Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51531.t1 | XP_003598135.1 | 84.5 | 406 | 38 | 1 | 1 | 381 | 1 | 406 | 1.70E-142 | 515.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51531.t1 | D9UBX6 | 44.4 | 90 | 49 | 1 | 20 | 109 | 16 | 104 | 2.2e-16 | 88.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51531.t1 | G7IVB3 | 84.5 | 406 | 38 | 1 | 1 | 381 | 1 | 406 | 1.3e-142 | 515.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049698 | MS.gene51531 | 0.813624 | 2.33E-51 | -1.69E-46 |
| MS.gene058351 | MS.gene51531 | 0.810289 | 1.24E-50 | -1.69E-46 |
| MS.gene058909 | MS.gene51531 | 0.81634 | 5.82E-52 | -1.69E-46 |
| MS.gene058912 | MS.gene51531 | 0.81493 | 1.20E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51531.t1 | MTR_3g007660 | 89.409 | 406 | 18 | 1 | 1 | 381 | 1 | 406 | 0.0 | 721 |
| MS.gene51531.t1 | MTR_8g046245 | 36.591 | 440 | 187 | 17 | 1 | 377 | 1 | 411 | 3.36e-48 | 168 |
| MS.gene51531.t1 | MTR_5g087470 | 36.735 | 98 | 60 | 2 | 11 | 108 | 4 | 99 | 2.85e-13 | 69.7 |
| MS.gene51531.t1 | MTR_5g087450 | 31.343 | 134 | 71 | 5 | 19 | 142 | 13 | 135 | 7.03e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51531.t1 | AT5G04890 | 44.944 | 89 | 48 | 1 | 20 | 108 | 16 | 103 | 1.35e-19 | 89.7 |
| MS.gene51531.t1 | AT2G27140 | 32.787 | 122 | 79 | 3 | 17 | 138 | 11 | 129 | 9.44e-14 | 70.5 |
| MS.gene51531.t1 | AT3G10680 | 32.692 | 104 | 69 | 1 | 4 | 107 | 7 | 109 | 1.48e-13 | 72.4 |
Find 73 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTTCAACTTGTGATTTA+AGG | 0.135801 | 3.4:+3251926 | None:intergenic |
| AAAGCCTTTAGTTGCAAATA+TGG | 0.210552 | 3.4:-3251212 | MS.gene51531:CDS |
| GCTAGAAGAGATAAACTTAT+AGG | 0.216530 | 3.4:+3251147 | None:intergenic |
| CTTCAAGGCAAGTTTGAAAA+TGG | 0.223575 | 3.4:-3251985 | MS.gene51531:CDS |
| AAAGTTTCATACACAGGATT+TGG | 0.240469 | 3.4:+3252927 | None:intergenic |
| TTGGTTCCCTTGGGTGTTCT+AGG | 0.258214 | 3.4:+3251880 | None:intergenic |
| ACCTTCTTGTCTCTAATTAT+AGG | 0.272544 | 3.4:+3251820 | None:intergenic |
| CTCCATTAATCCTTAGTGTT+CGG | 0.276081 | 3.4:+3252088 | None:intergenic |
| CCCTTGGGTGTTCTAGGACT+TGG | 0.288101 | 3.4:+3251886 | None:intergenic |
| TCCATTAATCCTTAGTGTTC+GGG | 0.297124 | 3.4:+3252089 | None:intergenic |
| TTTCTTCACATTCACCTTCC+TGG | 0.298848 | 3.4:-3252864 | MS.gene51531:intron |
| ATCAAAAGGAGAAGAATATT+TGG | 0.299073 | 3.4:-3251398 | MS.gene51531:CDS |
| CAGAATATGATTGGTCAAAT+AGG | 0.302570 | 3.4:+3252034 | None:intergenic |
| AAGTTTCATACACAGGATTT+GGG | 0.304860 | 3.4:+3252928 | None:intergenic |
| TCCCGAACACTAAGGATTAA+TGG | 0.308064 | 3.4:-3252090 | MS.gene51531:CDS |
