Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52098.t1 | XP_013456514.1 | 95.3 | 759 | 35 | 1 | 2 | 759 | 16 | 774 | 0.00E+00 | 1431.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52098.t1 | Q9C6C3 | 63.0 | 778 | 252 | 11 | 2 | 759 | 15 | 776 | 5.1e-267 | 921.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52098.t1 | A0A072UXE8 | 95.3 | 759 | 35 | 1 | 2 | 759 | 16 | 774 | 0.0e+00 | 1431.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene52098 | MS.gene003381 | PPI |
MS.gene52098 | MS.gene031837 | PPI |
MS.gene52098 | MS.gene28931 | PPI |
MS.gene52098 | MS.gene052299 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52098.t1 | MTR_4g074170 | 96.706 | 759 | 24 | 1 | 2 | 759 | 16 | 774 | 0.0 | 1526 |
MS.gene52098.t1 | MTR_7g020860 | 46.782 | 808 | 363 | 11 | 2 | 745 | 14 | 818 | 0.0 | 697 |
MS.gene52098.t1 | MTR_8g100100 | 44.780 | 795 | 380 | 11 | 2 | 754 | 14 | 791 | 0.0 | 652 |
MS.gene52098.t1 | MTR_8g100100 | 44.444 | 801 | 380 | 12 | 2 | 754 | 14 | 797 | 0.0 | 645 |
MS.gene52098.t1 | MTR_3g098680 | 44.515 | 784 | 381 | 9 | 2 | 742 | 14 | 786 | 0.0 | 628 |
MS.gene52098.t1 | MTR_7g020860 | 50.482 | 622 | 265 | 8 | 2 | 582 | 14 | 633 | 0.0 | 612 |
MS.gene52098.t1 | MTR_2g080950 | 43.704 | 135 | 54 | 4 | 469 | 600 | 18 | 133 | 1.38e-24 | 108 |
MS.gene52098.t1 | MTR_8g464390 | 42.222 | 135 | 56 | 4 | 469 | 600 | 18 | 133 | 3.06e-23 | 104 |
MS.gene52098.t1 | MTR_6g080710 | 41.985 | 131 | 55 | 4 | 467 | 593 | 16 | 129 | 7.66e-23 | 99.4 |
MS.gene52098.t1 | MTR_8g038400 | 36.923 | 130 | 69 | 5 | 466 | 594 | 20 | 137 | 3.17e-17 | 84.7 |
MS.gene52098.t1 | MTR_8g088320 | 38.393 | 112 | 51 | 4 | 476 | 583 | 21 | 118 | 1.50e-16 | 82.0 |
MS.gene52098.t1 | MTR_2g030230 | 37.500 | 112 | 52 | 4 | 476 | 583 | 30 | 127 | 9.37e-16 | 79.7 |
MS.gene52098.t1 | MTR_1g069000 | 46.053 | 76 | 39 | 1 | 470 | 545 | 10 | 83 | 7.67e-15 | 78.2 |
MS.gene52098.t1 | MTR_3g017500 | 36.567 | 134 | 66 | 5 | 466 | 595 | 24 | 142 | 9.79e-15 | 77.0 |
MS.gene52098.t1 | MTR_3g017500 | 36.567 | 134 | 66 | 5 | 466 | 595 | 54 | 172 | 1.49e-14 | 76.6 |
MS.gene52098.t1 | MTR_8g067080 | 52.308 | 65 | 29 | 1 | 476 | 540 | 22 | 84 | 1.55e-14 | 77.0 |
MS.gene52098.t1 | MTR_8g471110 | 52.308 | 65 | 29 | 1 | 476 | 540 | 22 | 84 | 1.55e-14 | 77.0 |
MS.gene52098.t1 | MTR_8g067080 | 52.308 | 65 | 29 | 1 | 476 | 540 | 22 | 84 | 1.65e-14 | 76.6 |
MS.gene52098.t1 | MTR_8g067090 | 36.290 | 124 | 69 | 5 | 476 | 599 | 22 | 135 | 5.91e-14 | 75.1 |
MS.gene52098.t1 | MTR_8g471120 | 36.290 | 124 | 69 | 5 | 476 | 599 | 22 | 135 | 5.91e-14 | 75.1 |
MS.gene52098.t1 | MTR_7g099830 | 54.717 | 53 | 24 | 0 | 470 | 522 | 10 | 62 | 2.27e-13 | 73.6 |
