AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene056550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056550.t1 MTR_8g071900 96.888 482 15 0 2 483 1 482 0.0 980
MS.gene056550.t1 MTR_5g026360 75.153 491 108 5 2 483 1 486 0.0 749
MS.gene056550.t1 MTR_8g068840 46.327 490 229 13 15 482 7 484 6.77e-136 401
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056550.t1 AT4G19460 64.242 495 162 6 2 483 24 516 0.0 647
MS.gene056550.t1 AT1G73160 49.660 441 204 8 50 483 52 481 6.91e-154 447
MS.gene056550.t1 AT5G59070 47.379 477 199 12 43 480 38 501 2.31e-137 405

Find 110 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTTGGATTTGTTGTTTA+AGG 0.138348 8.3:+31094510 None:intergenic
CGGATTCACCTTCATGAAAA+TGG 0.183373 8.3:+31094095 None:intergenic
TGAAGAGAACAATGAATAAA+AGG 0.207439 8.3:+31094452 None:intergenic
ATTCCTTGGAATTCCAATTT+TGG 0.210495 8.3:+31093643 None:intergenic
AGGAAATTTAGAACCAAAAT+TGG 0.211055 8.3:-31093656 MS.gene056550:CDS
GCACTCTTCTTGTAGGAATT+TGG 0.215738 8.3:+31093735 None:intergenic
TGAAGGGGAGTTTGGTTTCT+TGG 0.222371 8.3:+31094495 None:intergenic
GGAAACCAAGTTCTTGTTCT+AGG 0.232719 8.3:-31093467 MS.gene056550:CDS
CCTTCATGAAAATGGATAAA+AGG 0.253935 8.3:+31094103 None:intergenic
TATTTGATAGTTGCTGGTTC+TGG 0.291225 8.3:-31093518 MS.gene056550:CDS
AAGATCACCTGACCAAGTTT+TGG 0.306569 8.3:+31094357 None:intergenic
TTCTCTAGAAAATGGCCTAT+TGG 0.310215 8.3:-31094256 MS.gene056550:CDS
TCAAGGTTTCCAAGCATTAA+AGG 0.315496 8.3:-31093314 MS.gene056550:CDS
GGAAACAGGTACAAGGATTT+AGG 0.322504 8.3:-31093488 MS.gene056550:CDS
GATGAGTGGGAAGCCTCTTT+TGG 0.327010 8.3:-31093339 MS.gene056550:CDS
GCAACTATCAAATAAACATT+TGG 0.327090 8.3:+31093527 None:intergenic
TAAAGCATTGGAACAATATC+AGG 0.329940 8.3:-31094056 MS.gene056550:CDS
TTTCAAATCTTGTAGTATCT+TGG 0.333393 8.3:-31093958 MS.gene056550:CDS
AATGTTTATTTGATAGTTGC+TGG 0.333546 8.3:-31093524 MS.gene056550:CDS
TTGTTGAAACCAGGTGAAAT+AGG 0.336844 8.3:+31093869 None:intergenic
AGGGCTTGATCTTACTTTGA+TGG 0.338305 8.3:-31093369 MS.gene056550:CDS
CTGCTTCAAGTGCCTCCAAT+AGG 0.361091 8.3:+31093237 None:intergenic
AAGCATTAAAGGTACTCTTT+TGG 0.369662 8.3:-31093303 MS.gene056550:CDS
CTTCCCAACAATCCAAAACT+TGG 0.375866 8.3:-31094369 MS.gene056550:CDS
AGAGTGCATGTGATTGTTAA+TGG 0.375953 8.3:-31093719 MS.gene056550:CDS
AGTTTAGTACTTGGTGTAGC+AGG 0.387644 8.3:-31093617 MS.gene056550:CDS
GGTGTTGATGATGATGAGTT+TGG 0.387915 8.3:-31093698 MS.gene056550:CDS
GTTTGGAGAAGATGCTGAAT+TGG 0.391518 8.3:-31093681 MS.gene056550:CDS
TCCTAATGTAGAGTCCCTAT+TGG 0.412693 8.3:-31093252 MS.gene056550:CDS
