Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015787.t1 | XP_024629644.1 | 96 | 329 | 13 | 0 | 1 | 329 | 7 | 335 | 2.30E-82 | 315.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015787.t1 | Q84WJ9 | 78.7 | 314 | 67 | 0 | 16 | 329 | 15 | 328 | 1.2e-55 | 218.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015787.t1 | G7L846 | 96.0 | 329 | 13 | 0 | 1 | 329 | 7 | 335 | 1.7e-82 | 315.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015787.t1 | MTR_8g102770 | 97.872 | 329 | 7 | 0 | 1 | 329 | 7 | 335 | 0.0 | 648 |
| MS.gene015787.t1 | MTR_2g086950 | 29.771 | 262 | 143 | 7 | 63 | 293 | 1 | 252 | 1.80e-14 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015787.t1 | AT5G19680 | 77.707 | 314 | 70 | 0 | 16 | 329 | 15 | 328 | 2.93e-179 | 499 |
| MS.gene015787.t1 | AT5G22320 | 29.268 | 246 | 142 | 6 | 71 | 286 | 2 | 245 | 7.80e-11 | 63.2 |
Find 70 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCTTCGATTGATTCTATT+TGG | 0.180392 | 4.3:+2489125 | None:intergenic |
| ATGTTCAATCTCCTCAATTT+TGG | 0.205248 | 4.3:+2491042 | None:intergenic |
| CGACGAATCATCAACCTTAT+TGG | 0.224346 | 4.3:-2491527 | MS.gene015787:CDS |
| CCGTCGTTCCTCTCTCTTCC+TGG | 0.241921 | 4.3:-2491339 | MS.gene015787:CDS |
| TCACAATGGTATCACTAAAA+TGG | 0.268063 | 4.3:-2489352 | MS.gene015787:CDS |
| GAGAGAGGAGAGGGTGTTCC+AGG | 0.304542 | 4.3:+2491321 | None:intergenic |
| GCAGACCCTGGTGAATTTGC+AGG | 0.321077 | 4.3:-2490865 | MS.gene015787:CDS |
| AACTCGGTTCCAACAAATTA+CGG | 0.328564 | 4.3:-2490997 | MS.gene015787:CDS |
| CGACGGCAGCGTCGGTGATT+AGG | 0.333569 | 4.3:+2491356 | None:intergenic |
| GAATCAATTTGTTGAATGTT+GGG | 0.345226 | 4.3:+2488574 | None:intergenic |
| AAGCATATTTAAGAAGCTTT+TGG | 0.349027 | 4.3:-2491161 | MS.gene015787:CDS |
| CCTTAGGATGGCAGTATAGT+TGG | 0.355765 | 4.3:+2488606 | None:intergenic |
| TTAACTAACCCGTAATTTGT+TGG | 0.363726 | 4.3:+2490988 | None:intergenic |
| AATCGTCTTACTTCGATGAT+AGG | 0.364815 | 4.3:-2490762 | MS.gene015787:CDS |
| AGGAATAAACATACTGTGTT+AGG | 0.379864 | 4.3:+2489250 | None:intergenic |
| TGGTGAATTTGCAGGAGTTA+TGG | 0.389196 | 4.3:-2490857 | MS.gene015787:CDS |
| AGAATCAATTTGTTGAATGT+TGG | 0.391281 | 4.3:+2488573 | None:intergenic |
| ATTGCAGATTAGAAGATTTG+TGG | 0.408097 | 4.3:-2489159 | MS.gene015787:intron |
| CTTCGTTACATGGTGTGGCT+AGG | 0.408654 | 4.3:-2491111 | MS.gene015787:CDS |
| TTCTTAAATATGCTTACATC+AGG | 0.411181 | 4.3:+2491169 | None:intergenic |
| AACTACAACGGCCACAGATC+TGG | 0.414641 | 4.3:-2491554 | MS.gene015787:CDS |
| AACGAAATTGCTTCGTTACA+TGG | 0.421794 | 4.3:-2491121 | MS.gene015787:CDS |
| TACTTCGATGATAGGATTTG+AGG | 0.426192 | 4.3:-2490754 | MS.gene015787:intron |
| TGTCATCTTTAGCCAATCTC+CGG | 0.426274 | 4.3:-2489323 | MS.gene015787:CDS |
| GTAACTGGTGAGATCCAATA+AGG | 0.442978 | 4.3:+2491513 | None:intergenic |
| TACATCTAAAACCCGGAGAT+TGG | 0.458207 | 4.3:+2489311 | None:intergenic |
| GAGATCGTGAAGCTGGTAAC+TGG | 0.459022 | 4.3:+2491498 | None:intergenic |
| TTCGTTACATGGTGTGGCTA+GGG | 0.464501 | 4.3:-2491110 | MS.gene015787:CDS |
| AGGTCTAACTCGGTGAGGTT+AGG | 0.467337 | 4.3:+2491457 | None:intergenic |
| CTTAGGATGGCAGTATAGTT+GGG | 0.467595 | 4.3:+2488607 | None:intergenic |
| ACTCGGTTCCAACAAATTAC+GGG | 0.472204 | 4.3:-2490996 | MS.gene015787:intron |
| GGATTTGCTGAGGCTGTCGC+TGG | 0.475973 | 4.3:-2489106 | MS.gene015787:CDS |
| CCAACTATACTGCCATCCTA+AGG | 0.497157 | 4.3:-2488606 | MS.gene015787:CDS |