MS.gene52098.t1 | MTR_2g080950 | 40.594 | 101 | 41 | 3 | 500 | 600 | 1 | 82 | 7.09e-13 | 71.6 |
MS.gene52098.t1 | MTR_8g464390 | 38.614 | 101 | 43 | 3 | 500 | 600 | 1 | 82 | 1.34e-11 | 67.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52098.t1 | AT1G60860 | 64.010 | 778 | 244 | 10 | 2 | 759 | 15 | 776 | 0.0 | 989 |
MS.gene52098.t1 | AT1G10870 | 63.449 | 777 | 247 | 11 | 2 | 758 | 15 | 774 | 0.0 | 974 |
MS.gene52098.t1 | AT1G10870 | 63.124 | 781 | 248 | 10 | 2 | 758 | 15 | 779 | 0.0 | 974 |
MS.gene52098.t1 | AT1G60860 | 62.555 | 681 | 219 | 10 | 99 | 759 | 1 | 665 | 0.0 | 839 |
MS.gene52098.t1 | AT1G60860 | 60.420 | 619 | 209 | 10 | 161 | 759 | 3 | 605 | 0.0 | 735 |
MS.gene52098.t1 | AT5G13300 | 46.979 | 811 | 365 | 12 | 2 | 755 | 14 | 816 | 0.0 | 705 |
MS.gene52098.t1 | AT5G61980 | 44.861 | 827 | 374 | 14 | 2 | 759 | 14 | 827 | 0.0 | 674 |
MS.gene52098.t1 | AT5G54310 | 42.647 | 136 | 57 | 3 | 469 | 601 | 18 | 135 | 1.04e-23 | 105 |
MS.gene52098.t1 | AT3G17660 | 42.241 | 116 | 49 | 2 | 474 | 589 | 26 | 123 | 1.77e-22 | 95.9 |
MS.gene52098.t1 | AT3G17660 | 43.966 | 116 | 47 | 3 | 474 | 589 | 26 | 123 | 2.87e-22 | 96.7 |
MS.gene52098.t1 | AT3G17660 | 42.241 | 116 | 49 | 2 | 474 | 589 | 26 | 123 | 5.13e-22 | 96.3 |
MS.gene52098.t1 | AT3G07940 | 43.243 | 111 | 51 | 5 | 474 | 583 | 57 | 156 | 8.46e-18 | 84.7 |
MS.gene52098.t1 | AT3G07940 | 43.243 | 111 | 51 | 5 | 474 | 583 | 57 | 156 | 2.95e-17 | 85.1 |
MS.gene52098.t1 | AT4G05330 | 39.640 | 111 | 55 | 3 | 474 | 583 | 25 | 124 | 2.51e-16 | 81.6 |
MS.gene52098.t1 | AT4G05330 | 39.640 | 111 | 55 | 3 | 474 | 583 | 25 | 124 | 2.51e-16 | 81.6 |
MS.gene52098.t1 | AT4G21160 | 38.532 | 109 | 55 | 3 | 476 | 583 | 27 | 124 | 4.41e-16 | 80.9 |
MS.gene52098.t1 | AT4G21160 | 38.532 | 109 | 55 | 3 | 476 | 583 | 27 | 124 | 4.41e-16 | 80.9 |
MS.gene52098.t1 | AT4G21160 | 38.532 | 109 | 55 | 3 | 476 | 583 | 27 | 124 | 4.41e-16 | 80.9 |
MS.gene52098.t1 | AT4G21160 | 38.532 | 109 | 55 | 3 | 476 | 583 | 27 | 124 | 4.41e-16 | 80.9 |
MS.gene52098.t1 | AT3G17660 | 37.069 | 116 | 45 | 3 | 474 | 589 | 26 | 113 | 4.05e-15 | 75.9 |
MS.gene52098.t1 | AT2G35210 | 34.286 | 175 | 100 | 6 | 465 | 638 | 11 | 171 | 4.83e-15 | 78.2 |
MS.gene52098.t1 | AT2G35210 | 34.286 | 175 | 100 | 6 | 465 | 638 | 11 | 171 | 6.29e-15 | 77.8 |
MS.gene52098.t1 | AT4G17890 | 54.688 | 64 | 27 | 1 | 476 | 539 | 25 | 86 | 6.27e-14 | 74.7 |
MS.gene52098.t1 | AT2G37550 | 44.156 | 77 | 41 | 1 | 469 | 545 | 9 | 83 | 6.40e-14 | 75.5 |
MS.gene52098.t1 | AT2G37550 | 44.156 | 77 | 41 | 1 | 469 | 545 | 9 | 83 | 6.40e-14 | 75.5 |
MS.gene52098.t1 | AT4G17890 | 54.688 | 64 | 27 | 1 | 476 | 539 | 25 | 86 | 7.07e-14 | 74.7 |