| CTCAAGTTGTCAAGAGAATA+GGG | 0.320215 | 3.4:-3251258 | MS.gene51531:CDS |
| TGGAGGCTTTGAAGGAATAT+TGG | 0.320768 | 3.4:+3251861 | None:intergenic |
| TTTAGAAGGAAAAGAAATAA+AGG | 0.334192 | 3.4:-3251434 | MS.gene51531:CDS |
| TTTGACTTGGAAAAGTATCT+TGG | 0.347158 | 3.4:+3251728 | None:intergenic |
| TGAAGGAATATTGGTTCCCT+TGG | 0.376353 | 3.4:+3251870 | None:intergenic |
| AACAAGTTGAAGGAACAAAA+AGG | 0.378553 | 3.4:-3251754 | MS.gene51531:CDS |
| ACTCTAGTTGGAGGCTTTGA+AGG | 0.393913 | 3.4:+3251853 | None:intergenic |
| TGTTTCAACTTGTGATTTAA+GGG | 0.399467 | 3.4:+3251927 | None:intergenic |
| TTTCTGGAACAGAATATGAT+TGG | 0.403613 | 3.4:+3252025 | None:intergenic |
| TCTCAAGTTGTCAAGAGAAT+AGG | 0.415456 | 3.4:-3251259 | MS.gene51531:CDS |
| AACCCTGTCACAATATTACT+TGG | 0.426130 | 3.4:+3251787 | None:intergenic |
| CCAACCCAAGGCAGAATTGA+AGG | 0.427450 | 3.4:-3252904 | MS.gene51531:CDS |
| GAAGGAATATTGGTTCCCTT+GGG | 0.429823 | 3.4:+3251871 | None:intergenic |
| TCTCCAAGTAATATTGTGAC+AGG | 0.442725 | 3.4:-3251790 | MS.gene51531:CDS |
| CCTTCAATTCTGCCTTGGGT+TGG | 0.447147 | 3.4:+3252904 | None:intergenic |
| GAGGATAAATATCAAATTTG+TGG | 0.447215 | 3.4:-3252118 | MS.gene51531:CDS |
| TTGACTTGGAAAAGTATCTT+GGG | 0.454151 | 3.4:+3251729 | None:intergenic |
| AAGCCTTTAGTTGCAAATAT+GGG | 0.459552 | 3.4:-3251211 | MS.gene51531:CDS |
| GGTTCTTCTAGTACTCTAGT+TGG | 0.460763 | 3.4:+3251841 | None:intergenic |
| AGGATAAATATCAAATTTGT+GGG | 0.471872 | 3.4:-3252117 | MS.gene51531:CDS |
| GCAAGAAAAGAGTCATCAAA+AGG | 0.472949 | 3.4:-3251412 | MS.gene51531:CDS |
| TAGACCTCAAAATGTTTATG+AGG | 0.473198 | 3.4:-3251662 | MS.gene51531:CDS |
| GCACCCATATTTGCAACTAA+AGG | 0.477234 | 3.4:+3251208 | None:intergenic |
| TGAGGTCTAGATTCTACAAA+GGG | 0.477686 | 3.4:+3251676 | None:intergenic |
| TCTTCTAGTACTCTAGTTGG+AGG | 0.480814 | 3.4:+3251844 | None:intergenic |
| TCAACTTGTGATTTAAGGGA+TGG | 0.486917 | 3.4:+3251931 | None:intergenic |
| TGAAAAGTATACAAAAGAGA+AGG | 0.489401 | 3.4:-3251311 | MS.gene51531:CDS |
| AAAAGATGCAAAGAAGGAAA+AGG | 0.493150 | 3.4:-3251371 | MS.gene51531:CDS |
| TGTGAGGTGGAGAAACTTCA+AGG | 0.500541 | 3.4:-3252000 | MS.gene51531:CDS |
| AACTACTTGGTAGCAACAAA+TGG | 0.500941 | 3.4:-3252059 | MS.gene51531:CDS |
| ATTCTAGTAATTGTTGCACT+TGG | 0.506438 | 3.4:-3251181 | MS.gene51531:CDS |
| GGCTGCAAAAGATGCAAAGA+AGG | 0.510641 | 3.4:-3251377 | MS.gene51531:CDS |
| CACTAAGGATTAATGGAGAA+AGG | 0.511754 | 3.4:-3252083 | MS.gene51531:CDS |
| ACAATATTACTTGGAGATGA+AGG | 0.514944 | 3.4:+3251796 | None:intergenic |
| TTTCCAAGTCAAAGTCCTAA+GGG | 0.518428 | 3.4:-3251718 | MS.gene51531:CDS |