| CTGAGTCGAGATCGTGAAGC+TGG | 0.502561 | 4.3:+2491491 | None:intergenic |
| TGTTGGGAAAGATTTCCCTT+AGG | 0.502654 | 4.3:+2488590 | None:intergenic |
| AATTTGCAGGAGTTATGGCT+TGG | 0.505707 | 4.3:-2490852 | MS.gene015787:CDS |
| ATTAAAGTTGTGAATCTATG+TGG | 0.507176 | 4.3:-2490819 | MS.gene015787:CDS |
| AAATGAAGTTACCAAAATTG+AGG | 0.544893 | 4.3:-2491053 | MS.gene015787:CDS |
| GTCGAGAGTGGATAAACGAT+TGG | 0.547251 | 4.3:+2491429 | None:intergenic |
| GGGAAAGATTTCCCTTAGGA+TGG | 0.548492 | 4.3:+2488594 | None:intergenic |
| CGGAGAGTTGGGCGATGCGA+GGG | 0.552820 | 4.3:+2491407 | None:intergenic |
| GTCATCTTTAGCCAATCTCC+GGG | 0.558464 | 4.3:-2489322 | MS.gene015787:CDS |
| AAGTACCTCGAGAGAGGAGA+GGG | 0.559541 | 4.3:+2491312 | None:intergenic |
| ATAACTCCTGCAAATTCACC+AGG | 0.560116 | 4.3:+2490859 | None:intergenic |
| TCTAACTCGGTGAGGTTAGG+AGG | 0.569923 | 4.3:+2491460 | None:intergenic |
| AATTGCTTCGTTACATGGTG+TGG | 0.573405 | 4.3:-2491116 | MS.gene015787:CDS |
| CAACTATACTGCCATCCTAA+GGG | 0.575726 | 4.3:-2488605 | MS.gene015787:CDS |
| GAGAGGAACGACGGCAGCGT+CGG | 0.580408 | 4.3:+2491348 | None:intergenic |
| AATGGTATCACTAAAATGGA+AGG | 0.580869 | 4.3:-2489348 | MS.gene015787:CDS |
| TCGGAGAGTTGGGCGATGCG+AGG | 0.590093 | 4.3:+2491406 | None:intergenic |
| TGGATAAACGATTGGCGGTG+AGG | 0.593257 | 4.3:+2491437 | None:intergenic |
| GGCGATGCGAGGGTCGAGAG+TGG | 0.600398 | 4.3:+2491417 | None:intergenic |
| GAGGGAAAGTACCTCGAGAG+AGG | 0.606087 | 4.3:+2491306 | None:intergenic |
| GAGAGTGGATAAACGATTGG+CGG | 0.606923 | 4.3:+2491432 | None:intergenic |
| ATCAAATAAGCTAACCTCTG+TGG | 0.608445 | 4.3:-2489286 | MS.gene015787:CDS |
| AAAGTACCTCGAGAGAGGAG+AGG | 0.625909 | 4.3:+2491311 | None:intergenic |
| CCAGGAAGAGAGAGGAACGA+CGG | 0.627554 | 4.3:+2491339 | None:intergenic |
| AACCAAATAGAATCAATCGA+AGG | 0.629752 | 4.3:-2489127 | MS.gene015787:CDS |
| GAACACCCTCTCCTCTCTCG+AGG | 0.637399 | 4.3:-2491317 | MS.gene015787:intron |
| GAACTATACTTGAGTCACAA+TGG | 0.639462 | 4.3:-2489366 | MS.gene015787:CDS |
| TTCGTCGTCGTCCAGATCTG+TGG | 0.643101 | 4.3:+2491543 | None:intergenic |
| ATCAATCGAAGGATTTGCTG+AGG | 0.655166 | 4.3:-2489116 | MS.gene015787:CDS |
| TTGATGATACATCTAAAACC+CGG | 0.659966 | 4.3:+2489304 | None:intergenic |
| ATTGGCGGTGAGGTCTAACT+CGG | 0.662369 | 4.3:+2491447 | None:intergenic |
| CGGTGAGGTCTAACTCGGTG+AGG | 0.663976 | 4.3:+2491452 | None:intergenic |
| GGAATCATCAACAACTACAA+CGG | 0.668984 | 4.3:-2491566 | MS.gene015787:CDS |
| AGGGTGTTCCAGGAAGAGAG+AGG | 0.678547 | 4.3:+2491331 | None:intergenic |
| GATGGAGAATTTGCAGACCC+TGG | 0.702701 | 4.3:-2490877 | MS.gene015787:CDS |
| GTTATGAATGTCATCCACAG+AGG | 0.718539 | 4.3:+2489272 | None:intergenic |
| TAACTCCTGCAAATTCACCA+GGG | 0.734852 | 4.3:+2490860 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTTTTTTT+AGG | - | chr4.3:2489223-2489242 | MS.gene015787:intron | 0.0% |
| !! | TTATTAAAGAAAAATAAAGA+GGG | - | chr4.3:2490001-2490020 | MS.gene015787:intron | 10.0% |
| !! | TTTATTAAAGAAAAATAAAG+AGG | - | chr4.3:2490000-2490019 | MS.gene015787:intron | 10.0% |
| !! | AAATTTAAACATGAACATAT+GGG | - | chr4.3:2489755-2489774 | MS.gene015787:intron | 15.0% |
| !! | ATTACATTTAAGAATTGAAT+AGG | - | chr4.3:2489418-2489437 | MS.gene015787:intron | 15.0% |
| !! | ATTATAAATACAATAGCAAA+AGG | + | chr4.3:2489192-2489211 | None:intergenic | 15.0% |
| !! | TAAATTTAAACATGAACATA+TGG | - | chr4.3:2489754-2489773 | MS.gene015787:intron | 15.0% |