MS.gene52098.t1 | AT5G46750 | 51.429 | 70 | 32 | 1 | 470 | 539 | 16 | 83 | 1.26e-13 | 73.9 |
MS.gene52098.t1 | AT3G53710 | 44.000 | 75 | 40 | 1 | 469 | 543 | 9 | 81 | 1.95e-13 | 73.9 |
MS.gene52098.t1 | AT3G53710 | 44.000 | 75 | 40 | 1 | 469 | 543 | 9 | 81 | 1.95e-13 | 73.9 |
MS.gene52098.t1 | AT3G53710 | 44.000 | 75 | 40 | 1 | 469 | 543 | 9 | 81 | 1.95e-13 | 73.9 |
MS.gene52098.t1 | AT2G03430 | 40.230 | 87 | 52 | 0 | 667 | 753 | 83 | 169 | 1.53e-11 | 65.5 |
Find 158 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTCACTAAATGAGGATATTT+TGG | 0.124193 | 4.1:-29723366 | MS.gene52098:CDS |
ATACTTATTGTAATTCTATT+TGG | 0.131807 | 4.1:-29721784 | MS.gene52098:CDS |
GGCATCCATTATTGCACTTA+TGG | 0.180506 | 4.1:+29726755 | None:intergenic |
ATCCTCTGCATCCATCTTTA+TGG | 0.222480 | 4.1:+29723313 | None:intergenic |
TAATTCTGATAGTACATTAA+TGG | 0.243026 | 4.1:-29720393 | MS.gene52098:CDS |
TTGGAGTTATTCAATAATTT+AGG | 0.249690 | 4.1:-29721809 | MS.gene52098:CDS |
GATTCCGTTCAAGGCATAAT+AGG | 0.273907 | 4.1:-29723394 | MS.gene52098:CDS |
GCTGATGGCTCCCGTCCTTT+AGG | 0.282815 | 4.1:-29723858 | MS.gene52098:CDS |
TCTTCATATTTCGTGTTTAT+CGG | 0.282872 | 4.1:+29720536 | None:intergenic |
GGTTTGGGAACCTACCATTT+TGG | 0.288939 | 4.1:-29721828 | MS.gene52098:CDS |
TGTTTATATCAGCACCAAAT+TGG | 0.300897 | 4.1:+29720357 | None:intergenic |
AGAAACAGCTGATGAGTTAA+AGG | 0.304443 | 4.1:-29730805 | MS.gene52098:CDS |
TACTTATTGTAATTCTATTT+GGG | 0.314969 | 4.1:-29721783 | MS.gene52098:CDS |
GCTGATTCATTAGAAGCATT+TGG | 0.333082 | 4.1:-29729973 | MS.gene52098:CDS |
TTAATCCTCAAACAGGCTTC+AGG | 0.336208 | 4.1:+29720473 | None:intergenic |
GGAATCCATAAGTGCAATAA+TGG | 0.336938 | 4.1:-29726760 | MS.gene52098:CDS |
GACTGGGTTAACAAAATTAC+TGG | 0.338112 | 4.1:-29722933 | MS.gene52098:CDS |
AAGTATTCCTACCGCGGGTT+TGG | 0.339913 | 4.1:+29723536 | None:intergenic |
TACACCCTTTGAATAGATTC+TGG | 0.340734 | 4.1:+29730775 | None:intergenic |
TTAGTTACCTGGTGAATATA+AGG | 0.349106 | 4.1:+29726597 | None:intergenic |
TTGAAGTTGATGTTACAATA+AGG | 0.349695 | 4.1:+29720561 | None:intergenic |
AAAGATGCCCAGTCTGGTTC+AGG | 0.351894 | 4.1:+29722601 | None:intergenic |
GTTGAGTTGTTGCTCCAATT+TGG | 0.352804 | 4.1:-29720371 | MS.gene52098:CDS |
ATTATTGAATAACTCCAAAA+TGG | 0.357080 | 4.1:+29721814 | None:intergenic |
GAACAAAATAGTGGCATGTT+TGG | 0.360541 | 4.1:-29723419 | MS.gene52098:CDS |
AGTATTCCTACCGCGGGTTT+GGG | 0.363976 | 4.1:+29723537 | None:intergenic |
AACATTAGATGTGAAGGTTT+GGG | 0.367326 | 4.1:-29721843 | MS.gene52098:CDS |
TAACATTAGATGTGAAGGTT+TGG | 0.369093 | 4.1:-29721844 | MS.gene52098:CDS |
CCAATTACTTGCCTCGCCTT+TGG | 0.383476 | 4.1:+29723791 | None:intergenic |
