Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049084.t1 | XP_024629644.1 | 98.4 | 310 | 5 | 0 | 21 | 330 | 26 | 335 | 5.90E-78 | 301.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049084.t1 | Q84WJ9 | 79.4 | 310 | 64 | 0 | 21 | 330 | 19 | 328 | 4.6e-55 | 216.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049084.t1 | G7L846 | 98.4 | 310 | 5 | 0 | 21 | 330 | 26 | 335 | 4.2e-78 | 301.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049084.t1 | MTR_8g102770 | 97.576 | 330 | 7 | 1 | 1 | 330 | 7 | 335 | 0.0 | 644 |
| MS.gene049084.t1 | MTR_2g086950 | 29.771 | 262 | 143 | 7 | 64 | 294 | 1 | 252 | 1.99e-14 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049084.t1 | AT5G19680 | 77.707 | 314 | 70 | 0 | 17 | 330 | 15 | 328 | 2.08e-179 | 499 |
| MS.gene049084.t1 | AT5G22320 | 29.268 | 246 | 142 | 6 | 72 | 287 | 2 | 245 | 7.32e-11 | 63.5 |
Find 69 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCTTCGATTGATTCTATT+TGG | 0.180392 | 4.1:+3076604 | None:intergenic |
| ATGTTCAATCTCCTCAATTT+TGG | 0.205248 | 4.1:+3078522 | None:intergenic |
| CGACGAATCATCAACCTTAT+TGG | 0.224346 | 4.1:-3079004 | MS.gene049084:CDS |
| CCGTCGTTCCTCTCTCTTCC+TGG | 0.241921 | 4.1:-3078816 | MS.gene049084:CDS |
| TCACAATGGTATCACTAAAA+TGG | 0.268063 | 4.1:-3076831 | MS.gene049084:CDS |
| GAGAGAGGAGAGGGTGTTCC+AGG | 0.304542 | 4.1:+3078798 | None:intergenic |
| GCAGACCCTGGTGAATTTGC+AGG | 0.321077 | 4.1:-3078344 | MS.gene049084:CDS |
| AACTCGGTTCCAACAAATTA+CGG | 0.328564 | 4.1:-3078477 | MS.gene049084:CDS |
| CGACGGCAGCGTCGGTGATT+AGG | 0.333569 | 4.1:+3078833 | None:intergenic |
| GAATCAATTTGTTGAATGTT+GGG | 0.345226 | 4.1:+3076048 | None:intergenic |
| AAGCATATTTAAGAAGCTTT+TGG | 0.349027 | 4.1:-3078641 | MS.gene049084:CDS |
| CCTTAGGATGGCAGTATAGT+TGG | 0.355765 | 4.1:+3076080 | None:intergenic |
| TTAACTAACCCGTAATTTGT+TGG | 0.363726 | 4.1:+3078468 | None:intergenic |
| AATCGTCTTACTTCGATGAT+AGG | 0.364815 | 4.1:-3078241 | MS.gene049084:CDS |
| AGGAATAAACATACTGTGTT+AGG | 0.379864 | 4.1:+3076729 | None:intergenic |
| TGGTGAATTTGCAGGAGTTA+TGG | 0.389196 | 4.1:-3078336 | MS.gene049084:CDS |
| AGAATCAATTTGTTGAATGT+TGG | 0.391281 | 4.1:+3076047 | None:intergenic |
| AACTACAACGGCTACAGATC+TGG | 0.393082 | 4.1:-3079031 | MS.gene049084:CDS |
| ATTGCAGATTAGAAGATTTG+TGG | 0.408097 | 4.1:-3076638 | MS.gene049084:intron |
| CTTCGTTACATGGTGTGGCT+AGG | 0.408654 | 4.1:-3078591 | MS.gene049084:CDS |
| TTCTTAAATATGCTTACATC+AGG | 0.411181 | 4.1:+3078649 | None:intergenic |
| AACGAAATTGCTTCGTTACA+TGG | 0.421794 | 4.1:-3078601 | MS.gene049084:CDS |
| TACTTCGATGATAGGATTTG+AGG | 0.426192 | 4.1:-3078233 | MS.gene049084:intron |
| TGTCATCTTTAGCCAATCTC+CGG | 0.426274 | 4.1:-3076802 | MS.gene049084:CDS |
| GTAACTGGTGAGATCCAATA+AGG | 0.442978 | 4.1:+3078990 | None:intergenic |
| TACATCTAAAACCCGGAGAT+TGG | 0.458207 | 4.1:+3076790 | None:intergenic |
