Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52599.t1 | XP_003624207.1 | 99.7 | 297 | 1 | 0 | 22 | 318 | 22 | 318 | 7.40E-163 | 583.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52599.t1 | Q9Y394 | 36.3 | 331 | 175 | 10 | 2 | 307 | 9 | 328 | 8.6e-43 | 175.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52599.t1 | G7KSD6 | 99.7 | 297 | 1 | 0 | 22 | 318 | 22 | 318 | 5.4e-163 | 583.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene52599 | MS.gene05880 | PPI |
| MS.gene52599 | MS.gene049084 | PPI |
| MS.gene52599 | MS.gene05958 | PPI |
| MS.gene52599 | MS.gene015787 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52599.t1 | MTR_7g080410 | 99.371 | 318 | 2 | 0 | 1 | 318 | 1 | 318 | 0.0 | 648 |
| MS.gene52599.t1 | MTR_7g080410 | 92.453 | 318 | 2 | 1 | 1 | 318 | 1 | 296 | 0.0 | 587 |
| MS.gene52599.t1 | MTR_8g096620 | 34.071 | 226 | 137 | 8 | 36 | 257 | 43 | 260 | 1.95e-23 | 99.0 |
| MS.gene52599.t1 | MTR_7g063260 | 29.126 | 206 | 140 | 5 | 26 | 230 | 4 | 204 | 9.23e-20 | 87.4 |
| MS.gene52599.t1 | MTR_7g063360 | 28.846 | 208 | 136 | 3 | 26 | 229 | 4 | 203 | 1.16e-19 | 87.0 |
| MS.gene52599.t1 | MTR_7g063270 | 28.641 | 206 | 141 | 5 | 26 | 230 | 4 | 204 | 4.68e-19 | 85.5 |
| MS.gene52599.t1 | MTR_7g063390 | 28.922 | 204 | 141 | 4 | 26 | 229 | 4 | 203 | 1.46e-18 | 84.0 |
| MS.gene52599.t1 | MTR_8g096580 | 32.653 | 196 | 124 | 7 | 36 | 229 | 43 | 232 | 2.19e-18 | 84.7 |
| MS.gene52599.t1 | MTR_3g086210 | 31.047 | 277 | 160 | 15 | 5 | 269 | 16 | 273 | 2.97e-18 | 84.0 |
| MS.gene52599.t1 | MTR_8g089575 | 30.800 | 250 | 162 | 7 | 1 | 244 | 6 | 250 | 4.30e-18 | 83.6 |
| MS.gene52599.t1 | MTR_7g063330 | 29.101 | 189 | 122 | 4 | 45 | 229 | 22 | 202 | 5.76e-18 | 82.4 |
| MS.gene52599.t1 | MTR_7g105590 | 32.292 | 192 | 121 | 4 | 38 | 227 | 8 | 192 | 1.78e-17 | 79.7 |
| MS.gene52599.t1 | MTR_7g063320 | 28.000 | 200 | 140 | 4 | 30 | 229 | 7 | 202 | 4.48e-17 | 80.1 |
| MS.gene52599.t1 | MTR_7g094520 | 27.184 | 206 | 143 | 4 | 28 | 229 | 1 | 203 | 6.24e-17 | 79.3 |
| MS.gene52599.t1 | MTR_2g022600 | 31.120 | 241 | 139 | 8 | 30 | 263 | 25 | 245 | 6.04e-16 | 78.2 |
| MS.gene52599.t1 | MTR_3g087850 | 27.985 | 268 | 153 | 10 | 42 | 281 | 30 | 285 | 3.73e-15 | 75.1 |
| MS.gene52599.t1 | MTR_4g134660 | 29.592 | 196 | 128 | 5 | 38 | 229 | 6 | 195 | 4.17e-15 | 73.9 |
| MS.gene52599.t1 | MTR_7g094510 | 27.835 | 194 | 137 | 3 | 38 | 229 | 6 | 198 | 6.13e-15 | 73.6 |
| MS.gene52599.t1 | MTR_4g058810 | 29.557 | 203 | 135 | 6 | 28 | 225 | 1 | 200 | 6.55e-15 | 73.9 |
| MS.gene52599.t1 | MTR_4g058840 | 30.303 | 198 | 131 | 5 | 32 | 225 | 6 | 200 | 1.03e-14 | 73.6 |
| MS.gene52599.t1 | MTR_4g058820 | 30.303 | 198 | 131 | 5 | 32 | 225 | 6 | 200 | 1.03e-14 | 73.6 |
| MS.gene52599.t1 | MTR_4g066050 | 29.744 | 195 | 127 | 4 | 40 | 229 | 26 | 215 | 3.59e-14 | 71.6 |
| MS.gene52599.t1 | MTR_7g107670 | 29.897 | 194 | 126 | 5 | 38 | 229 | 33 | 218 | 5.96e-14 | 71.6 |
| MS.gene52599.t1 | MTR_4g131740 | 26.293 | 232 | 151 | 5 | 26 | 241 | 29 | 256 | 1.59e-13 | 70.1 |
| MS.gene52599.t1 | MTR_4g064887 | 27.807 | 187 | 127 | 3 | 45 | 229 | 22 | 202 | 2.81e-13 | 68.6 |
| MS.gene52599.t1 | MTR_4g064887 | 27.807 | 187 | 127 | 3 | 45 | 229 | 22 | 202 | 1.12e-12 | 67.4 |
| MS.gene52599.t1 | MTR_3g085740 | 26.341 | 205 | 145 | 5 | 26 | 229 | 63 | 262 | 2.98e-12 | 66.6 |
| MS.gene52599.t1 | MTR_7g105580 | 30.928 | 194 | 107 | 5 | 38 | 229 | 8 | 176 | 4.67e-12 | 65.5 |
| MS.gene52599.t1 | MTR_3g087860 | 31.655 | 139 | 90 | 4 | 97 | 234 | 65 | 199 | 6.70e-12 | 65.5 |
| MS.gene52599.t1 | MTR_7g083870 | 26.804 | 194 | 133 | 4 | 38 | 229 | 35 | 221 | 6.86e-12 | 65.5 |
| MS.gene52599.t1 | MTR_7g071680 | 27.751 | 209 | 137 | 6 | 26 | 230 | 19 | 217 | 1.01e-11 | 65.1 |
| MS.gene52599.t1 | MTR_7g113650 | 28.019 | 207 | 131 | 7 | 32 | 229 | 35 | 232 | 1.79e-11 | 64.3 |
| MS.gene52599.t1 | MTR_1563s0010 | 31.651 | 218 | 128 | 10 | 41 | 246 | 112 | 320 | 1.90e-11 | 64.7 |
| MS.gene52599.t1 | MTR_4g097510 | 26.425 | 193 | 131 | 6 | 39 | 229 | 3 | 186 | 3.43e-11 | 63.2 |
| MS.gene52599.t1 | MTR_3g068065 | 27.322 | 183 | 123 | 5 | 45 | 224 | 24 | 199 | 3.51e-11 | 63.2 |
| MS.gene52599.t1 | MTR_3g068175 | 26.289 | 194 | 135 | 5 | 38 | 229 | 17 | 204 | 3.75e-11 | 63.2 |
| MS.gene52599.t1 | MTR_3g113870 | 28.495 | 186 | 123 | 5 | 46 | 229 | 29 | 206 | 7.49e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52599.t1 | AT3G03330 | 70.915 | 306 | 83 | 2 | 16 | 315 | 19 | 324 | 1.15e-159 | 449 |
| MS.gene52599.t1 | AT3G03350 | 64.957 | 117 | 36 | 1 | 135 | 246 | 172 | 288 | 1.20e-47 | 162 |
| MS.gene52599.t1 | AT3G03350 | 64.957 | 117 | 36 | 1 | 135 | 246 | 258 | 374 | 1.17e-46 | 162 |
| MS.gene52599.t1 | AT3G47350 | 36.404 | 228 | 135 | 8 | 5 | 229 | 10 | 230 | 1.06e-24 | 102 |
| MS.gene52599.t1 | AT3G47350 | 36.404 | 228 | 135 | 8 | 5 | 229 | 10 | 230 | 2.07e-24 | 101 |
| MS.gene52599.t1 | AT3G47360 | 34.222 | 225 | 135 | 8 | 10 | 229 | 15 | 231 | 6.54e-23 | 97.1 |
| MS.gene52599.t1 | AT5G50600 | 34.158 | 202 | 124 | 6 | 41 | 240 | 48 | 242 | 1.36e-21 | 94.0 |
| MS.gene52599.t1 | AT5G50700 | 34.158 | 202 | 124 | 6 | 41 | 240 | 48 | 242 | 1.36e-21 | 94.0 |
| MS.gene52599.t1 | AT1G10310 | 30.612 | 196 | 128 | 3 | 35 | 229 | 12 | 200 | 2.47e-18 | 83.2 |
