+GGG | - | chr4.1:51534628-51534647 | None:intergenic | 30.0% | |
| GAAATTTCCTGAAATTACAG+GGG | - | chr4.1:51534627-51534646 | None:intergenic | 30.0% | |
| GATCAACAACACAATCAAAA+GGG | - | chr4.1:51535889-51535908 | None:intergenic | 30.0% | |
| TGATCAACAACACAATCAAA+AGG | - | chr4.1:51535890-51535909 | None:intergenic | 30.0% | |
| ! | GTGTTTTACCCATGTAATAA+AGG | + | chr4.1:51534506-51534525 | MS.gene51365:intron | 30.0% |
| ! | TGAAATTTGCTCAAATTGCA+GGG | - | chr4.1:51534659-51534678 | None:intergenic | 30.0% |
| ! | TTAGGGTCAAAAGTACAATT+AGG | + | chr4.1:51535228-51535247 | MS.gene51365:intron | 30.0% |
| ! | TTTGATTGTGTTGTTGATCA+GGG | + | chr4.1:51535890-51535909 | MS.gene51365:intron | 30.0% |
| !! | TTTTGATTGTGTTGTTGATC+AGG | + | chr4.1:51535889-51535908 | MS.gene51365:intron | 30.0% |
| !!! | CATGTTTTAGCCAATTTGTT+AGG | + | chr4.1:51534305-51534324 | MS.gene51365:CDS | 30.0% |
| !!! | CTACGTACCATAGTTTTATT+TGG | + | chr4.1:51535369-51535388 | MS.gene51365:intron | 30.0% |
| !!! | TACTTTGCCTTATTTTAACC+TGG | + | chr4.1:51534393-51534412 | MS.gene51365:CDS | 30.0% |
| !!! | TAGTTTTGTTATTCCAAAGC+AGG | - | chr4.1:51534442-51534461 | None:intergenic | 30.0% |
| AAAACATGAAATCCCACCAA+TGG | - | chr4.1:51536012-51536031 | None:intergenic | 35.0% | |
| ACAAAATCGATGATATGGCA+GGG | - | chr4.1:51534719-51534738 | None:intergenic | 35.0% | |
| ATGGGGACTATAAAGCATAA+GGG | - | chr4.1:51534920-51534939 | None:intergenic | 35.0% | |
| ATTGCAACCACCTAACAAAT+TGG | - | chr4.1:51534318-51534337 | None:intergenic | 35.0% | |
| ATTGCACAATCACGAACTTA+GGG | + | chr4.1:51535211-51535230 | MS.gene51365:intron | 35.0% | |
| ATTTGGAGAAAATTGGGATG+GGG | - | chr4.1:51534937-51534956 | None:intergenic | 35.0% | |
| CAATTGTGTTTGTTCTCAAC+AGG | + | chr4.1:51534334-51534353 | MS.gene51365:CDS | 35.0% | |
| CCGAAATTTCCTGAAATTAC+AGG | - | chr4.1:51534629-51534648 | None:intergenic | 35.0% | |
| GTATCAAAGAATAGCCACAT+TGG | - | chr4.1:51535008-51535027 | None:intergenic | 35.0% | |
| TACAAAATCGATGATATGGC+AGG | - | chr4.1:51534720-51534739 | None:intergenic | 35.0% | |
| TATGTCAAACAACAGGTCAA+AGG | + | chr4.1:51535953-51535972 | MS.gene51365:CDS | 35.0% | |
| TATTGCACAATCACGAACTT+AGG | + | chr4.1:51535210-51535229 | MS.gene51365:intron | 35.0% | |
| TCGATTCAGCCGAATTAAAA+TGG | - | chr4.1:51535254-51535273 | None:intergenic | 35.0% | |
| TGCCACATGTACAAAACTTA+GGG | + | chr4.1:51535681-51535700 | MS.gene51365:intron | 35.0% | |
| TTCTCAACAGGAATTTGAGA+AGG | + | chr4.1:51534346-51534365 | MS.gene51365:CDS | 35.0% | |
| ! | ATCGCAACTTTGGAAAAGTT+AGG | + | chr4.1:51535739-51535758 | MS.gene51365:intron | 35.0% |
| ! | CTGAAATTTGCTCAAATTGC+AGG | - | chr4.1:51534660-51534679 | None:intergenic | 35.0% |