GCCATAGGGGAAGCATATAA+TGG | 0.389670 | 4.1:-29730009 | MS.gene52098:CDS |
AGCCTCTTTAATCCTCAAAC+AGG | 0.392863 | 4.1:+29720466 | None:intergenic |
TTTCGGGTATATCCTCTTCC+CGG | 0.398868 | 4.1:+29720648 | None:intergenic |
AGAGACACTACCCGCTTCTT+CGG | 0.403499 | 4.1:+29722675 | None:intergenic |
CATCAAGGATGCGAGGAGAT+TGG | 0.414926 | 4.1:-29723620 | MS.gene52098:CDS |
CAGAAAGTTGTTTCCGTGGT+TGG | 0.427831 | 4.1:-29720436 | MS.gene52098:CDS |
GGATAGTAATAAATCTTTGA+TGG | 0.429663 | 4.1:-29722710 | MS.gene52098:CDS |
CCTCCAATCGATACACTAAC+AGG | 0.431302 | 4.1:+29729934 | None:intergenic |
TAAGCTTGCAAAACGGATAC+AGG | 0.432000 | 4.1:-29723949 | MS.gene52098:CDS |
CCATCTGAGATACTTTAAAC+TGG | 0.439955 | 4.1:-29726733 | MS.gene52098:intron |
TTGTAAGGTTTCAAACCTAA+AGG | 0.442313 | 4.1:+29723843 | None:intergenic |
ATGATCCTGAAGCCTGTTTG+AGG | 0.443167 | 4.1:-29720478 | MS.gene52098:CDS |
TCTGGAGTGCATCGCAATCT+TGG | 0.445691 | 4.1:-29722547 | MS.gene52098:CDS |
TAGAGAAATCACTAGTCATC+CGG | 0.447952 | 4.1:-29720667 | MS.gene52098:CDS |
GCAGTGCTCCTGAACCAGAC+TGG | 0.452884 | 4.1:-29722609 | MS.gene52098:CDS |
TAAAGAGCTTCTTCGTTCAC+AGG | 0.454473 | 4.1:-29729434 | MS.gene52098:intron |
ATCTGTGCATTCTTATGATC+AGG | 0.455771 | 4.1:-29728673 | MS.gene52098:intron |
TCCATTATATGCTTCCCCTA+TGG | 0.456759 | 4.1:+29730008 | None:intergenic |
TGAAAATGCTTACCTTCGCT+TGG | 0.457999 | 4.1:+29721544 | None:intergenic |
TGTTTGGCAGATTCCGTTCA+AGG | 0.458883 | 4.1:-29723403 | MS.gene52098:CDS |
TTATATTATTACAGATCAAA+AGG | 0.462710 | 4.1:-29723561 | MS.gene52098:CDS |
ATTCCGTTCAAGGCATAATA+GGG | 0.463448 | 4.1:-29723393 | MS.gene52098:CDS |
AGGTTTAAAGATGCCCAGTC+TGG | 0.465472 | 4.1:+29722595 | None:intergenic |
TGTACAGGTAGAGCATGTAT+TGG | 0.472352 | 4.1:-29728903 | MS.gene52098:intron |
TGGTTGGTCTATATTACATC+TGG | 0.475078 | 4.1:-29720420 | MS.gene52098:CDS |
CCTTACAAAAGCTTTGAAGC+AGG | 0.478464 | 4.1:-29723828 | MS.gene52098:CDS |
AGGATCATGCTGATCTCCTT+CGG | 0.479476 | 4.1:+29720493 | None:intergenic |
ATCTCCTTCGGTATCATCAT+GGG | 0.480413 | 4.1:+29720505 | None:intergenic |
ATACAGAACACAGGCAGAGC+TGG | 0.488200 | 4.1:-29723925 | MS.gene52098:CDS |
AGGCTGAAAACGAAGCTGAT+AGG | 0.490205 | 4.1:-29722959 | MS.gene52098:CDS |
GATCTCCTTCGGTATCATCA+TGG | 0.492164 | 4.1:+29720504 | None:intergenic |
ATATAATTATAGTCGTTCTT+CGG | 0.492178 | 4.1:-29723441 | MS.gene52098:CDS |
GGTGAATATAAGGCTCCATT+TGG | 0.498660 | 4.1:+29726607 | None:intergenic |
CTGCTGTGTATTGAATGCTC+TGG | 0.498825 | 4.1:-29722565 | MS.gene52098:CDS |
ATCTATAACATTAGATGTGA+AGG | 0.499638 | 4.1:-29721849 | MS.gene52098:CDS |
AATTCAGCAACAATATCTTC+CGG | 0.500213 | 4.1:+29727729 | None:intergenic |