| !! | TTAAATGTTGTATACTATAT+TGG | - | chr4.3:2491383-2491402 | MS.gene015787:CDS | 15.0% |
| !!! | AAAATGTTTATTTAGAATGA+GGG | + | chr4.3:2490908-2490927 | None:intergenic | 15.0% |
| !!! | AATACTTGATAATAATACTT+TGG | - | chr4.3:2490460-2490479 | MS.gene015787:intron | 15.0% |
| !!! | TAGCTATATAACTATTTTAA+AGG | + | chr4.3:2489504-2489523 | None:intergenic | 15.0% |
| !!! | TTTTTTTATTATTCAGGAAT+TGG | - | chr4.3:2488905-2488924 | MS.gene015787:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTAGGTGA+TGG | - | chr4.3:2489231-2489250 | MS.gene015787:intron | 15.0% |
| !! | AAACAAATTCAAATTACGAT+TGG | - | chr4.3:2489446-2489465 | MS.gene015787:intron | 20.0% |
| !! | AAATAGTAGTTATATATAGC+AGG | + | chr4.3:2489920-2489939 | None:intergenic | 20.0% |
| !! | AAATTATACTAGCGTATAAA+TGG | - | chr4.3:2489713-2489732 | MS.gene015787:intron | 20.0% |
| !! | ATGGAGAATTTCAAAATTAT+TGG | - | chr4.3:2489560-2489579 | MS.gene015787:intron | 20.0% |
| !! | GAGGAAAAAAAATGATTTAA+AGG | - | chr4.3:2490361-2490380 | MS.gene015787:intron | 20.0% |
| !! | TAAATAAAATCCATACACAA+AGG | + | chr4.3:2491085-2491104 | None:intergenic | 20.0% |
| !! | TTTATTGTATGAAAAGATAC+TGG | - | chr4.3:2489685-2489704 | MS.gene015787:intron | 20.0% |
| !! | TTTGAACTTATTGGTAAATA+GGG | - | chr4.3:2490651-2490670 | MS.gene015787:intron | 20.0% |
| !!! | ATTTATAGCTGATAACTTTT+TGG | - | chr4.3:2490712-2490731 | MS.gene015787:intron | 20.0% |
| !!! | ATTTTAAATGATCTTTCAAG+AGG | + | chr4.3:2490418-2490437 | None:intergenic | 20.0% |
| !!! | CATTCTAAATAAACATTTTC+CGG | - | chr4.3:2490909-2490928 | MS.gene015787:intron | 20.0% |
| !!! | GAAAATGTTTATTTAGAATG+AGG | + | chr4.3:2490909-2490928 | None:intergenic | 20.0% |
| ! | AAATGAAGTTACCAAAATTG+AGG | - | chr4.3:2489073-2489092 | MS.gene015787:CDS | 25.0% |
| ! | AATAAATCATCATTATGTCG+AGG | - | chr4.3:2490518-2490537 | MS.gene015787:intron | 25.0% |
| ! | ACAATGAAATTATCAACTCA+AGG | + | chr4.3:2490935-2490954 | None:intergenic | 25.0% |
| ! | ATGAACATATGGGAAAAATT+TGG | - | chr4.3:2489765-2489784 | MS.gene015787:intron | 25.0% |
| ! | ATTAAAGTTGTGAATCTATG+TGG | - | chr4.3:2489307-2489326 | MS.gene015787:CDS | 25.0% |
| ! | ATTTCAATTTCAACCTTGTA+AGG | - | chr4.3:2490136-2490155 | MS.gene015787:intron | 25.0% |
| ! | CACTTGTAAAATCATTTGTT+TGG | - | chr4.3:2489639-2489658 | MS.gene015787:intron | 25.0% |
| ! | CATTTAAGAATTGAATAGGT+AGG | - | chr4.3:2489422-2489441 | MS.gene015787:intron | 25.0% |
| ! | CTCTAATTTCAATTGATGAA+TGG | + | chr4.3:2490620-2490639 | None:intergenic | 25.0% |
| ! | GAAAAATAAAGAGGGAAAAA+AGG | - | chr4.3:2490009-2490028 | MS.gene015787:intron | 25.0% |
| ! | GAAATTCTCCATATAATACA+GGG | + | chr4.3:2489552-2489571 | None:intergenic | 25.0% |
| ! | GTTTGAACTTATTGGTAAAT+AGG | - | chr4.3:2490650-2490669 | MS.gene015787:intron | 25.0% |
| ! | TAGAAAATAACCTTTGTGTA+TGG | - | chr4.3:2491072-2491091 | MS.gene015787:CDS | 25.0% |
| ! | TATTGGAAATTGTGAATACA+GGG | - | chr4.3:2489577-2489596 | MS.gene015787:intron | 25.0% |
| ! | TATTTATCACTCACTCAAAT+TGG | + | chr4.3:2490444-2490463 | None:intergenic | 25.0% |
| ! | TCATATCAATCTCAACTATA+AGG | - | chr4.3:2489846-2489865 | MS.gene015787:intron | 25.0% |
| ! | TGAAATTCTCCATATAATAC+AGG | + | chr4.3:2489553-2489572 | None:intergenic | 25.0% |
| ! | TTATTGGAAATTGTGAATAC+AGG | - | chr4.3:2489576-2489595 | MS.gene015787:intron | 25.0% |
| ! | TTCTTAAATATGCTTACATC+AGG | + | chr4.3:2488960-2488979 | None:intergenic | 25.0% |