GCATGGCGTTCCATGCCACC+TGG 0.416172 8.3:+31094226 None:intergenic
TGCTTCATGAAGCATATTCA+AGG 0.416760 8.3:-31093565 MS.gene056550:CDS
CCAGGTGAAATAGGTTCATC+AGG 0.418764 8.3:+31093878 None:intergenic
GTTCTGGACCATGGGGAAAC+AGG 0.421798 8.3:-31093502 MS.gene056550:CDS
TTTATTGTATCTCCACTTGT+CGG 0.431325 8.3:+31094075 None:intergenic
AAAAGAGTACCTTTAATGCT+TGG 0.433398 8.3:+31093305 None:intergenic
AGTACTAAACTTGCATTCCT+TGG 0.434042 8.3:+31093629 None:intergenic
CTTATCTCATTCAAAACCTT+AGG 0.435386 8.3:+31093827 None:intergenic
TCTGAATGAATAACATCAAA+TGG 0.436235 8.3:+31094016 None:intergenic
CAACTATCAAATAAACATTT+GGG 0.437055 8.3:+31093528 None:intergenic
CTTACAAGGTGTTATTCCTA+AGG 0.438410 8.3:-31093843 MS.gene056550:CDS
CCACCTGGGGTGGTACCAAT+AGG 0.438791 8.3:+31094241 None:intergenic
ATCACATGCACTCTTCTTGT+AGG 0.440984 8.3:+31093728 None:intergenic
GGAAACCTTGATGCCAAAAG+AGG 0.456922 8.3:+31093326 None:intergenic
TGCTTCAAGTGCCTCCAATA+GGG 0.458044 8.3:+31093238 None:intergenic
TCCAATAGGGACTCTACATT+AGG 0.459828 8.3:+31093251 None:intergenic
TTTGGAGAAGATGCTGAATT+GGG 0.460751 8.3:-31093680 MS.gene056550:CDS
CAACAATCCAAAACTTGGTC+AGG 0.467982 8.3:-31094364 MS.gene056550:CDS
GAAGAGAACAATGAATAAAA+GGG 0.477676 8.3:+31094453 None:intergenic
AGGAATGCAAGTTTAGTACT+TGG 0.477726 8.3:-31093626 MS.gene056550:CDS
TTACTTTAGCTGAATTTGCA+TGG 0.499438 8.3:-31094336 MS.gene056550:CDS
GAACCAAAATTGGAATTCCA+AGG 0.499871 8.3:-31093646 MS.gene056550:CDS
TTGATCCTAGAACAAGAACT+TGG 0.499984 8.3:+31093462 None:intergenic
TGGCCTATTGGTACCACCCC+AGG 0.504477 8.3:-31094244 MS.gene056550:CDS
CACTTCCTCATTATGTAGCT+AGG 0.506156 8.3:-31093985 MS.gene056550:CDS
CCTGATGAACCTATTTCACC+TGG 0.516853 8.3:-31093878 MS.gene056550:CDS
TAAAATGCTTTCAACATGGA+AGG 0.518265 8.3:+31093434 None:intergenic
AGCCCTTGAGGCCTAAGTGT+TGG 0.519619 8.3:+31093386 None:intergenic
TGCAAATAGAAGTTGTGGTG+GGG 0.527161 8.3:+31094401 None:intergenic
CCTCTCCTTGCTAGCCTCTG+TGG 0.528221 8.3:+31093200 None:intergenic
TTTGGATTGTTGGGAAGCAA+AGG 0.528822 8.3:+31094375 None:intergenic
TAGTTGCTGGTTCTGGACCA+TGG 0.529632 8.3:-31093511 MS.gene056550:CDS
TGGTACCACCCCAGGTGGCA+TGG 0.533887 8.3:-31094236 MS.gene056550:CDS
GCGTTCCATGCCACCTGGGG+TGG 0.535238 8.3:+31094231 None:intergenic
GCAAATAGAAGTTGTGGTGG+GGG 0.538698 8.3:+31094402 None:intergenic
CATGGCGTTCCATGCCACCT+GGG 0.538759 8.3:+31094227 None:intergenic
GGTTTCAACAATAGCTTACA+AGG 0.542677 8.3:-31093857 MS.gene056550:CDS
CTTGAAGCAGTGGTAAAAGA+TGG 0.544526 8.3:-31093224 MS.gene056550:CDS
