Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52385.t1 | XP_003588968.2 | 94.1 | 406 | 21 | 1 | 1 | 406 | 21 | 423 | 1.20E-213 | 752.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52385.t1 | B9DFU2 | 67.8 | 401 | 113 | 3 | 6 | 406 | 32 | 416 | 2.2e-150 | 533.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52385.t1 | G7I9V8 | 94.1 | 406 | 21 | 1 | 1 | 406 | 21 | 423 | 8.9e-214 | 752.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050163 | MS.gene52385 | -0.816806 | 4.57E-52 | -1.69E-46 |
| MS.gene050165 | MS.gene52385 | -0.805228 | 1.48E-49 | -1.69E-46 |
| MS.gene051579 | MS.gene52385 | 0.920454 | 1.25E-87 | -1.69E-46 |
| MS.gene055956 | MS.gene52385 | 0.825663 | 4.15E-54 | -1.69E-46 |
| MS.gene056550 | MS.gene52385 | 0.80635 | 8.58E-50 | -1.69E-46 |
| MS.gene059677 | MS.gene52385 | -0.826852 | 2.16E-54 | -1.69E-46 |
| MS.gene060337 | MS.gene52385 | 0.821996 | 3.00E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52385.t1 | MTR_1g015860 | 87.500 | 32 | 4 | 0 | 396 | 427 | 418 | 449 | 2.07e-12 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 86 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTCAAAATCTGCCTTAT+TGG | 0.113051 | 1.4:-6430093 | None:intergenic |
| TTGAGGTGTCATTAAGATTT+TGG | 0.154853 | 1.4:-6429801 | None:intergenic |
| TTCATCTTAGTGACTTTAAT+TGG | 0.177989 | 1.4:+6428218 | None:intergenic |
| GTTATCTCTATTGGCCATTT+TGG | 0.180252 | 1.4:+6428252 | MS.gene52385:CDS |
| ATTCTCTTGCATTCAATATA+AGG | 0.184506 | 1.4:-6430236 | None:intergenic |
| ATTGTCATCTATTGTTTATT+TGG | 0.197360 | 1.4:+6430353 | MS.gene52385:CDS |
| TAACATCAGTTGCTAGTCTT+AGG | 0.272964 | 1.4:-6429852 | None:intergenic |
| GCTTCTCCTCTTCACCAAAA+AGG | 0.273113 | 1.4:+6429026 | MS.gene52385:CDS |
| AGACTAGCAACTGATGTTAT+TGG | 0.279360 | 1.4:+6429856 | MS.gene52385:CDS |
| GGTTCCTTCTCAATTATAAT+TGG | 0.285630 | 1.4:+6430045 | MS.gene52385:CDS |
| ACTTTCCTTAACTTCCAAAA+TGG | 0.297759 | 1.4:-6428266 | None:intergenic |
| CTTCGAGAGATTGATGGATT+TGG | 0.326636 | 1.4:+6430408 | MS.gene52385:CDS |
| CTTCCATTGTTAGCAAAGTA+TGG | 0.330954 | 1.4:+6428323 | MS.gene52385:CDS |
| TTCTCTTGCATTCAATATAA+GGG | 0.331969 | 1.4:-6430235 | None:intergenic |
| TCATTGAGATCTTTAGCATT+AGG | 0.333046 | 1.4:-6430447 | None:intergenic |
| CTATTCTTCAAGAGCCAATA+AGG | 0.355032 | 1.4:+6430079 | MS.gene52385:CDS |
| CTTATTGGCTCTTGAAGAAT+AGG | 0.355780 | 1.4:-6430078 | None:intergenic |
| TCAGTCCTTGCCAAGCAATA+TGG | 0.366947 | 1.4:+6428359 | MS.gene52385:CDS |
| TAAATGGAGCAGATTTCATA+TGG | 0.376669 | 1.4:+6428899 | MS.gene52385:intron |
| GATGAGAAATACTATATTAT+CGG | 0.376690 | 1.4:+6429714 | MS.gene52385:CDS |
| GAAGAGAATACCAGGCACTA+TGG | 0.386147 | 1.4:+6430110 | MS.gene52385:CDS |
| CTCCACAACACAACTTAAGA+TGG | 0.387329 | 1.4:+6430014 | MS.gene52385:CDS |
| ACATATGAACACTTACTTGC+CGG | 0.390491 | 1.4:+6430309 | MS.gene52385:CDS |
| TGAAGAGGAGAAGCAGAGAT+AGG | 0.392692 | 1.4:-6429017 | None:intergenic |
| ACAAGAAATTCTTCGAAGTT+CGG | 0.401276 | 1.4:-6430212 | None:intergenic |
| CAATATAGGAACCTGTAGAT+AGG | 0.401929 | 1.4:-6428383 | None:intergenic |
| CTTGAAGAATAGGAGCAATT+AGG | 0.407794 | 1.4:-6430068 | None:intergenic |
| TGGAAGTTAAGGAAAGTTCC+AGG | 0.415935 | 1.4:+6428272 | MS.gene52385:CDS |
