Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06600.t1 | XP_003602392.1 | 99.4 | 342 | 2 | 0 | 1 | 342 | 1 | 342 | 3.20E-196 | 694.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06600.t1 | Q9XGN1 | 78.2 | 344 | 70 | 3 | 1 | 342 | 1 | 341 | 3.1e-155 | 549.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06600.t1 | B4XH97 | 99.4 | 342 | 2 | 0 | 1 | 342 | 1 | 342 | 2.3e-196 | 694.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057598 | MS.gene06600 | -0.808901 | 2.47E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene52286 | MS.gene06600 | PPI |
| MS.gene06600 | MS.gene72217 | PPI |
| MS.gene51926 | MS.gene06600 | PPI |
| MS.gene06600 | MS.gene024336 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06600.t1 | MTR_3g092840 | 99.415 | 342 | 2 | 0 | 1 | 342 | 1 | 342 | 0.0 | 704 |
| MS.gene06600.t1 | MTR_7g084810 | 59.143 | 350 | 126 | 5 | 3 | 342 | 10 | 352 | 6.53e-149 | 423 |
| MS.gene06600.t1 | MTR_3g092830 | 86.957 | 92 | 12 | 0 | 251 | 342 | 1 | 92 | 2.33e-53 | 171 |
| MS.gene06600.t1 | MTR_2g016160 | 27.568 | 185 | 127 | 4 | 138 | 319 | 112 | 292 | 2.22e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06600.t1 | AT5G24520 | 78.551 | 345 | 67 | 4 | 1 | 342 | 1 | 341 | 0.0 | 556 |
| MS.gene06600.t1 | AT5G24520 | 78.551 | 345 | 67 | 4 | 1 | 342 | 1 | 341 | 0.0 | 556 |
| MS.gene06600.t1 | AT5G24520 | 78.551 | 345 | 67 | 4 | 1 | 342 | 1 | 341 | 0.0 | 556 |
| MS.gene06600.t1 | AT5G24520 | 78.551 | 345 | 67 | 4 | 1 | 342 | 1 | 341 | 0.0 | 556 |
| MS.gene06600.t1 | AT1G12910 | 61.398 | 329 | 118 | 4 | 18 | 342 | 23 | 346 | 9.11e-148 | 420 |
| MS.gene06600.t1 | AT3G26640 | 58.092 | 346 | 134 | 5 | 1 | 342 | 8 | 346 | 1.18e-144 | 412 |
| MS.gene06600.t1 | AT1G29260 | 29.688 | 192 | 128 | 4 | 131 | 319 | 104 | 291 | 8.12e-14 | 71.6 |
Find 111 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATATGCTTCGAACTTCT+TGG | 0.223079 | 3.3:+77493496 | None:intergenic |
| TAGTAATAAAGTTGTGATTT+TGG | 0.231763 | 3.3:-77493593 | MS.gene06600:CDS |
| ATGATGCACAGGCTCTTATT+TGG | 0.239316 | 3.3:-77493462 | MS.gene06600:CDS |
| TTCCAATCAAAGGATGTTAA+AGG | 0.269478 | 3.3:+77493916 | None:intergenic |
| TTGACACTACTTGTACTATC+TGG | 0.291467 | 3.3:-77493858 | MS.gene06600:CDS |
| CTCCTTTAACATCCTTTGAT+TGG | 0.296600 | 3.3:-77493918 | MS.gene06600:CDS |
| AACTACACCGGTGGCGGAAT+TGG | 0.308686 | 3.3:-77493557 | MS.gene06600:CDS |
| GGCTCTTATTTGGGAGTTGC+CGG | 0.327141 | 3.3:-77493452 | MS.gene06600:CDS |
| GGATACCCCTTTGCTTCGTT+TGG | 0.334156 | 3.3:-77493662 | MS.gene06600:CDS |
| ACTTGAAGTTCCAATTCGTT+TGG | 0.338704 | 3.3:+77493882 | None:intergenic |
| AGTTCGAAGCATATTTGTTC+TGG | 0.340652 | 3.3:-77493490 | MS.gene06600:CDS |