ATGGACCACAGAGGCTAGCA+AGG 0.545711 8.3:-31093205 MS.gene056550:CDS
ACATTGAGGCAGCATATTCA+CGG 0.549085 8.3:+31093168 None:intergenic
TCCTTGTACCTGTTTCCCCA+TGG 0.550684 8.3:+31093494 None:intergenic
TAATGTAGAGTCCCTATTGG+AGG 0.552827 8.3:-31093249 MS.gene056550:CDS
AATCCAACACTTAGGCCTCA+AGG 0.556259 8.3:-31093389 MS.gene056550:CDS
GTTTAGTACTTGGTGTAGCA+GGG 0.557485 8.3:-31093616 MS.gene056550:CDS
CAAGGGTAGATACAAAATGT+AGG 0.561364 8.3:+31093089 None:intergenic
AGTTGCTGGTTCTGGACCAT+GGG 0.561648 8.3:-31093510 MS.gene056550:CDS
GTGCAAATAGAAGTTGTGGT+GGG 0.562861 8.3:+31094400 None:intergenic
AGATTCCTAGCTACATAATG+AGG 0.569582 8.3:+31093980 None:intergenic
ATCCAACACTTAGGCCTCAA+GGG 0.569701 8.3:-31093388 MS.gene056550:CDS
GTGGAGATACAATAAAGCAT+TGG 0.571391 8.3:-31094068 MS.gene056550:CDS
GAGAAGATGCTGAATTGGGA+AGG 0.579306 8.3:-31093676 MS.gene056550:CDS
CACACTGCTTTAGCTCAAAG+AGG 0.588865 8.3:-31094193 MS.gene056550:CDS
ATAGTTGTGGTGATATGCTA+AGG 0.588981 8.3:-31093766 MS.gene056550:CDS
GAATATGCTTCATGAAGCAA+AGG 0.590704 8.3:+31093569 None:intergenic
TTGAGCTAAAGCAGTGTGGA+GGG 0.593536 8.3:+31094198 None:intergenic
GGGAGATTAGTTAAAGACAA+AGG 0.593695 8.3:-31093596 MS.gene056550:CDS
CAGTGTGGAGGGTGTAAGCA+TGG 0.595982 8.3:+31094209 None:intergenic
GCTTGATCTTACTTTGATGG+AGG 0.601103 8.3:-31093366 MS.gene056550:CDS
ATGGCGTTCCATGCCACCTG+GGG 0.602494 8.3:+31094228 None:intergenic
ATGAAGGTGAATCCGACAAG+TGG 0.608022 8.3:-31094087 MS.gene056550:CDS
AATCTTGTAGTATCTTGGCA+TGG 0.608621 8.3:-31093953 MS.gene056550:CDS
TGTAAGCTATTGTTGAAACC+AGG 0.610612 8.3:+31093860 None:intergenic
ATTGGAGGCACTTGAAGCAG+TGG 0.613871 8.3:-31093234 MS.gene056550:CDS
TTTGAGCTAAAGCAGTGTGG+AGG 0.615128 8.3:+31094197 None:intergenic
GGATTGTTGGGAAGCAAAGG+TGG 0.619179 8.3:+31094378 None:intergenic
ACCATGGGGAAACAGGTACA+AGG 0.622933 8.3:-31093495 MS.gene056550:CDS
TGATGGAGGCTATGATGAGT+GGG 0.626959 8.3:-31093352 MS.gene056550:CDS
CTCTTTGAGCTAAAGCAGTG+TGG 0.626998 8.3:+31094194 None:intergenic
AGATGGCATTAGCATATGAG+AGG 0.637476 8.3:-31093133 MS.gene056550:CDS
GGTGCAAATAGAAGTTGTGG+TGG 0.639655 8.3:+31094399 None:intergenic
CCACAGAGGCTAGCAAGGAG+AGG 0.642590 8.3:-31093200 MS.gene056550:CDS
TTGATGGAGGCTATGATGAG+TGG 0.649365 8.3:-31093353 MS.gene056550:CDS
ACTTCAATCAAAACTCAACA+AGG 0.658763 8.3:-31094130 MS.gene056550:CDS
ATTATAAAATGCTTTCAACA+TGG 0.659339 8.3:+31093430 None:intergenic
GTTGCTATTAGTGATAGTTG+TGG 0.667338 8.3:-31093779 MS.gene056550:CDS
CCTATTGGTACCACCCCAGG+TGG 0.674831 8.3:-31094241 MS.gene056550:CDS
AAAGTAAGATCAAGCCCTTG+AGG 0.685959 8.3:+31093374 None:intergenic