TATTGTAATTCTATTTGGGA+GGG | 0.502577 | 4.1:-29721779 | MS.gene52098:CDS |
CATTTATAAACTCTGTCAAC+CGG | 0.503947 | 4.1:+29728876 | None:intergenic |
CCTGTTAGTGTATCGATTGG+AGG | 0.508928 | 4.1:-29729934 | MS.gene52098:intron |
AATAGAAAATAACTGTTCCA+TGG | 0.511153 | 4.1:+29730830 | None:intergenic |
ACGAAGCTGATAGGATGGAC+TGG | 0.511664 | 4.1:-29722950 | MS.gene52098:CDS |
GACTGGGCATCTTTAAACCT+TGG | 0.512691 | 4.1:-29722592 | MS.gene52098:CDS |
TTTGAATTGGGAGGGATCTG+TGG | 0.513357 | 4.1:+29721578 | None:intergenic |
TAGAGCATGTATTGGTTGAC+CGG | 0.515229 | 4.1:-29728895 | MS.gene52098:CDS |
TATCTCCTCAGGACAGCCAT+AGG | 0.517176 | 4.1:-29730024 | MS.gene52098:intron |
ATACGACTTACTGAGCCAAA+TGG | 0.517252 | 4.1:-29726622 | MS.gene52098:CDS |
GTGGATGTGCACAGATCGAC+TGG | 0.517433 | 4.1:+29723335 | None:intergenic |
TTGAATAACTCCAAAATGGT+AGG | 0.518071 | 4.1:+29721818 | None:intergenic |
CTGCTTGTTGAATGCCAGTA+AGG | 0.518476 | 4.1:-29719382 | None:intergenic |
TGCGAGGAGATTGGAAAAGG+AGG | 0.519980 | 4.1:-29723611 | MS.gene52098:CDS |
CCGTCAGTTAAAGATGCTGC+TGG | 0.520835 | 4.1:-29719466 | MS.gene52098:CDS |
CTCTGCATCCATCTTTATGG+TGG | 0.521582 | 4.1:+29723316 | None:intergenic |
TCATTAGAAGCATTTGGAGG+TGG | 0.523290 | 4.1:-29729967 | MS.gene52098:CDS |
CAGTGCTCCTGAACCAGACT+GGG | 0.523590 | 4.1:-29722608 | MS.gene52098:CDS |
CTTCTCGTACGTTTATAGCC+TGG | 0.525427 | 4.1:+29720591 | None:intergenic |
ATCTCCTCAGGACAGCCATA+GGG | 0.525509 | 4.1:-29730023 | MS.gene52098:intron |
GTGCACATCCACCATAAAGA+TGG | 0.528945 | 4.1:-29723324 | MS.gene52098:CDS |
ATAAACATGTGTGACTATCA+TGG | 0.532084 | 4.1:-29720341 | MS.gene52098:CDS |
ATCACTAGTCATCCGGGAAG+AGG | 0.532106 | 4.1:-29720660 | MS.gene52098:CDS |
CGTTCTTCGGAACAAAATAG+TGG | 0.534792 | 4.1:-29723428 | MS.gene52098:CDS |
CGAAGCTGATAGGATGGACT+GGG | 0.535975 | 4.1:-29722949 | MS.gene52098:CDS |
GGATGCGAGGAGATTGGAAA+AGG | 0.543094 | 4.1:-29723614 | MS.gene52098:CDS |
TTATTGTAATTCTATTTGGG+AGG | 0.549054 | 4.1:-29721780 | MS.gene52098:CDS |
CGGTGCCAGAATCTATTCAA+AGG | 0.549863 | 4.1:-29730780 | MS.gene52098:CDS |
TGTTGATTTGCAAGATGCCA+AGG | 0.551744 | 4.1:-29728855 | MS.gene52098:intron |
CTGCCCTATTATGCCTTGAA+CGG | 0.557204 | 4.1:+29723390 | None:intergenic |
GTGATAAACTTGGATATGAC+GGG | 0.558972 | 4.1:+29729481 | None:intergenic |
CTGGAAATGCAGTGGTGCAA+TGG | 0.560564 | 4.1:+29720311 | None:intergenic |
AGGTTTCAAACCTAAAGGAC+GGG | 0.562104 | 4.1:+29723848 | None:intergenic |
CCAGCAGCATCTTTAACTGA+CGG | 0.564531 | 4.1:+29719466 | None:intergenic |
TATTGTTGCTGAATTAGAAG+AGG | 0.565780 | 4.1:-29727721 | MS.gene52098:intron |
ACGTAGTGCAGTGATAAACT+TGG | 0.565903 | 4.1:+29729471 | None:intergenic |