| CAAGAAGGATTTGAGGTATA+TGG | 0.353157 | 3.3:-77493632 | MS.gene06600:CDS |
| CCGGTGACTATCTCCGTCTC+TGG | 0.354504 | 3.3:-77494008 | MS.gene06600:CDS |
| TTTGCTTCGGTTTCTGCTGA+TGG | 0.360345 | 3.3:-77493751 | MS.gene06600:CDS |
| CCCCTTTGCTTCGTTTGGCT+TGG | 0.361608 | 3.3:-77493657 | MS.gene06600:CDS |
| GGTTTGAGTGAGAGTGTGTC+AGG | 0.364304 | 3.3:+77494138 | None:intergenic |
| GGTCTGCTGCTCAGCCTGAT+TGG | 0.373267 | 3.3:-77493357 | MS.gene06600:CDS |
| TGATGCACAGGCTCTTATTT+GGG | 0.374972 | 3.3:-77493461 | MS.gene06600:CDS |
| TTTCTGCTGATGGGTCTGTT+AGG | 0.375024 | 3.3:-77493741 | MS.gene06600:CDS |
| GTATGTTACGGAGTTGTTAT+CGG | 0.377404 | 3.3:+77494284 | None:intergenic |
| GAAATTGAGCCCAAACGAAT+TGG | 0.382415 | 3.3:-77493892 | MS.gene06600:CDS |
| CTGGTGTCAATGCGATTGCT+TGG | 0.387077 | 3.3:-77493522 | MS.gene06600:CDS |
| CTTGAAGTTCCAATTCGTTT+GGG | 0.388164 | 3.3:+77493883 | None:intergenic |
| ATGAGTTTGGTGGGTGGGTA+AGG | 0.390168 | 3.3:+77494090 | None:intergenic |
| AGAGGTTTATGATATTGCTT+GGG | 0.401590 | 3.3:-77493788 | MS.gene06600:CDS |
| GACATGGCGTAGAGTGGGTA+TGG | 0.409381 | 3.3:+77494255 | None:intergenic |
| AAGAGGTTTATGATATTGCT+TGG | 0.412325 | 3.3:-77493789 | MS.gene06600:CDS |
| TGTTGTGGGGAATTGGTGTT+GGG | 0.413984 | 3.3:+77494225 | None:intergenic |
| TTGTTGTGGGGAATTGGTGT+TGG | 0.414411 | 3.3:+77494224 | None:intergenic |
| TGGAACATGAGTTTGGTGGG+TGG | 0.416377 | 3.3:+77494084 | None:intergenic |
| GGAATTGGTGTTGGGAGAGA+TGG | 0.421413 | 3.3:+77494233 | None:intergenic |
| GATGCGTTGTTGTGGGGAAT+TGG | 0.430152 | 3.3:+77494218 | None:intergenic |
| TGGGAGTTGCCGGCTGTGGC+TGG | 0.434983 | 3.3:-77493442 | MS.gene06600:CDS |
| GTGTGTCAGGGTTGAAATTG+AGG | 0.439145 | 3.3:+77494151 | None:intergenic |
| GGCGGGGTGGAACATGAGTT+TGG | 0.450604 | 3.3:+77494077 | None:intergenic |
| CCGGCTGTGGCTGGTCCGAA+TGG | 0.451106 | 3.3:-77493433 | MS.gene06600:CDS |
| CTCAATTTCATTCCAATCAA+AGG | 0.452776 | 3.3:+77493906 | None:intergenic |
| TTCTGGTGGGGATGATGCAC+AGG | 0.454070 | 3.3:-77493473 | MS.gene06600:CDS |
| AAACGAAGCAAAGGGGTATC+CGG | 0.454376 | 3.3:+77493664 | None:intergenic |
| AGTTGTTATCGGATCGGAGA+TGG | 0.455221 | 3.3:+77494295 | None:intergenic |
| CCAGCAGAATACATAGTCAT+TGG | 0.462312 | 3.3:+77493403 | None:intergenic |
| TTGCTTCGGTTTCTGCTGAT+GGG | 0.464907 | 3.3:-77493750 | MS.gene06600:CDS |
| GGAACATGAGTTTGGTGGGT+GGG | 0.466962 | 3.3:+77494085 | None:intergenic |
| TGGTGTCAATGCGATTGCTT+GGG | 0.476618 | 3.3:-77493521 | MS.gene06600:CDS |
| GTTAATTGCGCATGATAAAG+AGG | 0.479182 | 3.3:-77493806 | MS.gene06600:CDS |
| CGGCTGTGGCTGGTCCGAAT+GGG | 0.487137 | 3.3:-77493432 | MS.gene06600:CDS |