| GATTAGTGGGTTATCTCTAT+TGG | 0.416189 | 1.4:+6428243 | MS.gene52385:CDS |
| CCACCATCTCTGCCTCTTGT+AGG | 0.416631 | 1.4:+6428296 | MS.gene52385:CDS |
| GGAGAGGGAATGCTTCTGTT+TGG | 0.419950 | 1.4:-6428996 | None:intergenic |
| GACTTTAATTGGAGGATTAG+TGG | 0.424777 | 1.4:+6428229 | MS.gene52385:CDS |
| AGAGGCAGAGATGGTGGGCC+TGG | 0.431699 | 1.4:-6428290 | None:intergenic |
| AGCAATATGGCCCTATCTAC+AGG | 0.440942 | 1.4:+6428372 | MS.gene52385:CDS |
| GCAAGGACTGAGAAAACGTC+AGG | 0.456279 | 1.4:-6428347 | None:intergenic |
| CTTTGGTATGACAGGGAACA+TGG | 0.458198 | 1.4:+6431056 | MS.gene52385:intron |
| GCAGCATTTGGTGTCAACTT+TGG | 0.461085 | 1.4:+6429883 | MS.gene52385:CDS |
| TGAACACTTACTTGCCGGCT+CGG | 0.461430 | 1.4:+6430314 | MS.gene52385:CDS |
| AACATCAGTTGCTAGTCTTA+GGG | 0.462837 | 1.4:-6429851 | None:intergenic |
| GTTATTGGAGATGCAGCATT+TGG | 0.463478 | 1.4:+6429871 | MS.gene52385:CDS |
| CAACTTAAGATGGATTTGTC+TGG | 0.468898 | 1.4:+6430024 | MS.gene52385:CDS |
| AAATTGCTTCGAGAGATTGA+TGG | 0.471171 | 1.4:+6430402 | MS.gene52385:CDS |
| ACATCAAATGAAGTAGATAT+AGG | 0.477410 | 1.4:+6430644 | MS.gene52385:CDS |
| ACTTTAATTGGAGGATTAGT+GGG | 0.481003 | 1.4:+6428230 | MS.gene52385:CDS |
| ATTGATTCACAAATTGAATG+AGG | 0.486454 | 1.4:-6429916 | None:intergenic |
| GCATCTGCTATGATTATAAG+AGG | 0.491398 | 1.4:-6428930 | None:intergenic |
| GAATACCAGGCACTATGGAT+TGG | 0.497621 | 1.4:+6430115 | MS.gene52385:CDS |
| TGATATTGTTAAGAAGAGAA+TGG | 0.498801 | 1.4:+6430179 | MS.gene52385:CDS |
| ATTTATTCAGGTGATTAAAG+AGG | 0.500355 | 1.4:+6430580 | MS.gene52385:intron |
| ATCTTAGTGACTTTAATTGG+AGG | 0.511042 | 1.4:+6428221 | None:intergenic |
| ATCCATCTTAAGTTGTGTTG+TGG | 0.524233 | 1.4:-6430016 | None:intergenic |
| TCACTAACCTGATCAAGATA+AGG | 0.533650 | 1.4:-6430477 | None:intergenic |
| AAAAGATGTGGTAGCCGAGC+CGG | 0.534170 | 1.4:-6430328 | None:intergenic |
| GTAGATAGGGCCATATTGCT+TGG | 0.534282 | 1.4:-6428369 | None:intergenic |
| AACAATATCATCAAGACGAC+CGG | 0.536041 | 1.4:-6430166 | None:intergenic |
| GATTTACACTGTCTCTCCAC+TGG | 0.536380 | 1.4:+6430610 | MS.gene52385:CDS |
| TAGGCCAATTATAATTGAGA+AGG | 0.537089 | 1.4:-6430049 | None:intergenic |
| AATATAGGAACCTGTAGATA+GGG | 0.539554 | 1.4:-6428382 | None:intergenic |
| TGCAGAGCTTTGTAAAGAAG+TGG | 0.544279 | 1.4:+6428950 | MS.gene52385:CDS |
| TGCTAGTCATCCAAATGTTG+AGG | 0.549862 | 1.4:+6430377 | MS.gene52385:CDS |
| GGAGAAGCAGAGATAGGAGA+GGG | 0.549868 | 1.4:-6429011 | None:intergenic |
| AAAATTGTAGGGACTTGCAA+TGG | 0.555262 | 1.4:+6429686 | MS.gene52385:intron |
| CCTACAAGAGGCAGAGATGG+TGG | 0.557785 | 1.4:-6428296 | None:intergenic |
| AGGAGAAGCAGAGATAGGAG+AGG | 0.562756 | 1.4:-6429012 | None:intergenic |
| GCATTAGGTATCTTATCATG+TGG | 0.572019 | 1.4:-6430432 | None:intergenic |
| TGTCCTACAAGAGGCAGAGA+TGG | 0.572269 | 1.4:-6428299 | None:intergenic |
| GCTAGTCATCCAAATGTTGA+GGG | 0.575221 | 1.4:+6430378 | MS.gene52385:CDS |
| AAATGGAGCAGATTTCATAT+GGG | 0.585010 | 1.4:+6428900 | MS.gene52385:intron |
| ACATGGGTATGGTTAGCACT+TGG | 0.594222 | 1.4:+6431073 | MS.gene52385:CDS |
| TATGACAGGGAACATGGGTA+TGG | 0.601202 | 1.4:+6431062 | MS.gene52385:intron |
| GGGCCATACTTTGCTAACAA+TGG | 0.602923 | 1.4:-6428326 | None:intergenic |
