Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52597.t1 | XP_003624206.1 | 99.2 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 3.50E-66 | 260.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52597.t1 | O80800 | 72.2 | 133 | 27 | 3 | 1 | 130 | 1 | 126 | 4.2e-44 | 178.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52597.t1 | B7FLI7 | 99.2 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 2.5e-66 | 260.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene52597 | MS.gene012735 | PPI |
| MS.gene52597 | MS.gene43422 | PPI |
| MS.gene52597 | MS.gene95103 | PPI |
| MS.gene52597 | MS.gene042091 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52597.t1 | MTR_7g080390 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 4.37e-93 | 265 |
| MS.gene52597.t1 | MTR_7g080760 | 52.066 | 121 | 48 | 3 | 10 | 129 | 7 | 118 | 1.58e-35 | 119 |
| MS.gene52597.t1 | MTR_4g133928 | 51.948 | 77 | 37 | 0 | 54 | 130 | 47 | 123 | 3.38e-21 | 82.8 |
| MS.gene52597.t1 | MTR_0446s0010 | 58.929 | 56 | 23 | 0 | 54 | 109 | 47 | 102 | 4.84e-16 | 68.9 |
| MS.gene52597.t1 | MTR_8g099920 | 41.772 | 79 | 44 | 2 | 53 | 130 | 61 | 138 | 4.42e-11 | 57.0 |
| MS.gene52597.t1 | MTR_8g099920 | 41.772 | 79 | 44 | 2 | 53 | 130 | 59 | 136 | 4.58e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52597.t1 | AT1G65290 | 72.180 | 133 | 27 | 3 | 1 | 130 | 1 | 126 | 6.42e-60 | 181 |
| MS.gene52597.t1 | AT2G44620 | 53.488 | 129 | 52 | 4 | 1 | 129 | 1 | 121 | 6.07e-36 | 120 |
| MS.gene52597.t1 | AT5G47630 | 37.097 | 124 | 71 | 3 | 10 | 130 | 8 | 127 | 1.35e-19 | 79.0 |
| MS.gene52597.t1 | AT5G47630 | 37.097 | 124 | 71 | 3 | 10 | 130 | 8 | 127 | 1.35e-19 | 79.0 |
| MS.gene52597.t1 | AT5G47630 | 37.097 | 124 | 71 | 3 | 10 | 130 | 8 | 127 | 1.35e-19 | 79.0 |
Find 37 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTAGAAGGATCAACTTTC+TGG | 0.153197 | 7.4:-25875247 | None:intergenic |
| ATCTTGTCTGCTTCATTATC+AGG | 0.242778 | 7.4:-25877797 | None:intergenic |
| GAAACGACGAAGGAAGAAAT+TGG | 0.274656 | 7.4:-25875150 | None:intergenic |
| TATCCAATCCAAGGTCATTC+TGG | 0.280875 | 7.4:-25877718 | None:intergenic |
| CCAGAAAGTTGATCCTTCTA+AGG | 0.310928 | 7.4:+25875247 | MS.gene52597:CDS |
| GTCGTTTCAGCGAAGAGGTT+AGG | 0.325470 | 7.4:+25875165 | MS.gene52597:CDS |
| TGACCTTGGATTGGATAGTT+TGG | 0.330609 | 7.4:+25877724 | MS.gene52597:CDS |
| ATGGCTCTTGAGGAAGAGTT+TGG | 0.348440 | 7.4:+25877764 | MS.gene52597:CDS |
| TCGTTTCAGCGAAGAGGTTA+GGG | 0.350830 | 7.4:+25875166 | MS.gene52597:CDS |
| AGGAATGAATATACCTTAGA+AGG | 0.366704 | 7.4:-25875260 | None:intergenic |
| ATGAATTCCACTACTTTGCC+TGG | 0.402676 | 7.4:-25877862 | None:intergenic |