TAGTTGTGGTGATATGCTAA+GGG 0.686145 8.3:-31093765 MS.gene056550:CDS
GGTGGTGCAAATAGAAGTTG+TGG 0.710566 8.3:+31094396 None:intergenic
GTTGCTGGTTCTGGACCATG+GGG 0.713612 8.3:-31093509 MS.gene056550:CDS
TGGTAAAAGATGGACCACAG+AGG 0.763177 8.3:-31093214 MS.gene056550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAGAAATAAAAATTTGAA+GGG + chr8.3:31093129-31093148 None:intergenic 15.0%
!! ATTATAAAATGCTTTCAACA+TGG + chr8.3:31094178-31094197 None:intergenic 20.0%
!! CAACTATCAAATAAACATTT+GGG + chr8.3:31094080-31094099 None:intergenic 20.0%
!! GAAGAAATAAAAATTTGAAG+GGG + chr8.3:31093128-31093147 None:intergenic 20.0%
!! GTGAAGAAATAAAAATTTGA+AGG + chr8.3:31093130-31093149 None:intergenic 20.0%
! AATGTTTACAGCAAAAAAGA+TGG - chr8.3:31094455-31094474 MS.gene056550:CDS 25.0%
! GAAGAGAACAATGAATAAAA+GGG + chr8.3:31093155-31093174 None:intergenic 25.0%
! GCAACTATCAAATAAACATT+TGG + chr8.3:31094081-31094100 None:intergenic 25.0%
! TCTGAATGAATAACATCAAA+TGG + chr8.3:31093592-31093611 None:intergenic 25.0%
! TGAAGAGAACAATGAATAAA+AGG + chr8.3:31093156-31093175 None:intergenic 25.0%
! TTTCAAATCTTGTAGTATCT+TGG - chr8.3:31093647-31093666 MS.gene056550:CDS 25.0%
!! AATGTTTATTTGATAGTTGC+TGG - chr8.3:31094081-31094100 MS.gene056550:CDS 25.0%
!! AGGAAATTTAGAACCAAAAT+TGG - chr8.3:31093949-31093968 MS.gene056550:CDS 25.0%
!! TTTGCAATCAAGTATTTTTC+AGG - chr8.3:31093690-31093709 MS.gene056550:CDS 25.0%
!!! ATTGAAGTTTTTTCATCTTG+TGG + chr8.3:31093463-31093482 None:intergenic 25.0%
!!! TTTCTTGGATTTGTTGTTTA+AGG + chr8.3:31093098-31093117 None:intergenic 25.0%
ACTTCAATCAAAACTCAACA+AGG - chr8.3:31093475-31093494 MS.gene056550:CDS 30.0%
CCTTCATGAAAATGGATAAA+AGG + chr8.3:31093505-31093524 None:intergenic 30.0%
CTTATCTCATTCAAAACCTT+AGG + chr8.3:31093781-31093800 None:intergenic 30.0%
TAAAAATTTGAAGGGGAGTT+TGG + chr8.3:31093121-31093140 None:intergenic 30.0%
TAAAATGCTTTCAACATGGA+AGG + chr8.3:31094174-31094193 None:intergenic 30.0%
TTACTTTAGCTGAATTTGCA+TGG - chr8.3:31093269-31093288 MS.gene056550:CDS 30.0%
TTTATTGTATCTCCACTTGT+CGG + chr8.3:31093533-31093552 None:intergenic 30.0%
! ATTCCTTGGAATTCCAATTT+TGG + chr8.3:31093965-31093984 None:intergenic 30.0%
! CCTTTTATCCATTTTCATGA+AGG - chr8.3:31093502-31093521 MS.gene056550:CDS 30.0%
! TTTTTGTCAATCCAACACTT+AGG - chr8.3:31094208-31094227 MS.gene056550:CDS 30.0%
!! AAAAGAGTACCTTTAATGCT+TGG + chr8.3:31094303-31094322 None:intergenic 30.0%
!! TAAAGCATTGGAACAATATC+AGG - chr8.3:31093549-31093568 MS.gene056550:CDS 30.0%