| GATGTTTCTCTTGCAACCAG+TGG | 0.603659 | 1.4:-6430626 | None:intergenic |
| CATACTTTGCTAACAATGGA+AGG | 0.605562 | 1.4:-6428322 | None:intergenic |
| TAGGGCCATATTGCTTGGCA+AGG | 0.608634 | 1.4:-6428364 | None:intergenic |
| AAGTAAGTGTTCATATGTAA+CGG | 0.608761 | 1.4:-6430304 | None:intergenic |
| GCAGAGCTTTGTAAAGAAGT+GGG | 0.612046 | 1.4:+6428951 | MS.gene52385:CDS |
| TCAAATGAAGTAGATATAGG+AGG | 0.612765 | 1.4:+6430647 | MS.gene52385:CDS |
| AGGTGATTAAAGAGGCAATG+AGG | 0.626001 | 1.4:+6430588 | MS.gene52385:intron |
| CTACAAGAGGCAGAGATGGT+GGG | 0.630733 | 1.4:-6428295 | None:intergenic |
| AGATGACAATGTAAAAGATG+TGG | 0.630991 | 1.4:-6430340 | None:intergenic |
| AAGAGAATCAAAGAGTGTGT+CGG | 0.648095 | 1.4:+6430251 | MS.gene52385:CDS |
| AATGGAAGGTGTCCTACAAG+AGG | 0.653397 | 1.4:-6428308 | None:intergenic |
| TTTGGTATGACAGGGAACAT+GGG | 0.663814 | 1.4:+6431057 | MS.gene52385:intron |
| ACTAAGTTGGCTAAGTGTGA+TGG | 0.670172 | 1.4:-6429745 | None:intergenic |
| AGTTGGCTAAGTGTGATGGT+TGG | 0.695964 | 1.4:-6429741 | None:intergenic |
| CAAGGACTGAGAAAACGTCA+GGG | 0.696831 | 1.4:-6428346 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAACTGTTATTGT+TGG | + | chr1.4:6428480-6428499 | MS.gene52385:intron | 15.0% |
| !! | AAAAAAAATACAAGTGTATT+TGG | + | chr1.4:6428650-6428669 | MS.gene52385:intron | 15.0% |
| !! | ATTAAGGTTAAAGATATTAT+AGG | + | chr1.4:6429083-6429102 | MS.gene52385:intron | 15.0% |
| !! | TAAAATTCATTCAAATACAA+TGG | + | chr1.4:6429480-6429499 | MS.gene52385:intron | 15.0% |
| !! | TATAAATATGTAAATATACC+TGG | - | chr1.4:6429063-6429082 | None:intergenic | 15.0% |
| !! | TCTTAAATAACACATAAATT+TGG | - | chr1.4:6429131-6429150 | None:intergenic | 15.0% |
| !! | TGTACAAATAAAAATTTAAC+CGG | + | chr1.4:6430147-6430166 | MS.gene52385:CDS | 15.0% |
| !! | TTGTAAAAAAATAAAATCCA+TGG | - | chr1.4:6430704-6430723 | None:intergenic | 15.0% |
| !!! | AACAACTAATTTAAAATTGT+AGG | + | chr1.4:6429674-6429693 | MS.gene52385:intron | 15.0% |
| !!! | ACAACTAATTTAAAATTGTA+GGG | + | chr1.4:6429675-6429694 | MS.gene52385:intron | 15.0% |
| !!! | TACTTTTTGACTTTTTATTT+TGG | + | chr1.4:6430911-6430930 | MS.gene52385:intron | 15.0% |
| !! | AATTCAAATATGTCTATCTA+AGG | + | chr1.4:6431026-6431045 | MS.gene52385:intron | 20.0% |
| !! | ATATGATCAATACTATTTAG+TGG | + | chr1.4:6429230-6429249 | MS.gene52385:intron | 20.0% |
| !! | ATTGTCATCTATTGTTTATT+TGG | + | chr1.4:6430353-6430372 | MS.gene52385:CDS | 20.0% |
| !! | GATGAGAAATACTATATTAT+CGG | + | chr1.4:6429714-6429733 | MS.gene52385:CDS | 20.0% |
| !! | TATGATCAATACTATTTAGT+GGG | + | chr1.4:6429231-6429250 | MS.gene52385:intron | 20.0% |
| !!! | ATATTAGTTTTTGTTGGATT+TGG | + | chr1.4:6430824-6430843 | MS.gene52385:intron | 20.0% |
| !!! | CATATGATATTAGTTTTTGT+TGG | + | chr1.4:6430818-6430837 | MS.gene52385:intron | 20.0% |
| !!! | CTAGGGTTAATATTTTATTT+AGG | + | chr1.4:6428707-6428726 | MS.gene52385:intron | 20.0% |
| !!! | TAAGTTCTTTTCATTTATTC+AGG | + | chr1.4:6430568-6430587 | MS.gene52385:intron | 20.0% |
| !!! | TATTGTTCCTATTTGTTAAA+TGG | + | chr1.4:6428883-6428902 | MS.gene52385:intron | 20.0% |
| ! | AAGTAAGTGTTCATATGTAA+CGG | - | chr1.4:6430307-6430326 | None:intergenic | 25.0% |
| ! | ACATCAAATGAAGTAGATAT+AGG | + | chr1.4:6430644-6430663 | MS.gene52385:CDS | 25.0% |