AAATGCAATTTACCATAATG+TGG | 0.565985 | 4.1:+29722778 | None:intergenic |
ATCTGTTAAAACGATCATCA+AGG | 0.567007 | 4.1:-29723635 | MS.gene52098:CDS |
TAGGGCAGTGTCACTAAATG+AGG | 0.567074 | 4.1:-29723375 | MS.gene52098:CDS |
GAAACAGAAAGTTGTTTCCG+TGG | 0.567443 | 4.1:-29720440 | MS.gene52098:CDS |
AGCAAGATAAGCTTGCAAAA+CGG | 0.567886 | 4.1:-29723956 | MS.gene52098:CDS |
TGCTTCTACATCATGATGAA+AGG | 0.569884 | 4.1:-29721754 | MS.gene52098:intron |
GAACCTATGCAAGGTGCTGA+TGG | 0.570131 | 4.1:-29723873 | MS.gene52098:CDS |
GATTCATTAGAAGCATTTGG+AGG | 0.570143 | 4.1:-29729970 | MS.gene52098:CDS |
AGTTATTGCTCCCATCTCCA+TGG | 0.571340 | 4.1:+29719423 | None:intergenic |
CCAGTTTAAAGTATCTCAGA+TGG | 0.575338 | 4.1:+29726733 | None:intergenic |
CACCATAAAGATGGATGCAG+AGG | 0.577911 | 4.1:-29723315 | MS.gene52098:CDS |
TACTGTGCTTGAAAGAGCCA+TGG | 0.578067 | 4.1:-29719440 | MS.gene52098:CDS |
TCAGCACACTTATCATTCCC+AGG | 0.578263 | 4.1:+29722634 | None:intergenic |
TGTAATAATATAAACTCCCA+TGG | 0.580809 | 4.1:+29723571 | None:intergenic |
AGAGAAATCACTAGTCATCC+GGG | 0.582473 | 4.1:-29720666 | MS.gene52098:CDS |
CTTGAAAGAGCCATGGAGAT+GGG | 0.583262 | 4.1:-29719433 | MS.gene52098:CDS |
CTTACAAAAGCTTTGAAGCA+GGG | 0.584053 | 4.1:-29723827 | MS.gene52098:CDS |
TTCTTTGACAAGTCAACAAG+AGG | 0.589107 | 4.1:-29722731 | MS.gene52098:CDS |
GGTGCCAGAATCTATTCAAA+GGG | 0.589241 | 4.1:-29730779 | MS.gene52098:CDS |
TGGGAGGGATCTGTGGAGCA+TGG | 0.590721 | 4.1:+29721585 | None:intergenic |
AGTGATAAACTTGGATATGA+CGG | 0.590791 | 4.1:+29729480 | None:intergenic |
TCTGTGGAGCATGGTTTCGA+AGG | 0.591143 | 4.1:+29721594 | None:intergenic |
TGCACCACTGCATTTCCAGT+GGG | 0.592100 | 4.1:-29720307 | MS.gene52098:CDS |
GATCCTGTTAGTGTATCGAT+TGG | 0.593171 | 4.1:-29729937 | MS.gene52098:CDS |
AAGGTTTCAAACCTAAAGGA+CGG | 0.596857 | 4.1:+29723847 | None:intergenic |
AAACACGAAATATGAAGATG+TGG | 0.600151 | 4.1:-29720531 | MS.gene52098:CDS |
AACAATCATTTGCAGTGTAG+GGG | 0.601544 | 4.1:-29721628 | MS.gene52098:intron |
GCTTGAAAGAGCCATGGAGA+TGG | 0.603752 | 4.1:-29719434 | MS.gene52098:CDS |
GAGCCATCAGCACCTTGCAT+AGG | 0.606773 | 4.1:+29723870 | None:intergenic |
GGGATGCAGTCTGCAACCAA+AGG | 0.607648 | 4.1:-29723807 | MS.gene52098:CDS |
TGCTTCTAATGAATCAGCAA+AGG | 0.614038 | 4.1:+29729978 | None:intergenic |
TAGATTCAAACAGTTAAACA+AGG | 0.615988 | 4.1:-29723660 | MS.gene52098:CDS |
TTGCACCACTGCATTTCCAG+TGG | 0.618119 | 4.1:-29720308 | MS.gene52098:CDS |
AGCCTGTTTGAGGATTAAAG+AGG | 0.619620 | 4.1:-29720468 | MS.gene52098:CDS |
CAGTTTAAAGTATCTCAGAT+GGG | 0.621267 | 4.1:+29726734 | None:intergenic |
CTTACTGGCATTCAACAAGC+AGG | 0.623146 | 4.1:+29719383 | None:intergenic |