| ! | CTTTTCCAAAGTTGCGATTT+TGG | - | chr4.1:51535737-51535756 | None:intergenic | 35.0% |
| ! | TCGCAACTTTGGAAAAGTTA+GGG | + | chr4.1:51535740-51535759 | MS.gene51365:intron | 35.0% |
| ! | TGTCACTTCCGTGAAAAATT+TGG | + | chr4.1:51535179-51535198 | MS.gene51365:intron | 35.0% |
| ! | TTTTGTACATGTGGCAGTTT+TGG | - | chr4.1:51535677-51535696 | None:intergenic | 35.0% |
| !! | AAAGTACTGAGAGTTGTCTA+TGG | - | chr4.1:51534379-51534398 | None:intergenic | 35.0% |
| !! | AAGTACTGAGAGTTGTCTAT+GGG | - | chr4.1:51534378-51534397 | None:intergenic | 35.0% |
| !! | GGGATTTCATGTTTTGTTCA+TGG | + | chr4.1:51536017-51536036 | MS.gene51365:CDS | 35.0% |
| !!! | GTTTTAGCCAATTTGTTAGG+TGG | + | chr4.1:51534308-51534327 | MS.gene51365:CDS | 35.0% |
| AACAGGTCAAAGGATTCTTG+TGG | + | chr4.1:51535963-51535982 | MS.gene51365:CDS | 40.0% | |
| AACGTAGACCGAGTCAAAAT+TGG | + | chr4.1:51535642-51535661 | MS.gene51365:intron | 40.0% | |
| AAGTCATGATGCCTTCATGT+TGG | + | chr4.1:51534250-51534269 | MS.gene51365:CDS | 40.0% | |
| ACCGAGTCAAAATTGGCATT+GGG | + | chr4.1:51535649-51535668 | MS.gene51365:intron | 40.0% | |
| ACTATGGTACGTAGTCTATC+AGG | - | chr4.1:51535363-51535382 | None:intergenic | 40.0% | |
| AGAGGCAGAGATATATTACC+AGG | - | chr4.1:51534414-51534433 | None:intergenic | 40.0% | |
| AGGTTAAGCATTTGAAGGTG+TGG | + | chr4.1:51534207-51534226 | MS.gene51365:intron | 40.0% | |
| AGTCATGATGCCTTCATGTT+GGG | + | chr4.1:51534251-51534270 | MS.gene51365:CDS | 40.0% | |
| ATCACTTTCTGTCCATTGGT+GGG | + | chr4.1:51535997-51536016 | MS.gene51365:CDS | 40.0% | |
| ATCGCAACTTCGTGAAAGTT+AGG | - | chr4.1:51535493-51535512 | None:intergenic | 40.0% | |
| ATTGTCCATGCTGGTAATAG+GGG | + | chr4.1:51535929-51535948 | MS.gene51365:CDS | 40.0% | |
| CAAAATCGATGATATGGCAG+GGG | - | chr4.1:51534718-51534737 | None:intergenic | 40.0% | |
| CACTTCCGTGAAAAATTTGG+AGG | + | chr4.1:51535182-51535201 | MS.gene51365:intron | 40.0% | |
| CCACATGTACAAAACTTAGG+GGG | + | chr4.1:51535683-51535702 | MS.gene51365:intron | 40.0% | |
| CTGCCACATGTACAAAACTT+AGG | + | chr4.1:51535680-51535699 | MS.gene51365:intron | 40.0% | |
| GATGGGGACTATAAAGCATA+AGG | - | chr4.1:51534921-51534940 | None:intergenic | 40.0% | |
| GATTGTCCATGCTGGTAATA+GGG | + | chr4.1:51535928-51535947 | MS.gene51365:CDS | 40.0% | |
| GCCACATGTACAAAACTTAG+GGG | + | chr4.1:51535682-51535701 | MS.gene51365:intron | 40.0% | |
| TCGCAACTTCGTGAAAGTTA+GGG | - | chr4.1:51535492-51535511 | None:intergenic | 40.0% | |
| TGCTACAGTGGCAAAACTTA+GGG | - | chr4.1:51535551-51535570 | None:intergenic | 40.0% | |
| TGGGGACTATAAAGCATAAG+GGG | - | chr4.1:51534919-51534938 | None:intergenic | 40.0% | |
| ! | AATTTGCTCAAATTGCAGGG+AGG | - | chr4.1:51534656-51534675 | None:intergenic | 40.0% |
| ! | ATTTTGCCCCCTGTAATTTC+AGG | + | chr4.1:51534617-51534636 | MS.gene51365:intron | 40.0% |