| GAGATCGTGAAGCTGGTAAC+TGG | 0.459022 | 4.1:+3078975 | None:intergenic |
| TTCGTTACATGGTGTGGCTA+GGG | 0.464501 | 4.1:-3078590 | MS.gene049084:CDS |
| AGGTCTAACTCGGTGAGGTT+AGG | 0.467337 | 4.1:+3078934 | None:intergenic |
| CTTAGGATGGCAGTATAGTT+GGG | 0.467595 | 4.1:+3076081 | None:intergenic |
| ACTCGGTTCCAACAAATTAC+GGG | 0.472204 | 4.1:-3078476 | MS.gene049084:intron |
| GGATTTGCTGAGGCTGTCGC+TGG | 0.475973 | 4.1:-3076585 | MS.gene049084:CDS |
| CCAACTATACTGCCATCCTA+AGG | 0.497157 | 4.1:-3076080 | MS.gene049084:CDS |
| CTGAGTCGAGATCGTGAAGC+TGG | 0.502561 | 4.1:+3078968 | None:intergenic |
| TGTTGGGAAAGATTTCCCTT+AGG | 0.502654 | 4.1:+3076064 | None:intergenic |
| AATTTGCAGGAGTTATGGCT+TGG | 0.505707 | 4.1:-3078331 | MS.gene049084:CDS |
| ATTAAAGTTGTGAATCTATG+TGG | 0.507176 | 4.1:-3078298 | MS.gene049084:CDS |
| AAATGAAGTTACCAAAATTG+AGG | 0.544893 | 4.1:-3078533 | MS.gene049084:CDS |
| GTCGAGAGTGGATAAACGAT+TGG | 0.547251 | 4.1:+3078906 | None:intergenic |
| GGGAAAGATTTCCCTTAGGA+TGG | 0.548492 | 4.1:+3076068 | None:intergenic |
| CGGAGAGTTGGGCGATGCGA+GGG | 0.552820 | 4.1:+3078884 | None:intergenic |
| GTCATCTTTAGCCAATCTCC+GGG | 0.558464 | 4.1:-3076801 | MS.gene049084:CDS |
| AAGTACCTCGAGAGAGGAGA+GGG | 0.559541 | 4.1:+3078789 | None:intergenic |
| ATAACTCCTGCAAATTCACC+AGG | 0.560116 | 4.1:+3078338 | None:intergenic |
| TCTAACTCGGTGAGGTTAGG+AGG | 0.569923 | 4.1:+3078937 | None:intergenic |
| AATTGCTTCGTTACATGGTG+TGG | 0.573405 | 4.1:-3078596 | MS.gene049084:CDS |
| CAACTATACTGCCATCCTAA+GGG | 0.575726 | 4.1:-3076079 | MS.gene049084:CDS |
| GAGAGGAACGACGGCAGCGT+CGG | 0.580408 | 4.1:+3078825 | None:intergenic |
| AATGGTATCACTAAAATGGA+AGG | 0.580869 | 4.1:-3076827 | MS.gene049084:CDS |
| TCGGAGAGTTGGGCGATGCG+AGG | 0.590093 | 4.1:+3078883 | None:intergenic |
| TGGATAAACGATTGGCGGTG+AGG | 0.593257 | 4.1:+3078914 | None:intergenic |
| GGCGATGCGAGGGTCGAGAG+TGG | 0.600398 | 4.1:+3078894 | None:intergenic |
| GAGGGAAAGTACCTCGAGAG+AGG | 0.606087 | 4.1:+3078783 | None:intergenic |
| GAGAGTGGATAAACGATTGG+CGG | 0.606923 | 4.1:+3078909 | None:intergenic |
| ATCAAATAAGCTAACCTCTG+TGG | 0.608445 | 4.1:-3076765 | MS.gene049084:CDS |
| AAAGTACCTCGAGAGAGGAG+AGG | 0.625909 | 4.1:+3078788 | None:intergenic |
| CCAGGAAGAGAGAGGAACGA+CGG | 0.627554 | 4.1:+3078816 | None:intergenic |
| AACCAAATAGAATCAATCGA+AGG | 0.629752 | 4.1:-3076606 | MS.gene049084:CDS |
| GAACACCCTCTCCTCTCTCG+AGG | 0.637399 | 4.1:-3078794 | MS.gene049084:intron |
| GAACTATACTTGAGTCACAA+TGG | 0.639462 | 4.1:-3076845 | MS.gene049084:CDS |
| ATCAATCGAAGGATTTGCTG+AGG | 0.655166 | 4.1:-3076595 | MS.gene049084:CDS |
| ATCATCAACAACAACTACAA+CGG | 0.655788 | 4.1:-3079043 | MS.gene049084:CDS |
| TTGATGATACATCTAAAACC+CGG | 0.659966 | 4.1:+3076783 | None:intergenic |
| ATTGGCGGTGAGGTCTAACT+CGG | 0.662369 | 4.1:+3078924 | None:intergenic |
| CGGTGAGGTCTAACTCGGTG+AGG | 0.663976 | 4.1:+3078929 | None:intergenic |