| MS.gene52599.t1 | AT5G50690 | 30.603 | 232 | 147 | 8 | 3 | 233 | 17 | 235 | 5.24e-18 | 82.4 |
| MS.gene52599.t1 | AT5G50590 | 30.603 | 232 | 147 | 8 | 3 | 233 | 17 | 235 | 5.24e-18 | 82.4 |
| MS.gene52599.t1 | AT5G50690 | 30.085 | 236 | 143 | 8 | 3 | 233 | 17 | 235 | 5.26e-18 | 83.2 |
| MS.gene52599.t1 | AT5G50590 | 30.085 | 236 | 143 | 8 | 3 | 233 | 17 | 235 | 5.26e-18 | 83.2 |
| MS.gene52599.t1 | AT3G03980 | 30.198 | 202 | 123 | 5 | 41 | 229 | 17 | 213 | 3.57e-17 | 80.5 |
| MS.gene52599.t1 | AT5G10050 | 28.269 | 283 | 152 | 12 | 39 | 289 | 6 | 269 | 7.88e-17 | 79.7 |
| MS.gene52599.t1 | AT5G65205 | 30.303 | 198 | 126 | 6 | 39 | 234 | 7 | 194 | 1.53e-16 | 79.0 |
| MS.gene52599.t1 | AT4G10020 | 31.343 | 201 | 129 | 6 | 36 | 234 | 45 | 238 | 2.54e-16 | 79.3 |
| MS.gene52599.t1 | AT1G63380 | 28.696 | 230 | 141 | 6 | 1 | 225 | 1 | 212 | 2.60e-16 | 78.2 |
| MS.gene52599.t1 | AT1G63380 | 30.244 | 205 | 135 | 5 | 26 | 225 | 6 | 207 | 2.73e-16 | 78.2 |
| MS.gene52599.t1 | AT3G46170 | 30.144 | 209 | 137 | 6 | 22 | 225 | 11 | 215 | 2.74e-16 | 78.2 |
| MS.gene52599.t1 | AT2G29360 | 29.208 | 202 | 134 | 6 | 30 | 229 | 9 | 203 | 3.23e-16 | 77.8 |
| MS.gene52599.t1 | AT1G62610 | 29.756 | 205 | 134 | 6 | 27 | 225 | 3 | 203 | 3.66e-16 | 77.8 |
| MS.gene52599.t1 | AT1G62610 | 29.756 | 205 | 134 | 6 | 27 | 225 | 5 | 205 | 3.87e-16 | 77.4 |
| MS.gene52599.t1 | AT3G55310 | 30.244 | 205 | 134 | 6 | 26 | 225 | 6 | 206 | 3.92e-16 | 77.4 |
| MS.gene52599.t1 | AT1G62610 | 29.756 | 205 | 134 | 6 | 27 | 225 | 4 | 204 | 4.05e-16 | 77.4 |
| MS.gene52599.t1 | AT1G62610 | 29.756 | 205 | 134 | 6 | 27 | 225 | 9 | 209 | 5.95e-16 | 77.0 |
| MS.gene52599.t1 | AT1G63380 | 29.902 | 204 | 135 | 5 | 27 | 225 | 5 | 205 | 9.91e-16 | 76.3 |
| MS.gene52599.t1 | AT1G63380 | 29.902 | 204 | 135 | 5 | 27 | 225 | 9 | 209 | 1.24e-15 | 76.3 |
| MS.gene52599.t1 | AT3G06060 | 29.237 | 236 | 148 | 6 | 30 | 262 | 29 | 248 | 1.49e-15 | 76.6 |
| MS.gene52599.t1 | AT2G17845 | 27.941 | 204 | 138 | 4 | 38 | 234 | 47 | 248 | 1.50e-15 | 76.3 |
| MS.gene52599.t1 | AT3G06060 | 29.237 | 236 | 148 | 6 | 30 | 262 | 46 | 265 | 1.78e-15 | 76.6 |
| MS.gene52599.t1 | AT5G18210 | 27.835 | 194 | 134 | 4 | 41 | 229 | 11 | 203 | 2.31e-15 | 75.1 |
| MS.gene52599.t1 | AT5G18210 | 27.835 | 194 | 134 | 4 | 41 | 229 | 11 | 203 | 2.52e-15 | 75.1 |
| MS.gene52599.t1 | AT4G13180 | 30.808 | 198 | 120 | 5 | 41 | 229 | 16 | 205 | 4.26e-15 | 74.3 |
| MS.gene52599.t1 | AT3G26760 | 28.866 | 194 | 129 | 4 | 38 | 229 | 36 | 222 | 6.33e-15 | 74.3 |
| MS.gene52599.t1 | AT1G07440 | 29.082 | 196 | 127 | 4 | 38 | 229 | 12 | 199 | 6.67e-15 | 73.9 |
| MS.gene52599.t1 | AT3G55290 | 30.244 | 205 | 134 | 6 | 26 | 225 | 6 | 206 | 8.93e-15 | 73.6 |
| MS.gene52599.t1 | AT3G55290 | 30.653 | 199 | 129 | 6 | 32 | 225 | 13 | 207 | 1.16e-14 | 73.6 |
| MS.gene52599.t1 | AT1G54870 | 29.614 | 233 | 135 | 8 | 29 | 241 | 74 | 297 | 1.54e-14 | 73.6 |
| MS.gene52599.t1 | AT1G54870 | 29.614 | 233 | 135 | 8 | 29 | 241 | 76 | 299 | 1.60e-14 | 73.6 |
| MS.gene52599.t1 | AT1G67730 | 31.183 | 186 | 117 | 8 | 45 | 224 | 56 | 236 | 1.62e-14 | 73.6 |
| MS.gene52599.t1 | AT2G29150 | 30.348 | 201 | 134 | 6 | 29 | 229 | 8 | 202 | 2.27e-14 | 72.4 |
| MS.gene52599.t1 | AT3G26770 | 28.061 | 196 | 128 | 4 | 38 | 229 | 41 | 227 | 3.38e-14 | 72.4 |
| MS.gene52599.t1 | AT2G29370 | 28.000 | 200 | 139 | 5 | 30 | 229 | 9 | 203 | 4.69e-14 | 71.6 |
| MS.gene52599.t1 | AT3G04000 | 28.218 | 202 | 128 | 7 | 41 | 229 | 17 | 214 | 7.01e-14 | 70.9 |
| MS.gene52599.t1 | AT2G29350 | 28.649 | 185 | 128 | 4 | 45 | 229 | 22 | 202 | 7.79e-14 | 70.1 |
| MS.gene52599.t1 | AT1G52340 | 30.126 | 239 | 160 | 6 | 41 | 276 | 21 | 255 | 1.94e-13 | 70.1 |
| MS.gene52599.t1 | AT2G29350 | 28.649 | 185 | 128 | 4 | 45 | 229 | 22 | 202 | 2.07e-13 | 69.7 |
| MS.gene52599.t1 | AT4G03140 | 29.231 | 195 | 128 | 5 | 38 | 230 | 78 | 264 | 2.19e-13 | 70.5 |
| MS.gene52599.t1 | AT5G19200 | 30.159 | 189 | 121 | 5 | 44 | 229 | 41 | 221 | 7.63e-13 | 68.6 |
| MS.gene52599.t1 | AT5G06060 | 28.351 | 194 | 127 | 4 | 41 | 230 | 12 | 197 | 3.41e-12 | 65.9 |
| MS.gene52599.t1 | AT1G24470 | 29.461 | 241 | 152 | 9 | 5 | 237 | 16 | 246 | 3.50e-12 | 66.6 |
| MS.gene52599.t1 | AT2G47130 | 29.851 | 201 | 126 | 5 | 38 | 233 | 6 | 196 | 3.83e-12 | 65.9 |
| MS.gene52599.t1 | AT1G24360 | 26.154 | 195 | 134 | 5 | 38 | 229 | 74 | 261 | 6.67e-12 | 65.9 |
| MS.gene52599.t1 | AT3G29260 | 29.000 | 200 | 127 | 5 | 36 | 230 | 4 | 193 | 1.01e-11 | 64.7 |
| MS.gene52599.t1 | AT2G29290 | 25.806 | 186 | 132 | 4 | 45 | 229 | 14 | 194 | 2.15e-11 | 63.5 |
| MS.gene52599.t1 | AT2G47120 | 26.872 | 227 | 151 | 5 | 38 | 258 | 6 | 223 | 3.97e-11 | 62.8 |
| MS.gene52599.t1 | AT2G47120 | 26.872 | 227 | 151 | 5 | 38 | 258 | 7 | 224 | 4.25e-11 | 62.8 |
Find 79 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAGTTAATACTATCTTTA+AGG | 0.098716 | 7.4:-25866078 | MS.gene52599:CDS |
| GCTTCAAAATATGCACTAAA+TGG | 0.167869 | 7.4:-25864581 | MS.gene52599:CDS |
| TGCTGCAACTCATGGCTTAA+AGG | 0.188059 | 7.4:-25863386 | MS.gene52599:CDS |
| TATTCTTTGAGCCTGCTATT+TGG | 0.229244 | 7.4:-25862998 | MS.gene52599:CDS |