| ! | CGCAACTTTGGAAAAGTTAG+GGG | + | chr4.1:51535741-51535760 | MS.gene51365:intron | 40.0% |
| ! | CTTTCACGAAGTTGCGATTT+TGG | + | chr4.1:51535495-51535514 | MS.gene51365:intron | 40.0% |
| ! | GCAACTTTGGAAAAGTTAGG+GGG | + | chr4.1:51535742-51535761 | MS.gene51365:intron | 40.0% |
| ! | GGGGGCAAAATTTTTCATGA+AGG | - | chr4.1:51534608-51534627 | None:intergenic | 40.0% |
| ! | TTGTTATTCCAAAGCAGGAC+AGG | - | chr4.1:51534437-51534456 | None:intergenic | 40.0% |
| ! | TTTTGCCACTGTAGCAGTTT+TGG | + | chr4.1:51535555-51535574 | MS.gene51365:intron | 40.0% |
| !! | AACATGAAGGCATCATGACT+TGG | - | chr4.1:51534251-51534270 | None:intergenic | 40.0% |
| CACCAATGGACAGAAAGTGA+TGG | - | chr4.1:51535998-51536017 | None:intergenic | 45.0% | |
| CACCATCACTTTCTGTCCAT+TGG | + | chr4.1:51535993-51536012 | MS.gene51365:CDS | 45.0% | |
| CATCACTTTCTGTCCATTGG+TGG | + | chr4.1:51535996-51536015 | MS.gene51365:CDS | 45.0% | |
| CATGTACAAAACTTAGGGGG+CGG | + | chr4.1:51535686-51535705 | MS.gene51365:intron | 45.0% | |
| CATTGTTACCACTGCTTCCA+TGG | + | chr4.1:51536061-51536080 | MS.gene51365:CDS | 45.0% | |
| CCGAGTCAAAATTGGCATTG+GGG | + | chr4.1:51535650-51535669 | MS.gene51365:intron | 45.0% | |
| CGCAACTTCGTGAAAGTTAG+GGG | - | chr4.1:51535491-51535510 | None:intergenic | 45.0% | |
| CTACAGTGGCAAAACTTAGG+GGG | - | chr4.1:51535549-51535568 | None:intergenic | 45.0% | |
| CTGCTACAGTGGCAAAACTT+AGG | - | chr4.1:51535552-51535571 | None:intergenic | 45.0% | |
| GACCGAGTCAAAATTGGCAT+TGG | + | chr4.1:51535648-51535667 | MS.gene51365:intron | 45.0% | |
| GATGTTGCAGCTGGTATTCT+TGG | + | chr4.1:51534039-51534058 | MS.gene51365:CDS | 45.0% | |
| GCAACTTCGTGAAAGTTAGG+GGG | - | chr4.1:51535490-51535509 | None:intergenic | 45.0% | |
| GCTACAGTGGCAAAACTTAG+GGG | - | chr4.1:51535550-51535569 | None:intergenic | 45.0% | |
| GGATTGTCCATGCTGGTAAT+AGG | + | chr4.1:51535927-51535946 | MS.gene51365:CDS | 45.0% | |
| GGCTGAAACAGCACAAAACA+AGG | + | chr4.1:51534068-51534087 | MS.gene51365:CDS | 45.0% | |
| GTCATGATGCCTTCATGTTG+GGG | + | chr4.1:51534252-51534271 | MS.gene51365:CDS | 45.0% | |
| GTTATCATGGATGTTGCAGC+TGG | + | chr4.1:51534030-51534049 | MS.gene51365:CDS | 45.0% | |
| TACTGAGAGTTGTCTATGGG+AGG | - | chr4.1:51534375-51534394 | None:intergenic | 45.0% | |
| TAGGGGCTATGTCAAACAAC+AGG | + | chr4.1:51535946-51535965 | MS.gene51365:CDS | 45.0% | |
| ! | TGTGTTGTTGATCAGGGTTG+TGG | + | chr4.1:51535896-51535915 | MS.gene51365:intron | 45.0% |
| !! | AGCTGGTATTCTTGGCTTTG+AGG | + | chr4.1:51534047-51534066 | MS.gene51365:CDS | 45.0% |
| !! | CCCCCTAAGTTTTGTACATG+TGG | - | chr4.1:51535686-51535705 | None:intergenic | 45.0% |
| !!! | CCCCAATGCCAATTTTGACT+CGG | - | chr4.1:51535653-51535672 | None:intergenic | 45.0% |