| AGGGTGTTCCAGGAAGAGAG+AGG | 0.678547 | 4.1:+3078808 | None:intergenic |
| GATGGAGAATTTGCAGACCC+TGG | 0.702701 | 4.1:-3078356 | MS.gene049084:CDS |
| GTTATGAATGTCATCCACAG+AGG | 0.718539 | 4.1:+3076751 | None:intergenic |
| TAACTCCTGCAAATTCACCA+GGG | 0.734852 | 4.1:+3078339 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTTTTTTT+AGG | - | chr4.1:3076697-3076716 | MS.gene049084:intron | 0.0% |
| !! | TTATTAAAGAAAAATAAAGA+GGG | - | chr4.1:3077476-3077495 | MS.gene049084:intron | 10.0% |
| !! | TTTATTAAAGAAAAATAAAG+AGG | - | chr4.1:3077475-3077494 | MS.gene049084:intron | 10.0% |
| !! | AAATTTAAACATGAACATAT+GGG | - | chr4.1:3077230-3077249 | MS.gene049084:intron | 15.0% |
| !! | ATTACATTTAAGAATTGAAT+AGG | - | chr4.1:3076893-3076912 | MS.gene049084:intron | 15.0% |
| !! | ATTATAAATACAATAGCAAA+AGG | + | chr4.1:3076666-3076685 | None:intergenic | 15.0% |
| !! | TAAATTTAAACATGAACATA+TGG | - | chr4.1:3077229-3077248 | MS.gene049084:intron | 15.0% |
| !! | TTAAATGTTGTATACTATAT+TGG | - | chr4.1:3078863-3078882 | MS.gene049084:CDS | 15.0% |
| !!! | AAAATGTTTATTTAGAATGA+GGG | + | chr4.1:3078383-3078402 | None:intergenic | 15.0% |
| !!! | AATACTTGATAATAATACTT+TGG | - | chr4.1:3077935-3077954 | MS.gene049084:intron | 15.0% |
| !!! | TAGCTATATAACTATTTTAA+AGG | + | chr4.1:3076979-3076998 | None:intergenic | 15.0% |
| !!! | TTTTTTTATTATTCAGGAAT+TGG | - | chr4.1:3076379-3076398 | MS.gene049084:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTAGGTGA+TGG | - | chr4.1:3076706-3076725 | MS.gene049084:intron | 15.0% |
| !! | AAACAAATTCAAATTACGAT+TGG | - | chr4.1:3076921-3076940 | MS.gene049084:intron | 20.0% |
| !! | AAATAGTAGTTATATATAGC+AGG | + | chr4.1:3077395-3077414 | None:intergenic | 20.0% |
| !! | AAATTATACTAGCGTATAAA+TGG | - | chr4.1:3077188-3077207 | MS.gene049084:intron | 20.0% |
| !! | ATGGAGAATTTCAAAATTAT+TGG | - | chr4.1:3077035-3077054 | MS.gene049084:intron | 20.0% |
| !! | GAGGAAAAAAAATGATTTAA+AGG | - | chr4.1:3077836-3077855 | MS.gene049084:intron | 20.0% |
| !! | TAAATAAAATCCATACACAA+AGG | + | chr4.1:3078560-3078579 | None:intergenic | 20.0% |
| !! | TTTATTGTATGAAAAGATAC+TGG | - | chr4.1:3077160-3077179 | MS.gene049084:intron | 20.0% |
| !! | TTTGAACTTATTGGTAAATA+GGG | - | chr4.1:3078126-3078145 | MS.gene049084:intron | 20.0% |
| !!! | ATTTATAGCTGATAACTTTT+TGG | - | chr4.1:3078187-3078206 | MS.gene049084:intron | 20.0% |
| !!! | ATTTTAAATGATCTTTCAAG+AGG | + | chr4.1:3077893-3077912 | None:intergenic | 20.0% |
| !!! | CATTCTAAATAAACATTTTC+CGG | - | chr4.1:3078384-3078403 | MS.gene049084:intron | 20.0% |
| !!! | GAAAATGTTTATTTAGAATG+AGG | + | chr4.1:3078384-3078403 | None:intergenic | 20.0% |
| ! | AAATGAAGTTACCAAAATTG+AGG | - | chr4.1:3076547-3076566 | MS.gene049084:CDS | 25.0% |
| ! | AATAAATCATCATTATGTCG+AGG | - | chr4.1:3077993-3078012 | MS.gene049084:intron | 25.0% |
| ! | ACAATGAAATTATCAACTCA+AGG | + | chr4.1:3078410-3078429 | None:intergenic | 25.0% |