| ! | ATTCTCTTGCATTCAATATA+AGG | - | chr1.4:6430239-6430258 | None:intergenic | 25.0% |
| ! | ATTTATTCAGGTGATTAAAG+AGG | + | chr1.4:6430580-6430599 | MS.gene52385:intron | 25.0% |
| ! | ATTTGGTCATGTAAATTATG+TGG | - | chr1.4:6429114-6429133 | None:intergenic | 25.0% |
| ! | GTGTGACAAATATATTATTG+AGG | - | chr1.4:6429291-6429310 | None:intergenic | 25.0% |
| ! | TATGTATGCAAGTACAATAT+AGG | - | chr1.4:6428400-6428419 | None:intergenic | 25.0% |
| ! | TGATATTGTTAAGAAGAGAA+TGG | + | chr1.4:6430179-6430198 | MS.gene52385:CDS | 25.0% |
| ! | TTCTCTTGCATTCAATATAA+GGG | - | chr1.4:6430238-6430257 | None:intergenic | 25.0% |
| !! | AAAGATTATGTCTTCTTTTG+AGG | - | chr1.4:6429821-6429840 | None:intergenic | 25.0% |
| !! | AGAACTTACAACTATTTTCT+TGG | - | chr1.4:6430556-6430575 | None:intergenic | 25.0% |
| !! | ATCTTGCAGTCTATTTTATA+TGG | - | chr1.4:6429313-6429332 | None:intergenic | 25.0% |
| !! | ATTGATTCACAAATTGAATG+AGG | - | chr1.4:6429919-6429938 | None:intergenic | 25.0% |
| !! | CACAAAAGATAAAAGAGTTT+TGG | - | chr1.4:6429510-6429529 | None:intergenic | 25.0% |
| !! | TAAGTGTGTATGTCATTTAT+GGG | - | chr1.4:6429566-6429585 | None:intergenic | 25.0% |
| !! | TCGATAAATGATTGCATTTT+AGG | - | chr1.4:6429772-6429791 | None:intergenic | 25.0% |
| !! | TTAAGTGTGTATGTCATTTA+TGG | - | chr1.4:6429567-6429586 | None:intergenic | 25.0% |
| !!! | AGATTAGTTTGAACTGTAAA+TGG | + | chr1.4:6429148-6429167 | MS.gene52385:intron | 25.0% |
| !!! | ATTTTGACTTGTGAATTTTG+TGG | + | chr1.4:6428590-6428609 | MS.gene52385:intron | 25.0% |
| !!! | GTGTGTATTTTTAAAATGAG+TGG | + | chr1.4:6429527-6429546 | MS.gene52385:intron | 25.0% |
| !!! | GTTTGTTTTGAACTTTGATT+TGG | + | chr1.4:6430521-6430540 | MS.gene52385:intron | 25.0% |
| AAAAAGGTTTATTCTTCACC+AGG | + | chr1.4:6429042-6429061 | MS.gene52385:CDS | 30.0% | |
| AAATGGAGCAGATTTCATAT+GGG | + | chr1.4:6428900-6428919 | MS.gene52385:intron | 30.0% | |
| AACATCAAAATACAACGATG+CGG | - | chr1.4:6429647-6429666 | None:intergenic | 30.0% | |
| AACCAGAGAACTAAAAGAAA+AGG | - | chr1.4:6428453-6428472 | None:intergenic | 30.0% | |
| AAGTTCATCCTCATCAAAAA+GGG | - | chr1.4:6428548-6428567 | None:intergenic | 30.0% | |
| AATATAGGAACCTGTAGATA+GGG | - | chr1.4:6428385-6428404 | None:intergenic | 30.0% | |
| ACAAGAAATTCTTCGAAGTT+CGG | - | chr1.4:6430215-6430234 | None:intergenic | 30.0% | |
| ACTAGTGTTAAGATAAGTTC+TGG | + | chr1.4:6430725-6430744 | MS.gene52385:intron | 30.0% | |
| ACTTTCCTTAACTTCCAAAA+TGG | - | chr1.4:6428269-6428288 | None:intergenic | 30.0% | |
| AGATGACAATGTAAAAGATG+TGG | - | chr1.4:6430343-6430362 | None:intergenic | 30.0% | |
| AGGTAATATATCTTTGTCCA+TGG | + | chr1.4:6430684-6430703 | MS.gene52385:intron | 30.0% | |
| ATCTGCTCCATTTAACAAAT+AGG | - | chr1.4:6428893-6428912 | None:intergenic | 30.0% | |
| CAAATGCGTGATTTCTTATT+CGG | + | chr1.4:6430999-6431018 | MS.gene52385:intron | 30.0% | |
| GGACAAAGATATATTACCTT+TGG | - | chr1.4:6430683-6430702 | None:intergenic | 30.0% | |
| GGTTCCTTCTCAATTATAAT+TGG | + | chr1.4:6430045-6430064 | MS.gene52385:CDS | 30.0% | |
| TAAATGGAGCAGATTTCATA+TGG | + | chr1.4:6428899-6428918 | MS.gene52385:intron | 30.0% | |
| TAGGCCAATTATAATTGAGA+AGG | - | chr1.4:6430052-6430071 | None:intergenic | 30.0% | |