| TGGCTCTTGAGGAAGAGTTT+GGG | 0.415460 | 7.4:+25877765 | MS.gene52597:CDS |
| ACAATGGCGGCGAGAAGAAC+CGG | 0.449215 | 7.4:+25875050 | None:intergenic |
| TTTCCAGAATGACCTTGGAT+TGG | 0.459097 | 7.4:+25877715 | MS.gene52597:CDS |
| AAAGGCGATTGGTGGTTCAA+TGG | 0.465586 | 7.4:-25875116 | None:intergenic |
| GTAATTGATCAGAGGTAAAC+CGG | 0.480151 | 7.4:-25875069 | None:intergenic |
| AAACGACGAAGGAAGAAATT+GGG | 0.492698 | 7.4:-25875149 | None:intergenic |
| GCTCATTTCCAGAATGACCT+TGG | 0.503501 | 7.4:+25877710 | MS.gene52597:CDS |
| TGAATTCCACTACTTTGCCT+GGG | 0.511311 | 7.4:-25877861 | None:intergenic |
| TCATTCTGGAAATGAGCACT+TGG | 0.522843 | 7.4:-25877704 | None:intergenic |
| CTTCATTGCATCTCATCCCC+AGG | 0.529562 | 7.4:+25877844 | MS.gene52597:CDS |
| CCTTCGTCGTTTCAGCGAAG+AGG | 0.534191 | 7.4:+25875160 | MS.gene52597:CDS |
| AAATTGGGAAGAAGACGAAA+AGG | 0.543498 | 7.4:-25875134 | None:intergenic |
| GAGAATCAACTTGCACTCTC+AGG | 0.548584 | 7.4:-25875091 | None:intergenic |
| CATTCTGGAAATGAGCACTT+GGG | 0.569313 | 7.4:-25877703 | None:intergenic |
| CTCATCCCCAGGCAAAGTAG+TGG | 0.584414 | 7.4:+25877855 | MS.gene52597:CDS |
| GAAGAAGACGAAAAGGCGAT+TGG | 0.587345 | 7.4:-25875127 | None:intergenic |
| GAAGACGAAAAGGCGATTGG+TGG | 0.593083 | 7.4:-25875124 | None:intergenic |
| AGAGATTGTGATGGCTCTTG+AGG | 0.598690 | 7.4:+25877754 | MS.gene52597:CDS |
| CGTTTCAGCGAAGAGGTTAG+GGG | 0.604330 | 7.4:+25875167 | MS.gene52597:CDS |
| GGATGCTGTAGAGATTGTGA+TGG | 0.619499 | 7.4:+25877745 | MS.gene52597:CDS |
| GAATTCCACTACTTTGCCTG+GGG | 0.620707 | 7.4:-25877860 | None:intergenic |
| CATCCAAACTATCCAATCCA+AGG | 0.636485 | 7.4:-25877727 | None:intergenic |
| TACGTTTCTCGACAAATCTG+AGG | 0.640218 | 7.4:+25875190 | MS.gene52597:CDS |
| ATTCTGGAAATGAGCACTTG+GGG | 0.645151 | 7.4:-25877702 | None:intergenic |
| CCTCTTCGCTGAAACGACGA+AGG | 0.663136 | 7.4:-25875160 | None:intergenic |
| ACTCTCAGGTAATTGATCAG+AGG | 0.675792 | 7.4:-25875077 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTATTTCCGATAATT+AGG | + | chr7.4:25875396-25875415 | MS.gene52597:intron | 15.0% |
| !! | AACTAAAACAATGTTATTAT+CGG | - | chr7.4:25876937-25876956 | None:intergenic | 15.0% |
| !! | TACAAAAATATATAAATCCT+TGG | + | chr7.4:25876780-25876799 | MS.gene52597:intron | 15.0% |
| !! | TTAACTTTATCTTTAGTTAT+AGG | - | chr7.4:25875473-25875492 | None:intergenic | 15.0% |
| !!! | ATTGTTTTCATATAAGTTAT+AGG | + | chr7.4:25875497-25875516 | MS.gene52597:intron | 15.0% |
| !!! | TATTATTTTTCATAACGTAT+CGG | - | chr7.4:25875916-25875935 | None:intergenic | 15.0% |
| !!! | TTGTTTTCATATAAGTTATA+GGG | + | chr7.4:25875498-25875517 | MS.gene52597:intron | 15.0% |