| ATTCCAAAGCAGGACAGGAG+AGG | - | chr4.1:51534432-51534451 | None:intergenic | 50.0% | |
| CATAGCCCCTATTACCAGCA+TGG | - | chr4.1:51535937-51535956 | None:intergenic | 50.0% | |
| CCACATTGGCCAAGAGAGTT+GGG | - | chr4.1:51534994-51535013 | None:intergenic | 50.0% | |
| GATGCCTTCATGTTGGGGTT+GGG | + | chr4.1:51534257-51534276 | MS.gene51365:CDS | 50.0% | |
| GGGAGCCAAAATCGCAACTT+TGG | + | chr4.1:51535729-51535748 | MS.gene51365:intron | 50.0% | |
| GTTGTTGATCAGGGTTGTGG+TGG | + | chr4.1:51535899-51535918 | MS.gene51365:intron | 50.0% | |
| TGATGCCTTCATGTTGGGGT+TGG | + | chr4.1:51534256-51534275 | MS.gene51365:CDS | 50.0% | |
| ! | TTGGGTGCAGCAGTGCTATT+GGG | + | chr4.1:51534275-51534294 | MS.gene51365:CDS | 50.0% |
| !! | TGTAGCAGTTTTGGTCCCCA+AGG | + | chr4.1:51535564-51535583 | MS.gene51365:intron | 50.0% |
| ATCAGGGTTGTGGTGGCTGT+TGG | + | chr4.1:51535906-51535925 | MS.gene51365:intron | 55.0% | |
| CACACGTGGCAGCTCACTTA+GGG | + | chr4.1:51535610-51535629 | MS.gene51365:intron | 55.0% | |
| CCCAACTCTCTTGGCCAATG+TGG | + | chr4.1:51534991-51535010 | MS.gene51365:intron | 55.0% | |
| GACGTGACTCCCAACTCTCT+TGG | + | chr4.1:51534982-51535001 | MS.gene51365:intron | 55.0% | |
| GCCACATTGGCCAAGAGAGT+TGG | - | chr4.1:51534995-51535014 | None:intergenic | 55.0% | |
| GGCTGTTGGATTGTCCATGC+TGG | + | chr4.1:51535920-51535939 | MS.gene51365:CDS | 55.0% | |
| GGGGACCAAAACTGCTACAG+TGG | - | chr4.1:51535563-51535582 | None:intergenic | 55.0% | |
| GTTGGGTGCAGCAGTGCTAT+TGG | + | chr4.1:51534274-51534293 | MS.gene51365:CDS | 55.0% | |
| TCACACGTGGCAGCTCACTT+AGG | + | chr4.1:51535609-51535628 | MS.gene51365:intron | 55.0% | |
| TGCACCCAACCCCAACATGA+AGG | - | chr4.1:51534264-51534283 | None:intergenic | 55.0% | |
| !! | TGACTCGGTCTACGTTGACG+TGG | - | chr4.1:51535638-51535657 | None:intergenic | 55.0% |
| CTGCCTCTCCTGTCCTGCTT+TGG | + | chr4.1:51534426-51534445 | MS.gene51365:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 51533991 | 51536088 | 51533991 | ID=MS.gene51365 |
| chr4.1 | mRNA | 51533991 | 51536088 | 51533991 | ID=MS.gene51365.t1;Parent=MS.gene51365 |
| chr4.1 | exon | 51533991 | 51534089 | 51533991 | ID=MS.gene51365.t1.exon1;Parent=MS.gene51365.t1 |
| chr4.1 | CDS | 51533991 | 51534089 | 51533991 | ID=cds.MS.gene51365.t1;Parent=MS.gene51365.t1 |
| chr4.1 | exon | 51534209 | 51534414 | 51534209 | ID=MS.gene51365.t1.exon2;Parent=MS.gene51365.t1 |
| chr4.1 | CDS | 51534209 | 51534414 | 51534209 | ID=cds.MS.gene51365.t1;Parent=MS.gene51365.t1 |
| chr4.1 | exon | 51535911 | 51536088 | 51535911 | ID=MS.gene51365.t1.exon3;Parent=MS.gene51365.t1 |
| chr4.1 | CDS | 51535911 | 51536088 | 51535911 | ID=cds.MS.gene51365.t1;Parent=MS.gene51365.t1 |
| Gene Sequence |
| Protein sequence |