| TCAAATGAAGTAGATATAGG+AGG | + | chr1.4:6430647-6430666 | MS.gene52385:CDS | 30.0% | |
| TCATTGAGATCTTTAGCATT+AGG | - | chr1.4:6430450-6430469 | None:intergenic | 30.0% | |
| ! | AAGTTTTCCTTATCTTGATC+AGG | + | chr1.4:6430470-6430489 | MS.gene52385:CDS | 30.0% |
| ! | ACATGTTACTCTAGAAAATG+TGG | - | chr1.4:6430938-6430957 | None:intergenic | 30.0% |
| ! | ACTTTAATTGGAGGATTAGT+GGG | + | chr1.4:6428230-6428249 | MS.gene52385:CDS | 30.0% |
| ! | GATATATTACCTTTGGAAGA+AGG | - | chr1.4:6430676-6430695 | None:intergenic | 30.0% |
| ! | TCAACATTGCATTTTTCATG+TGG | + | chr1.4:6429377-6429396 | MS.gene52385:intron | 30.0% |
| ! | TGCATTTTTCATGTGGATTT+CGG | + | chr1.4:6429384-6429403 | MS.gene52385:intron | 30.0% |
| ! | TGGTGAAGAATAAACCTTTT+TGG | - | chr1.4:6429043-6429062 | None:intergenic | 30.0% |
| !! | AATAAACCTTTTTGGTGAAG+AGG | - | chr1.4:6429035-6429054 | None:intergenic | 30.0% |
| !! | GAACTTTGATTTGGTTGAAA+GGG | + | chr1.4:6430530-6430549 | MS.gene52385:intron | 30.0% |
| !! | TGAACTTTGATTTGGTTGAA+AGG | + | chr1.4:6430529-6430548 | MS.gene52385:intron | 30.0% |
| !!! | TAGTCCCATCACAATTTTTT+TGG | + | chr1.4:6430789-6430808 | MS.gene52385:intron | 30.0% |
| !!! | TTGAGGTGTCATTAAGATTT+TGG | - | chr1.4:6429804-6429823 | None:intergenic | 30.0% |
| AAAATTGTAGGGACTTGCAA+TGG | + | chr1.4:6429686-6429705 | MS.gene52385:intron | 35.0% | |
| AAATTGCTTCGAGAGATTGA+TGG | + | chr1.4:6430402-6430421 | MS.gene52385:CDS | 35.0% | |
| AACAATATCATCAAGACGAC+CGG | - | chr1.4:6430169-6430188 | None:intergenic | 35.0% | |
| ACATATGAACACTTACTTGC+CGG | + | chr1.4:6430309-6430328 | MS.gene52385:CDS | 35.0% | |
| ACTGTCTGATCAAGATCAAA+TGG | + | chr1.4:6430886-6430905 | MS.gene52385:intron | 35.0% | |
| AGACTAGCAACTGATGTTAT+TGG | + | chr1.4:6429856-6429875 | MS.gene52385:CDS | 35.0% | |
| AGAGCCAGAAAAATTCAAAC+CGG | + | chr1.4:6431126-6431145 | MS.gene52385:CDS | 35.0% | |
| CAATATAGGAACCTGTAGAT+AGG | - | chr1.4:6428386-6428405 | None:intergenic | 35.0% | |
| CAGAGAACTAAAAGAAAAGG+AGG | - | chr1.4:6428450-6428469 | None:intergenic | 35.0% | |
| CATACTTTGCTAACAATGGA+AGG | - | chr1.4:6428325-6428344 | None:intergenic | 35.0% | |
| CCCTCCAAAAAAATTGTGAT+GGG | - | chr1.4:6430796-6430815 | None:intergenic | 35.0% | |
| CTATTCTTCAAGAGCCAATA+AGG | + | chr1.4:6430079-6430098 | MS.gene52385:CDS | 35.0% | |
| CTCTTCAAAATCTGCCTTAT+TGG | - | chr1.4:6430096-6430115 | None:intergenic | 35.0% | |
| CTTCCATTGTTAGCAAAGTA+TGG | + | chr1.4:6428323-6428342 | MS.gene52385:CDS | 35.0% | |
| CTTGAAGAATAGGAGCAATT+AGG | - | chr1.4:6430071-6430090 | None:intergenic | 35.0% | |
| CTTGATCAGACAGTTCAAAT+TGG | - | chr1.4:6430880-6430899 | None:intergenic | 35.0% | |
| CTTTATGCTTTGGTATGACA+GGG | + | chr1.4:6431049-6431068 | MS.gene52385:intron | 35.0% | |
| GAAGTTCATCCTCATCAAAA+AGG | - | chr1.4:6428549-6428568 | None:intergenic | 35.0% | |
| GACTTTAATTGGAGGATTAG+TGG | + | chr1.4:6428229-6428248 | MS.gene52385:CDS | 35.0% | |
| GCATCTGCTATGATTATAAG+AGG | - | chr1.4:6428933-6428952 | None:intergenic | 35.0% | |
| GCATTAGGTATCTTATCATG+TGG | - | chr1.4:6430435-6430454 | None:intergenic | 35.0% | |
| GTTAATGCCATTCAACTTAG+TGG | - | chr1.4:6429425-6429444 | None:intergenic | 35.0% | |