| ! | TTGTAAAATCATTTGTTTGG+AGG | - | chr4.3:2489642-2489661 | MS.gene015787:intron | 25.0% |
| !! | AAGCATATTTAAGAAGCTTT+TGG | - | chr4.3:2488965-2488984 | MS.gene015787:intron | 25.0% |
| !! | ATGATGATTTATTTCTTGCT+TGG | + | chr4.3:2490511-2490530 | None:intergenic | 25.0% |
| !! | TTATTTCTTGCTTGGATATT+TGG | + | chr4.3:2490503-2490522 | None:intergenic | 25.0% |
| !! | TTTATTTAGAATGAGGGAAA+TGG | + | chr4.3:2490902-2490921 | None:intergenic | 25.0% |
| !! | TTTTCATCATTTGCAGATTT+TGG | - | chr4.3:2489106-2489125 | MS.gene015787:CDS | 25.0% |
| !!! | AAATATGCAGTGAAAGTATT+AGG | - | chr4.3:2489953-2489972 | MS.gene015787:intron | 25.0% |
| !!! | AAATTACGATTGGCTTAATA+TGG | - | chr4.3:2489456-2489475 | MS.gene015787:intron | 25.0% |
| !!! | AGAATCAATTTGTTGAATGT+TGG | + | chr4.3:2491556-2491575 | None:intergenic | 25.0% |
| !!! | ATACACAAAGGTTATTTTCT+AGG | + | chr4.3:2491073-2491092 | None:intergenic | 25.0% |
| !!! | GAATCAATTTGTTGAATGTT+GGG | + | chr4.3:2491555-2491574 | None:intergenic | 25.0% |
| AAAATGATGAGATTTACCAG+AGG | + | chr4.3:2490575-2490594 | None:intergenic | 30.0% | |
| AAACAAACGACTCTAAGTTA+AGG | + | chr4.3:2491361-2491380 | None:intergenic | 30.0% | |
| AAATTGTGAATACAGGGAAT+AGG | - | chr4.3:2489583-2489602 | MS.gene015787:intron | 30.0% | |
| AACCAAATAGAATCAATCGA+AGG | - | chr4.3:2490999-2491018 | MS.gene015787:CDS | 30.0% | |
| AAGTTGAGGTATGAAATTGT+AGG | - | chr4.3:2489877-2489896 | MS.gene015787:intron | 30.0% | |
| AATGATTTAAAGGAACAGTC+TGG | - | chr4.3:2490371-2490390 | MS.gene015787:intron | 30.0% | |
| AATGGTATCACTAAAATGGA+AGG | - | chr4.3:2490778-2490797 | MS.gene015787:CDS | 30.0% | |
| AATTGTGAATACAGGGAATA+GGG | - | chr4.3:2489584-2489603 | MS.gene015787:intron | 30.0% | |
| AATTTCAACCTTGTAAGGTT+TGG | - | chr4.3:2490141-2490160 | MS.gene015787:intron | 30.0% | |
| AGAGGAATGTAAGTATTAAG+AGG | + | chr4.3:2490557-2490576 | None:intergenic | 30.0% | |
| AGGAATAAACATACTGTGTT+AGG | + | chr4.3:2490879-2490898 | None:intergenic | 30.0% | |
| AGTTGAGATTGATATGAACT+TGG | + | chr4.3:2489843-2489862 | None:intergenic | 30.0% | |
| ATAAAAAAGGACAATGCAGT+AGG | + | chr4.3:2490225-2490244 | None:intergenic | 30.0% | |
| ATGATAAGCAGAAAGATGAA+GGG | + | chr4.3:2491306-2491325 | None:intergenic | 30.0% | |
| ATGTGAATCCAAATTTATCG+TGG | - | chr4.3:2489814-2489833 | MS.gene015787:intron | 30.0% | |
| ATTGCAGATTAGAAGATTTG+TGG | - | chr4.3:2490967-2490986 | MS.gene015787:intron | 30.0% | |
| ATTTCAACCTTGTAAGGTTT+GGG | - | chr4.3:2490142-2490161 | MS.gene015787:intron | 30.0% | |
| CAACGCACATAGTATAAAAA+AGG | + | chr4.3:2490238-2490257 | None:intergenic | 30.0% | |
| GTTGAGATTGATATGAACTT+GGG | + | chr4.3:2489842-2489861 | None:intergenic | 30.0% | |
| TAAAAAAGGACAATGCAGTA+GGG | + | chr4.3:2490224-2490243 | None:intergenic | 30.0% | |
| TCACAATGGTATCACTAAAA+TGG | - | chr4.3:2490774-2490793 | MS.gene015787:CDS | 30.0% | |
| TCATCTTACCCTGTATTATA+TGG | - | chr4.3:2489541-2489560 | MS.gene015787:intron | 30.0% | |
| TCTTAATACTTACATTCCTC+TGG | - | chr4.3:2490556-2490575 | MS.gene015787:intron | 30.0% | |
| TGCTTTCAGTTTGAACTTAT+TGG | - | chr4.3:2490642-2490661 | MS.gene015787:intron | 30.0% | |
| TTAATAAATCCCCACATTGT+GGG | + | chr4.3:2489988-2490007 | None:intergenic | 30.0% | |
| TTATACTAGCGTATAAATGG+AGG | - | chr4.3:2489716-2489735 | MS.gene015787:intron | 30.0% | |
| TTGAGATTGATATGAACTTG+GGG | + | chr4.3:2489841-2489860 | None:intergenic | 30.0% | |