| ! | ATGAACATATGGGAAAAATT+TGG | - | chr4.1:3077240-3077259 | MS.gene049084:intron | 25.0% |
| ! | ATTAAAGTTGTGAATCTATG+TGG | - | chr4.1:3076782-3076801 | MS.gene049084:CDS | 25.0% |
| ! | ATTTCAATTTCAACCTTGTA+AGG | - | chr4.1:3077611-3077630 | MS.gene049084:intron | 25.0% |
| ! | CACTTGTAAAATCATTTGTT+TGG | - | chr4.1:3077114-3077133 | MS.gene049084:intron | 25.0% |
| ! | CATTTAAGAATTGAATAGGT+AGG | - | chr4.1:3076897-3076916 | MS.gene049084:intron | 25.0% |
| ! | CTCTAATTTCAATTGATGAA+TGG | + | chr4.1:3078095-3078114 | None:intergenic | 25.0% |
| ! | GAAAAATAAAGAGGGAAAAA+AGG | - | chr4.1:3077484-3077503 | MS.gene049084:intron | 25.0% |
| ! | GAAATTCTCCATATAATACA+GGG | + | chr4.1:3077027-3077046 | None:intergenic | 25.0% |
| ! | GTTTGAACTTATTGGTAAAT+AGG | - | chr4.1:3078125-3078144 | MS.gene049084:intron | 25.0% |
| ! | TAGAAAATAACCTTTGTGTA+TGG | - | chr4.1:3078547-3078566 | MS.gene049084:CDS | 25.0% |
| ! | TATTGGAAATTGTGAATACA+GGG | - | chr4.1:3077052-3077071 | MS.gene049084:intron | 25.0% |
| ! | TATTTATCACTCACTCAAAT+TGG | + | chr4.1:3077919-3077938 | None:intergenic | 25.0% |
| ! | TCATATCAATCTCAACTATA+AGG | - | chr4.1:3077321-3077340 | MS.gene049084:intron | 25.0% |
| ! | TGAAATTCTCCATATAATAC+AGG | + | chr4.1:3077028-3077047 | None:intergenic | 25.0% |
| ! | TTATTGGAAATTGTGAATAC+AGG | - | chr4.1:3077051-3077070 | MS.gene049084:intron | 25.0% |
| ! | TTCTTAAATATGCTTACATC+AGG | + | chr4.1:3076434-3076453 | None:intergenic | 25.0% |
| ! | TTGTAAAATCATTTGTTTGG+AGG | - | chr4.1:3077117-3077136 | MS.gene049084:intron | 25.0% |
| !! | AAGCATATTTAAGAAGCTTT+TGG | - | chr4.1:3076439-3076458 | MS.gene049084:intron | 25.0% |
| !! | ATGATGATTTATTTCTTGCT+TGG | + | chr4.1:3077986-3078005 | None:intergenic | 25.0% |
| !! | TTATTTCTTGCTTGGATATT+TGG | + | chr4.1:3077978-3077997 | None:intergenic | 25.0% |
| !! | TTTATTTAGAATGAGGGAAA+TGG | + | chr4.1:3078377-3078396 | None:intergenic | 25.0% |
| !! | TTTTCATCATTTGCAGATTT+TGG | - | chr4.1:3076580-3076599 | MS.gene049084:CDS | 25.0% |
| !!! | AAATATGCAGTGAAAGTATT+AGG | - | chr4.1:3077428-3077447 | MS.gene049084:intron | 25.0% |
| !!! | AGAATCAATTTGTTGAATGT+TGG | + | chr4.1:3079036-3079055 | None:intergenic | 25.0% |
| !!! | ATACACAAAGGTTATTTTCT+AGG | + | chr4.1:3078548-3078567 | None:intergenic | 25.0% |
| !!! | GAATCAATTTGTTGAATGTT+GGG | + | chr4.1:3079035-3079054 | None:intergenic | 25.0% |
| AAACAAACGACTCTAAGTTA+AGG | + | chr4.1:3078841-3078860 | None:intergenic | 30.0% | |
| AAATTGTGAATACAGGGAAT+AGG | - | chr4.1:3077058-3077077 | MS.gene049084:intron | 30.0% | |
| AACCAAATAGAATCAATCGA+AGG | - | chr4.1:3078474-3078493 | MS.gene049084:intron | 30.0% | |
| AAGTTGAGGTATGAAATTGT+AGG | - | chr4.1:3077352-3077371 | MS.gene049084:intron | 30.0% | |
| AATGATTTAAAGGAACAGTC+TGG | - | chr4.1:3077846-3077865 | MS.gene049084:intron | 30.0% | |
| AATGGTATCACTAAAATGGA+AGG | - | chr4.1:3078253-3078272 | MS.gene049084:CDS | 30.0% | |