| GCTCAACAACTTGCAAGTTT+AGG | 0.229765 | 7.4:-25866103 | MS.gene52599:CDS |
| CTCAACAACTTGCAAGTTTA+GGG | 0.247419 | 7.4:-25866102 | MS.gene52599:CDS |
| ACATGCCAACTATTGGTTAT+TGG | 0.249334 | 7.4:-25863178 | MS.gene52599:CDS |
| AGAGTTATTTGCTGTTTCTA+TGG | 0.249623 | 7.4:+25864399 | None:intergenic |
| TCTTCAATTAGTTCATGTTT+TGG | 0.284039 | 7.4:+25866942 | None:intergenic |
| ATTCTTTGAGCCTGCTATTT+GGG | 0.298881 | 7.4:-25862997 | MS.gene52599:CDS |
| GTTCAATACATGCCAACTAT+TGG | 0.332078 | 7.4:-25863185 | MS.gene52599:CDS |
| ATATAATCAACCCCAGAATC+TGG | 0.336512 | 7.4:+25865834 | None:intergenic |
| CGAGTAAAGTCGCAGCTAAA+AGG | 0.336637 | 7.4:-25866037 | MS.gene52599:intron |
| CATCTGGTGAAGATTCTCTT+AGG | 0.351543 | 7.4:-25865887 | MS.gene52599:CDS |
| GCTGCGACTTTACTCGGTTT+AGG | 0.384760 | 7.4:+25866044 | None:intergenic |
| TTCAAATTCGCCACCGCCTA+TGG | 0.388934 | 7.4:-25867073 | MS.gene52599:intron |
| CAAGTTAATACTATCTTTAA+GGG | 0.393685 | 7.4:-25866077 | MS.gene52599:CDS |
| GGAAGCTTGGATATCATATC+AGG | 0.398701 | 7.4:-25863365 | MS.gene52599:intron |
| AAAGACACCTGCCCCAGGTC+AGG | 0.404524 | 7.4:-25864615 | MS.gene52599:CDS |
| TTACCGTTGGATTTAACATC+TGG | 0.405215 | 7.4:-25865903 | MS.gene52599:CDS |
| ACTGGTGCCAGTCGTGGAAT+TGG | 0.416369 | 7.4:-25866817 | MS.gene52599:intron |
| CCTTAAAGATAGTATTAACT+TGG | 0.427983 | 7.4:+25866078 | None:intergenic |
| GAGTTATTTGCTGTTTCTAT+GGG | 0.430931 | 7.4:+25864400 | None:intergenic |
| ATTTGCTGTTTCTATGGGAC+CGG | 0.436779 | 7.4:+25864405 | None:intergenic |
| CAACCCCAGAATCTGGGAAA+AGG | 0.437165 | 7.4:+25865841 | None:intergenic |
| CTCATGGCTTAAAGGAAGCT+TGG | 0.442157 | 7.4:-25863378 | MS.gene52599:CDS |
| TAAATCCAACGGTAAAATCT+TGG | 0.446034 | 7.4:+25865911 | None:intergenic |
| CTTCAAAATATGCACTAAAT+GGG | 0.451304 | 7.4:-25864580 | MS.gene52599:CDS |
| AACTATTGGTTATTGGCTCA+TGG | 0.463798 | 7.4:-25863171 | MS.gene52599:CDS |
| TCCTCAACATGAAAGGTGTC+AGG | 0.479332 | 7.4:+25865054 | None:intergenic |
| ACGATTATTGCTGCAACTCA+TGG | 0.481210 | 7.4:-25863394 | MS.gene52599:CDS |
| AACCCCAGAATCTGGGAAAA+GGG | 0.484607 | 7.4:+25865842 | None:intergenic |
| TGTTATACCAATTCCACGAC+TGG | 0.486639 | 7.4:+25866810 | None:intergenic |
| ACATGAACTAATTGAAGATA+AGG | 0.492696 | 7.4:-25866937 | MS.gene52599:intron |
| TTGGGACAATAACTCTTACA+AGG | 0.493035 | 7.4:-25865079 | MS.gene52599:CDS |
| GCTCTGTCAGAAAGGAATCC+AGG | 0.495667 | 7.4:-25864443 | MS.gene52599:CDS |
| CGGGACAGACAACAGTTACC+TGG | 0.497237 | 7.4:+25864425 | None:intergenic |
| TCCTGACACCTTTCATGTTG+AGG | 0.504874 | 7.4:-25865055 | MS.gene52599:CDS |
| CAGGTAACTGTTGTCTGTCC+CGG | 0.507865 | 7.4:-25864424 | MS.gene52599:CDS |
| AGCAAATAACTCTGGATCGC+AGG | 0.509219 | 7.4:-25864389 | MS.gene52599:CDS |
| ATAGAAACAGCAAATAACTC+TGG | 0.517811 | 7.4:-25864397 | MS.gene52599:CDS |
| TGACACCTTTCATGTTGAGG+AGG | 0.522261 | 7.4:-25865052 | MS.gene52599:CDS |
| CTTCCATTCCTTGCGTTCAG+AGG | 0.522843 | 7.4:-25864555 | MS.gene52599:intron |
| TATAATCAACCCCAGAATCT+GGG | 0.524930 | 7.4:+25865835 | None:intergenic |
| GCTGAGTATACAGCCTGACC+TGG | 0.530220 | 7.4:+25864602 | None:intergenic |
| ATGAGCCAATAACCAATAGT+TGG | 0.534675 | 7.4:+25863173 | None:intergenic |
| TGGATTACTGGTGCCAGTCG+TGG | 0.536159 | 7.4:-25866823 | MS.gene52599:CDS |
| TGGTTGCAGCTCTGTCAGAA+AGG | 0.538033 | 7.4:-25864451 | MS.gene52599:intron |
| GCAAAGGTGCATACCTCAGA+TGG | 0.538341 | 7.4:+25864364 | None:intergenic |
| TGAATAAGAAGAGTAACAAG+AGG | 0.547619 | 7.4:+25867092 | None:intergenic |
| GACACCTTTCATGTTGAGGA+GGG | 0.548237 | 7.4:-25865051 | MS.gene52599:CDS |
| TATCAGATGAGTAGTGCAGC+AGG | 0.548313 | 7.4:-25864638 | MS.gene52599:intron |
| TATACAGCCTGACCTGGGGC+AGG | 0.551365 | 7.4:+25864608 | None:intergenic |
| CTGAGTATACAGCCTGACCT+GGG | 0.554815 | 7.4:+25864603 | None:intergenic |
| TTCATGTTGAGGAGGGGCAA+AGG | 0.555421 | 7.4:-25865044 | MS.gene52599:CDS |
| TGGTGAAGATTCTCTTAGGA+AGG | 0.556573 | 7.4:-25865883 | MS.gene52599:CDS |
| GCAGGAAAGACACCTGCCCC+AGG | 0.558382 | 7.4:-25864620 | MS.gene52599:CDS |
| TTGCCCCTCCTCAACATGAA+AGG | 0.565586 | 7.4:+25865047 | None:intergenic |
| TGGTTATTGGCTCATGGACA+AGG | 0.566273 | 7.4:-25863165 | MS.gene52599:intron |
| ATACCTCTGAACGCAAGGAA+TGG | 0.573698 | 7.4:+25864552 | None:intergenic |
| AGTGGAGGCTGCTAAAGAGA+AGG | 0.582662 | 7.4:-25863029 | MS.gene52599:CDS |
| TGAGAAAATACCATAGGCGG+TGG | 0.588552 | 7.4:+25867063 | None:intergenic |
| TTTGCTGTTTCTATGGGACC+GGG | 0.597122 | 7.4:+25864406 | None:intergenic |
| ACTTTATACCTCTGAACGCA+AGG | 0.597450 | 7.4:+25864547 | None:intergenic |
| ACACCTTTCATGTTGAGGAG+GGG | 0.599857 | 7.4:-25865050 | MS.gene52599:CDS |
| TGGATCGCAGGTTCCATCTG+AGG | 0.608655 | 7.4:-25864377 | MS.gene52599:intron |
| AGATACATGACAGCAAGCAC+AGG | 0.608883 | 7.4:+25863209 | None:intergenic |
| TCACCAGATGTTAAATCCAA+CGG | 0.609295 | 7.4:+25865900 | None:intergenic |
| GTGGAGGCTGCTAAAGAGAA+GGG | 0.610191 | 7.4:-25863028 | MS.gene52599:CDS |
| TTGACAGAAGCGTGTGTCAG+CGG | 0.614113 | 7.4:-25863434 | MS.gene52599:intron |
| TCAACAACTTGCAAGTTTAG+GGG | 0.622807 | 7.4:-25866101 | MS.gene52599:CDS |
| GTAACAAGAGGAAGATACAG+AGG | 0.625818 | 7.4:+25867104 | None:intergenic |
| ACCAGGTAAGCATGCTGACG+AGG | 0.633784 | 7.4:-25865934 | MS.gene52599:intron |