| TCACTAACCTGATCAAGATA+AGG | - | chr1.4:6430480-6430499 | None:intergenic | 35.0% | |
| TTTGACATAGTTGTGCAATC+TGG | - | chr1.4:6430983-6431002 | None:intergenic | 35.0% | |
| ! | AAGAGAATCAAAGAGTGTGT+CGG | + | chr1.4:6430251-6430270 | MS.gene52385:CDS | 35.0% |
| ! | AAGAGAGACAAAGTGTTTGT+GGG | - | chr1.4:6429624-6429643 | None:intergenic | 35.0% |
| ! | AGCAATTTTCCCTCAACATT+TGG | - | chr1.4:6430390-6430409 | None:intergenic | 35.0% |
| ! | ATCCATCTTAAGTTGTGTTG+TGG | - | chr1.4:6430019-6430038 | None:intergenic | 35.0% |
| ! | CAACTTAAGATGGATTTGTC+TGG | + | chr1.4:6430024-6430043 | MS.gene52385:CDS | 35.0% |
| ! | CATTTTTCATGTGGATTTCG+GGG | + | chr1.4:6429386-6429405 | MS.gene52385:intron | 35.0% |
| ! | CTATCTAAGGCTTTATGCTT+TGG | + | chr1.4:6431039-6431058 | MS.gene52385:intron | 35.0% |
| ! | GACTTGTGAATTTTGTGGTT+TGG | + | chr1.4:6428595-6428614 | MS.gene52385:intron | 35.0% |
| ! | GCATTTTTCATGTGGATTTC+GGG | + | chr1.4:6429385-6429404 | MS.gene52385:intron | 35.0% |
| ! | GTTATCTCTATTGGCCATTT+TGG | + | chr1.4:6428252-6428271 | MS.gene52385:CDS | 35.0% |
| ! | TACATGCAAGTTTGAGACTA+GGG | + | chr1.4:6428690-6428709 | MS.gene52385:intron | 35.0% |
| ! | TCTTCAAACCCTTTTTGATG+AGG | + | chr1.4:6428537-6428556 | MS.gene52385:intron | 35.0% |
| ! | TTACATGCAAGTTTGAGACT+AGG | + | chr1.4:6428689-6428708 | MS.gene52385:intron | 35.0% |
| ! | TTGCATTTTAGGCACTAAGT+TGG | - | chr1.4:6429761-6429780 | None:intergenic | 35.0% |
| !! | AACATCAGTTGCTAGTCTTA+GGG | - | chr1.4:6429854-6429873 | None:intergenic | 35.0% |
| !! | ATTGGCCATTTTGGAAGTTA+AGG | + | chr1.4:6428261-6428280 | MS.gene52385:CDS | 35.0% |
| !! | CAGATTTTGAAGAGAATACC+AGG | + | chr1.4:6430102-6430121 | MS.gene52385:CDS | 35.0% |
| !! | CTTATTGGCTCTTGAAGAAT+AGG | - | chr1.4:6430081-6430100 | None:intergenic | 35.0% |
| !! | GATTAGTGGGTTATCTCTAT+TGG | + | chr1.4:6428243-6428262 | MS.gene52385:CDS | 35.0% |
| !! | TAACATCAGTTGCTAGTCTT+AGG | - | chr1.4:6429855-6429874 | None:intergenic | 35.0% |
| !! | TTGTGAATTTTGTGGTTTGG+TGG | + | chr1.4:6428598-6428617 | MS.gene52385:intron | 35.0% |
| !!! | CCATCACAATTTTTTTGGAG+GGG | + | chr1.4:6430794-6430813 | MS.gene52385:intron | 35.0% |
| !!! | CCCATCACAATTTTTTTGGA+GGG | + | chr1.4:6430793-6430812 | MS.gene52385:intron | 35.0% |
| !!! | CTCCTTTTCTTTTAGTTCTC+TGG | + | chr1.4:6428448-6428467 | MS.gene52385:intron | 35.0% |
| !!! | TCCCATCACAATTTTTTTGG+AGG | + | chr1.4:6430792-6430811 | MS.gene52385:intron | 35.0% |
| !!! | TGTGAATTTTGTGGTTTGGT+GGG | + | chr1.4:6428599-6428618 | MS.gene52385:intron | 35.0% |
| !!! | TTTTAGTTCTCTGGTTGAGA+AGG | + | chr1.4:6428457-6428476 | MS.gene52385:intron | 35.0% |
| AAATAGCAGCCATCATGACT+AGG | - | chr1.4:6428574-6428593 | None:intergenic | 40.0% | |
| AGGTGATTAAAGAGGCAATG+AGG | + | chr1.4:6430588-6430607 | MS.gene52385:intron | 40.0% | |
| CAGAAAAATTCAAACCGGAG+AGG | + | chr1.4:6431131-6431150 | MS.gene52385:CDS | 40.0% | |
| CCCCTCCAAAAAAATTGTGA+TGG | - | chr1.4:6430797-6430816 | None:intergenic | 40.0% | |
| CTCCACAACACAACTTAAGA+TGG | + | chr1.4:6430014-6430033 | MS.gene52385:CDS | 40.0% | |
| GCTAGTCATCCAAATGTTGA+GGG | + | chr1.4:6430378-6430397 | MS.gene52385:CDS | 40.0% | |
| GCTTTATGCTTTGGTATGAC+AGG | + | chr1.4:6431048-6431067 | MS.gene52385:intron | 40.0% | |