| AATTGTGAATACAGGGAATA+GGG | - | chr4.1:3077059-3077078 | MS.gene049084:intron | 30.0% | |
| AATTTCAACCTTGTAAGGTT+TGG | - | chr4.1:3077616-3077635 | MS.gene049084:intron | 30.0% | |
| AGAGGAATGTAAGTATTAAG+AGG | + | chr4.1:3078032-3078051 | None:intergenic | 30.0% | |
| AGGAATAAACATACTGTGTT+AGG | + | chr4.1:3078354-3078373 | None:intergenic | 30.0% | |
| AGTTGAGATTGATATGAACT+TGG | + | chr4.1:3077318-3077337 | None:intergenic | 30.0% | |
| ATAAAAAAGGACAATGCAGT+AGG | + | chr4.1:3077700-3077719 | None:intergenic | 30.0% | |
| ATCATCAACAACAACTACAA+CGG | - | chr4.1:3076037-3076056 | MS.gene049084:CDS | 30.0% | |
| ATGATAAGCAGAAAGATGAA+GGG | + | chr4.1:3078786-3078805 | None:intergenic | 30.0% | |
| ATGTGAATCCAAATTTATCG+TGG | - | chr4.1:3077289-3077308 | MS.gene049084:intron | 30.0% | |
| ATTGCAGATTAGAAGATTTG+TGG | - | chr4.1:3078442-3078461 | MS.gene049084:intron | 30.0% | |
| ATTTCAACCTTGTAAGGTTT+GGG | - | chr4.1:3077617-3077636 | MS.gene049084:intron | 30.0% | |
| CAACGCACATAGTATAAAAA+AGG | + | chr4.1:3077713-3077732 | None:intergenic | 30.0% | |
| GTTGAGATTGATATGAACTT+GGG | + | chr4.1:3077317-3077336 | None:intergenic | 30.0% | |
| TAAAAAAGGACAATGCAGTA+GGG | + | chr4.1:3077699-3077718 | None:intergenic | 30.0% | |
| TCACAATGGTATCACTAAAA+TGG | - | chr4.1:3078249-3078268 | MS.gene049084:CDS | 30.0% | |
| TCATCTTACCCTGTATTATA+TGG | - | chr4.1:3077016-3077035 | MS.gene049084:intron | 30.0% | |
| TCTTAATACTTACATTCCTC+TGG | - | chr4.1:3078031-3078050 | MS.gene049084:intron | 30.0% | |
| TGCTTTCAGTTTGAACTTAT+TGG | - | chr4.1:3078117-3078136 | MS.gene049084:intron | 30.0% | |
| TTAATAAATCCCCACATTGT+GGG | + | chr4.1:3077463-3077482 | None:intergenic | 30.0% | |
| TTATACTAGCGTATAAATGG+AGG | - | chr4.1:3077191-3077210 | MS.gene049084:intron | 30.0% | |
| TTGAGATTGATATGAACTTG+GGG | + | chr4.1:3077316-3077335 | None:intergenic | 30.0% | |
| TTTAATAAATCCCCACATTG+TGG | + | chr4.1:3077464-3077483 | None:intergenic | 30.0% | |
| ! | ATCCTTCGATTGATTCTATT+TGG | + | chr4.1:3078479-3078498 | None:intergenic | 30.0% |
| ! | ATGTTCAATCTCCTCAATTT+TGG | + | chr4.1:3076561-3076580 | None:intergenic | 30.0% |
| ! | TTAACTAACCCGTAATTTGT+TGG | + | chr4.1:3076615-3076634 | None:intergenic | 30.0% |
| ! | TTCACTGCATATTTTCAAAC+TGG | + | chr4.1:3077422-3077441 | None:intergenic | 30.0% |
| ! | TTGATGATACATCTAAAACC+CGG | + | chr4.1:3078300-3078319 | None:intergenic | 30.0% |
| !! | ATTGATGAATGGCTATTTTC+TGG | + | chr4.1:3078084-3078103 | None:intergenic | 30.0% |
| !! | GTTATTTTCTAGGTAGATTG+TGG | + | chr4.1:3078538-3078557 | None:intergenic | 30.0% |
| !! | TGATAACTTTTTGGCATACA+GGG | - | chr4.1:3078196-3078215 | MS.gene049084:intron | 30.0% |
| !! | TTACGGGTTAGTTAATGTTA+TGG | - | chr4.1:3076620-3076639 | MS.gene049084:CDS | 30.0% |
| AACGAAATTGCTTCGTTACA+TGG | - | chr4.1:3076479-3076498 | MS.gene049084:intron | 35.0% | |