| AAATACCTTGAGACTCTCCT+CGG | 0.639284 | 7.4:+25865259 | None:intergenic |
| CTCCTCGGTTACATCTAAGA+CGG | 0.647183 | 7.4:+25865274 | None:intergenic |
| GAGTGAGAAAATACCATAGG+CGG | 0.656174 | 7.4:+25867060 | None:intergenic |
| TGTAACCGAGGAGAGTCTCA+AGG | 0.656987 | 7.4:-25865264 | MS.gene52599:intron |
| TGAGTATACAGCCTGACCTG+GGG | 0.691014 | 7.4:+25864604 | None:intergenic |
| ATCCGTCTTAGATGTAACCG+AGG | 0.697923 | 7.4:-25865276 | MS.gene52599:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTTTAAACTATGAATA+TGG | - | chr7.4:25866090-25866109 | MS.gene52599:CDS | 10.0% |
| !!! | TCTTTATTTTAACAATTTTT+TGG | - | chr7.4:25863072-25863091 | MS.gene52599:intron | 10.0% |
| !! | AATCTTATACATTTATAAAC+AGG | + | chr7.4:25865424-25865443 | None:intergenic | 15.0% |
| !! | CAAATATTACTAAACTAATA+AGG | + | chr7.4:25866828-25866847 | None:intergenic | 15.0% |
| !! | CAATAAAACATATTAGTTAT+TGG | + | chr7.4:25865358-25865377 | None:intergenic | 15.0% |
| !! | GTAATACCTATTATAAAAAA+CGG | + | chr7.4:25866385-25866404 | None:intergenic | 15.0% |
| !! | TAAGAATGGTTTAAATTAAA+TGG | + | chr7.4:25866273-25866292 | None:intergenic | 15.0% |
| !!! | ATTTTTTCTTTTGAAATAGT+AGG | - | chr7.4:25866054-25866073 | MS.gene52599:CDS | 15.0% |
| !!! | TTTCCTTTTATTTGATTTTA+GGG | - | chr7.4:25863826-25863845 | MS.gene52599:intron | 15.0% |
| !!! | TTTTCCTTTTATTTGATTTT+AGG | - | chr7.4:25863825-25863844 | MS.gene52599:intron | 15.0% |
| !! | AAAACATGTAAACATAAACT+TGG | + | chr7.4:25865964-25865983 | None:intergenic | 20.0% |
| !! | AATGACTTTATATAAATGAC+TGG | - | chr7.4:25867028-25867047 | MS.gene52599:intron | 20.0% |
| !! | AGAACTTAATCATTTCATTA+TGG | + | chr7.4:25863221-25863240 | None:intergenic | 20.0% |
| !! | ATACATTTATAAACAGGAAA+TGG | + | chr7.4:25865418-25865437 | None:intergenic | 20.0% |
| !! | CAAGTTAATACTATCTTTAA+GGG | - | chr7.4:25864020-25864039 | MS.gene52599:intron | 20.0% |
| !! | CTAGTAAGTGATATAATTTA+GGG | - | chr7.4:25863534-25863553 | MS.gene52599:intron | 20.0% |
| !! | TAATCATTTCATTATGGTAT+TGG | + | chr7.4:25863215-25863234 | None:intergenic | 20.0% |
| !! | TACAAATAATGAAAAGATTC+TGG | + | chr7.4:25863899-25863918 | None:intergenic | 20.0% |
| !! | TACATTTATAAACAGGAAAT+GGG | + | chr7.4:25865417-25865436 | None:intergenic | 20.0% |
| !! | TAGAAAATACATCATTATTG+TGG | - | chr7.4:25865161-25865180 | MS.gene52599:intron | 20.0% |
| !! | TCAGGTAAAAAAATTGTATT+AGG | - | chr7.4:25866750-25866769 | MS.gene52599:intron | 20.0% |
| !!! | AAATAGCCGTTTTTTATAAT+AGG | - | chr7.4:25866376-25866395 | MS.gene52599:intron | 20.0% |
| !!! | AATTTTGCCTTTAAATTGTA+GGG | + | chr7.4:25863672-25863691 | None:intergenic | 20.0% |
| !!! | ACTGTTTTGATCAATTTATT+AGG | - | chr7.4:25863104-25863123 | MS.gene52599:intron | 20.0% |
| !!! | ATAATCTCTTATTTTGGTTA+TGG | - | chr7.4:25865108-25865127 | MS.gene52599:intron | 20.0% |
| !!! | GTCAAGACATAATTTTAAAA+GGG | + | chr7.4:25866648-25866667 | None:intergenic | 20.0% |
| !!! | TCTTTGATAATCTCTTATTT+TGG | - | chr7.4:25865102-25865121 | MS.gene52599:CDS | 20.0% |
| !!! | TGTCAAGACATAATTTTAAA+AGG | + | chr7.4:25866649-25866668 | None:intergenic | 20.0% |
| !!! | TTTTGAAAGAAAACTAAAAG+CGG | + | chr7.4:25864925-25864944 | None:intergenic | 20.0% |
| ! | AACTACACTATATACTTGAA+CGG | - | chr7.4:25865248-25865267 | MS.gene52599:intron | 25.0% |
| ! | AAGCCCTAAAATCAAATAAA+AGG | + | chr7.4:25863832-25863851 | None:intergenic | 25.0% |
| ! | AAGTTTATACTGTAAATTCC+AGG | + | chr7.4:25866526-25866545 | None:intergenic | 25.0% |
| ! | AATTTGATCAAAAACACTTG+TGG | + | chr7.4:25863761-25863780 | None:intergenic | 25.0% |
| ! | ACATGAACTAATTGAAGATA+AGG | - | chr7.4:25863160-25863179 | MS.gene52599:intron | 25.0% |
| ! | ACATGTAGTATACATAAACT+TGG | + | chr7.4:25865899-25865918 | None:intergenic | 25.0% |
| ! | ACATTTATAAACAGGAAATG+GGG | + | chr7.4:25865416-25865435 | None:intergenic | 25.0% |
| ! | ACTTTATATAAATGACTGGT+AGG | - | chr7.4:25867032-25867051 | MS.gene52599:intron | 25.0% |
| ! | ATATGATCTACACTTCTTAT+TGG | - | chr7.4:25866331-25866350 | MS.gene52599:intron | 25.0% |
| ! | ATCAATGAATGTATATGAAG+GGG | - | chr7.4:25863963-25863982 | MS.gene52599:intron | 25.0% |
| ! | ATTACCAGAAAAATAAAGCA+GGG | + | chr7.4:25863728-25863747 | None:intergenic | 25.0% |
| ! | ATTCAATTTGATTAACCCTT+AGG | - | chr7.4:25863700-25863719 | MS.gene52599:intron | 25.0% |
| ! | ATTTGATCAAAAACACTTGT+GGG | + | chr7.4:25863760-25863779 | None:intergenic | 25.0% |
| ! | CATCAATGAATGTATATGAA+GGG | - | chr7.4:25863962-25863981 | MS.gene52599:intron | 25.0% |
| ! | CCAAGTTAATACTATCTTTA+AGG | - | chr7.4:25864019-25864038 | MS.gene52599:intron | 25.0% |
| ! | CCTAAATTATATCACTTACT+AGG | + | chr7.4:25863536-25863555 | None:intergenic | 25.0% |
| ! | CCTAGTAAGTGATATAATTT+AGG | - | chr7.4:25863533-25863552 | MS.gene52599:intron | 25.0% |
| ! | CCTTAAAGATAGTATTAACT+TGG | + | chr7.4:25864022-25864041 | None:intergenic | 25.0% |
| ! | CTACAATTTAAAGGCAAAAT+TGG | - | chr7.4:25863671-25863690 | MS.gene52599:intron | 25.0% |
| ! | CTTCAAAATATGCACTAAAT+GGG | - | chr7.4:25865517-25865536 | MS.gene52599:intron | 25.0% |
| ! | GTAATATTTGTTCACTCAAT+CGG | - | chr7.4:25866838-25866857 | MS.gene52599:intron | 25.0% |