!!! AAGCATTAAAGGTACTCTTT+TGG - chr8.3:31094302-31094321 MS.gene056550:CDS 30.0%
!!! CTTTTTTGCTGTAAACATTG+AGG + chr8.3:31094454-31094473 None:intergenic 30.0%
!!! TTGCTGTTTTCTCTAGAAAA+TGG - chr8.3:31093341-31093360 MS.gene056550:CDS 30.0%
AATCTTGTAGTATCTTGGCA+TGG - chr8.3:31093652-31093671 MS.gene056550:CDS 35.0%
AGAGTGCATGTGATTGTTAA+TGG - chr8.3:31093886-31093905 MS.gene056550:CDS 35.0%
AGATTCCTAGCTACATAATG+AGG + chr8.3:31093628-31093647 None:intergenic 35.0%
AGGAATGCAAGTTTAGTACT+TGG - chr8.3:31093979-31093998 MS.gene056550:CDS 35.0%
AGTACTAAACTTGCATTCCT+TGG + chr8.3:31093979-31093998 None:intergenic 35.0%
ATAGTTGTGGTGATATGCTA+AGG - chr8.3:31093839-31093858 MS.gene056550:CDS 35.0%
CAAGGGTAGATACAAAATGT+AGG + chr8.3:31094519-31094538 None:intergenic 35.0%
GAACCAAAATTGGAATTCCA+AGG - chr8.3:31093959-31093978 MS.gene056550:CDS 35.0%
GAATATGCTTCATGAAGCAA+AGG + chr8.3:31094039-31094058 None:intergenic 35.0%
GGTTTCAACAATAGCTTACA+AGG - chr8.3:31093748-31093767 MS.gene056550:CDS 35.0%
GTGGAGATACAATAAAGCAT+TGG - chr8.3:31093537-31093556 MS.gene056550:CDS 35.0%
TAGTTGTGGTGATATGCTAA+GGG - chr8.3:31093840-31093859 MS.gene056550:CDS 35.0%
TCAAGGTTTCCAAGCATTAA+AGG - chr8.3:31094291-31094310 MS.gene056550:CDS 35.0%
TGCTTCATGAAGCATATTCA+AGG - chr8.3:31094040-31094059 MS.gene056550:CDS 35.0%
TGTAAGCTATTGTTGAAACC+AGG + chr8.3:31093748-31093767 None:intergenic 35.0%
TTGATCCTAGAACAAGAACT+TGG + chr8.3:31094146-31094165 None:intergenic 35.0%
TTGTTGAAACCAGGTGAAAT+AGG + chr8.3:31093739-31093758 None:intergenic 35.0%
TTTGGAGAAGATGCTGAATT+GGG - chr8.3:31093925-31093944 MS.gene056550:CDS 35.0%
! GAGAAAACAGCAATTTTGAG+AGG + chr8.3:31093334-31093353 None:intergenic 35.0%
! GGGAGATTAGTTAAAGACAA+AGG - chr8.3:31094009-31094028 MS.gene056550:CDS 35.0%
! GTTGCTATTAGTGATAGTTG+TGG - chr8.3:31093826-31093845 MS.gene056550:CDS 35.0%
! TTCTCTAGAAAATGGCCTAT+TGG - chr8.3:31093349-31093368 MS.gene056550:CDS 35.0%
!! CTTACAAGGTGTTATTCCTA+AGG - chr8.3:31093762-31093781 MS.gene056550:CDS 35.0%
!! TATTTGATAGTTGCTGGTTC+TGG - chr8.3:31094087-31094106 MS.gene056550:CDS 35.0%
!!! CTTTTGGTTGATGATGAGTA+TGG - chr8.3:31094318-31094337 MS.gene056550:CDS 35.0%
!!! TGACCAAGTTTTGGATTGTT+GGG + chr8.3:31093242-31093261 None:intergenic 35.0%
AAAGTAAGATCAAGCCCTTG+AGG + chr8.3:31094234-31094253 None:intergenic 40.0%
ACATTGAGGCAGCATATTCA+CGG + chr8.3:31094440-31094459 None:intergenic 40.0%
AGATGGCATTAGCATATGAG+AGG - chr8.3:31094472-31094491 MS.gene056550:CDS 40.0%
AGGGCTTGATCTTACTTTGA+TGG - chr8.3:31094236-31094255 MS.gene056550:CDS 40.0%