| AACTCGGTTCCAACAAATTA+CGG | - | chr4.1:3076603-3076622 | MS.gene049084:CDS | 35.0% | |
| AACTTATTGGTAAATAGGGC+TGG | - | chr4.1:3078130-3078149 | MS.gene049084:intron | 35.0% | |
| AATCGTCTTACTTCGATGAT+AGG | - | chr4.1:3076839-3076858 | MS.gene049084:CDS | 35.0% | |
| ACTATCAGTTGATCTAGTTG+GGG | - | chr4.1:3078657-3078676 | MS.gene049084:CDS | 35.0% | |
| ACTTATTGGTAAATAGGGCT+GGG | - | chr4.1:3078131-3078150 | MS.gene049084:intron | 35.0% | |
| AGAATGATGAGATTTACCAG+AGG | + | chr4.1:3078050-3078069 | None:intergenic | 35.0% | |
| ATCAAATAAGCTAACCTCTG+TGG | - | chr4.1:3078315-3078334 | MS.gene049084:CDS | 35.0% | |
| CACTATCAGTTGATCTAGTT+GGG | - | chr4.1:3078656-3078675 | MS.gene049084:CDS | 35.0% | |
| CAGAGAAATACTTTCTCTGA+AGG | - | chr4.1:3077640-3077659 | MS.gene049084:intron | 35.0% | |
| CATGATAAGCAGAAAGATGA+AGG | + | chr4.1:3078787-3078806 | None:intergenic | 35.0% | |
| CTGATGAAAATTGCACGAAA+AGG | + | chr4.1:3078584-3078603 | None:intergenic | 35.0% | |
| CTTTCTGCTTATCATGAATG+TGG | - | chr4.1:3078791-3078810 | MS.gene049084:intron | 35.0% | |
| GAAAAAAGGAAATGCTGATG+TGG | - | chr4.1:3077498-3077517 | MS.gene049084:intron | 35.0% | |
| GAACTATACTTGAGTCACAA+TGG | - | chr4.1:3078235-3078254 | MS.gene049084:CDS | 35.0% | |
| GATCTTTCAAGAGGTAGAAT+TGG | + | chr4.1:3077884-3077903 | None:intergenic | 35.0% | |
| GGATTCACATTAATTAGCAC+TGG | + | chr4.1:3077279-3077298 | None:intergenic | 35.0% | |
| TACTTCGATGATAGGATTTG+AGG | - | chr4.1:3076847-3076866 | MS.gene049084:CDS | 35.0% | |
| TCAATCTCAACTATAAGGAC+TGG | - | chr4.1:3077326-3077345 | MS.gene049084:intron | 35.0% | |
| TGAAATTATCAACTCAAGGC+CGG | + | chr4.1:3078406-3078425 | None:intergenic | 35.0% | |
| TTAGGGGAGTCAGTTATATA+GGG | - | chr4.1:3077552-3077571 | MS.gene049084:intron | 35.0% | |
| ! | ACTGCATATTTTCAAACTGG+TGG | + | chr4.1:3077419-3077438 | None:intergenic | 35.0% |
| ! | ATAAGGACTGGTAAAAGTTG+AGG | - | chr4.1:3077338-3077357 | MS.gene049084:intron | 35.0% |
| ! | ATTTAGAATGAGGGAAATGG+AGG | + | chr4.1:3078374-3078393 | None:intergenic | 35.0% |
| ! | TGGTTTTTCTCAATGCAAAG+CGG | - | chr4.1:3078811-3078830 | MS.gene049084:CDS | 35.0% |
| !! | ATGGCTATTTTCTGGAAATG+TGG | + | chr4.1:3078076-3078095 | None:intergenic | 35.0% |
| !! | CTGATAACTTTTTGGCATAC+AGG | - | chr4.1:3078195-3078214 | MS.gene049084:intron | 35.0% |
| !! | TACGATTGGCTTAATATCGA+GGG | - | chr4.1:3076935-3076954 | MS.gene049084:intron | 35.0% |
| !! | TGGCTATTTTCTGGAAATGT+GGG | + | chr4.1:3078075-3078094 | None:intergenic | 35.0% |
| !! | TTACGATTGGCTTAATATCG+AGG | - | chr4.1:3076934-3076953 | MS.gene049084:intron | 35.0% |
| !!! | CATTTGCAGATTTTGGAACT+CGG | - | chr4.1:3076587-3076606 | MS.gene049084:CDS | 35.0% |
| !!! | GAGAGAGAGTTTTTTGAGAT+CGG | + | chr4.1:3076219-3076238 | None:intergenic | 35.0% |
| !!! | TTTTTTGAGATCGGAGAGTT+GGG | + | chr4.1:3076210-3076229 | None:intergenic | 35.0% |
| AATTGCTTCGTTACATGGTG+TGG | - | chr4.1:3076484-3076503 | MS.gene049084:intron | 40.0% | |