| ! | TATGAAAGTGATTTCATTGT+GGG | + | chr7.4:25863366-25863385 | None:intergenic | 25.0% |
| ! | TATGATCTACACTTCTTATT+GGG | - | chr7.4:25866332-25866351 | MS.gene52599:intron | 25.0% |
| ! | TATTTGTTTCATTTCTTTCC+AGG | - | chr7.4:25863246-25863265 | MS.gene52599:intron | 25.0% |
| ! | TCACAGATATAAATGAGTAA+CGG | + | chr7.4:25864096-25864115 | None:intergenic | 25.0% |
| ! | TCATATACATTCATTGATGA+GGG | + | chr7.4:25863961-25863980 | None:intergenic | 25.0% |
| ! | TCATCAATGAATGTATATGA+AGG | - | chr7.4:25863961-25863980 | MS.gene52599:intron | 25.0% |
| ! | TCATCATCCTTATATCATTA+TGG | + | chr7.4:25864680-25864699 | None:intergenic | 25.0% |
| ! | TGCAACCATAAAAAAATTAG+CGG | + | chr7.4:25865634-25865653 | None:intergenic | 25.0% |
| ! | TTATGAAAGTGATTTCATTG+TGG | + | chr7.4:25863367-25863386 | None:intergenic | 25.0% |
| ! | TTCATATACATTCATTGATG+AGG | + | chr7.4:25863962-25863981 | None:intergenic | 25.0% |
| ! | TTTATATCTGTGAACAGATA+TGG | - | chr7.4:25864103-25864122 | MS.gene52599:intron | 25.0% |
| ! | TTTGAAAGAAAACTAAAAGC+GGG | + | chr7.4:25864924-25864943 | None:intergenic | 25.0% |
| !! | AAATCACACATTAATGGATA+AGG | + | chr7.4:25864136-25864155 | None:intergenic | 25.0% |
| !! | ACATTTGATGTCAATGTTTT+TGG | - | chr7.4:25864999-25865018 | MS.gene52599:intron | 25.0% |
| !! | ATTTTGCCTTTAAATTGTAG+GGG | + | chr7.4:25863671-25863690 | None:intergenic | 25.0% |
| !! | CAATTTTGCCTTTAAATTGT+AGG | + | chr7.4:25863673-25863692 | None:intergenic | 25.0% |
| !! | CATTTGATGTCAATGTTTTT+GGG | - | chr7.4:25865000-25865019 | MS.gene52599:intron | 25.0% |
| !! | TCTTCAATTAGTTCATGTTT+TGG | + | chr7.4:25863158-25863177 | None:intergenic | 25.0% |
| !! | TGTCATTTGTTTATATCTGT+AGG | - | chr7.4:25864480-25864499 | MS.gene52599:intron | 25.0% |
| !! | TTTTCCAATAGAAAAACTCT+GGG | + | chr7.4:25866305-25866324 | None:intergenic | 25.0% |
| !!! | ATGTATACTACATGTTTTGA+AGG | - | chr7.4:25865904-25865923 | MS.gene52599:CDS | 25.0% |
| ACAAACAAGCTAGAACATAA+AGG | + | chr7.4:25866551-25866570 | None:intergenic | 30.0% | |
| ACACATAGTATCTCAAAAAG+AGG | + | chr7.4:25864457-25864476 | None:intergenic | 30.0% | |
| ACTAGATGAAAGTTATCAGA+AGG | - | chr7.4:25863573-25863592 | MS.gene52599:intron | 30.0% | |
| ACTCTTTACAAGTTAACAGA+AGG | + | chr7.4:25863476-25863495 | None:intergenic | 30.0% | |
| AGTTAATGAAGATACTTGCA+TGG | + | chr7.4:25865833-25865852 | None:intergenic | 30.0% | |
| ATAGAAACAGCAAATAACTC+TGG | - | chr7.4:25865700-25865719 | MS.gene52599:intron | 30.0% | |
| ATTCCGAAACTGGAATTAAA+TGG | + | chr7.4:25863796-25863815 | None:intergenic | 30.0% | |
| CAAACAAGCTAGAACATAAA+GGG | + | chr7.4:25866550-25866569 | None:intergenic | 30.0% | |
| CATTACCAGAAAAATAAAGC+AGG | + | chr7.4:25863729-25863748 | None:intergenic | 30.0% | |
| CCTATAAACGTAAAACAAGA+GGG | - | chr7.4:25864411-25864430 | MS.gene52599:CDS | 30.0% | |
| CGTAGCAAAATTATGTTATG+TGG | - | chr7.4:25865137-25865156 | MS.gene52599:intron | 30.0% | |
| CTAGATGAAAGTTATCAGAA+GGG | - | chr7.4:25863574-25863593 | MS.gene52599:intron | 30.0% | |
| CTATAAACGTAAAACAAGAG+GGG | - | chr7.4:25864412-25864431 | MS.gene52599:CDS | 30.0% | |
| CTGATATAACAAGCATATGT+AGG | + | chr7.4:25864383-25864402 | None:intergenic | 30.0% | |
| GCTTCAAAATATGCACTAAA+TGG | - | chr7.4:25865516-25865535 | MS.gene52599:intron | 30.0% | |
| GTATGCAAATCACACATTAA+TGG | + | chr7.4:25864142-25864161 | None:intergenic | 30.0% | |
| GTCTTTCTTTACACTAACAA+TGG | + | chr7.4:25865770-25865789 | None:intergenic | 30.0% | |
| TAAATCCAACGGTAAAATCT+TGG | + | chr7.4:25864189-25864208 | None:intergenic | 30.0% | |
| TATAAACGTAAAACAAGAGG+GGG | - | chr7.4:25864413-25864432 | MS.gene52599:CDS | 30.0% | |
| TATATAAATGACTGGTAGGT+TGG | - | chr7.4:25867036-25867055 | MS.gene52599:intron | 30.0% | |
| TATTTCATGAATGTGACTCT+TGG | - | chr7.4:25864856-25864875 | MS.gene52599:intron | 30.0% | |
| TGAACATATCAGAATTTGCA+TGG | - | chr7.4:25864348-25864367 | MS.gene52599:intron | 30.0% | |
| TGAATAAGAAGAGTAACAAG+AGG | + | chr7.4:25863008-25863027 | None:intergenic | 30.0% | |
| TGGTTGATTGCTTTATCTAA+TGG | - | chr7.4:25864319-25864338 | MS.gene52599:intron | 30.0% | |
| TTAAACCATTCTTAATGCTC+TGG | - | chr7.4:25866279-25866298 | MS.gene52599:intron | 30.0% | |
| TTACACGCCATAATGATATA+AGG | - | chr7.4:25864670-25864689 | MS.gene52599:intron | 30.0% | |
| TTGAAAGAAAACTAAAAGCG+GGG | + | chr7.4:25864923-25864942 | None:intergenic | 30.0% | |
| ! | AAAAGTCTTTTTCCACTATG+TGG | - | chr7.4:25866185-25866204 | MS.gene52599:intron | 30.0% |
| ! | AAGAAGTGTAGATCATATGA+AGG | + | chr7.4:25866329-25866348 | None:intergenic | 30.0% |
| ! | AGAAGTGTAGATCATATGAA+GGG | + | chr7.4:25866328-25866347 | None:intergenic | 30.0% |
| ! | ATAAGGATGATGATTTGTGA+GGG | - | chr7.4:25864687-25864706 | MS.gene52599:intron | 30.0% |
| ! | ATGCCATTTAATTCCAGTTT+CGG | - | chr7.4:25863790-25863809 | MS.gene52599:intron | 30.0% |
| ! | GTTTTCCAATAGAAAAACTC+TGG | + | chr7.4:25866306-25866325 | None:intergenic | 30.0% |
| ! | TAACTTCAGACACATTTTGA+TGG | - | chr7.4:25864552-25864571 | MS.gene52599:intron | 30.0% |
| ! | TATAAGGATGATGATTTGTG+AGG | - | chr7.4:25864686-25864705 | MS.gene52599:intron | 30.0% |
| ! | TTTGAAATAGTAGGTATGCA+CGG | - | chr7.4:25866063-25866082 | MS.gene52599:CDS | 30.0% |