| !!! | TTTAACTTTATTTTACCTTT+TGG | - | chr7.4:25875608-25875627 | None:intergenic | 15.0% |
| !! | AATCTTTCATCAAATTAAGT+AGG | + | chr7.4:25876980-25876999 | MS.gene52597:intron | 20.0% |
| !! | ATCGCAAACAATAATATATT+TGG | - | chr7.4:25877189-25877208 | None:intergenic | 20.0% |
| !! | ATCTTTCATCAAATTAAGTA+GGG | + | chr7.4:25876981-25877000 | MS.gene52597:intron | 20.0% |
| !! | TCGCAAACAATAATATATTT+GGG | - | chr7.4:25877188-25877207 | None:intergenic | 20.0% |
| !! | TGATGAATGAAACAATAATT+AGG | - | chr7.4:25875316-25875335 | None:intergenic | 20.0% |
| !!! | AACATTGTTTTAGTTATATG+AGG | + | chr7.4:25876942-25876961 | MS.gene52597:intron | 20.0% |
| !!! | ATTTTTGTATTGCATTTTAG+TGG | - | chr7.4:25876769-25876788 | None:intergenic | 20.0% |
| !!! | GCTATTTTTATAAGCTATAT+TGG | + | chr7.4:25875649-25875668 | MS.gene52597:intron | 20.0% |
| !!! | TAAGCTAGATTATTTTCTTA+AGG | - | chr7.4:25876582-25876601 | None:intergenic | 20.0% |
| ! | AAACATTTCATAAGCTACTT+TGG | + | chr7.4:25876553-25876572 | MS.gene52597:intron | 25.0% |
| ! | AAAGTAGCTTATGAAATGTT+TGG | - | chr7.4:25876554-25876573 | None:intergenic | 25.0% |
| ! | AAGAGAATTATTGCCATAAA+AGG | + | chr7.4:25877049-25877068 | MS.gene52597:intron | 25.0% |
| ! | AAGCTGGACTATATTAATAT+TGG | - | chr7.4:25876163-25876182 | None:intergenic | 25.0% |
| ! | AAGTGATTACTTCATTTAAG+AGG | + | chr7.4:25877242-25877261 | MS.gene52597:intron | 25.0% |
| ! | AATTGAGTGTAATTCTTACA+TGG | - | chr7.4:25876858-25876877 | None:intergenic | 25.0% |
| ! | ATAAACTTGTGAGACTAATT+GGG | - | chr7.4:25877477-25877496 | None:intergenic | 25.0% |
| ! | ATATAAGAATTGCTCATTGA+TGG | - | chr7.4:25876733-25876752 | None:intergenic | 25.0% |
| ! | ATTAACGTGATGTTATTGTT+AGG | + | chr7.4:25875335-25875354 | MS.gene52597:intron | 25.0% |
| ! | CAATTCTTATATGAAGCTAA+AGG | + | chr7.4:25876741-25876760 | MS.gene52597:intron | 25.0% |
| ! | GAAACGAATGATAATAATAG+AGG | - | chr7.4:25875283-25875302 | None:intergenic | 25.0% |
| ! | TAAGCTACTTATATACCAAA+AGG | + | chr7.4:25875590-25875609 | MS.gene52597:intron | 25.0% |
| ! | TACTTCATTTAAGAGGATTA+AGG | + | chr7.4:25877249-25877268 | MS.gene52597:intron | 25.0% |
| ! | TATAAACTTGTGAGACTAAT+TGG | - | chr7.4:25877478-25877497 | None:intergenic | 25.0% |
| ! | TATAAATCCTTGGATTTGAT+TGG | + | chr7.4:25876790-25876809 | MS.gene52597:intron | 25.0% |
| ! | TCCAAACATTACCTAATTAT+CGG | - | chr7.4:25875410-25875429 | None:intergenic | 25.0% |
| ! | TGCTGGACTATATTAATATT+GGG | - | chr7.4:25876204-25876223 | None:intergenic | 25.0% |
| ! | TTGCTGGACTATATTAATAT+TGG | - | chr7.4:25876205-25876224 | None:intergenic | 25.0% |
| !! | ATGGCAATAATTCTCTTTTA+TGG | - | chr7.4:25877046-25877065 | None:intergenic | 25.0% |