ATCACATGCACTCTTCTTGT+AGG + chr8.3:31093880-31093899 None:intergenic 40.0%
CAACAATCCAAAACTTGGTC+AGG - chr8.3:31093241-31093260 MS.gene056550:CDS 40.0%
CACTTCCTCATTATGTAGCT+AGG - chr8.3:31093620-31093639 MS.gene056550:CDS 40.0%
CGGATTCACCTTCATGAAAA+TGG + chr8.3:31093513-31093532 None:intergenic 40.0%
CTTCCCAACAATCCAAAACT+TGG - chr8.3:31093236-31093255 MS.gene056550:CDS 40.0%
CTTGAAGCAGTGGTAAAAGA+TGG - chr8.3:31094381-31094400 MS.gene056550:CDS 40.0%
GCACTCTTCTTGTAGGAATT+TGG + chr8.3:31093873-31093892 None:intergenic 40.0%
GCTTGATCTTACTTTGATGG+AGG - chr8.3:31094239-31094258 MS.gene056550:CDS 40.0%
GGAAACAGGTACAAGGATTT+AGG - chr8.3:31094117-31094136 MS.gene056550:CDS 40.0%
GGAAACCAAGTTCTTGTTCT+AGG - chr8.3:31094138-31094157 MS.gene056550:CDS 40.0%
GTGCAAATAGAAGTTGTGGT+GGG + chr8.3:31093208-31093227 None:intergenic 40.0%
GTTTGGAGAAGATGCTGAAT+TGG - chr8.3:31093924-31093943 MS.gene056550:CDS 40.0%
TAATGTAGAGTCCCTATTGG+AGG - chr8.3:31094356-31094375 MS.gene056550:CDS 40.0%
TCCAATAGGGACTCTACATT+AGG + chr8.3:31094357-31094376 None:intergenic 40.0%
TCCTAATGTAGAGTCCCTAT+TGG - chr8.3:31094353-31094372 MS.gene056550:CDS 40.0%
TGCAAATAGAAGTTGTGGTG+GGG + chr8.3:31093207-31093226 None:intergenic 40.0%
TTTGGATTGTTGGGAAGCAA+AGG + chr8.3:31093233-31093252 None:intergenic 40.0%
! AAGATCACCTGACCAAGTTT+TGG + chr8.3:31093251-31093270 None:intergenic 40.0%
!! AGTTTAGTACTTGGTGTAGC+AGG - chr8.3:31093988-31094007 MS.gene056550:CDS 40.0%
!! GCAATTTTGAGAGGTGAAAG+TGG + chr8.3:31093325-31093344 None:intergenic 40.0%
!! GGTGTTGATGATGATGAGTT+TGG - chr8.3:31093907-31093926 MS.gene056550:CDS 40.0%
!! GTTTAGTACTTGGTGTAGCA+GGG - chr8.3:31093989-31094008 MS.gene056550:CDS 40.0%
!!! CTGACCAAGTTTTGGATTGT+TGG + chr8.3:31093243-31093262 None:intergenic 40.0%
AATCCAACACTTAGGCCTCA+AGG - chr8.3:31094216-31094235 MS.gene056550:CDS 45.0%
ATCCAACACTTAGGCCTCAA+GGG - chr8.3:31094217-31094236 MS.gene056550:CDS 45.0%
ATGAAGGTGAATCCGACAAG+TGG - chr8.3:31093518-31093537 MS.gene056550:CDS 45.0%
CCAGGTGAAATAGGTTCATC+AGG + chr8.3:31093730-31093749 None:intergenic 45.0%
CCTGATGAACCTATTTCACC+TGG - chr8.3:31093727-31093746 MS.gene056550:CDS 45.0%
CTCTTTGAGCTAAAGCAGTG+TGG + chr8.3:31093414-31093433 None:intergenic 45.0%
GAGAAGATGCTGAATTGGGA+AGG - chr8.3:31093929-31093948 MS.gene056550:CDS 45.0%
GCAAATAGAAGTTGTGGTGG+GGG + chr8.3:31093206-31093225 None:intergenic 45.0%
GGAAACCTTGATGCCAAAAG+AGG + chr8.3:31094282-31094301 None:intergenic 45.0%
GGTGCAAATAGAAGTTGTGG+TGG + chr8.3:31093209-31093228 None:intergenic 45.0%