| TTTAATAAATCCCCACATTG+TGG | + | chr4.3:2489989-2490008 | None:intergenic | 30.0% | |
| ! | ATCCTTCGATTGATTCTATT+TGG | + | chr4.3:2491004-2491023 | None:intergenic | 30.0% |
| ! | ATGTTCAATCTCCTCAATTT+TGG | + | chr4.3:2489087-2489106 | None:intergenic | 30.0% |
| ! | TTAACTAACCCGTAATTTGT+TGG | + | chr4.3:2489141-2489160 | None:intergenic | 30.0% |
| ! | TTCACTGCATATTTTCAAAC+TGG | + | chr4.3:2489947-2489966 | None:intergenic | 30.0% |
| ! | TTGATGATACATCTAAAACC+CGG | + | chr4.3:2490825-2490844 | None:intergenic | 30.0% |
| !! | ATTGATGAATGGCTATTTTC+TGG | + | chr4.3:2490609-2490628 | None:intergenic | 30.0% |
| !! | GTTATTTTCTAGGTAGATTG+TGG | + | chr4.3:2491063-2491082 | None:intergenic | 30.0% |
| !! | TGATAACTTTTTGGCATACA+GGG | - | chr4.3:2490721-2490740 | MS.gene015787:intron | 30.0% |
| !! | TTACGGGTTAGTTAATGTTA+TGG | - | chr4.3:2489146-2489165 | MS.gene015787:CDS | 30.0% |
| AACGAAATTGCTTCGTTACA+TGG | - | chr4.3:2489005-2489024 | MS.gene015787:intron | 35.0% | |
| AACTCGGTTCCAACAAATTA+CGG | - | chr4.3:2489129-2489148 | MS.gene015787:CDS | 35.0% | |
| AACTTATTGGTAAATAGGGC+TGG | - | chr4.3:2490655-2490674 | MS.gene015787:intron | 35.0% | |
| AATCGTCTTACTTCGATGAT+AGG | - | chr4.3:2489364-2489383 | MS.gene015787:CDS | 35.0% | |
| ACTATCAGTTGATCTAGTTG+GGG | - | chr4.3:2491177-2491196 | MS.gene015787:CDS | 35.0% | |
| ACTTATTGGTAAATAGGGCT+GGG | - | chr4.3:2490656-2490675 | MS.gene015787:intron | 35.0% | |
| ATCAAATAAGCTAACCTCTG+TGG | - | chr4.3:2490840-2490859 | MS.gene015787:CDS | 35.0% | |
| CACTATCAGTTGATCTAGTT+GGG | - | chr4.3:2491176-2491195 | MS.gene015787:CDS | 35.0% | |
| CAGAGAAATACTTTCTCTGA+AGG | - | chr4.3:2490165-2490184 | MS.gene015787:intron | 35.0% | |
| CATGATAAGCAGAAAGATGA+AGG | + | chr4.3:2491307-2491326 | None:intergenic | 35.0% | |
| CTGATGAAAATTGCACGAAA+AGG | + | chr4.3:2491109-2491128 | None:intergenic | 35.0% | |
| CTTTCTGCTTATCATGAATG+TGG | - | chr4.3:2491311-2491330 | MS.gene015787:intron | 35.0% | |
| GAAAAAAGGAAATGCTGATG+TGG | - | chr4.3:2490023-2490042 | MS.gene015787:intron | 35.0% | |
| GAACTATACTTGAGTCACAA+TGG | - | chr4.3:2490760-2490779 | MS.gene015787:CDS | 35.0% | |
| GATCTTTCAAGAGGTAGAAT+TGG | + | chr4.3:2490409-2490428 | None:intergenic | 35.0% | |
| GGAATCATCAACAACTACAA+CGG | - | chr4.3:2488560-2488579 | MS.gene015787:CDS | 35.0% | |
| GGATTCACATTAATTAGCAC+TGG | + | chr4.3:2489804-2489823 | None:intergenic | 35.0% | |
| TACTTCGATGATAGGATTTG+AGG | - | chr4.3:2489372-2489391 | MS.gene015787:CDS | 35.0% | |
| TCAATCTCAACTATAAGGAC+TGG | - | chr4.3:2489851-2489870 | MS.gene015787:intron | 35.0% | |
| TGAAATTATCAACTCAAGGC+CGG | + | chr4.3:2490931-2490950 | None:intergenic | 35.0% | |
| TTAGGGGAGTCAGTTATATA+GGG | - | chr4.3:2490077-2490096 | MS.gene015787:intron | 35.0% | |
| ! | ACTGCATATTTTCAAACTGG+TGG | + | chr4.3:2489944-2489963 | None:intergenic | 35.0% |
| ! | ATAAGGACTGGTAAAAGTTG+AGG | - | chr4.3:2489863-2489882 | MS.gene015787:intron | 35.0% |
| ! | ATTTAGAATGAGGGAAATGG+AGG | + | chr4.3:2490899-2490918 | None:intergenic | 35.0% |
| ! | TGGTTTTTCTCAATGCAAAG+CGG | - | chr4.3:2491331-2491350 | MS.gene015787:CDS | 35.0% |
| !! | ATGGCTATTTTCTGGAAATG+TGG | + | chr4.3:2490601-2490620 | None:intergenic | 35.0% |
| !! | CTGATAACTTTTTGGCATAC+AGG | - | chr4.3:2490720-2490739 | MS.gene015787:intron | 35.0% |
| !! | TACGATTGGCTTAATATGGA+GGG | - | chr4.3:2489460-2489479 | MS.gene015787:intron | 35.0% |
| !! | TGGCTATTTTCTGGAAATGT+GGG | + | chr4.3:2490600-2490619 | None:intergenic | 35.0% |