| GGTAGCGAGGAGGTCGGAGG+AGG | 0.491352 | 3.3:+77494032 | None:intergenic |
| CTTGGAACAAGAAGGATTTG+AGG | 0.491459 | 3.3:-77493639 | MS.gene06600:CDS |
| TCCGACCTCCTCGCTACCTC+CGG | 0.494753 | 3.3:-77494027 | MS.gene06600:CDS |
| TATTTGGGAGTTGCCGGCTG+TGG | 0.495883 | 3.3:-77493446 | MS.gene06600:CDS |
| AAAGCAATAGCAATCCAATC+AGG | 0.495960 | 3.3:+77493343 | None:intergenic |
| GTCATTGGATCAATCCCATT+CGG | 0.499402 | 3.3:+77493418 | None:intergenic |
| GTTGTTATCGGATCGGAGAT+GGG | 0.506009 | 3.3:+77494296 | None:intergenic |
| CCAACGGCGATGCGTTGTTG+TGG | 0.506615 | 3.3:+77494210 | None:intergenic |
| CAACGGCGATGCGTTGTTGT+GGG | 0.514389 | 3.3:+77494211 | None:intergenic |
| TGACACTACTTGTACTATCT+GGG | 0.515740 | 3.3:-77493857 | MS.gene06600:CDS |
| AGCAAAGGGGTATCCGGCTG+TGG | 0.516356 | 3.3:+77493670 | None:intergenic |
| TCGAAGGAGAGTGAAGGTTG+AGG | 0.520984 | 3.3:+77494117 | None:intergenic |
| GAAGCATATTTGTTCTGGTG+GGG | 0.522421 | 3.3:-77493485 | MS.gene06600:CDS |
| TCCAAGCCAAACGAAGCAAA+GGG | 0.522555 | 3.3:+77493656 | None:intergenic |
| AATTCCGCCACCGGTGTAGT+TGG | 0.525035 | 3.3:+77493559 | None:intergenic |
| TCGAAGCATATTTGTTCTGG+TGG | 0.528006 | 3.3:-77493487 | MS.gene06600:CDS |
| TCGTTTGGCTTGGAACAAGA+AGG | 0.528809 | 3.3:-77493647 | MS.gene06600:CDS |
| CGAAGCATATTTGTTCTGGT+GGG | 0.533772 | 3.3:-77493486 | MS.gene06600:CDS |
| CCATTCGGACCAGCCACAGC+CGG | 0.534014 | 3.3:+77493433 | None:intergenic |
| CGGTGACTATCTCCGTCTCT+GGG | 0.535569 | 3.3:-77494007 | MS.gene06600:CDS |
| GGTTTATGATATTGCTTGGG+GGG | 0.537143 | 3.3:-77493785 | MS.gene06600:CDS |
| TGTCTCTCCAATTCCGCCAC+CGG | 0.541299 | 3.3:+77493550 | None:intergenic |
| ACATGGCGTAGAGTGGGTAT+GGG | 0.541875 | 3.3:+77494256 | None:intergenic |
| TTCCAAGCCAAACGAAGCAA+AGG | 0.542040 | 3.3:+77493655 | None:intergenic |
| ATCACCAACTACACCGGTGG+CGG | 0.543805 | 3.3:-77493563 | MS.gene06600:CDS |
| TGGAGAGAAGAATGTGTGGC+GGG | 0.549225 | 3.3:+77494060 | None:intergenic |
| GAAAAGAGAAAGAGCTTCAA+CGG | 0.553285 | 3.3:+77493969 | None:intergenic |
| CCAATGACTATGTATTCTGC+TGG | 0.558064 | 3.3:-77493403 | MS.gene06600:CDS |
| GTATGGGGAATCGTATGTTA+CGG | 0.558553 | 3.3:+77494272 | None:intergenic |
| GGAGGTAGCGAGGAGGTCGG+AGG | 0.571097 | 3.3:+77494029 | None:intergenic |
| CATGGCGTAGAGTGGGTATG+GGG | 0.571219 | 3.3:+77494257 | None:intergenic |
| TAAAGGAGCACAAAACTCAC+TGG | 0.571374 | 3.3:+77493933 | None:intergenic |
| GGGTGGAACATGAGTTTGGT+GGG | 0.574676 | 3.3:+77494081 | None:intergenic |
| CCACAACAACGCATCGCCGT+TGG | 0.579052 | 3.3:-77494210 | MS.gene06600:CDS |
| CCAGAGACGGAGATAGTCAC+CGG | 0.580223 | 3.3:+77494008 | None:intergenic |
| GTTTGAGTGAGAGTGTGTCA+GGG | 0.584476 | 3.3:+77494139 | None:intergenic |