| AAATGACTTGAACAAGTTGA+AGG | 0.526624 | 3.4:-3251764 | MS.gene51531:CDS |
| CAACTTGTGATTTAAGGGAT+GGG | 0.528671 | 3.4:+3251932 | None:intergenic |
| ACCTATAATTAGAGACAAGA+AGG | 0.529275 | 3.4:-3251821 | MS.gene51531:CDS |
| GGCAGAATTGAAGGAAAATG+AGG | 0.534459 | 3.4:-3252895 | MS.gene51531:CDS |
| AATGGAGAAAGGCAACTACT+TGG | 0.540238 | 3.4:-3252072 | MS.gene51531:CDS |
| TGGGACTCTCCCGAACACTA+AGG | 0.543028 | 3.4:-3252098 | MS.gene51531:CDS |
| CAAAGCAAAGAGGTATAAGA+AGG | 0.543303 | 3.4:-3251335 | MS.gene51531:CDS |
| GAAGGGAATCTTCAAAGAAG+TGG | 0.546448 | 3.4:-3251293 | MS.gene51531:CDS |
| TTTCCCTTAGGACTTTGACT+TGG | 0.546496 | 3.4:+3251715 | None:intergenic |
| GAAAAGTATACAAAAGAGAA+GGG | 0.549687 | 3.4:-3251310 | MS.gene51531:CDS |
| GGTTGGAAAGTTTCATACAC+AGG | 0.568545 | 3.4:+3252921 | None:intergenic |
| TCATACACAGGATTTGGGGA+AGG | 0.574199 | 3.4:+3252933 | None:intergenic |
| TTGAGGTCTAGATTCTACAA+AGG | 0.598222 | 3.4:+3251675 | None:intergenic |
| GCCAAGTCCTAGAACACCCA+AGG | 0.612732 | 3.4:-3251887 | MS.gene51531:CDS |
| TGTTCCAGAAAATTGTGAGG+TGG | 0.616853 | 3.4:-3252013 | MS.gene51531:CDS |
| GTATGAAACTTTCCAACCCA+AGG | 0.630238 | 3.4:-3252916 | MS.gene51531:CDS |
| TCAAGTTGTCAAGAGAATAG+GGG | 0.639104 | 3.4:-3251257 | MS.gene51531:CDS |
| CTACAATTGACAAAGCAAAG+AGG | 0.640484 | 3.4:-3251345 | MS.gene51531:CDS |
| CTCCAAGTAATATTGTGACA+GGG | 0.641452 | 3.4:-3251789 | MS.gene51531:CDS |
| TTCTGTTCCAGAAAATTGTG+AGG | 0.646990 | 3.4:-3252016 | MS.gene51531:CDS |
| AGTTTCATACACAGGATTTG+GGG | 0.655568 | 3.4:+3252929 | None:intergenic |
| GTTGTCAAGAGAATAGGGGA+AGG | 0.658130 | 3.4:-3251253 | MS.gene51531:CDS |
| CCAAGTCCTAGAACACCCAA+GGG | 0.690447 | 3.4:-3251886 | MS.gene51531:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTACTTATTAGTCTT+TGG | + | chr3.4:3251330-3251349 | None:intergenic | 15.0% |
| !!! | TTTTTTAATTGCTTCTAATA+TGG | + | chr3.4:3252546-3252565 | None:intergenic | 15.0% |
| !! | AAAAAATTCAAGAGGAAAAT+AGG | - | chr3.4:3252513-3252532 | MS.gene51531:intron | 20.0% |
| !! | AGGATAAATATCAAATTTGT+GGG | - | chr3.4:3251993-3252012 | MS.gene51531:CDS | 20.0% |
| !! | CTTTAAATTCTACGTAATAT+TGG | - | chr3.4:3251298-3251317 | MS.gene51531:CDS | 20.0% |
| !! | TTTAGAAGGAAAAGAAATAA+AGG | - | chr3.4:3252676-3252695 | MS.gene51531:intron | 20.0% |
| !!! | AAATGTGATCCTTTAAAATA+TGG | + | chr3.4:3251401-3251420 | None:intergenic | 20.0% |
| !!! | TTAACTAAAGTTGATGTATT+CGG | + | chr3.4:3251849-3251868 | None:intergenic | 20.0% |
| !!! | TTTGATTTGTTTTTTGTTCT+AGG | - | chr3.4:3251363-3251382 | MS.gene51531:CDS | 20.0% |
| ! | AAATTCTACGTAATATTGGA+GGG | - | chr3.4:3251302-3251321 | MS.gene51531:CDS | 25.0% |