| !! | AACTTCAGACACATTTTGAT+GGG | - | chr7.4:25864553-25864572 | MS.gene52599:intron | 30.0% |
| !! | AGAGTTATTTGCTGTTTCTA+TGG | + | chr7.4:25865701-25865720 | None:intergenic | 30.0% |
| !! | GAGTTATTTGCTGTTTCTAT+GGG | + | chr7.4:25865700-25865719 | None:intergenic | 30.0% |
| !!! | ATGCACCGCTAATTTTTTTA+TGG | - | chr7.4:25865626-25865645 | MS.gene52599:intron | 30.0% |
| !!! | GGGAACATTTTTTAAAGCTT+TGG | + | chr7.4:25864898-25864917 | None:intergenic | 30.0% |
| !!! | TCATTTCTTTCCAGGTTTTT+TGG | - | chr7.4:25863254-25863273 | MS.gene52599:intron | 30.0% |
| AAAAACGGCTATTTACAGTG+TGG | + | chr7.4:25866370-25866389 | None:intergenic | 35.0% | |
| AAAACAGTAGATTCCGAAAC+TGG | + | chr7.4:25863806-25863825 | None:intergenic | 35.0% | |
| AAAATAAAGCAGGGAACCTA+AGG | + | chr7.4:25863719-25863738 | None:intergenic | 35.0% | |
| AAATAAAGCAGGGAACCTAA+GGG | + | chr7.4:25863718-25863737 | None:intergenic | 35.0% | |
| AAGGCACAAAAGTTGAAAAC+TGG | + | chr7.4:25866809-25866828 | None:intergenic | 35.0% | |
| ACATCAAATGTTGCCTAATC+AGG | + | chr7.4:25864990-25865009 | None:intergenic | 35.0% | |
| ACTAACAATGGATGCTTAGT+TGG | + | chr7.4:25865758-25865777 | None:intergenic | 35.0% | |
| AGGGAAAGAACAAACTTCAA+TGG | + | chr7.4:25866629-25866648 | None:intergenic | 35.0% | |
| AGTGAGTGAGAAAATACCAT+AGG | + | chr7.4:25863043-25863062 | None:intergenic | 35.0% | |
| ATATAATCAACCCCAGAATC+TGG | + | chr7.4:25864266-25864285 | None:intergenic | 35.0% | |
| ATGAGCCAATAACCAATAGT+TGG | + | chr7.4:25866927-25866946 | None:intergenic | 35.0% | |
| CATTGGTAGAGGATAGTTTA+AGG | + | chr7.4:25863862-25863881 | None:intergenic | 35.0% | |
| CTCAACAACTTGCAAGTTTA+GGG | - | chr7.4:25863995-25864014 | MS.gene52599:intron | 35.0% | |
| GAAACTGGAATTAAATGGCA+TGG | + | chr7.4:25863791-25863810 | None:intergenic | 35.0% | |
| GAACACTAGAATCAAGAAAG+TGG | - | chr7.4:25864629-25864648 | MS.gene52599:CDS | 35.0% | |
| GCCTATAAACGTAAAACAAG+AGG | - | chr7.4:25864410-25864429 | MS.gene52599:CDS | 35.0% | |
| GTTCAATACATGCCAACTAT+TGG | - | chr7.4:25866912-25866931 | MS.gene52599:intron | 35.0% | |
| TAAAGCAATCAACCACTTAC+AGG | + | chr7.4:25864314-25864333 | None:intergenic | 35.0% | |
| TAATGAAGATACTTGCATGG+TGG | + | chr7.4:25865830-25865849 | None:intergenic | 35.0% | |
| TATAATCAACCCCAGAATCT+GGG | + | chr7.4:25864265-25864284 | None:intergenic | 35.0% | |
| TATTCTTTGAGCCTGCTATT+TGG | - | chr7.4:25867099-25867118 | MS.gene52599:CDS | 35.0% | |
| TCAACAACTTGCAAGTTTAG+GGG | - | chr7.4:25863996-25864015 | MS.gene52599:intron | 35.0% | |
| TCACCAGATGTTAAATCCAA+CGG | + | chr7.4:25864200-25864219 | None:intergenic | 35.0% | |
| TCTTGATTTAGCAATCTCAG+TGG | + | chr7.4:25865862-25865881 | None:intergenic | 35.0% | |
| TGCAAAGAAATCATTGGTAG+AGG | + | chr7.4:25863873-25863892 | None:intergenic | 35.0% | |
| TTACCGTTGGATTTAACATC+TGG | - | chr7.4:25864194-25864213 | MS.gene52599:intron | 35.0% | |
| TTCAAGACAGAAGACAAGAT+AGG | + | chr7.4:25866440-25866459 | None:intergenic | 35.0% | |
| TTGAAATAGTAGGTATGCAC+GGG | - | chr7.4:25866064-25866083 | MS.gene52599:CDS | 35.0% | |
| TTGGGACAATAACTCTTACA+AGG | - | chr7.4:25865018-25865037 | MS.gene52599:intron | 35.0% | |
| TTGTCTCTTCGCAAATTTCA+GGG | - | chr7.4:25863632-25863651 | MS.gene52599:intron | 35.0% | |
| TTGTCTTCTGTCTTGAAACA+TGG | - | chr7.4:25866443-25866462 | MS.gene52599:intron | 35.0% | |
| TTTGAATACGTCTGACAACT+TGG | - | chr7.4:25863449-25863468 | MS.gene52599:intron | 35.0% | |
| TTTGTCTCTTCGCAAATTTC+AGG | - | chr7.4:25863631-25863650 | MS.gene52599:intron | 35.0% | |
| ! | ACATGCCAACTATTGGTTAT+TGG | - | chr7.4:25866919-25866938 | MS.gene52599:intron | 35.0% |
| ! | ATTCTTTGAGCCTGCTATTT+GGG | - | chr7.4:25867100-25867119 | MS.gene52599:CDS | 35.0% |
| ! | TGGCTTTGCAAAGAAATCAT+TGG | + | chr7.4:25863879-25863898 | None:intergenic | 35.0% |
| ! | TTACTCCTTTTCTCCTGATT+AGG | - | chr7.4:25864974-25864993 | MS.gene52599:intron | 35.0% |
| ! | TTTTTCCACTATGTGGATTC+AGG | - | chr7.4:25866192-25866211 | MS.gene52599:intron | 35.0% |
| !! | AACTATTGGTTATTGGCTCA+TGG | - | chr7.4:25866926-25866945 | MS.gene52599:intron | 35.0% |
| !!! | CCCTCTTGTTTTACGTTTAT+AGG | + | chr7.4:25864414-25864433 | None:intergenic | 35.0% |
| !!! | TTCCAGGTTTTTTGGATTAC+TGG | - | chr7.4:25863262-25863281 | MS.gene52599:intron | 35.0% |
| AAAGAAAACTAAAAGCGGGG+AGG | + | chr7.4:25864920-25864939 | None:intergenic | 40.0% | |
| AAATACCTTGAGACTCTCCT+CGG | + | chr7.4:25864841-25864860 | None:intergenic | 40.0% | |
| AAGAAAACTAAAAGCGGGGA+GGG | + | chr7.4:25864919-25864938 | None:intergenic | 40.0% | |
| AATGGATGCTTAGTTGGCAA+AGG | + | chr7.4:25865752-25865771 | None:intergenic | 40.0% | |
| ACGATTATTGCTGCAACTCA+TGG | - | chr7.4:25866703-25866722 | MS.gene52599:intron | 40.0% | |
| ACTTTATACCTCTGAACGCA+AGG | + | chr7.4:25865553-25865572 | None:intergenic | 40.0% | |
| CACCAGTAATCCAAAAAACC+TGG | + | chr7.4:25863267-25863286 | None:intergenic | 40.0% | |
| CATCTGGTGAAGATTCTCTT+AGG | - | chr7.4:25864210-25864229 | MS.gene52599:intron | 40.0% | |
| GAGTGAGAAAATACCATAGG+CGG | + | chr7.4:25863040-25863059 | None:intergenic | 40.0% | |
| GCTCAACAACTTGCAAGTTT+AGG | - | chr7.4:25863994-25864013 | MS.gene52599:intron | 40.0% | |