| GATAGTCACCGGAGGTAGCG+AGG | 0.590791 | 3.3:+77494019 | None:intergenic |
| AATCTATGAGAGTCCACAGC+CGG | 0.591354 | 3.3:-77493683 | MS.gene06600:CDS |
| GTGAGATTAATCAGCTTCAG+TGG | 0.591532 | 3.3:-77493378 | MS.gene06600:CDS |
| AGATGGACATGGCGTAGAGT+GGG | 0.592865 | 3.3:+77494250 | None:intergenic |
| GAGATGGACATGGCGTAGAG+TGG | 0.596359 | 3.3:+77494249 | None:intergenic |
| GGATGATCGAAGGAGAGTGA+AGG | 0.596401 | 3.3:+77494111 | None:intergenic |
| GAGAAGAATGTGTGGCGGGG+TGG | 0.596862 | 3.3:+77494064 | None:intergenic |
| AACGGCGATGCGTTGTTGTG+GGG | 0.605737 | 3.3:+77494212 | None:intergenic |
| ACTATCTGGGACATTGAAAG+AGG | 0.607797 | 3.3:-77493844 | MS.gene06600:CDS |
| TTTCGCGAACTTCCCAGAGA+CGG | 0.616480 | 3.3:+77493995 | None:intergenic |
| GAGGTTTATGATATTGCTTG+GGG | 0.618826 | 3.3:-77493787 | MS.gene06600:CDS |
| TTACGGAGTTGTTATCGGAT+CGG | 0.627468 | 3.3:+77494289 | None:intergenic |
| TATTAGATCACCAACTACAC+CGG | 0.632803 | 3.3:-77493569 | MS.gene06600:CDS |
| CTGGAGAGAAGAATGTGTGG+CGG | 0.635131 | 3.3:+77494059 | None:intergenic |
| TCGGAGATGGGATTCTTGTG+TGG | 0.641501 | 3.3:+77494308 | None:intergenic |
| GAATTGGAGAGACATCGTGC+TGG | 0.649925 | 3.3:-77493541 | MS.gene06600:CDS |
| GGGGTGGAACATGAGTTTGG+TGG | 0.650470 | 3.3:+77494080 | None:intergenic |
| GGAGAGAAGAATGTGTGGCG+GGG | 0.652075 | 3.3:+77494061 | None:intergenic |
| GGGTGGGTAAGGATGATCGA+AGG | 0.652213 | 3.3:+77494101 | None:intergenic |
| ACCGGAGGTAGCGAGGAGGT+CGG | 0.660144 | 3.3:+77494026 | None:intergenic |
| TTCTTCGATGAAGCTACCAA+CGG | 0.661547 | 3.3:+77494194 | None:intergenic |
| TGAAATTGAGGATATCGATG+CGG | 0.685931 | 3.3:+77494163 | None:intergenic |
| TAGATCACCAACTACACCGG+TGG | 0.690300 | 3.3:-77493566 | MS.gene06600:CDS |
| TTTCTGGAGAGAAGAATGTG+TGG | 0.702519 | 3.3:+77494056 | None:intergenic |
| CCAAGCCAAACGAAGCAAAG+GGG | 0.704032 | 3.3:+77493657 | None:intergenic |
| GAGACGGAGATAGTCACCGG+AGG | 0.711536 | 3.3:+77494011 | None:intergenic |
| AGGTTTATGATATTGCTTGG+GGG | 0.720364 | 3.3:-77493786 | MS.gene06600:CDS |
| AGTCACCGGAGGTAGCGAGG+AGG | 0.732592 | 3.3:+77494022 | None:intergenic |
| GGTGTTGGGAGAGATGGACA+TGG | 0.772892 | 3.3:+77494239 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAGTAATAAAGTTGTGATTT+TGG | - | chr3.3:77494037-77494056 | MS.gene06600:CDS | 20.0% |
| !!! | TGTTAGGATTTTTGATTTAA+GGG | - | chr3.3:77493905-77493924 | MS.gene06600:CDS | 20.0% |
| !! | TAATAAAATGCAGCTTTTGA+GGG | - | chr3.3:77494313-77494332 | MS.gene06600:CDS | 25.0% |
| !!! | CTGTTAGGATTTTTGATTTA+AGG | - | chr3.3:77493904-77493923 | MS.gene06600:CDS | 25.0% |
| AAGAGGTTTATGATATTGCT+TGG | - | chr3.3:77493841-77493860 | MS.gene06600:CDS | 30.0% | |