| !! | TCAAAAACAGTTTCCTTTTA+TGG | - | chr7.4:25877065-25877084 | None:intergenic | 25.0% |
| !!! | AAATGAAGATAGGGTTTTTT+GGG | - | chr7.4:25876239-25876258 | None:intergenic | 25.0% |
| !!! | TAACTTGTTTGAAAACAGTT+TGG | - | chr7.4:25877365-25877384 | None:intergenic | 25.0% |
| AAAGCTGGTAGCAATATTAA+AGG | - | chr7.4:25876704-25876723 | None:intergenic | 30.0% | |
| AACATAACCAATCAAATCCA+AGG | - | chr7.4:25876800-25876819 | None:intergenic | 30.0% | |
| AAGAAGTTAGAAACAGCTTA+TGG | + | chr7.4:25877422-25877441 | MS.gene52597:intron | 30.0% | |
| AATTGCGAATTATGTGACTA+TGG | - | chr7.4:25875783-25875802 | None:intergenic | 30.0% | |
| ACAAATAAACCAATCCAAAC+AGG | + | chr7.4:25877507-25877526 | MS.gene52597:intron | 30.0% | |
| ACGTTGTAGTTTCTATTGAA+TGG | - | chr7.4:25876118-25876137 | None:intergenic | 30.0% | |
| ACTGGTTAAGGATATGAAAA+AGG | - | chr7.4:25877140-25877159 | None:intergenic | 30.0% | |
| ACTTCAAACAGTAAAGTGTA+AGG | - | chr7.4:25877566-25877585 | None:intergenic | 30.0% | |
| AGGAATGAATATACCTTAGA+AGG | - | chr7.4:25875263-25875282 | None:intergenic | 30.0% | |
| CAAATAAACCAATCCAAACA+GGG | + | chr7.4:25877508-25877527 | MS.gene52597:intron | 30.0% | |
| CTTATACTCTCTTGTTAACA+TGG | + | chr7.4:25877649-25877668 | MS.gene52597:intron | 30.0% | |
| TCCGATAATTAGGTAATGTT+TGG | + | chr7.4:25875406-25875425 | MS.gene52597:intron | 30.0% | |
| TTAGGTAATGTTTGGATCAA+CGG | + | chr7.4:25875414-25875433 | MS.gene52597:intron | 30.0% | |
| TTGTAGTTTCTATTGAATGG+TGG | - | chr7.4:25876115-25876134 | None:intergenic | 30.0% | |
| ! | ATTAATATTGGGCTTTTGCT+TGG | - | chr7.4:25876193-25876212 | None:intergenic | 30.0% |
| ! | TTAATATTGGGCTTTTGCTT+GGG | - | chr7.4:25876192-25876211 | None:intergenic | 30.0% |
| ! | TTGGATTTGATTGGTTATGT+TGG | + | chr7.4:25876799-25876818 | MS.gene52597:intron | 30.0% |
| !! | TTGAAGTGTGTTTGTCATTT+TGG | + | chr7.4:25877579-25877598 | MS.gene52597:intron | 30.0% |
| !!! | GAAATGAAGATAGGGTTTTT+TGG | - | chr7.4:25876240-25876259 | None:intergenic | 30.0% |
| AAACGACGAAGGAAGAAATT+GGG | - | chr7.4:25875152-25875171 | None:intergenic | 35.0% | |
| AAATTGGGAAGAAGACGAAA+AGG | - | chr7.4:25875137-25875156 | None:intergenic | 35.0% | |
| ACGATGCTGAAATGAAGATA+GGG | - | chr7.4:25876248-25876267 | None:intergenic | 35.0% | |
| ATCTTGTCTGCTTCATTATC+AGG | - | chr7.4:25877800-25877819 | None:intergenic | 35.0% | |
| ATGATGAAACTGGATCAAAG+AGG | - | chr7.4:25876284-25876303 | None:intergenic | 35.0% | |
| CATCTACTCATGTAAGCATT+CGG | - | chr7.4:25876649-25876668 | None:intergenic | 35.0% | |
| CGAATTATGTGACTATGGTT+TGG | - | chr7.4:25875778-25875797 | None:intergenic | 35.0% | |