AGAAAAGTACATCCAAGCGA+AGG | 0.625858 | 4.1:-29721556 | MS.gene52098:intron |
TGAAAACGAAGCTGATAGGA+TGG | 0.630928 | 4.1:-29722955 | MS.gene52098:CDS |
TCTTGGAGTTCATATCTCAA+AGG | 0.632215 | 4.1:-29722530 | MS.gene52098:intron |
ATGCAGAGGATACAGATCTA+CGG | 0.634035 | 4.1:-29723301 | MS.gene52098:CDS |
TATATCAGGAATCTCGCCGT+CGG | 0.642766 | 4.1:-29728704 | MS.gene52098:intron |
TCTCCTCAGGACAGCCATAG+GGG | 0.645261 | 4.1:-29730022 | MS.gene52098:intron |
AATGGAGCCTTATATTCACC+AGG | 0.651706 | 4.1:-29726604 | MS.gene52098:intron |
GTTCCCCATGATGATACCGA+AGG | 0.653048 | 4.1:-29720509 | MS.gene52098:CDS |
TCTCCTTCGGTATCATCATG+GGG | 0.654258 | 4.1:+29720506 | None:intergenic |
GCAGTCTGCAACCAAAGGCG+AGG | 0.654904 | 4.1:-29723802 | MS.gene52098:intron |
AAATACATACTAGATTGAAG+CGG | 0.659466 | 4.1:+29726912 | None:intergenic |
AAACGATCATCAAGGATGCG+AGG | 0.666466 | 4.1:-29723627 | MS.gene52098:CDS |
TTCTTTGAAGAAGAATACAC+CGG | 0.667197 | 4.1:-29727748 | MS.gene52098:CDS |
AGCAATACTGAACCTATGCA+AGG | 0.668361 | 4.1:-29723882 | MS.gene52098:CDS |
CAGCTGATGAGTTAAAGGAT+CGG | 0.673704 | 4.1:-29730800 | MS.gene52098:CDS |
CAATACACAGCAGTATACCA+AGG | 0.675286 | 4.1:+29722575 | None:intergenic |
GCACAGATTTGTCAAACCGA+CGG | 0.678759 | 4.1:+29728688 | None:intergenic |
ATACACTAACAGGATCGTCA+TGG | 0.679277 | 4.1:+29729944 | None:intergenic |
ATCAAAAGGACCCAAACCCG+CGG | 0.686528 | 4.1:-29723547 | MS.gene52098:intron |
GATGTAATATAGACCAACCA+CGG | 0.697038 | 4.1:+29720423 | None:intergenic |
GATACAGGAATACAGAACAC+AGG | 0.698065 | 4.1:-29723934 | MS.gene52098:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 29719384 | 29730850 | 29719384 | ID=MS.gene52098 |
chr4.1 | mRNA | 29719384 | 29730850 | 29719384 | ID=MS.gene52098.t1;Parent=MS.gene52098 |
chr4.1 | exon | 29730765 | 29730850 | 29730765 | ID=MS.gene52098.t1.exon1;Parent=MS.gene52098.t1 |
chr4.1 | CDS | 29730765 | 29730850 | 29730765 | ID=cds.MS.gene52098.t1;Parent=MS.gene52098.t1 |
chr4.1 | exon | 29729935 | 29730035 | 29729935 | ID=MS.gene52098.t1.exon2;Parent=MS.gene52098.t1 |
chr4.1 | CDS | 29729935 | 29730035 | 29729935 | ID=cds.MS.gene52098.t1;Parent=MS.gene52098.t1 |
chr4.1 | exon | 29729435 | 29729505 | 29729435 | ID=MS.gene52098.t1.exon3;Parent=MS.gene52098.t1 |
chr4.1 | CDS | 29729435 | 29729505 | 29729435 | ID=cds.MS.gene52098.t1;Parent=MS.gene52098.t1 |
chr4.1 | exon | 29728856 | 29728918 | 29728856 | ID=MS.gene52098.t1.exon4;Parent=MS.gene52098.t1 |
chr4.1 | CDS | 29728856 | 29728918 | 29728856 | ID=cds.MS.gene52098.t1;Parent=MS.gene52098.t1 |
chr4.1 | exon | 29728674 | 29728718 | 29728674 | ID=MS.gene52098.t1.exon5;Parent=MS.gene52098.t1 |