| !! | TTACGATTGGCTTAATATGG+AGG | - | chr4.3:2489459-2489478 | MS.gene015787:intron | 35.0% |
| !!! | CATTTGCAGATTTTGGAACT+CGG | - | chr4.3:2489113-2489132 | MS.gene015787:CDS | 35.0% |
| !!! | GAGAGAGAGTTTTTTGAGAT+CGG | + | chr4.3:2488742-2488761 | None:intergenic | 35.0% |
| !!! | TTTTTTGAGATCGGAGAGTT+GGG | + | chr4.3:2488733-2488752 | None:intergenic | 35.0% |
| AATTGCTTCGTTACATGGTG+TGG | - | chr4.3:2489010-2489029 | MS.gene015787:intron | 40.0% | |
| AATTTGCAGGAGTTATGGCT+TGG | - | chr4.3:2489274-2489293 | MS.gene015787:CDS | 40.0% | |
| ACTCGGTTCCAACAAATTAC+GGG | - | chr4.3:2489130-2489149 | MS.gene015787:CDS | 40.0% | |
| AGAACCTAGGAGAAGAAAGA+GGG | + | chr4.3:2488841-2488860 | None:intergenic | 40.0% | |
| AGAGAGTCATCATTCTGACA+AGG | - | chr4.3:2490306-2490325 | MS.gene015787:intron | 40.0% | |
| AGATGCAATTCATGAGCAAG+AGG | - | chr4.3:2490342-2490361 | MS.gene015787:intron | 40.0% | |
| ATAACTCCTGCAAATTCACC+AGG | + | chr4.3:2489270-2489289 | None:intergenic | 40.0% | |
| CAACTATACTGCCATCCTAA+GGG | - | chr4.3:2491521-2491540 | MS.gene015787:CDS | 40.0% | |
| CCAACTAGATCAACTGATAG+TGG | + | chr4.3:2491178-2491197 | None:intergenic | 40.0% | |
| CCACTATCAGTTGATCTAGT+TGG | - | chr4.3:2491175-2491194 | MS.gene015787:CDS | 40.0% | |
| CGACGAATCATCAACCTTAT+TGG | - | chr4.3:2488599-2488618 | MS.gene015787:CDS | 40.0% | |
| CTTAGGATGGCAGTATAGTT+GGG | + | chr4.3:2491522-2491541 | None:intergenic | 40.0% | |
| CTTAGGGGAGTCAGTTATAT+AGG | - | chr4.3:2490076-2490095 | MS.gene015787:intron | 40.0% | |
| CTTATTGGTAAATAGGGCTG+GGG | - | chr4.3:2490657-2490676 | MS.gene015787:intron | 40.0% | |
| CTTTGCTCTATGGGTAGTTA+GGG | - | chr4.3:2490190-2490209 | MS.gene015787:intron | 40.0% | |
| GCAAGATTATGCACACTTCA+TGG | + | chr4.3:2491212-2491231 | None:intergenic | 40.0% | |
| GTAACTGGTGAGATCCAATA+AGG | + | chr4.3:2488616-2488635 | None:intergenic | 40.0% | |
| GTTATGAATGTCATCCACAG+AGG | + | chr4.3:2490857-2490876 | None:intergenic | 40.0% | |
| TAACTCCTGCAAATTCACCA+GGG | + | chr4.3:2489269-2489288 | None:intergenic | 40.0% | |
| TGCGTGTGTTATCCAACTTA+GGG | - | chr4.3:2490060-2490079 | MS.gene015787:intron | 40.0% | |
| TGGTGAATTTGCAGGAGTTA+TGG | - | chr4.3:2489269-2489288 | MS.gene015787:CDS | 40.0% | |
| TGTCATCTTTAGCCAATCTC+CGG | - | chr4.3:2490803-2490822 | MS.gene015787:CDS | 40.0% | |
| TGTTGGGAAAGATTTCCCTT+AGG | + | chr4.3:2491539-2491558 | None:intergenic | 40.0% | |
| TTATTGGTAAATAGGGCTGG+GGG | - | chr4.3:2490658-2490677 | MS.gene015787:intron | 40.0% | |
| TTTGCTCTATGGGTAGTTAG+GGG | - | chr4.3:2490191-2490210 | MS.gene015787:intron | 40.0% | |
| ! | TACATCTAAAACCCGGAGAT+TGG | + | chr4.3:2490818-2490837 | None:intergenic | 40.0% |
| ! | TATAACTGACTCCCCTAAGT+TGG | + | chr4.3:2490075-2490094 | None:intergenic | 40.0% |
| !! | ATCAATCGAAGGATTTGCTG+AGG | - | chr4.3:2491010-2491029 | MS.gene015787:CDS | 40.0% |
| !!! | GTTTTTTGAGATCGGAGAGT+TGG | + | chr4.3:2488734-2488753 | None:intergenic | 40.0% |
| AAATCCCCACATTGTGGGTT+TGG | + | chr4.3:2489983-2490002 | None:intergenic | 45.0% | |
| AACGCATCGAAACAGAACCT+AGG | + | chr4.3:2488854-2488873 | None:intergenic | 45.0% | |
| ATCCAGACTTTCTTTCCTGC+AGG | - | chr4.3:2491488-2491507 | MS.gene015787:CDS | 45.0% | |
| CAGAACCTAGGAGAAGAAAG+AGG | + | chr4.3:2488842-2488861 | None:intergenic | 45.0% | |
| CCAACTATACTGCCATCCTA+AGG | - | chr4.3:2491520-2491539 | MS.gene015787:CDS | 45.0% | |