GGTGGTGCAAATAGAAGTTG+TGG + chr8.3:31093212-31093231 None:intergenic 45.0%
GTGTGGAGAAGAAAAAGAGC+TGG + chr8.3:31093184-31093203 None:intergenic 45.0%
TGATGGAGGCTATGATGAGT+GGG - chr8.3:31094253-31094272 MS.gene056550:CDS 45.0%
TGCTTCAAGTGCCTCCAATA+GGG + chr8.3:31094370-31094389 None:intergenic 45.0%
TGGTAAAAGATGGACCACAG+AGG - chr8.3:31094391-31094410 MS.gene056550:CDS 45.0%
TTGAGCTAAAGCAGTGTGGA+GGG + chr8.3:31093410-31093429 None:intergenic 45.0%
TTGATGGAGGCTATGATGAG+TGG - chr8.3:31094252-31094271 MS.gene056550:CDS 45.0%
TTTGAGCTAAAGCAGTGTGG+AGG + chr8.3:31093411-31093430 None:intergenic 45.0%
! CACACTGCTTTAGCTCAAAG+AGG - chr8.3:31093412-31093431 MS.gene056550:CDS 45.0%
! TGAAGGGGAGTTTGGTTTCT+TGG + chr8.3:31093113-31093132 None:intergenic 45.0%
ACCATGGGGAAACAGGTACA+AGG - chr8.3:31094110-31094129 MS.gene056550:CDS 50.0%
CTGCTTCAAGTGCCTCCAAT+AGG + chr8.3:31094371-31094390 None:intergenic 50.0%
GGATTGTTGGGAAGCAAAGG+TGG + chr8.3:31093230-31093249 None:intergenic 50.0%
TCCTTGTACCTGTTTCCCCA+TGG + chr8.3:31094114-31094133 None:intergenic 50.0%
! GATGAGTGGGAAGCCTCTTT+TGG - chr8.3:31094266-31094285 MS.gene056550:CDS 50.0%
! GGAAGCCTCTTTTGGCATCA+AGG - chr8.3:31094274-31094293 MS.gene056550:CDS 50.0%
!! AGTTGCTGGTTCTGGACCAT+GGG - chr8.3:31094095-31094114 MS.gene056550:CDS 50.0%
!! ATTGGAGGCACTTGAAGCAG+TGG - chr8.3:31094371-31094390 MS.gene056550:CDS 50.0%
!! TAGTTGCTGGTTCTGGACCA+TGG - chr8.3:31094094-31094113 MS.gene056550:CDS 50.0%
AGCCCTTGAGGCCTAAGTGT+TGG + chr8.3:31094222-31094241 None:intergenic 55.0%
ATGGACCACAGAGGCTAGCA+AGG - chr8.3:31094400-31094419 MS.gene056550:CDS 55.0%
! CAGTGTGGAGGGTGTAAGCA+TGG + chr8.3:31093399-31093418 None:intergenic 55.0%
! GTTCTGGACCATGGGGAAAC+AGG - chr8.3:31094103-31094122 MS.gene056550:CDS 55.0%
! TAGAAGTTGTGGTGGGGGTG+TGG + chr8.3:31093201-31093220 None:intergenic 55.0%
!! GTTGCTGGTTCTGGACCATG+GGG - chr8.3:31094096-31094115 MS.gene056550:CDS 55.0%
ATGGCGTTCCATGCCACCTG+GGG + chr8.3:31093380-31093399 None:intergenic 60.0%
CATGGCGTTCCATGCCACCT+GGG + chr8.3:31093381-31093400 None:intergenic 60.0%
CCACAGAGGCTAGCAAGGAG+AGG - chr8.3:31094405-31094424 MS.gene056550:CDS 60.0%
CCACCTGGGGTGGTACCAAT+AGG + chr8.3:31093367-31093386 None:intergenic 60.0%
CCTATTGGTACCACCCCAGG+TGG - chr8.3:31093364-31093383 MS.gene056550:CDS 60.0%
TGGCCTATTGGTACCACCCC+AGG - chr8.3:31093361-31093380 MS.gene056550:CDS 60.0%
! CCTCTCCTTGCTAGCCTCTG+TGG + chr8.3:31094408-31094427 None:intergenic 60.0%
GCATGGCGTTCCATGCCACC+TGG + chr8.3:31093382-31093401 None:intergenic 65.0%