| AGAGGTTTATGATATTGCTT+GGG | - | chr3.3:77493842-77493861 | MS.gene06600:CDS | 30.0% | |
| CTCAATTTCATTCCAATCAA+AGG | + | chr3.3:77493727-77493746 | None:intergenic | 30.0% | |
| TTCCAATCAAAGGATGTTAA+AGG | + | chr3.3:77493717-77493736 | None:intergenic | 30.0% | |
| ! | CTAATAAAATGCAGCTTTTG+AGG | - | chr3.3:77494312-77494331 | MS.gene06600:CDS | 30.0% |
| AAAGCAATAGCAATCCAATC+AGG | + | chr3.3:77494290-77494309 | None:intergenic | 35.0% | |
| ACTTGAAGTTCCAATTCGTT+TGG | + | chr3.3:77493751-77493770 | None:intergenic | 35.0% | |
| AGGTTTATGATATTGCTTGG+GGG | - | chr3.3:77493844-77493863 | MS.gene06600:CDS | 35.0% | |
| AGTTCGAAGCATATTTGTTC+TGG | - | chr3.3:77494140-77494159 | MS.gene06600:CDS | 35.0% | |
| CAAATATGCTTCGAACTTCT+TGG | + | chr3.3:77494137-77494156 | None:intergenic | 35.0% | |
| CTCCTTTAACATCCTTTGAT+TGG | - | chr3.3:77493712-77493731 | MS.gene06600:CDS | 35.0% | |
| CTTGAAGTTCCAATTCGTTT+GGG | + | chr3.3:77493750-77493769 | None:intergenic | 35.0% | |
| GAAAAGAGAAAGAGCTTCAA+CGG | + | chr3.3:77493664-77493683 | None:intergenic | 35.0% | |
| GAGGTTTATGATATTGCTTG+GGG | - | chr3.3:77493843-77493862 | MS.gene06600:CDS | 35.0% | |
| GTATGTTACGGAGTTGTTAT+CGG | + | chr3.3:77493349-77493368 | None:intergenic | 35.0% | |
| GTTAATTGCGCATGATAAAG+AGG | - | chr3.3:77493824-77493843 | MS.gene06600:CDS | 35.0% | |
| TATTAGATCACCAACTACAC+CGG | - | chr3.3:77494061-77494080 | MS.gene06600:CDS | 35.0% | |
| TGAAATTGAGGATATCGATG+CGG | + | chr3.3:77493470-77493489 | None:intergenic | 35.0% | |
| TGACACTACTTGTACTATCT+GGG | - | chr3.3:77493773-77493792 | MS.gene06600:CDS | 35.0% | |
| TTGACACTACTTGTACTATC+TGG | - | chr3.3:77493772-77493791 | MS.gene06600:CDS | 35.0% | |
| ! | CAAGAAGGATTTGAGGTATA+TGG | - | chr3.3:77493998-77494017 | MS.gene06600:CDS | 35.0% |
| ! | GTATATGGCGACAATTTTGA+TGG | - | chr3.3:77494013-77494032 | MS.gene06600:CDS | 35.0% |
| ATGATGCACAGGCTCTTATT+TGG | - | chr3.3:77494168-77494187 | MS.gene06600:CDS | 40.0% | |
| CCAATGACTATGTATTCTGC+TGG | - | chr3.3:77494227-77494246 | MS.gene06600:CDS | 40.0% | |
| CCAGCAGAATACATAGTCAT+TGG | + | chr3.3:77494230-77494249 | None:intergenic | 40.0% | |
| CGAAGCATATTTGTTCTGGT+GGG | - | chr3.3:77494144-77494163 | MS.gene06600:CDS | 40.0% | |
| CTTGGAACAAGAAGGATTTG+AGG | - | chr3.3:77493991-77494010 | MS.gene06600:CDS | 40.0% | |
| GAAATTGAGCCCAAACGAAT+TGG | - | chr3.3:77493738-77493757 | MS.gene06600:CDS | 40.0% | |
| GAAGCATATTTGTTCTGGTG+GGG | - | chr3.3:77494145-77494164 | MS.gene06600:CDS | 40.0% | |
| GGTTTATGATATTGCTTGGG+GGG | - | chr3.3:77493845-77493864 | MS.gene06600:CDS | 40.0% | |
| GTATGGGGAATCGTATGTTA+CGG | + | chr3.3:77493361-77493380 | None:intergenic | 40.0% | |