| CCTTAGGATGGCAGTATAGT+TGG | + | chr4.3:2491523-2491542 | None:intergenic | 45.0% | |
| CTCCATTATCACTACCTACG+AGG | - | chr4.3:2491259-2491278 | MS.gene015787:intron | 45.0% | |
| CTGAAGGAGCTTTGCTCTAT+GGG | - | chr4.3:2490181-2490200 | MS.gene015787:intron | 45.0% | |
| CTGCGTGTGTTATCCAACTT+AGG | - | chr4.3:2490059-2490078 | MS.gene015787:intron | 45.0% | |
| CTTGGGGACCACGATAAATT+TGG | + | chr4.3:2489825-2489844 | None:intergenic | 45.0% | |
| CTTTCCCTCTTTCTTCTCCT+AGG | - | chr4.3:2488834-2488853 | MS.gene015787:intron | 45.0% | |
| GACCTCGTAGGTAGTGATAA+TGG | + | chr4.3:2491264-2491283 | None:intergenic | 45.0% | |
| GAGAGTGGATAAACGATTGG+CGG | + | chr4.3:2488697-2488716 | None:intergenic | 45.0% | |
| GCGTGTGTTATCCAACTTAG+GGG | - | chr4.3:2490061-2490080 | MS.gene015787:intron | 45.0% | |
| GCTTTGCTCTATGGGTAGTT+AGG | - | chr4.3:2490189-2490208 | MS.gene015787:intron | 45.0% | |
| GGGAAAGATTTCCCTTAGGA+TGG | + | chr4.3:2491535-2491554 | None:intergenic | 45.0% | |
| GTCATCTTTAGCCAATCTCC+GGG | - | chr4.3:2490804-2490823 | MS.gene015787:CDS | 45.0% | |
| GTCGAGAGTGGATAAACGAT+TGG | + | chr4.3:2488700-2488719 | None:intergenic | 45.0% | |
| GTCTGAATAGAGAGCGAGAA+GGG | - | chr4.3:2490099-2490118 | MS.gene015787:intron | 45.0% | |
| TCTGAAGGAGCTTTGCTCTA+TGG | - | chr4.3:2490180-2490199 | MS.gene015787:intron | 45.0% | |
| TCTGAATAGAGAGCGAGAAG+GGG | - | chr4.3:2490100-2490119 | MS.gene015787:intron | 45.0% | |
| TTCGTTACATGGTGTGGCTA+GGG | - | chr4.3:2489016-2489035 | MS.gene015787:intron | 45.0% | |
| TTCTCTGCCCAAACCTTACA+AGG | + | chr4.3:2490152-2490171 | None:intergenic | 45.0% | |
| !! | CGTCGGTGATTAGGTTTTGA+CGG | + | chr4.3:2488764-2488783 | None:intergenic | 45.0% |
| !! | TAATTAGCACTGGCAGTGCT+TGG | + | chr4.3:2489794-2489813 | None:intergenic | 45.0% |
| !!! | TTTTTTTTTTTTTATTATTC+AGG | - | chr4.3:2488899-2488918 | MS.gene015787:intron | 5.0% |
| AACTACAACGGCCACAGATC+TGG | - | chr4.3:2488572-2488591 | MS.gene015787:CDS | 50.0% | |
| AAGTACCTCGAGAGAGGAGA+GGG | + | chr4.3:2488817-2488836 | None:intergenic | 50.0% | |
| ACCACCAAACCCACAATGTG+GGG | - | chr4.3:2489976-2489995 | MS.gene015787:intron | 50.0% | |
| AGCCTGCAGGAAAGAAAGTC+TGG | + | chr4.3:2491493-2491512 | None:intergenic | 50.0% | |
| ATCACTACCTACGAGGTCGA+TGG | - | chr4.3:2491266-2491285 | MS.gene015787:intron | 50.0% | |
| ATTGGCGGTGAGGTCTAACT+CGG | + | chr4.3:2488682-2488701 | None:intergenic | 50.0% | |
| CTGAATAGAGAGCGAGAAGG+GGG | - | chr4.3:2490101-2490120 | MS.gene015787:intron | 50.0% | |
| CTTCGTTACATGGTGTGGCT+AGG | - | chr4.3:2489015-2489034 | MS.gene015787:intron | 50.0% | |
| GACCACCAAACCCACAATGT+GGG | - | chr4.3:2489975-2489994 | MS.gene015787:intron | 50.0% | |
| GAGATCGTGAAGCTGGTAAC+TGG | + | chr4.3:2488631-2488650 | None:intergenic | 50.0% | |
| GATGGAGAATTTGCAGACCC+TGG | - | chr4.3:2489249-2489268 | MS.gene015787:intron | 50.0% | |
| GGAAATGCTGATGTGGCACA+TGG | - | chr4.3:2490030-2490049 | MS.gene015787:intron | 50.0% | |
| GGTCTGAATAGAGAGCGAGA+AGG | - | chr4.3:2490098-2490117 | MS.gene015787:intron | 50.0% | |
| TATGTGCGTTGTTGTGACGC+TGG | - | chr4.3:2490247-2490266 | MS.gene015787:intron | 50.0% | |
| TGGATAAACGATTGGCGGTG+AGG | + | chr4.3:2488692-2488711 | None:intergenic | 50.0% | |
| ! | AAAGTACCTCGAGAGAGGAG+AGG | + | chr4.3:2488818-2488837 | None:intergenic | 50.0% |
| ! | AGGTCTAACTCGGTGAGGTT+AGG | + | chr4.3:2488672-2488691 | None:intergenic | 50.0% |