chr4.1 | CDS | 29728674 | 29728718 | 29728674 | ID=cds.MS.gene52098.t1;Parent=MS.gene52098.t1 |
chr4.1 | exon | 29727722 | 29727787 | 29727722 | ID=MS.gene52098.t1.exon6;Parent=MS.gene52098.t1 |
chr4.1 | CDS | 29727722 | 29727787 | 29727722 | ID=cds.MS.gene52098.t1;Parent=MS.gene52098.t1 |
chr4.1 | exon | 29726922 | 29726969 | 29726922 | ID=MS.gene52098.t1.exon7;Parent=MS.gene52098.t1 |
chr4.1 | CDS | 29726922 | 29726969 | 29726922 | ID=cds.MS.gene52098.t1;Parent=MS.gene52098.t1 |
chr4.1 | exon | 29726734 | 29726829 | 29726734 | ID=MS.gene52098.t1.exon8;Parent=MS.gene52098.t1 |
chr4.1 | CDS | 29726734 | 29726829 | 29726734 | ID=cds.MS.gene52098.t1;Parent=MS.gene52098.t1 |
chr4.1 | exon | 29726605 | 29726646 | 29726605 | ID=MS.gene52098.t1.exon9;Parent=MS.gene52098.t1 |
chr4.1 | CDS | 29726605 | 29726646 | 29726605 | ID=cds.MS.gene52098.t1;Parent=MS.gene52098.t1 |
chr4.1 | exon | 29723803 | 29724021 | 29723803 | ID=MS.gene52098.t1.exon10;Parent=MS.gene52098.t1 |
chr4.1 | CDS | 29723803 | 29724021 | 29723803 | ID=cds.MS.gene52098.t1;Parent=MS.gene52098.t1 |
chr4.1 | exon | 29723548 | 29723679 | 29723548 | ID=MS.gene52098.t1.exon11;Parent=MS.gene52098.t1 |
chr4.1 | CDS | 29723548 | 29723679 | 29723548 | ID=cds.MS.gene52098.t1;Parent=MS.gene52098.t1 |
chr4.1 | exon | 29723256 | 29723474 | 29723256 | ID=MS.gene52098.t1.exon12;Parent=MS.gene52098.t1 |
chr4.1 | CDS | 29723256 | 29723474 | 29723256 | ID=cds.MS.gene52098.t1;Parent=MS.gene52098.t1 |
chr4.1 | exon | 29722893 | 29722979 | 29722893 | ID=MS.gene52098.t1.exon13;Parent=MS.gene52098.t1 |
chr4.1 | CDS | 29722893 | 29722979 | 29722893 | ID=cds.MS.gene52098.t1;Parent=MS.gene52098.t1 |
chr4.1 | exon | 29722531 | 29722800 | 29722531 | ID=MS.gene52098.t1.exon14;Parent=MS.gene52098.t1 |
chr4.1 | CDS | 29722531 | 29722800 | 29722531 | ID=cds.MS.gene52098.t1;Parent=MS.gene52098.t1 |
chr4.1 | exon | 29721755 | 29721876 | 29721755 | ID=MS.gene52098.t1.exon15;Parent=MS.gene52098.t1 |
chr4.1 | CDS | 29721755 | 29721876 | 29721755 | ID=cds.MS.gene52098.t1;Parent=MS.gene52098.t1 |
chr4.1 | exon | 29721557 | 29721635 | 29721557 | ID=MS.gene52098.t1.exon16;Parent=MS.gene52098.t1 |
chr4.1 | CDS | 29721557 | 29721635 | 29721557 | ID=cds.MS.gene52098.t1;Parent=MS.gene52098.t1 |
chr4.1 | exon | 29720275 | 29720693 | 29720275 | ID=MS.gene52098.t1.exon17;Parent=MS.gene52098.t1 |
chr4.1 | CDS | 29720275 | 29720693 | 29720275 | ID=cds.MS.gene52098.t1;Parent=MS.gene52098.t1 |
chr4.1 | exon | 29719384 | 29719498 | 29719384 | ID=MS.gene52098.t1.exon18;Parent=MS.gene52098.t1 |
chr4.1 | CDS | 29719384 | 29719498 | 29719384 | ID=cds.MS.gene52098.t1;Parent=MS.gene52098.t1 |
Gene Sequence |
Protein sequence |