| ! | AATTAAAAAACAATTGCACG+AGG | - | chr3.4:3252556-3252575 | MS.gene51531:intron | 25.0% |
| ! | AGATGATGAAAAAATTCAAG+AGG | - | chr3.4:3252505-3252524 | MS.gene51531:intron | 25.0% |
| ! | ATCAAAAGGAGAAGAATATT+TGG | - | chr3.4:3252712-3252731 | MS.gene51531:intron | 25.0% |
| ! | GAGGATAAATATCAAATTTG+TGG | - | chr3.4:3251992-3252011 | MS.gene51531:CDS | 25.0% |
| ! | TAAATTCTACGTAATATTGG+AGG | - | chr3.4:3251301-3251320 | MS.gene51531:CDS | 25.0% |
| ! | TGTTTCAACTTGTGATTTAA+GGG | + | chr3.4:3252186-3252205 | None:intergenic | 25.0% |
| ! | TTGTTTCAACTTGTGATTTA+AGG | + | chr3.4:3252187-3252206 | None:intergenic | 25.0% |
| !! | CTTTTACAAAAAGGATCAAA+GGG | + | chr3.4:3251781-3251800 | None:intergenic | 25.0% |
| !! | GAAAAGTATACAAAAGAGAA+GGG | - | chr3.4:3252800-3252819 | MS.gene51531:intron | 25.0% |
| !! | TCTTTTACAAAAAGGATCAA+AGG | + | chr3.4:3251782-3251801 | None:intergenic | 25.0% |
| !! | TGAAAAGTATACAAAAGAGA+AGG | - | chr3.4:3252799-3252818 | MS.gene51531:intron | 25.0% |
| !! | TTTTCCTCATAAACATTTTG+AGG | + | chr3.4:3252455-3252474 | None:intergenic | 25.0% |
| !! | TTTTTCATCATCTATTGCTT+GGG | + | chr3.4:3252498-3252517 | None:intergenic | 25.0% |
| !!! | TTTTTTCATCATCTATTGCT+TGG | + | chr3.4:3252499-3252518 | None:intergenic | 25.0% |
| AAAAACAAAAAATACGCACC+AGG | + | chr3.4:3251267-3251286 | None:intergenic | 30.0% | |
| AAAAGATGCAAAGAAGGAAA+AGG | - | chr3.4:3252739-3252758 | MS.gene51531:intron | 30.0% | |
| AAAGCCTTTAGTTGCAAATA+TGG | - | chr3.4:3252898-3252917 | MS.gene51531:CDS | 30.0% | |
| AAAGTTTCATACACAGGATT+TGG | + | chr3.4:3251186-3251205 | None:intergenic | 30.0% | |
| AAGCCTTTAGTTGCAAATAT+GGG | - | chr3.4:3252899-3252918 | MS.gene51531:CDS | 30.0% | |
| AAGTTTCATACACAGGATTT+GGG | + | chr3.4:3251185-3251204 | None:intergenic | 30.0% | |
| AATTCTACGTAATATTGGAG+GGG | - | chr3.4:3251303-3251322 | MS.gene51531:CDS | 30.0% | |
| ACAATATTACTTGGAGATGA+AGG | + | chr3.4:3252317-3252336 | None:intergenic | 30.0% | |
| ACCTATAATTAGAGACAAGA+AGG | - | chr3.4:3252289-3252308 | MS.gene51531:intron | 30.0% | |
| ACCTTCTTGTCTCTAATTAT+AGG | + | chr3.4:3252293-3252312 | None:intergenic | 30.0% | |
| ATTCTAGTAATTGTTGCACT+TGG | - | chr3.4:3252929-3252948 | MS.gene51531:CDS | 30.0% | |
| GCTAGAAGAGATAAACTTAT+AGG | + | chr3.4:3252966-3252985 | None:intergenic | 30.0% | |
| TAGACCTCAAAATGTTTATG+AGG | - | chr3.4:3252448-3252467 | MS.gene51531:intron | 30.0% | |
| ! | AAAGCTTTCAATTTTCCCTT+AGG | + | chr3.4:3252410-3252429 | None:intergenic | 30.0% |
| ! | AAATGACTTGAACAAGTTGA+AGG | - | chr3.4:3252346-3252365 | MS.gene51531:intron | 30.0% |