| AATTTGCAGGAGTTATGGCT+TGG | - | chr4.1:3076749-3076768 | MS.gene049084:CDS | 40.0% | |
| ACTCGGTTCCAACAAATTAC+GGG | - | chr4.1:3076604-3076623 | MS.gene049084:CDS | 40.0% | |
| AGAACCTAGGAGAAGAAAGA+GGG | + | chr4.1:3076318-3076337 | None:intergenic | 40.0% | |
| AGAGAGTCATCATTCTGACA+AGG | - | chr4.1:3077781-3077800 | MS.gene049084:intron | 40.0% | |
| AGATGCAATTCATGAGCAAG+AGG | - | chr4.1:3077817-3077836 | MS.gene049084:intron | 40.0% | |
| ATAACTCCTGCAAATTCACC+AGG | + | chr4.1:3076745-3076764 | None:intergenic | 40.0% | |
| CAACTATACTGCCATCCTAA+GGG | - | chr4.1:3079001-3079020 | MS.gene049084:CDS | 40.0% | |
| CCAACTAGATCAACTGATAG+TGG | + | chr4.1:3078658-3078677 | None:intergenic | 40.0% | |
| CCACTATCAGTTGATCTAGT+TGG | - | chr4.1:3078655-3078674 | MS.gene049084:CDS | 40.0% | |
| CGACGAATCATCAACCTTAT+TGG | - | chr4.1:3076076-3076095 | MS.gene049084:CDS | 40.0% | |
| CTTAGGATGGCAGTATAGTT+GGG | + | chr4.1:3079002-3079021 | None:intergenic | 40.0% | |
| CTTAGGGGAGTCAGTTATAT+AGG | - | chr4.1:3077551-3077570 | MS.gene049084:intron | 40.0% | |
| CTTATTGGTAAATAGGGCTG+GGG | - | chr4.1:3078132-3078151 | MS.gene049084:intron | 40.0% | |
| CTTTGCTCTATGGGTAGTTA+GGG | - | chr4.1:3077665-3077684 | MS.gene049084:intron | 40.0% | |
| GCAAGATTATGCACACTTCA+TGG | + | chr4.1:3078692-3078711 | None:intergenic | 40.0% | |
| GTAACTGGTGAGATCCAATA+AGG | + | chr4.1:3076093-3076112 | None:intergenic | 40.0% | |
| GTTATGAATGTCATCCACAG+AGG | + | chr4.1:3078332-3078351 | None:intergenic | 40.0% | |
| TAACTCCTGCAAATTCACCA+GGG | + | chr4.1:3076744-3076763 | None:intergenic | 40.0% | |
| TGCGTGTGTTATCCAACTTA+GGG | - | chr4.1:3077535-3077554 | MS.gene049084:intron | 40.0% | |
| TGGTGAATTTGCAGGAGTTA+TGG | - | chr4.1:3076744-3076763 | MS.gene049084:CDS | 40.0% | |
| TGTCATCTTTAGCCAATCTC+CGG | - | chr4.1:3078278-3078297 | MS.gene049084:CDS | 40.0% | |
| TGTTGGGAAAGATTTCCCTT+AGG | + | chr4.1:3079019-3079038 | None:intergenic | 40.0% | |
| TTATTGGTAAATAGGGCTGG+GGG | - | chr4.1:3078133-3078152 | MS.gene049084:intron | 40.0% | |
| TTTGCTCTATGGGTAGTTAG+GGG | - | chr4.1:3077666-3077685 | MS.gene049084:intron | 40.0% | |
| ! | TACATCTAAAACCCGGAGAT+TGG | + | chr4.1:3078293-3078312 | None:intergenic | 40.0% |
| ! | TATAACTGACTCCCCTAAGT+TGG | + | chr4.1:3077550-3077569 | None:intergenic | 40.0% |
| !! | ATCAATCGAAGGATTTGCTG+AGG | - | chr4.1:3078485-3078504 | MS.gene049084:CDS | 40.0% |
| !!! | GTTTTTTGAGATCGGAGAGT+TGG | + | chr4.1:3076211-3076230 | None:intergenic | 40.0% |
| AAATCCCCACATTGTGGGTT+TGG | + | chr4.1:3077458-3077477 | None:intergenic | 45.0% | |
| AACGCATCGAAACAGAACCT+AGG | + | chr4.1:3076331-3076350 | None:intergenic | 45.0% | |
| AACTACAACGGCTACAGATC+TGG | - | chr4.1:3076049-3076068 | MS.gene049084:CDS | 45.0% | |
| ATCCAGACTTTCTTTCCTGC+AGG | - | chr4.1:3078968-3078987 | MS.gene049084:CDS | 45.0% | |
| CAGAACCTAGGAGAAGAAAG+AGG | + | chr4.1:3076319-3076338 | None:intergenic | 45.0% | |