| GTCATTGGATCAATCCCATT+CGG | + | chr3.3:77494215-77494234 | None:intergenic | 40.0% | |
| GTGAGATTAATCAGCTTCAG+TGG | - | chr3.3:77494252-77494271 | MS.gene06600:CDS | 40.0% | |
| TCGAAGCATATTTGTTCTGG+TGG | - | chr3.3:77494143-77494162 | MS.gene06600:CDS | 40.0% | |
| TTACGGAGTTGTTATCGGAT+CGG | + | chr3.3:77493344-77493363 | None:intergenic | 40.0% | |
| TTCTTCGATGAAGCTACCAA+CGG | + | chr3.3:77493439-77493458 | None:intergenic | 40.0% | |
| ! | ACTATCTGGGACATTGAAAG+AGG | - | chr3.3:77493786-77493805 | MS.gene06600:CDS | 40.0% |
| ! | GGAATCAAGGGTTTTTGCTT+CGG | - | chr3.3:77493866-77493885 | MS.gene06600:CDS | 40.0% |
| ! | TAAAGGAGCACAAAACTCAC+TGG | + | chr3.3:77493700-77493719 | None:intergenic | 40.0% |
| ! | TGATGCACAGGCTCTTATTT+GGG | - | chr3.3:77494169-77494188 | MS.gene06600:CDS | 40.0% |
| ! | TTTCTGGAGAGAAGAATGTG+TGG | + | chr3.3:77493577-77493596 | None:intergenic | 40.0% |
| AATCTATGAGAGTCCACAGC+CGG | - | chr3.3:77493947-77493966 | MS.gene06600:CDS | 45.0% | |
| AGTTGTTATCGGATCGGAGA+TGG | + | chr3.3:77493338-77493357 | None:intergenic | 45.0% | |
| ATATTGCTTGGGGGGAATCA+AGG | - | chr3.3:77493853-77493872 | MS.gene06600:CDS | 45.0% | |
| GTGTGTCAGGGTTGAAATTG+AGG | + | chr3.3:77493482-77493501 | None:intergenic | 45.0% | |
| GTTGTTATCGGATCGGAGAT+GGG | + | chr3.3:77493337-77493356 | None:intergenic | 45.0% | |
| TATTGCTTGGGGGGAATCAA+GGG | - | chr3.3:77493854-77493873 | MS.gene06600:CDS | 45.0% | |
| TCCAAGCCAAACGAAGCAAA+GGG | + | chr3.3:77493977-77493996 | None:intergenic | 45.0% | |
| TTCCAAGCCAAACGAAGCAA+AGG | + | chr3.3:77493978-77493997 | None:intergenic | 45.0% | |
| TTGCTTCGGTTTCTGCTGAT+GGG | - | chr3.3:77493880-77493899 | MS.gene06600:CDS | 45.0% | |
| TTGTTGTGGGGAATTGGTGT+TGG | + | chr3.3:77493409-77493428 | None:intergenic | 45.0% | |
| TTTGCTTCGGTTTCTGCTGA+TGG | - | chr3.3:77493879-77493898 | MS.gene06600:CDS | 45.0% | |
| ! | GTTTGAGTGAGAGTGTGTCA+GGG | + | chr3.3:77493494-77493513 | None:intergenic | 45.0% |
| ! | TGGTGTCAATGCGATTGCTT+GGG | - | chr3.3:77494109-77494128 | MS.gene06600:CDS | 45.0% |
| ! | TGTTGTGGGGAATTGGTGTT+GGG | + | chr3.3:77493408-77493427 | None:intergenic | 45.0% |
| ! | TTTCTGCTGATGGGTCTGTT+AGG | - | chr3.3:77493889-77493908 | MS.gene06600:CDS | 45.0% |
| !! | AAACGAAGCAAAGGGGTATC+CGG | + | chr3.3:77493969-77493988 | None:intergenic | 45.0% |
| !! | TCGTTTGGCTTGGAACAAGA+AGG | - | chr3.3:77493983-77494002 | MS.gene06600:CDS | 45.0% |
| ACATGGCGTAGAGTGGGTAT+GGG | + | chr3.3:77493377-77493396 | None:intergenic | 50.0% | |
| AGATGGACATGGCGTAGAGT+GGG | + | chr3.3:77493383-77493402 | None:intergenic | 50.0% | |
| CCAAGCCAAACGAAGCAAAG+GGG | + | chr3.3:77493976-77493995 | None:intergenic | 50.0% | |