| CTGGTAGCAATATTAAAGGA+AGG | - | chr7.4:25876700-25876719 | None:intergenic | 35.0% | |
| GATGAAATTATCACTGCCAA+GGG | + | chr7.4:25877206-25877225 | MS.gene52597:intron | 35.0% | |
| GTAATTGATCAGAGGTAAAC+CGG | - | chr7.4:25875072-25875091 | None:intergenic | 35.0% | |
| TAGGAAGAAGATGATGAAAC+TGG | - | chr7.4:25876294-25876313 | None:intergenic | 35.0% | |
| TATAAGTTATAGGGCGTGTT+TGG | + | chr7.4:25875507-25875526 | MS.gene52597:intron | 35.0% | |
| TGTGCTTCTTTCCATTTATC+AGG | + | chr7.4:25877676-25877695 | MS.gene52597:intron | 35.0% | |
| ! | GACAGAGTTTCACAGTTTTT+AGG | - | chr7.4:25876313-25876332 | None:intergenic | 35.0% |
| ! | TGATAAATGGAAAGAAGCAC+AGG | - | chr7.4:25877677-25877696 | None:intergenic | 35.0% |
| ACATAATTCGCAATTCGCTC+TGG | + | chr7.4:25875788-25875807 | MS.gene52597:intron | 40.0% | |
| ACATTGTTCAGGAGAGCTTA+TGG | - | chr7.4:25876626-25876645 | None:intergenic | 40.0% | |
| ACTCTCAGGTAATTGATCAG+AGG | - | chr7.4:25875080-25875099 | None:intergenic | 40.0% | |
| ACTTCTTTCCTATGCTCTCT+AGG | - | chr7.4:25877409-25877428 | None:intergenic | 40.0% | |
| ACTTGGGGTAACCTGATAAA+TGG | - | chr7.4:25877690-25877709 | None:intergenic | 40.0% | |
| AGCTTATCTACGAGACTCTT+TGG | - | chr7.4:25875742-25875761 | None:intergenic | 40.0% | |
| AGTACACAATTGCTTGCAGA+GGG | - | chr7.4:25877616-25877635 | None:intergenic | 40.0% | |
| ATGAAACTGGATCAAAGAGG+CGG | - | chr7.4:25876281-25876300 | None:intergenic | 40.0% | |
| CATCCAAACTATCCAATCCA+AGG | - | chr7.4:25877730-25877749 | None:intergenic | 40.0% | |
| CCTTAGAAGGATCAACTTTC+TGG | - | chr7.4:25875250-25875269 | None:intergenic | 40.0% | |
| CGATGAAATTATCACTGCCA+AGG | + | chr7.4:25877205-25877224 | MS.gene52597:intron | 40.0% | |
| CTAGCTTATAGACGTGTCAT+TGG | + | chr7.4:25876594-25876613 | MS.gene52597:intron | 40.0% | |
| CTCATAGTCACATAATTCGC+TGG | - | chr7.4:25876531-25876550 | None:intergenic | 40.0% | |
| CTGTGAGTGAAGAAACTAGA+AGG | - | chr7.4:25876341-25876360 | None:intergenic | 40.0% | |
| CTTAAGAGAGATCAAACCCT+TGG | - | chr7.4:25877225-25877244 | None:intergenic | 40.0% | |
| GAAACGACGAAGGAAGAAAT+TGG | - | chr7.4:25875153-25875172 | None:intergenic | 40.0% | |
| GACGATGCTGAAATGAAGAT+AGG | - | chr7.4:25876249-25876268 | None:intergenic | 40.0% | |
| GCTTATCTACGAGACTCTTT+GGG | - | chr7.4:25875741-25875760 | None:intergenic | 40.0% | |
| GTTTACACTATAGCCCTGTT+TGG | - | chr7.4:25877524-25877543 | None:intergenic | 40.0% | |
| TAAGCATTCGGACATTGTTC+AGG | - | chr7.4:25876637-25876656 | None:intergenic | 40.0% | |
| TACGTTTCTCGACAAATCTG+AGG | + | chr7.4:25875190-25875209 | MS.gene52597:CDS | 40.0% | |