| ! | TCTAACTCGGTGAGGTTAGG+AGG | + | chr4.3:2488669-2488688 | None:intergenic | 50.0% |
| AGCGAGAAGGGGGATCATTG+CGG | - | chr4.3:2490111-2490130 | MS.gene015787:intron | 55.0% | |
| AGTTGGGTGACTTAGCCTGC+AGG | + | chr4.3:2491506-2491525 | None:intergenic | 55.0% | |
| CAGTTTGCCATCGACCTCGT+AGG | + | chr4.3:2491276-2491295 | None:intergenic | 55.0% | |
| CCAGGAAGAGAGAGGAACGA+CGG | + | chr4.3:2488790-2488809 | None:intergenic | 55.0% | |
| CTGAGTCGAGATCGTGAAGC+TGG | + | chr4.3:2488638-2488657 | None:intergenic | 55.0% | |
| GCAGACCCTGGTGAATTTGC+AGG | - | chr4.3:2489261-2489280 | MS.gene015787:intron | 55.0% | |
| GGACCACCAAACCCACAATG+TGG | - | chr4.3:2489974-2489993 | MS.gene015787:intron | 55.0% | |
| TCCCCACATTGTGGGTTTGG+TGG | + | chr4.3:2489980-2489999 | None:intergenic | 55.0% | |
| TGCTGATGTGGCACATGGCA+AGG | - | chr4.3:2490035-2490054 | MS.gene015787:intron | 55.0% | |
| TTCGTCGTCGTCCAGATCTG+TGG | + | chr4.3:2488586-2488605 | None:intergenic | 55.0% | |
| ! | AGGGTGTTCCAGGAAGAGAG+AGG | + | chr4.3:2488798-2488817 | None:intergenic | 55.0% |
| !! | GAGGGAAAGTACCTCGAGAG+AGG | + | chr4.3:2488823-2488842 | None:intergenic | 55.0% |
| CCGTCGTTCCTCTCTCTTCC+TGG | - | chr4.3:2488787-2488806 | MS.gene015787:intron | 60.0% | |
| GAACACCCTCTCCTCTCTCG+AGG | - | chr4.3:2488809-2488828 | MS.gene015787:intron | 60.0% | |
| ! | CGGTGAGGTCTAACTCGGTG+AGG | + | chr4.3:2488677-2488696 | None:intergenic | 60.0% |
| !! | GAGAGAGGAGAGGGTGTTCC+AGG | + | chr4.3:2488808-2488827 | None:intergenic | 60.0% |
| !! | GGATTTGCTGAGGCTGTCGC+TGG | - | chr4.3:2491020-2491039 | MS.gene015787:CDS | 60.0% |
| CGGAGAGTTGGGCGATGCGA+GGG | + | chr4.3:2488722-2488741 | None:intergenic | 65.0% | |
| GAGAGGAACGACGGCAGCGT+CGG | + | chr4.3:2488781-2488800 | None:intergenic | 65.0% | |
| TCGGAGAGTTGGGCGATGCG+AGG | + | chr4.3:2488723-2488742 | None:intergenic | 65.0% | |
| !! | CGACGGCAGCGTCGGTGATT+AGG | + | chr4.3:2488773-2488792 | None:intergenic | 65.0% |
| GGCGATGCGAGGGTCGAGAG+TGG | + | chr4.3:2488712-2488731 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 2488558 | 2491590 | 2488558 | ID=MS.gene015787 |
| chr4.3 | mRNA | 2488558 | 2491590 | 2488558 | ID=MS.gene015787.t1;Parent=MS.gene015787 |
| chr4.3 | exon | 2491318 | 2491590 | 2491318 | ID=MS.gene015787.t1.exon1;Parent=MS.gene015787.t1 |
| chr4.3 | CDS | 2491318 | 2491590 | 2491318 | ID=cds.MS.gene015787.t1;Parent=MS.gene015787.t1 |
| chr4.3 | exon | 2490997 | 2491227 | 2490997 | ID=MS.gene015787.t1.exon2;Parent=MS.gene015787.t1 |
| chr4.3 | CDS | 2490997 | 2491227 | 2490997 | ID=cds.MS.gene015787.t1;Parent=MS.gene015787.t1 |
| chr4.3 | exon | 2490755 | 2490901 | 2490755 | ID=MS.gene015787.t1.exon3;Parent=MS.gene015787.t1 |
| chr4.3 | CDS | 2490755 | 2490901 | 2490755 | ID=cds.MS.gene015787.t1;Parent=MS.gene015787.t1 |
| chr4.3 | exon | 2489264 | 2489406 | 2489264 | ID=MS.gene015787.t1.exon4;Parent=MS.gene015787.t1 |
| chr4.3 | CDS | 2489264 | 2489406 | 2489264 | ID=cds.MS.gene015787.t1;Parent=MS.gene015787.t1 |
| chr4.3 | exon | 2489060 | 2489174 | 2489060 | ID=MS.gene015787.t1.exon5;Parent=MS.gene015787.t1 |
| chr4.3 | CDS | 2489060 | 2489174 | 2489060 | ID=cds.MS.gene015787.t1;Parent=MS.gene015787.t1 |
| chr4.3 | exon | 2488558 | 2488638 | 2488558 | ID=MS.gene015787.t1.exon6;Parent=MS.gene015787.t1 |
| chr4.3 | CDS | 2488558 | 2488638 | 2488558 | ID=cds.MS.gene015787.t1;Parent=MS.gene015787.t1 |
| Gene Sequence |
| Protein sequence |