| GTTATTGGAGATGCAGCATT+TGG | + | chr1.4:6429871-6429890 | MS.gene52385:CDS | 40.0% | |
| TGCTAGTCATCCAAATGTTG+AGG | + | chr1.4:6430377-6430396 | MS.gene52385:CDS | 40.0% | |
| TGGAAGTTAAGGAAAGTTCC+AGG | + | chr1.4:6428272-6428291 | MS.gene52385:CDS | 40.0% | |
| TTTGGTATGACAGGGAACAT+GGG | + | chr1.4:6431057-6431076 | MS.gene52385:intron | 40.0% | |
| ! | ACTAAGTTGGCTAAGTGTGA+TGG | - | chr1.4:6429748-6429767 | None:intergenic | 40.0% |
| ! | AGAGAGACAAAGTGTTTGTG+GGG | - | chr1.4:6429623-6429642 | None:intergenic | 40.0% |
| ! | ATTTTCCAATCCATAGTGCC+TGG | - | chr1.4:6430123-6430142 | None:intergenic | 40.0% |
| ! | GAAGAGAGACAAAGTGTTTG+TGG | - | chr1.4:6429625-6429644 | None:intergenic | 40.0% |
| ! | GAATGCATGCTCTCTCTTTT+TGG | + | chr1.4:6429185-6429204 | MS.gene52385:intron | 40.0% |
| ! | GCAGAGCTTTGTAAAGAAGT+GGG | + | chr1.4:6428951-6428970 | MS.gene52385:CDS | 40.0% |
| ! | GTTCTAGTGGATATTGCTTG+TGG | + | chr1.4:6428627-6428646 | MS.gene52385:intron | 40.0% |
| ! | TGCAGAGCTTTGTAAAGAAG+TGG | + | chr1.4:6428950-6428969 | MS.gene52385:CDS | 40.0% |
| !! | CTCTCCGGTTTGAATTTTTC+TGG | - | chr1.4:6431133-6431152 | None:intergenic | 40.0% |
| !! | CTTCGAGAGATTGATGGATT+TGG | + | chr1.4:6430408-6430427 | MS.gene52385:CDS | 40.0% |
| !! | GTTCTTCCATCCTGTTTTGA+CGG | + | chr1.4:6430956-6430975 | MS.gene52385:intron | 40.0% |
| ACATGGGTATGGTTAGCACT+TGG | + | chr1.4:6431073-6431092 | MS.gene52385:CDS | 45.0% | |
| AGCAATATGGCCCTATCTAC+AGG | + | chr1.4:6428372-6428391 | MS.gene52385:CDS | 45.0% | |
| AGGAGGTTACCTTCTTCCAA+AGG | + | chr1.4:6430664-6430683 | MS.gene52385:intron | 45.0% | |
| AGTTGGCTAAGTGTGATGGT+TGG | - | chr1.4:6429744-6429763 | None:intergenic | 45.0% | |
| CAAGGACTGAGAAAACGTCA+GGG | - | chr1.4:6428349-6428368 | None:intergenic | 45.0% | |
| CCACATGTCACATGTTTACG+TGG | - | chr1.4:6429594-6429613 | None:intergenic | 45.0% | |
| CCACGTAAACATGTGACATG+TGG | + | chr1.4:6429591-6429610 | MS.gene52385:intron | 45.0% | |
| CTTTGGTATGACAGGGAACA+TGG | + | chr1.4:6431056-6431075 | MS.gene52385:intron | 45.0% | |
| GAACTTCAGCCTAGTCATGA+TGG | + | chr1.4:6428562-6428581 | MS.gene52385:intron | 45.0% | |
| GAAGAGAATACCAGGCACTA+TGG | + | chr1.4:6430110-6430129 | MS.gene52385:CDS | 45.0% | |
| GAATACCAGGCACTATGGAT+TGG | + | chr1.4:6430115-6430134 | MS.gene52385:CDS | 45.0% | |
| GATGTTTCTCTTGCAACCAG+TGG | - | chr1.4:6430629-6430648 | None:intergenic | 45.0% | |
| GATTTACACTGTCTCTCCAC+TGG | + | chr1.4:6430610-6430629 | MS.gene52385:CDS | 45.0% | |
| GCTTCTCCTCTTCACCAAAA+AGG | + | chr1.4:6429026-6429045 | MS.gene52385:CDS | 45.0% | |
| GGGCCATACTTTGCTAACAA+TGG | - | chr1.4:6428329-6428348 | None:intergenic | 45.0% | |
| GTAGATAGGGCCATATTGCT+TGG | - | chr1.4:6428372-6428391 | None:intergenic | 45.0% | |
| TATGACAGGGAACATGGGTA+TGG | + | chr1.4:6431062-6431081 | MS.gene52385:intron | 45.0% | |
| TCAGTCCTTGCCAAGCAATA+TGG | + | chr1.4:6428359-6428378 | MS.gene52385:CDS | 45.0% | |
| TGAAGAGGAGAAGCAGAGAT+AGG | - | chr1.4:6429020-6429039 | None:intergenic | 45.0% | |
| TGCCATTCAACTTAGTGGCT+AGG | - | chr1.4:6429420-6429439 | None:intergenic | 45.0% | |
| TTTCATGTGGATTTCGGGGT+GGG | + | chr1.4:6429390-6429409 | MS.gene52385:intron | 45.0% | |