| ! | AACAAGTTGAAGGAACAAAA+AGG | - | chr3.4:3252356-3252375 | MS.gene51531:intron | 30.0% |
| ! | CAGAATATGATTGGTCAAAT+AGG | + | chr3.4:3252079-3252098 | None:intergenic | 30.0% |
| ! | CCTACTTGTCTTTTACAAAA+AGG | + | chr3.4:3251790-3251809 | None:intergenic | 30.0% |
| ! | CCTTTTTGTAAAAGACAAGT+AGG | - | chr3.4:3251787-3251806 | MS.gene51531:CDS | 30.0% |
| !! | GATCACAATACGTTTTTAGA+AGG | - | chr3.4:3252662-3252681 | MS.gene51531:intron | 30.0% |
| !! | TGATTTGGTTGTATTGACTT+GGG | - | chr3.4:3251532-3251551 | MS.gene51531:CDS | 30.0% |
| !! | TGTGATCCTTTAAAATATGG+AGG | + | chr3.4:3251398-3251417 | None:intergenic | 30.0% |
| !! | TGTTCTGCAAGGTTTTATAA+AGG | - | chr3.4:3251968-3251987 | MS.gene51531:CDS | 30.0% |
| !! | TTGACTTGGAAAAGTATCTT+GGG | + | chr3.4:3252384-3252403 | None:intergenic | 30.0% |
| !! | TTGATTTGGTTGTATTGACT+TGG | - | chr3.4:3251531-3251550 | MS.gene51531:CDS | 30.0% |
| !! | TTTCTGGAACAGAATATGAT+TGG | + | chr3.4:3252088-3252107 | None:intergenic | 30.0% |
| !! | TTTGACTTGGAAAAGTATCT+TGG | + | chr3.4:3252385-3252404 | None:intergenic | 30.0% |
| !!! | ACTTGGCACAATTTTTTCTT+TGG | + | chr3.4:3252210-3252229 | None:intergenic | 30.0% |
| AACCCTGTCACAATATTACT+TGG | + | chr3.4:3252326-3252345 | None:intergenic | 35.0% | |
| AGTTTCATACACAGGATTTG+GGG | + | chr3.4:3251184-3251203 | None:intergenic | 35.0% | |
| ATTCTCCTCGATGTCAATTT+GGG | - | chr3.4:3251594-3251613 | MS.gene51531:CDS | 35.0% | |
| CAACTTGTGATTTAAGGGAT+GGG | + | chr3.4:3252181-3252200 | None:intergenic | 35.0% | |
| CACTAAGGATTAATGGAGAA+AGG | - | chr3.4:3252027-3252046 | MS.gene51531:CDS | 35.0% | |
| CTACAATTGACAAAGCAAAG+AGG | - | chr3.4:3252765-3252784 | MS.gene51531:intron | 35.0% | |
| CTCCAAGTAATATTGTGACA+GGG | - | chr3.4:3252321-3252340 | MS.gene51531:intron | 35.0% | |
| CTCCATTAATCCTTAGTGTT+CGG | + | chr3.4:3252025-3252044 | None:intergenic | 35.0% | |
| CTTCAAGGCAAGTTTGAAAA+TGG | - | chr3.4:3252125-3252144 | MS.gene51531:CDS | 35.0% | |
| GCAAGAAAAGAGTCATCAAA+AGG | - | chr3.4:3252698-3252717 | MS.gene51531:intron | 35.0% | |
| TATTACCCAAATTGACATCG+AGG | + | chr3.4:3251602-3251621 | None:intergenic | 35.0% | |
| TCAACTTGTGATTTAAGGGA+TGG | + | chr3.4:3252182-3252201 | None:intergenic | 35.0% | |
| TCCATTAATCCTTAGTGTTC+GGG | + | chr3.4:3252024-3252043 | None:intergenic | 35.0% | |
| TCTCCAAGTAATATTGTGAC+AGG | - | chr3.4:3252320-3252339 | MS.gene51531:intron | 35.0% | |
| TGAGGTCTAGATTCTACAAA+GGG | + | chr3.4:3252437-3252456 | None:intergenic | 35.0% | |
| TGTCTTAAGAAAACCCACTT+GGG | - | chr3.4:3251508-3251527 | MS.gene51531:CDS | 35.0% | |
| TTCTGTTCCAGAAAATTGTG+AGG | - | chr3.4:3252094-3252113 | MS.gene51531:CDS | 35.0% | |