TGGTACCACCCCAGGTGGCA+TGG - chr8.3:31093369-31093388 MS.gene056550:CDS 65.0%
GCGTTCCATGCCACCTGGGG+TGG + chr8.3:31093377-31093396 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 31093088 31094539 31093088 ID=MS.gene056550
chr8.3 mRNA 31093088 31094539 31093088 ID=MS.gene056550.t1;Parent=MS.gene056550
chr8.3 exon 31093088 31094539 31093088 ID=MS.gene056550.t1.exon1;Parent=MS.gene056550.t1
chr8.3 CDS 31093088 31094539 31093088 ID=cds.MS.gene056550.t1;Parent=MS.gene056550.t1
Gene Sequence

>MS.gene056550

ATGATGGCCTTAAACAACAAATCCAAGAAACCAAACTCCCCTTCAAATTTTTATTTCTTCACAACCCTTTTATTCATTGTTCTCTTCACAATACCAGCTCTTTTTCTTCTCCACACCCCCACCACAACTTCTATTTGCACCACCTTTGCTTCCCAACAATCCAAAACTTGGTCAGGTGATCTTACTTTAGCTGAATTTGCATGGAACAAGCTCTCATTTTCTCAACGCAAAAAACCACTTTCACCTCTCAAAATTGCTGTTTTCTCTAGAAAATGGCCTATTGGTACCACCCCAGGTGGCATGGAACGCCATGCTTACACCCTCCACACTGCTTTAGCTCAAAGAGGACATAAAGTTCATATTTTTACATCACCACAAGATGAAAAAACTTCAATCAAAACTCAACAAGGTTATCCTTTTATCCATTTTCATGAAGGTGAATCCGACAAGTGGAGATACAATAAAGCATTGGAACAATATCAGGAAGAGAACAAGAAAGAACCATTTGATGTTATTCATTCAGAAAGTGTTGCACTTCCTCATTATGTAGCTAGGAATCTTTCAAATCTTGTAGTATCTTGGCATGGAATAGCACTTGAGAGTTTGCAATCAAGTATTTTTCAGGATTTAGCTAGAAGACCTGATGAACCTATTTCACCTGGTTTCAACAATAGCTTACAAGGTGTTATTCCTAAGGTTTTGAATGAGATAAGATTCTTTAAGAGTTATGCTCATCATGTTGCTATTAGTGATAGTTGTGGTGATATGCTAAGGGATTTCTACCAAATTCCTACAAGAAGAGTGCATGTGATTGTTAATGGTGTTGATGATGATGAGTTTGGAGAAGATGCTGAATTGGGAAGGAAATTTAGAACCAAAATTGGAATTCCAAGGAATGCAAGTTTAGTACTTGGTGTAGCAGGGAGATTAGTTAAAGACAAAGGTCATCCTTTGCTTCATGAAGCATATTCAAGGCTAATAACAAAACACCCAAATGTTTATTTGATAGTTGCTGGTTCTGGACCATGGGGAAACAGGTACAAGGATTTAGGAAACCAAGTTCTTGTTCTAGGATCAATGAGTCCTTCCATGTTGAAAGCATTTTATAATGCTATTGACATTTTTGTCAATCCAACACTTAGGCCTCAAGGGCTTGATCTTACTTTGATGGAGGCTATGATGAGTGGGAAGCCTCTTTTGGCATCAAGGTTTCCAAGCATTAAAGGTACTCTTTTGGTTGATGATGAGTATGGTTACATGTTCTCTCCTAATGTAGAGTCCCTATTGGAGGCACTTGAAGCAGTGGTAAAAGATGGACCACAGAGGCTAGCAAGGAGAGGAAAAGCTTGCCGTGAATATGCTGCCTCAATGTTTACAGCAAAAAAGATGGCATTAGCATATGAGAGGTTATTTCTATGTATAAAAGATCCTACATTTTGTATCTACCCTTGA

Protein sequence

>MS.gene056550.t1

MMALNNKSKKPNSPSNFYFFTTLLFIVLFTIPALFLLHTPTTTSICTTFASQQSKTWSGDLTLAEFAWNKLSFSQRKKPLSPLKIAVFSRKWPIGTTPGGMERHAYTLHTALAQRGHKVHIFTSPQDEKTSIKTQQGYPFIHFHEGESDKWRYNKALEQYQEENKKEPFDVIHSESVALPHYVARNLSNLVVSWHGIALESLQSSIFQDLARRPDEPISPGFNNSLQGVIPKVLNEIRFFKSYAHHVAISDSCGDMLRDFYQIPTRRVHVIVNGVDDDEFGEDAELGRKFRTKIGIPRNASLVLGVAGRLVKDKGHPLLHEAYSRLITKHPNVYLIVAGSGPWGNRYKDLGNQVLVLGSMSPSMLKAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPLLASRFPSIKGTLLVDDEYGYMFSPNVESLLEALEAVVKDGPQRLARRGKACREYAASMFTAKKMALAYERLFLCIKDPTFCIYP