| TAGTACACAATTGCTTGCAG+AGG | - | chr7.4:25877617-25877636 | None:intergenic | 40.0% | |
| TATCCAATCCAAGGTCATTC+TGG | - | chr7.4:25877721-25877740 | None:intergenic | 40.0% | |
| TGAGTGAAGAAACTAGAAGG+CGG | - | chr7.4:25876338-25876357 | None:intergenic | 40.0% | |
| TTTCCAGAATGACCTTGGAT+TGG | + | chr7.4:25877715-25877734 | MS.gene52597:CDS | 40.0% | |
| TTTGCTTGGGTTAATGAAGC+TGG | - | chr7.4:25876179-25876198 | None:intergenic | 40.0% | |
| ! | ATTCTGGAAATGAGCACTTG+GGG | - | chr7.4:25877705-25877724 | None:intergenic | 40.0% |
| ! | CATTCTGGAAATGAGCACTT+GGG | - | chr7.4:25877706-25877725 | None:intergenic | 40.0% |
| ! | CCAGAAAGTTGATCCTTCTA+AGG | + | chr7.4:25875247-25875266 | MS.gene52597:CDS | 40.0% |
| ! | CGTATGAGAGTATAGAGCTT+CGG | + | chr7.4:25875862-25875881 | MS.gene52597:intron | 40.0% |
| ! | TAAGCTATCCTAGAGAGCAT+AGG | + | chr7.4:25877398-25877417 | MS.gene52597:intron | 40.0% |
| ! | TATGTGACTATGGTTTGGCT+TGG | - | chr7.4:25875773-25875792 | None:intergenic | 40.0% |
| ! | TCATTCTGGAAATGAGCACT+TGG | - | chr7.4:25877707-25877726 | None:intergenic | 40.0% |
| ! | TGACCTTGGATTGGATAGTT+TGG | + | chr7.4:25877724-25877743 | MS.gene52597:CDS | 40.0% |
| ! | TTGAATGGTGGTGCTAAAGT+TGG | - | chr7.4:25876103-25876122 | None:intergenic | 40.0% |
| !!! | AAGATAGGGTTTTTTGGGCT+TGG | - | chr7.4:25876234-25876253 | None:intergenic | 40.0% |
| !!! | AGATAGGGTTTTTTGGGCTT+GGG | - | chr7.4:25876233-25876252 | None:intergenic | 40.0% |
| !!! | GTCGTTTTTGCAGGTTCTAT+GGG | + | chr7.4:25876405-25876424 | MS.gene52597:intron | 40.0% |
| AGAGATTGTGATGGCTCTTG+AGG | + | chr7.4:25877754-25877773 | MS.gene52597:CDS | 45.0% | |
| ATGGCTCTTGAGGAAGAGTT+TGG | + | chr7.4:25877764-25877783 | MS.gene52597:CDS | 45.0% | |
| CACTATAGCCCTGTTTGGAT+TGG | - | chr7.4:25877519-25877538 | None:intergenic | 45.0% | |
| CAGATTCGTGAAGGAATTCG+CGG | - | chr7.4:25876442-25876461 | None:intergenic | 45.0% | |
| CGAATTCCTTCACGAATCTG+CGG | + | chr7.4:25876442-25876461 | MS.gene52597:intron | 45.0% | |
| CTTGTGAGACTAATTGGGAG+AGG | - | chr7.4:25877472-25877491 | None:intergenic | 45.0% | |
| GAAGAAGACGAAAAGGCGAT+TGG | - | chr7.4:25875130-25875149 | None:intergenic | 45.0% | |
| GAATTCCTTCACGAATCTGC+GGG | + | chr7.4:25876443-25876462 | MS.gene52597:intron | 45.0% | |
| GAGAATCAACTTGCACTCTC+AGG | - | chr7.4:25875094-25875113 | None:intergenic | 45.0% | |
| GCTCATTTCCAGAATGACCT+TGG | + | chr7.4:25877710-25877729 | MS.gene52597:CDS | 45.0% | |
| GGATGCTGTAGAGATTGTGA+TGG | + | chr7.4:25877745-25877764 | MS.gene52597:CDS | 45.0% | |
| TACGCAAAAGAACCGCGAAT+CGG | + | chr7.4:25876472-25876491 | MS.gene52597:intron | 45.0% | |
| TATAGAGCTTCGGTACGCTT+CGG | + | chr7.4:25875872-25875891 | MS.gene52597:intron | 45.0% | |