| CTGGAGAGAAGAATGTGTGG+CGG | + | chr3.3:77493574-77493593 | None:intergenic | 50.0% | |
| GAATTGGAGAGACATCGTGC+TGG | - | chr3.3:77494089-77494108 | MS.gene06600:CDS | 50.0% | |
| GATGCGTTGTTGTGGGGAAT+TGG | + | chr3.3:77493415-77493434 | None:intergenic | 50.0% | |
| GGATACCCCTTTGCTTCGTT+TGG | - | chr3.3:77493968-77493987 | MS.gene06600:CDS | 50.0% | |
| GGATGATCGAAGGAGAGTGA+AGG | + | chr3.3:77493522-77493541 | None:intergenic | 50.0% | |
| GGGTGGAACATGAGTTTGGT+GGG | + | chr3.3:77493552-77493571 | None:intergenic | 50.0% | |
| TAGATCACCAACTACACCGG+TGG | - | chr3.3:77494064-77494083 | MS.gene06600:CDS | 50.0% | |
| TCGAAGGAGAGTGAAGGTTG+AGG | + | chr3.3:77493516-77493535 | None:intergenic | 50.0% | |
| TCGGAGATGGGATTCTTGTG+TGG | + | chr3.3:77493325-77493344 | None:intergenic | 50.0% | |
| TGGAGAGAAGAATGTGTGGC+GGG | + | chr3.3:77493573-77493592 | None:intergenic | 50.0% | |
| TTTCGCGAACTTCCCAGAGA+CGG | + | chr3.3:77493638-77493657 | None:intergenic | 50.0% | |
| ! | ATGAGTTTGGTGGGTGGGTA+AGG | + | chr3.3:77493543-77493562 | None:intergenic | 50.0% |
| ! | CTGGTGTCAATGCGATTGCT+TGG | - | chr3.3:77494108-77494127 | MS.gene06600:CDS | 50.0% |
| ! | GGAACATGAGTTTGGTGGGT+GGG | + | chr3.3:77493548-77493567 | None:intergenic | 50.0% |
| ! | GGCTCTTATTTGGGAGTTGC+CGG | - | chr3.3:77494178-77494197 | MS.gene06600:CDS | 50.0% |
| ! | GGTTTGAGTGAGAGTGTGTC+AGG | + | chr3.3:77493495-77493514 | None:intergenic | 50.0% |
| ! | TGGAACATGAGTTTGGTGGG+TGG | + | chr3.3:77493549-77493568 | None:intergenic | 50.0% |
| !! | GGAATTGGTGTTGGGAGAGA+TGG | + | chr3.3:77493400-77493419 | None:intergenic | 50.0% |
| AACGGCGATGCGTTGTTGTG+GGG | + | chr3.3:77493421-77493440 | None:intergenic | 55.0% | |
| AATTCCGCCACCGGTGTAGT+TGG | + | chr3.3:77494074-77494093 | None:intergenic | 55.0% | |
| ATCACCAACTACACCGGTGG+CGG | - | chr3.3:77494067-77494086 | MS.gene06600:CDS | 55.0% | |
| CAACGGCGATGCGTTGTTGT+GGG | + | chr3.3:77493422-77493441 | None:intergenic | 55.0% | |
| CATGGCGTAGAGTGGGTATG+GGG | + | chr3.3:77493376-77493395 | None:intergenic | 55.0% | |
| CCAGAGACGGAGATAGTCAC+CGG | + | chr3.3:77493625-77493644 | None:intergenic | 55.0% | |
| CCCCTTTGCTTCGTTTGGCT+TGG | - | chr3.3:77493973-77493992 | MS.gene06600:CDS | 55.0% | |
| CGGTGACTATCTCCGTCTCT+GGG | - | chr3.3:77493623-77493642 | MS.gene06600:CDS | 55.0% | |
| GACATGGCGTAGAGTGGGTA+TGG | + | chr3.3:77493378-77493397 | None:intergenic | 55.0% | |
| GAGATGGACATGGCGTAGAG+TGG | + | chr3.3:77493384-77493403 | None:intergenic | 55.0% | |
| GGAGAGAAGAATGTGTGGCG+GGG | + | chr3.3:77493572-77493591 | None:intergenic | 55.0% | |
| GGGGTGGAACATGAGTTTGG+TGG | + | chr3.3:77493553-77493572 | None:intergenic | 55.0% | |