| GGAAGCTTGGATATCATATC+AGG | - | chr7.4:25866732-25866751 | MS.gene52599:intron | 40.0% | |
| GTAACAAGAGGAAGATACAG+AGG | + | chr7.4:25862996-25863015 | None:intergenic | 40.0% | |
| TGGTGAAGATTCTCTTAGGA+AGG | - | chr7.4:25864214-25864233 | MS.gene52599:intron | 40.0% | |
| TGTCTCTTCGCAAATTTCAG+GGG | - | chr7.4:25863633-25863652 | MS.gene52599:intron | 40.0% | |
| TGTTATACCAATTCCACGAC+TGG | + | chr7.4:25863290-25863309 | None:intergenic | 40.0% | |
| TGTTGCCTAATCAGGAGAAA+AGG | + | chr7.4:25864982-25865001 | None:intergenic | 40.0% | |
| TTGAATTACGTCGAGCAACT+TGG | + | chr7.4:25863600-25863619 | None:intergenic | 40.0% | |
| ! | AATCCCTTTTCCCAGATTCT+GGG | - | chr7.4:25864252-25864271 | MS.gene52599:intron | 40.0% |
| ! | ATTGAAGAGAAGCACAAGCA+AGG | - | chr7.4:25866493-25866512 | MS.gene52599:intron | 40.0% |
| ! | CCTGCTATTTGGGAAAAAGA+AGG | - | chr7.4:25867110-25867129 | MS.gene52599:CDS | 40.0% |
| ! | CCTTCTTTTTCCCAAATAGC+AGG | + | chr7.4:25867113-25867132 | None:intergenic | 40.0% |
| !! | ATTTGCTGTTTCTATGGGAC+CGG | + | chr7.4:25865695-25865714 | None:intergenic | 40.0% |
| !! | CTTTTAGCTGCGACTTTACT+CGG | + | chr7.4:25864062-25864081 | None:intergenic | 40.0% |
| !! | GTAGGTTGGTAAAAATCGAG+TGG | - | chr7.4:25867050-25867069 | MS.gene52599:intron | 40.0% |
| !! | GTCATTTTGTGGTGGTATGT+GGG | - | chr7.4:25865075-25865094 | MS.gene52599:CDS | 40.0% |
| !!! | GGTTCCCTGCTTTATTTTTC+TGG | - | chr7.4:25863721-25863740 | MS.gene52599:intron | 40.0% |
| AAATTTCAGGGGGTAAGTGC+TGG | - | chr7.4:25863644-25863663 | MS.gene52599:intron | 45.0% | |
| AACCCCAGAATCTGGGAAAA+GGG | + | chr7.4:25864258-25864277 | None:intergenic | 45.0% | |
| ACACCTTTCATGTTGAGGAG+GGG | - | chr7.4:25865047-25865066 | MS.gene52599:CDS | 45.0% | |
| AGAAAACTAAAAGCGGGGAG+GGG | + | chr7.4:25864918-25864937 | None:intergenic | 45.0% | |
| AGATACATGACAGCAAGCAC+AGG | + | chr7.4:25866891-25866910 | None:intergenic | 45.0% | |
| AGCAAATAACTCTGGATCGC+AGG | - | chr7.4:25865708-25865727 | MS.gene52599:intron | 45.0% | |
| ATACCTCTGAACGCAAGGAA+TGG | + | chr7.4:25865548-25865567 | None:intergenic | 45.0% | |
| ATCCGTCTTAGATGTAACCG+AGG | - | chr7.4:25864821-25864840 | MS.gene52599:intron | 45.0% | |
| CGAGTAAAGTCGCAGCTAAA+AGG | - | chr7.4:25864060-25864079 | MS.gene52599:intron | 45.0% | |
| CTCATGGCTTAAAGGAAGCT+TGG | - | chr7.4:25866719-25866738 | MS.gene52599:intron | 45.0% | |
| CTCCTCGGTTACATCTAAGA+CGG | + | chr7.4:25864826-25864845 | None:intergenic | 45.0% | |
| CTTAGCATAGCCAGAAGCTA+TGG | + | chr7.4:25865335-25865354 | None:intergenic | 45.0% | |
| GACACCTTTCATGTTGAGGA+GGG | - | chr7.4:25865046-25865065 | MS.gene52599:CDS | 45.0% | |
| GCAAGATGTTTGTGACTGCA+AGG | - | chr7.4:25865192-25865211 | MS.gene52599:intron | 45.0% | |
| GCTGGACCCCTACAATTTAA+AGG | - | chr7.4:25863662-25863681 | MS.gene52599:intron | 45.0% | |
| GTCTCTTCGCAAATTTCAGG+GGG | - | chr7.4:25863634-25863653 | MS.gene52599:intron | 45.0% | |
| TATCAGATGAGTAGTGCAGC+AGG | - | chr7.4:25865459-25865478 | MS.gene52599:intron | 45.0% | |
| TCCTGACACCTTTCATGTTG+AGG | - | chr7.4:25865042-25865061 | MS.gene52599:CDS | 45.0% | |
| TGACACCTTTCATGTTGAGG+AGG | - | chr7.4:25865045-25865064 | MS.gene52599:CDS | 45.0% | |
| TGAGAAAATACCATAGGCGG+TGG | + | chr7.4:25863037-25863056 | None:intergenic | 45.0% | |
| TGCTGCAACTCATGGCTTAA+AGG | - | chr7.4:25866711-25866730 | MS.gene52599:intron | 45.0% | |
| ! | ATCCCTTTTCCCAGATTCTG+GGG | - | chr7.4:25864253-25864272 | MS.gene52599:intron | 45.0% |
| ! | CTGGCCCAGAGTTTTTCTAT+TGG | - | chr7.4:25866298-25866317 | MS.gene52599:intron | 45.0% |
| ! | GAATCCCTTTTCCCAGATTC+TGG | - | chr7.4:25864251-25864270 | MS.gene52599:intron | 45.0% |
| ! | TGTGTGATTTGCATACCACC+AGG | - | chr7.4:25864146-25864165 | MS.gene52599:intron | 45.0% |
| !! | GGTCATTTTGTGGTGGTATG+TGG | - | chr7.4:25865074-25865093 | MS.gene52599:CDS | 45.0% |
| !! | GGTTGGTAAAAATCGAGTGG+AGG | - | chr7.4:25867053-25867072 | MS.gene52599:intron | 45.0% |
| !! | TCCTCAACATGAAAGGTGTC+AGG | + | chr7.4:25865046-25865065 | None:intergenic | 45.0% |
| !! | TGGTTATTGGCTCATGGACA+AGG | - | chr7.4:25866932-25866951 | MS.gene52599:intron | 45.0% |
| !! | TTTGCTGTTTCTATGGGACC+GGG | + | chr7.4:25865694-25865713 | None:intergenic | 45.0% |
| !!! | TAATAATAATTTTAAATGTT+CGG | - | chr7.4:25865272-25865291 | MS.gene52599:CDS | 5.0% |
| AGCAGCCTGAATCCACATAG+TGG | + | chr7.4:25866200-25866219 | None:intergenic | 50.0% | |
| AGTGGAGGCTGCTAAAGAGA+AGG | - | chr7.4:25867068-25867087 | MS.gene52599:intron | 50.0% | |
| CAACCCCAGAATCTGGGAAA+AGG | + | chr7.4:25864259-25864278 | None:intergenic | 50.0% | |
| CACAAGCAAGGTCTTAGACC+TGG | - | chr7.4:25866505-25866524 | MS.gene52599:intron | 50.0% | |
| CAGGTAACTGTTGTCTGTCC+CGG | - | chr7.4:25865673-25865692 | MS.gene52599:intron | 50.0% | |
| CCACTTGAATGTGTGTCGTG+CGG | - | chr7.4:25866577-25866596 | MS.gene52599:intron | 50.0% | |
| CTGAGTATACAGCCTGACCT+GGG | + | chr7.4:25865497-25865516 | None:intergenic | 50.0% | |
| CTTCCATTCCTTGCGTTCAG+AGG | - | chr7.4:25865542-25865561 | MS.gene52599:intron | 50.0% | |
| GCTCTGTCAGAAAGGAATCC+AGG | - | chr7.4:25865654-25865673 | MS.gene52599:intron | 50.0% | |
| GCTGCGACTTTACTCGGTTT+AGG | + | chr7.4:25864056-25864075 | None:intergenic | 50.0% | |