| TTGAGGTCTAGATTCTACAA+AGG | + | chr3.4:3252438-3252457 | None:intergenic | 35.0% | |
| TTGTCTTAAGAAAACCCACT+TGG | - | chr3.4:3251507-3251526 | MS.gene51531:CDS | 35.0% | |
| TTTCCAAGTCAAAGTCCTAA+GGG | - | chr3.4:3252392-3252411 | MS.gene51531:intron | 35.0% | |
| ! | AACTACTTGGTAGCAACAAA+TGG | - | chr3.4:3252051-3252070 | MS.gene51531:CDS | 35.0% |
| ! | ATTTTCCTTCAATTCTGCCT+TGG | + | chr3.4:3251214-3251233 | None:intergenic | 35.0% |
| ! | CAAAGCAAAGAGGTATAAGA+AGG | - | chr3.4:3252775-3252794 | MS.gene51531:intron | 35.0% |
| ! | CTCAAGTTGTCAAGAGAATA+GGG | - | chr3.4:3252852-3252871 | MS.gene51531:intron | 35.0% |
| ! | TCAAGTTGTCAAGAGAATAG+GGG | - | chr3.4:3252853-3252872 | MS.gene51531:intron | 35.0% |
| ! | TCTCAAGTTGTCAAGAGAAT+AGG | - | chr3.4:3252851-3252870 | MS.gene51531:intron | 35.0% |
| ! | TTTTCCAAGTCAAAGTCCTA+AGG | - | chr3.4:3252391-3252410 | MS.gene51531:intron | 35.0% |
| ! | TTTTCCTTCAATTCTGCCTT+GGG | + | chr3.4:3251213-3251232 | None:intergenic | 35.0% |
| !! | TGCAAGGTTTTATAAAGGAG+AGG | - | chr3.4:3251973-3251992 | MS.gene51531:CDS | 35.0% |
| !! | TGCACTCCTCCATATTTTAA+AGG | - | chr3.4:3251389-3251408 | MS.gene51531:CDS | 35.0% |
| !!! | TTAAGGGATGGGAACTTTTT+TGG | + | chr3.4:3252170-3252189 | None:intergenic | 35.0% |
| AATGGAGAAAGGCAACTACT+TGG | - | chr3.4:3252038-3252057 | MS.gene51531:CDS | 40.0% | |
| ACAAAAAATACGCACCAGGA+AGG | + | chr3.4:3251263-3251282 | None:intergenic | 40.0% | |
| ACAACCAAATCAACCCAAGT+GGG | + | chr3.4:3251524-3251543 | None:intergenic | 40.0% | |
| GAAGGGAATCTTCAAAGAAG+TGG | - | chr3.4:3252817-3252836 | MS.gene51531:intron | 40.0% | |
| GATTCTCCTCGATGTCAATT+TGG | - | chr3.4:3251593-3251612 | MS.gene51531:CDS | 40.0% | |
| GCACCCATATTTGCAACTAA+AGG | + | chr3.4:3252905-3252924 | None:intergenic | 40.0% | |
| GGCAGAATTGAAGGAAAATG+AGG | - | chr3.4:3251215-3251234 | MS.gene51531:CDS | 40.0% | |
| GGTTCTTCTAGTACTCTAGT+TGG | + | chr3.4:3252272-3252291 | None:intergenic | 40.0% | |
| GGTTGGAAAGTTTCATACAC+AGG | + | chr3.4:3251192-3251211 | None:intergenic | 40.0% | |
| GTATGAAACTTTCCAACCCA+AGG | - | chr3.4:3251194-3251213 | MS.gene51531:CDS | 40.0% | |
| TACAACCAAATCAACCCAAG+TGG | + | chr3.4:3251525-3251544 | None:intergenic | 40.0% | |
| TCCCGAACACTAAGGATTAA+TGG | - | chr3.4:3252020-3252039 | MS.gene51531:CDS | 40.0% | |
| TCTTCTAGTACTCTAGTTGG+AGG | + | chr3.4:3252269-3252288 | None:intergenic | 40.0% | |
| TGTTCCAGAAAATTGTGAGG+TGG | - | chr3.4:3252097-3252116 | MS.gene51531:CDS | 40.0% | |
| TTTCCCTTAGGACTTTGACT+TGG | + | chr3.4:3252398-3252417 | None:intergenic | 40.0% | |