| GGGTGGGTAAGGATGATCGA+AGG | + | chr3.3:77493532-77493551 | None:intergenic | 55.0% | |
| TGTCTCTCCAATTCCGCCAC+CGG | + | chr3.3:77494083-77494102 | None:intergenic | 55.0% | |
| TTCTGGTGGGGATGATGCAC+AGG | - | chr3.3:77494157-77494176 | MS.gene06600:CDS | 55.0% | |
| ! | GGTGTTGGGAGAGATGGACA+TGG | + | chr3.3:77493394-77493413 | None:intergenic | 55.0% |
| ! | TATTTGGGAGTTGCCGGCTG+TGG | - | chr3.3:77494184-77494203 | MS.gene06600:CDS | 55.0% |
| !! | AACTACACCGGTGGCGGAAT+TGG | - | chr3.3:77494073-77494092 | MS.gene06600:CDS | 55.0% |
| CCAACGGCGATGCGTTGTTG+TGG | + | chr3.3:77493423-77493442 | None:intergenic | 60.0% | |
| CCACAACAACGCATCGCCGT+TGG | - | chr3.3:77493420-77493439 | MS.gene06600:CDS | 60.0% | |
| CCGGTGACTATCTCCGTCTC+TGG | - | chr3.3:77493622-77493641 | MS.gene06600:CDS | 60.0% | |
| GAGACGGAGATAGTCACCGG+AGG | + | chr3.3:77493622-77493641 | None:intergenic | 60.0% | |
| GATAGTCACCGGAGGTAGCG+AGG | + | chr3.3:77493614-77493633 | None:intergenic | 60.0% | |
| GGCGGGGTGGAACATGAGTT+TGG | + | chr3.3:77493556-77493575 | None:intergenic | 60.0% | |
| GGTCTGCTGCTCAGCCTGAT+TGG | - | chr3.3:77494273-77494292 | MS.gene06600:CDS | 60.0% | |
| ! | GAGAAGAATGTGTGGCGGGG+TGG | + | chr3.3:77493569-77493588 | None:intergenic | 60.0% |
| ! | GGAGGTCGGAGGAGGTTTTC+TGG | + | chr3.3:77493593-77493612 | None:intergenic | 60.0% |
| !! | AGCAAAGGGGTATCCGGCTG+TGG | + | chr3.3:77493963-77493982 | None:intergenic | 60.0% |
| ACCGGAGGTAGCGAGGAGGT+CGG | + | chr3.3:77493607-77493626 | None:intergenic | 65.0% | |
| AGTCACCGGAGGTAGCGAGG+AGG | + | chr3.3:77493611-77493630 | None:intergenic | 65.0% | |
| CCATTCGGACCAGCCACAGC+CGG | + | chr3.3:77494200-77494219 | None:intergenic | 65.0% | |
| TCCGACCTCCTCGCTACCTC+CGG | - | chr3.3:77493603-77493622 | MS.gene06600:CDS | 65.0% | |
| ! | CGGCTGTGGCTGGTCCGAAT+GGG | - | chr3.3:77494198-77494217 | MS.gene06600:CDS | 65.0% |
| GGAGGTAGCGAGGAGGTCGG+AGG | + | chr3.3:77493604-77493623 | None:intergenic | 70.0% | |
| GGTAGCGAGGAGGTCGGAGG+AGG | + | chr3.3:77493601-77493620 | None:intergenic | 70.0% | |
| ! | CCGGCTGTGGCTGGTCCGAA+TGG | - | chr3.3:77494197-77494216 | MS.gene06600:CDS | 70.0% |
| ! | TGGGAGTTGCCGGCTGTGGC+TGG | - | chr3.3:77494188-77494207 | MS.gene06600:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 77493312 | 77494340 | 77493312 | ID=MS.gene06600 |
| chr3.3 | mRNA | 77493312 | 77494340 | 77493312 | ID=MS.gene06600.t1;Parent=MS.gene06600 |
| chr3.3 | exon | 77493312 | 77494340 | 77493312 | ID=MS.gene06600.t1.exon1;Parent=MS.gene06600.t1 |
| chr3.3 | CDS | 77493312 | 77494340 | 77493312 | ID=cds.MS.gene06600.t1;Parent=MS.gene06600.t1 |
| Gene Sequence |
| Protein sequence |