| ! | ACAAAGTGTTTGTGGGGTCT+AGG | - | chr1.4:6429617-6429636 | None:intergenic | 45.0% |
| ! | AGCCTAGCCACTAAGTTGAA+TGG | + | chr1.4:6429415-6429434 | MS.gene52385:intron | 45.0% |
| ! | GATTTGGCTTCTCGCAACTT+AGG | + | chr1.4:6430840-6430859 | MS.gene52385:intron | 45.0% |
| ! | TTTTCATGTGGATTTCGGGG+TGG | + | chr1.4:6429389-6429408 | MS.gene52385:intron | 45.0% |
| !! | AATGGAAGGTGTCCTACAAG+AGG | - | chr1.4:6428311-6428330 | None:intergenic | 45.0% |
| !! | GCAGCATTTGGTGTCAACTT+TGG | + | chr1.4:6429883-6429902 | MS.gene52385:CDS | 45.0% |
| !! | TATTTACATATTTATAATTA+AGG | + | chr1.4:6429067-6429086 | MS.gene52385:intron | 5.0% |
| AAAAGATGTGGTAGCCGAGC+CGG | - | chr1.4:6430331-6430350 | None:intergenic | 50.0% | |
| AGGAGAAGCAGAGATAGGAG+AGG | - | chr1.4:6429015-6429034 | None:intergenic | 50.0% | |
| CTACAAGAGGCAGAGATGGT+GGG | - | chr1.4:6428298-6428317 | None:intergenic | 50.0% | |
| GCAAGGACTGAGAAAACGTC+AGG | - | chr1.4:6428350-6428369 | None:intergenic | 50.0% | |
| GCAATCTGGACCGTCAAAAC+AGG | - | chr1.4:6430969-6430988 | None:intergenic | 50.0% | |
| GGAGAAGCAGAGATAGGAGA+GGG | - | chr1.4:6429014-6429033 | None:intergenic | 50.0% | |
| GGAGAGGGAATGCTTCTGTT+TGG | - | chr1.4:6428999-6429018 | None:intergenic | 50.0% | |
| TAGGGCCATATTGCTTGGCA+AGG | - | chr1.4:6428367-6428386 | None:intergenic | 50.0% | |
| TCTGGACCGTCAAAACAGGA+TGG | - | chr1.4:6430965-6430984 | None:intergenic | 50.0% | |
| TGTCCTACAAGAGGCAGAGA+TGG | - | chr1.4:6428302-6428321 | None:intergenic | 50.0% | |
| TTCATGTGGATTTCGGGGTG+GGG | + | chr1.4:6429391-6429410 | MS.gene52385:intron | 50.0% | |
| ! | TGAACACTTACTTGCCGGCT+CGG | + | chr1.4:6430314-6430333 | MS.gene52385:CDS | 50.0% |
| ! | TTGGTGGGTCAGTGTTCTAG+TGG | + | chr1.4:6428614-6428633 | MS.gene52385:intron | 50.0% |
| CCACCATCTCTGCCTCTTGT+AGG | + | chr1.4:6428296-6428315 | MS.gene52385:CDS | 55.0% | |
| CCTACAAGAGGCAGAGATGG+TGG | - | chr1.4:6428299-6428318 | None:intergenic | 55.0% | |
| !! | AGAGGCAGAGATGGTGGGCC+TGG | - | chr1.4:6428293-6428312 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 6428228 | 6431158 | 6428228 | ID=MS.gene52385 |
| chr1.4 | mRNA | 6428228 | 6431158 | 6428228 | ID=MS.gene52385.t1;Parent=MS.gene52385 |
| chr1.4 | exon | 6428228 | 6428393 | 6428228 | ID=MS.gene52385.t1.exon1;Parent=MS.gene52385.t1 |
| chr1.4 | CDS | 6428228 | 6428393 | 6428228 | ID=cds.MS.gene52385.t1;Parent=MS.gene52385.t1 |
| chr1.4 | exon | 6428911 | 6429063 | 6428911 | ID=MS.gene52385.t1.exon2;Parent=MS.gene52385.t1 |
| chr1.4 | CDS | 6428911 | 6429063 | 6428911 | ID=cds.MS.gene52385.t1;Parent=MS.gene52385.t1 |
| chr1.4 | exon | 6429696 | 6430491 | 6429696 | ID=MS.gene52385.t1.exon3;Parent=MS.gene52385.t1 |
| chr1.4 | CDS | 6429696 | 6430491 | 6429696 | ID=cds.MS.gene52385.t1;Parent=MS.gene52385.t1 |
| chr1.4 | exon | 6430590 | 6430668 | 6430590 | ID=MS.gene52385.t1.exon4;Parent=MS.gene52385.t1 |
| chr1.4 | CDS | 6430590 | 6430668 | 6430590 | ID=cds.MS.gene52385.t1;Parent=MS.gene52385.t1 |
| chr1.4 | exon | 6431070 | 6431158 | 6431070 | ID=MS.gene52385.t1.exon5;Parent=MS.gene52385.t1 |
| chr1.4 | CDS | 6431070 | 6431158 | 6431070 | ID=cds.MS.gene52385.t1;Parent=MS.gene52385.t1 |
| Gene Sequence |
| Protein sequence |