| TTTCTTCACATTCACCTTCC+TGG | - | chr3.4:3251246-3251265 | MS.gene51531:CDS | 40.0% | |
| ! | TGAGAGTGTACTCATTCTCA+AGG | - | chr3.4:3251560-3251579 | MS.gene51531:CDS | 40.0% |
| ! | TTCTCCACCTCACAATTTTC+TGG | + | chr3.4:3252104-3252123 | None:intergenic | 40.0% |
| !! | AAAACCCACTTGGGTTGATT+TGG | - | chr3.4:3251517-3251536 | MS.gene51531:CDS | 40.0% |
| !! | GAAGGAATATTGGTTCCCTT+GGG | + | chr3.4:3252242-3252261 | None:intergenic | 40.0% |
| !! | TGAAGGAATATTGGTTCCCT+TGG | + | chr3.4:3252243-3252262 | None:intergenic | 40.0% |
| !! | TGGAGGCTTTGAAGGAATAT+TGG | + | chr3.4:3252252-3252271 | None:intergenic | 40.0% |
| !!! | GAAGGTTTTGTTCTAGAGGT+AGG | + | chr3.4:3251162-3251181 | None:intergenic | 40.0% |
| CTTCTCTCTCATGTTCTGCA+AGG | - | chr3.4:3251957-3251976 | MS.gene51531:CDS | 45.0% | |
| GAGAATGAGTACACTCTCAC+AGG | + | chr3.4:3251559-3251578 | None:intergenic | 45.0% | |
| GGCTGCAAAAGATGCAAAGA+AGG | - | chr3.4:3252733-3252752 | MS.gene51531:intron | 45.0% | |
| GTTGTCAAGAGAATAGGGGA+AGG | - | chr3.4:3252857-3252876 | MS.gene51531:intron | 45.0% | |
| TCATACACAGGATTTGGGGA+AGG | + | chr3.4:3251180-3251199 | None:intergenic | 45.0% | |
| TGTGAGGTGGAGAAACTTCA+AGG | - | chr3.4:3252110-3252129 | MS.gene51531:CDS | 45.0% | |
| ! | ACTCTAGTTGGAGGCTTTGA+AGG | + | chr3.4:3252260-3252279 | None:intergenic | 45.0% |
| !!! | TGGGGAAGGTTTTGTTCTAG+AGG | + | chr3.4:3251166-3251185 | None:intergenic | 45.0% |
| CCAACCCAAGGCAGAATTGA+AGG | - | chr3.4:3251206-3251225 | MS.gene51531:CDS | 50.0% | |
| CCAAGTCCTAGAACACCCAA+GGG | - | chr3.4:3252224-3252243 | MS.gene51531:intron | 50.0% | |
| CCTTCAATTCTGCCTTGGGT+TGG | + | chr3.4:3251209-3251228 | None:intergenic | 50.0% | |
| TTGGTTCCCTTGGGTGTTCT+AGG | + | chr3.4:3252233-3252252 | None:intergenic | 50.0% | |
| GCCAAGTCCTAGAACACCCA+AGG | - | chr3.4:3252223-3252242 | MS.gene51531:intron | 55.0% | |
| TGGGACTCTCCCGAACACTA+AGG | - | chr3.4:3252012-3252031 | MS.gene51531:CDS | 55.0% | |
| !! | CCCTTGGGTGTTCTAGGACT+TGG | + | chr3.4:3252227-3252246 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 3251138 | 3252994 | 3251138 | ID=MS.gene51531 |
| chr3.4 | mRNA | 3251138 | 3252994 | 3251138 | ID=MS.gene51531.t1;Parent=MS.gene51531 |
| chr3.4 | exon | 3252865 | 3252994 | 3252865 | ID=MS.gene51531.t1.exon1;Parent=MS.gene51531.t1 |
| chr3.4 | CDS | 3252865 | 3252994 | 3252865 | ID=cds.MS.gene51531.t1;Parent=MS.gene51531.t1 |
| chr3.4 | exon | 3251138 | 3252153 | 3251138 | ID=MS.gene51531.t1.exon2;Parent=MS.gene51531.t1 |
| chr3.4 | CDS | 3251138 | 3252153 | 3251138 | ID=cds.MS.gene51531.t1;Parent=MS.gene51531.t1 |
| Gene Sequence |
| Protein sequence |