| TCGTTTCAGCGAAGAGGTTA+GGG | + | chr7.4:25875166-25875185 | MS.gene52597:CDS | 45.0% | |
| TGGCTCTTGAGGAAGAGTTT+GGG | + | chr7.4:25877765-25877784 | MS.gene52597:CDS | 45.0% | |
| ! | AAAGGCGATTGGTGGTTCAA+TGG | - | chr7.4:25875119-25875138 | None:intergenic | 45.0% |
| ! | CACATAATTCGCTGGTTGAG+TGG | - | chr7.4:25876523-25876542 | None:intergenic | 45.0% |
| ! | TTCGCGGTTCTTTTGCGTAT+TGG | - | chr7.4:25876471-25876490 | None:intergenic | 45.0% |
| !!! | CTTACGATGGTCGTTTTTGC+AGG | + | chr7.4:25876396-25876415 | MS.gene52597:intron | 45.0% |
| !!! | GGTCGTTTTTGCAGGTTCTA+TGG | + | chr7.4:25876404-25876423 | MS.gene52597:intron | 45.0% |
| AACTGGATCAAAGAGGCGGA+AGG | - | chr7.4:25876277-25876296 | None:intergenic | 50.0% | |
| ATATCCTTAACCAGTGCCCC+GGG | + | chr7.4:25877145-25877164 | MS.gene52597:intron | 50.0% | |
| CATATCCTTAACCAGTGCCC+CGG | + | chr7.4:25877144-25877163 | MS.gene52597:intron | 50.0% | |
| CGTTTCAGCGAAGAGGTTAG+GGG | + | chr7.4:25875167-25875186 | MS.gene52597:CDS | 50.0% | |
| CTTCATTGCATCTCATCCCC+AGG | + | chr7.4:25877844-25877863 | MS.gene52597:CDS | 50.0% | |
| GAAGACGAAAAGGCGATTGG+TGG | - | chr7.4:25875127-25875146 | None:intergenic | 50.0% | |
| GTCGTTTCAGCGAAGAGGTT+AGG | + | chr7.4:25875165-25875184 | MS.gene52597:CDS | 50.0% | |
| GTGAAGAAACTAGAAGGCGG+CGG | - | chr7.4:25876335-25876354 | None:intergenic | 50.0% | |
| !! | CATTGATGGCGTCGTAAAGC+TGG | - | chr7.4:25876719-25876738 | None:intergenic | 50.0% |
| !!! | AGGGTTTTTTGGGCTTGGGT+TGG | - | chr7.4:25876229-25876248 | None:intergenic | 50.0% |
| AAATGCTAACCGTTGCCCCC+GGG | - | chr7.4:25877165-25877184 | None:intergenic | 55.0% | |
| ATTCGCTCTGGTACGCGGTA+CGG | + | chr7.4:25875800-25875819 | MS.gene52597:intron | 55.0% | |
| CCTCTTCGCTGAAACGACGA+AGG | - | chr7.4:25875163-25875182 | None:intergenic | 55.0% | |
| CCTTCGTCGTTTCAGCGAAG+AGG | + | chr7.4:25875160-25875179 | MS.gene52597:CDS | 55.0% | |
| CGACCATCGTAAGAGTGACG+TGG | - | chr7.4:25876389-25876408 | None:intergenic | 55.0% | |
| GAAATGCTAACCGTTGCCCC+CGG | - | chr7.4:25877166-25877185 | None:intergenic | 55.0% | |
| GCTCCACGTCACTCTTACGA+TGG | + | chr7.4:25876383-25876402 | MS.gene52597:intron | 55.0% | |
| GGTATGCTTAACCAGTGCCC+CGG | - | chr7.4:25877025-25877044 | None:intergenic | 55.0% | |
| GTATGCTTAACCAGTGCCCC+GGG | - | chr7.4:25877024-25877043 | None:intergenic | 55.0% | |
| TATCCTTAACCAGTGCCCCG+GGG | + | chr7.4:25877146-25877165 | MS.gene52597:intron | 55.0% | |
| TATGCTTAACCAGTGCCCCG+GGG | - | chr7.4:25877023-25877042 | None:intergenic | 55.0% | |
| TCGCAATTCGCTCTGGTACG+CGG | + | chr7.4:25875795-25875814 | MS.gene52597:intron | 55.0% | |