| GCTTATGAGCGTCCTGTAAG+TGG | - | chr7.4:25864299-25864318 | MS.gene52599:intron | 50.0% | |
| GTCTTGTGTGCCATAGCTTC+TGG | - | chr7.4:25865322-25865341 | MS.gene52599:intron | 50.0% | |
| GTGGAGGCTGCTAAAGAGAA+GGG | - | chr7.4:25867069-25867088 | MS.gene52599:intron | 50.0% | |
| TGAGTATACAGCCTGACCTG+GGG | + | chr7.4:25865496-25865515 | None:intergenic | 50.0% | |
| TGGTTGCAGCTCTGTCAGAA+AGG | - | chr7.4:25865646-25865665 | MS.gene52599:intron | 50.0% | |
| TGTAACCGAGGAGAGTCTCA+AGG | - | chr7.4:25864833-25864852 | MS.gene52599:intron | 50.0% | |
| TTCAAATTCGCCACCGCCTA+TGG | - | chr7.4:25863024-25863043 | MS.gene52599:CDS | 50.0% | |
| TTCATGTTGAGGAGGGGCAA+AGG | - | chr7.4:25865053-25865072 | MS.gene52599:CDS | 50.0% | |
| TTGCCCCTCCTCAACATGAA+AGG | + | chr7.4:25865053-25865072 | None:intergenic | 50.0% | |
| ! | CGAGGCCAAGATTTTACCGT+TGG | - | chr7.4:25864181-25864200 | MS.gene52599:intron | 50.0% |
| ! | CTGGGCCAGAGCATTAAGAA+TGG | + | chr7.4:25866287-25866306 | None:intergenic | 50.0% |
| ! | GCAAAGGTGCATACCTCAGA+TGG | + | chr7.4:25865736-25865755 | None:intergenic | 50.0% |
| ! | TTGACAGAAGCGTGTGTCAG+CGG | - | chr7.4:25866663-25866682 | MS.gene52599:intron | 50.0% |
| !! | GAGGGGCAAAGGTCATTTTG+TGG | - | chr7.4:25865064-25865083 | MS.gene52599:CDS | 50.0% |
| !! | GGGCAAAGGTCATTTTGTGG+TGG | - | chr7.4:25865067-25865086 | MS.gene52599:CDS | 50.0% |
| ACCAGGTAAGCATGCTGACG+AGG | - | chr7.4:25864163-25864182 | MS.gene52599:intron | 55.0% | |
| CCGCACGACACACATTCAAG+TGG | + | chr7.4:25866580-25866599 | None:intergenic | 55.0% | |
| CGGGACAGACAACAGTTACC+TGG | + | chr7.4:25865675-25865694 | None:intergenic | 55.0% | |
| GCTGAGTATACAGCCTGACC+TGG | + | chr7.4:25865498-25865517 | None:intergenic | 55.0% | |
| TCGTCAGCATGCTTACCTGG+TGG | + | chr7.4:25864164-25864183 | None:intergenic | 55.0% | |
| TGGATCGCAGGTTCCATCTG+AGG | - | chr7.4:25865720-25865739 | MS.gene52599:intron | 55.0% | |
| ! | ACTGGTGCCAGTCGTGGAAT+TGG | - | chr7.4:25863280-25863299 | MS.gene52599:intron | 55.0% |
| ! | TGATGGGTGTGCTTGCATGC+TGG | - | chr7.4:25864569-25864588 | MS.gene52599:CDS | 55.0% |
| ! | TGGATTACTGGTGCCAGTCG+TGG | - | chr7.4:25863274-25863293 | MS.gene52599:intron | 55.0% |
| AAAGACACCTGCCCCAGGTC+AGG | - | chr7.4:25865482-25865501 | MS.gene52599:intron | 60.0% | |
| GCCTCGTCAGCATGCTTACC+TGG | + | chr7.4:25864167-25864186 | None:intergenic | 60.0% | |
| TATACAGCCTGACCTGGGGC+AGG | + | chr7.4:25865492-25865511 | None:intergenic | 60.0% | |
| GCAGGAAAGACACCTGCCCC+AGG | - | chr7.4:25865477-25865496 | MS.gene52599:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 25862979 | 25867140 | 25862979 | ID=MS.gene52599 |
| chr7.4 | mRNA | 25862979 | 25867140 | 25862979 | ID=MS.gene52599.t1;Parent=MS.gene52599 |
| chr7.4 | exon | 25867074 | 25867140 | 25867074 | ID=MS.gene52599.t1.exon1;Parent=MS.gene52599.t1 |
| chr7.4 | CDS | 25867074 | 25867140 | 25867074 | ID=cds.MS.gene52599.t1;Parent=MS.gene52599.t1 |
| chr7.4 | exon | 25866938 | 25866993 | 25866938 | ID=MS.gene52599.t1.exon2;Parent=MS.gene52599.t1 |
| chr7.4 | CDS | 25866938 | 25866993 | 25866938 | ID=cds.MS.gene52599.t1;Parent=MS.gene52599.t1 |
| chr7.4 | exon | 25866818 | 25866851 | 25866818 | ID=MS.gene52599.t1.exon3;Parent=MS.gene52599.t1 |
| chr7.4 | CDS | 25866818 | 25866851 | 25866818 | ID=cds.MS.gene52599.t1;Parent=MS.gene52599.t1 |
| chr7.4 | exon | 25866038 | 25866136 | 25866038 | ID=MS.gene52599.t1.exon4;Parent=MS.gene52599.t1 |
| chr7.4 | CDS | 25866038 | 25866136 | 25866038 | ID=cds.MS.gene52599.t1;Parent=MS.gene52599.t1 |
| chr7.4 | exon | 25865806 | 25865951 | 25865806 | ID=MS.gene52599.t1.exon5;Parent=MS.gene52599.t1 |
| chr7.4 | CDS | 25865806 | 25865951 | 25865806 | ID=cds.MS.gene52599.t1;Parent=MS.gene52599.t1 |
| chr7.4 | exon | 25865265 | 25865303 | 25865265 | ID=MS.gene52599.t1.exon6;Parent=MS.gene52599.t1 |
| chr7.4 | CDS | 25865265 | 25865303 | 25865265 | ID=cds.MS.gene52599.t1;Parent=MS.gene52599.t1 |
| chr7.4 | exon | 25865031 | 25865123 | 25865031 | ID=MS.gene52599.t1.exon7;Parent=MS.gene52599.t1 |
| chr7.4 | CDS | 25865031 | 25865123 | 25865031 | ID=cds.MS.gene52599.t1;Parent=MS.gene52599.t1 |
| chr7.4 | exon | 25864556 | 25864654 | 25864556 | ID=MS.gene52599.t1.exon8;Parent=MS.gene52599.t1 |
| chr7.4 | CDS | 25864556 | 25864654 | 25864556 | ID=cds.MS.gene52599.t1;Parent=MS.gene52599.t1 |
| chr7.4 | exon | 25864378 | 25864464 | 25864378 | ID=MS.gene52599.t1.exon9;Parent=MS.gene52599.t1 |
| chr7.4 | CDS | 25864378 | 25864464 | 25864378 | ID=cds.MS.gene52599.t1;Parent=MS.gene52599.t1 |
| chr7.4 | exon | 25863366 | 25863449 | 25863366 | ID=MS.gene52599.t1.exon10;Parent=MS.gene52599.t1 |
| chr7.4 | CDS | 25863366 | 25863449 | 25863366 | ID=cds.MS.gene52599.t1;Parent=MS.gene52599.t1 |
| chr7.4 | exon | 25863166 | 25863231 | 25863166 | ID=MS.gene52599.t1.exon11;Parent=MS.gene52599.t1 |
| chr7.4 | CDS | 25863166 | 25863231 | 25863166 | ID=cds.MS.gene52599.t1;Parent=MS.gene52599.t1 |
| chr7.4 | exon | 25862979 | 25863065 | 25862979 | ID=MS.gene52599.t1.exon12;Parent=MS.gene52599.t1 |
| chr7.4 | CDS | 25862979 | 25863065 | 25862979 | ID=cds.MS.gene52599.t1;Parent=MS.gene52599.t1 |
| Gene Sequence |
| Protein sequence |