| TGGTTCCCGCAGATTCGTGA+AGG | - | chr7.4:25876451-25876470 | None:intergenic | 55.0% | |
| TTGAGTGGCGAACCGCGAAT+TGG | - | chr7.4:25876508-25876527 | None:intergenic | 55.0% | |
| !! | ACGTGGAGCACTGTGAGTGT+AGG | - | chr7.4:25876372-25876391 | None:intergenic | 55.0% |
| AATGCTAACCGTTGCCCCCG+GGG | - | chr7.4:25877164-25877183 | None:intergenic | 60.0% | |
| ATCCTTAACCAGTGCCCCGG+GGG | + | chr7.4:25877147-25877166 | MS.gene52597:intron | 60.0% | |
| ATGCTTAACCAGTGCCCCGG+GGG | - | chr7.4:25877022-25877041 | None:intergenic | 60.0% | |
| GGTTCGCGCGTACCAATTCG+CGG | + | chr7.4:25876493-25876512 | MS.gene52597:intron | 60.0% | |
| TCTGGTACGCGGTACGGGTA+CGG | + | chr7.4:25875806-25875825 | MS.gene52597:intron | 60.0% | |
| TTCGCTCTGGTACGCGGTAC+GGG | + | chr7.4:25875801-25875820 | MS.gene52597:intron | 60.0% | |
| !! | TTGGGCTTGGGTTGGCTTGC+TGG | - | chr7.4:25876221-25876240 | None:intergenic | 60.0% |
| CTGGTACGCGGTACGGGTAC+GGG | + | chr7.4:25875807-25875826 | MS.gene52597:intron | 65.0% | |
| GTCCTGCTAACCAGTGCCCC+CGG | + | chr7.4:25877003-25877022 | MS.gene52597:intron | 65.0% | |
| TCCTGCTAACCAGTGCCCCC+GGG | + | chr7.4:25877004-25877023 | MS.gene52597:intron | 65.0% | |
| !! | GGTACGCGCGAACCGATTCG+CGG | - | chr7.4:25876487-25876506 | None:intergenic | 65.0% |
| AACCAGTGCCCCGGGGGCAA+CGG | + | chr7.4:25877153-25877172 | MS.gene52597:intron | 70.0% | |
| CCTGCTAACCAGTGCCCCCG+GGG | + | chr7.4:25877005-25877024 | MS.gene52597:intron | 70.0% | |
| GCGGTACGGGTACGGGTACG+CGG | + | chr7.4:25875814-25875833 | MS.gene52597:intron | 70.0% | |
| !! | TGCCCCCGGGGCACTGGTTA+AGG | - | chr7.4:25877036-25877017 | None:intergenic | 70.0% |
| AACCAGTGCCCCCGGGGCAC+TGG | + | chr7.4:25877011-25877030 | MS.gene52597:intron | 75.0% | |
| AACCGTTGCCCCCGGGGCAC+TGG | - | chr7.4:25877158-25877177 | None:intergenic | 75.0% | |
| ! | AACCAGTGCCCCGGGGGCAC+TGG | - | chr7.4:25877016-25877035 | None:intergenic | 75.0% |
| !! | CCCCGGGGGCACTGGTTAGC+AGG | - | chr7.4:25877008-25877027 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 25875053 | 25877874 | 25875053 | ID=MS.gene52597 |
| chr7.4 | mRNA | 25875053 | 25877874 | 25875053 | ID=MS.gene52597.t1;Parent=MS.gene52597 |
| chr7.4 | exon | 25875053 | 25875268 | 25875053 | ID=MS.gene52597.t1.exon1;Parent=MS.gene52597.t1 |
| chr7.4 | CDS | 25875053 | 25875268 | 25875053 | ID=cds.MS.gene52597.t1;Parent=MS.gene52597.t1 |
| chr7.4 | exon | 25877698 | 25877874 | 25877698 | ID=MS.gene52597.t1.exon2;Parent=MS.gene52597.t1 |
| chr7.4 | CDS | 25877698 | 25877874 | 25877698 | ID=cds.MS.gene52597.t1;Parent=MS.gene52597.t1 |
| Gene Sequence |
| Protein sequence |