| CCAACTATACTGCCATCCTA+AGG | - | chr4.1:3079000-3079019 | MS.gene049084:CDS | 45.0% | |
| CCTTAGGATGGCAGTATAGT+TGG | + | chr4.1:3079003-3079022 | None:intergenic | 45.0% | |
| CTCCATTATCACTACCTACG+AGG | - | chr4.1:3078739-3078758 | MS.gene049084:intron | 45.0% | |
| CTGAAGGAGCTTTGCTCTAT+GGG | - | chr4.1:3077656-3077675 | MS.gene049084:intron | 45.0% | |
| CTGCGTGTGTTATCCAACTT+AGG | - | chr4.1:3077534-3077553 | MS.gene049084:intron | 45.0% | |
| CTTGGGGACCACGATAAATT+TGG | + | chr4.1:3077300-3077319 | None:intergenic | 45.0% | |
| CTTTCCCTCTTTCTTCTCCT+AGG | - | chr4.1:3076311-3076330 | MS.gene049084:intron | 45.0% | |
| GACCTCGTAGGTAGTGATAA+TGG | + | chr4.1:3078744-3078763 | None:intergenic | 45.0% | |
| GAGAGTGGATAAACGATTGG+CGG | + | chr4.1:3076174-3076193 | None:intergenic | 45.0% | |
| GCGTGTGTTATCCAACTTAG+GGG | - | chr4.1:3077536-3077555 | MS.gene049084:intron | 45.0% | |
| GCTTTGCTCTATGGGTAGTT+AGG | - | chr4.1:3077664-3077683 | MS.gene049084:intron | 45.0% | |
| GGGAAAGATTTCCCTTAGGA+TGG | + | chr4.1:3079015-3079034 | None:intergenic | 45.0% | |
| GTCATCTTTAGCCAATCTCC+GGG | - | chr4.1:3078279-3078298 | MS.gene049084:CDS | 45.0% | |
| GTCGAGAGTGGATAAACGAT+TGG | + | chr4.1:3076177-3076196 | None:intergenic | 45.0% | |
| GTCTGAATAGAGAGCGAGAA+GGG | - | chr4.1:3077574-3077593 | MS.gene049084:intron | 45.0% | |
| TCTGAAGGAGCTTTGCTCTA+TGG | - | chr4.1:3077655-3077674 | MS.gene049084:intron | 45.0% | |
| TCTGAATAGAGAGCGAGAAG+GGG | - | chr4.1:3077575-3077594 | MS.gene049084:intron | 45.0% | |
| TTCGTTACATGGTGTGGCTA+GGG | - | chr4.1:3076490-3076509 | MS.gene049084:intron | 45.0% | |
| TTCTCTGCCCAAACCTTACA+AGG | + | chr4.1:3077627-3077646 | None:intergenic | 45.0% | |
| !! | CGTCGGTGATTAGGTTTTGA+CGG | + | chr4.1:3076241-3076260 | None:intergenic | 45.0% |
| !! | TAATTAGCACTGGCAGTGCT+TGG | + | chr4.1:3077269-3077288 | None:intergenic | 45.0% |
| !!! | TTTTTTTTTTTTTATTATTC+AGG | - | chr4.1:3076373-3076392 | MS.gene049084:intron | 5.0% |
| AAGTACCTCGAGAGAGGAGA+GGG | + | chr4.1:3076294-3076313 | None:intergenic | 50.0% | |
| ACCACCAAACCCACAATGTG+GGG | - | chr4.1:3077451-3077470 | MS.gene049084:intron | 50.0% | |
| AGCCTGCAGGAAAGAAAGTC+TGG | + | chr4.1:3078973-3078992 | None:intergenic | 50.0% | |
| ATCACTACCTACGAGGTCGA+TGG | - | chr4.1:3078746-3078765 | MS.gene049084:intron | 50.0% | |
| ATTGGCGGTGAGGTCTAACT+CGG | + | chr4.1:3076159-3076178 | None:intergenic | 50.0% | |
| CTGAATAGAGAGCGAGAAGG+GGG | - | chr4.1:3077576-3077595 | MS.gene049084:intron | 50.0% | |
| CTTCGTTACATGGTGTGGCT+AGG | - | chr4.1:3076489-3076508 | MS.gene049084:intron | 50.0% | |
| GACCACCAAACCCACAATGT+GGG | - | chr4.1:3077450-3077469 | MS.gene049084:intron | 50.0% | |
| GAGATCGTGAAGCTGGTAAC+TGG | + | chr4.1:3076108-3076127 | None:intergenic | 50.0% | |
| GATGGAGAATTTGCAGACCC+TGG | - | chr4.1:3076724-3076743 | MS.gene049084:intron | 50.0% | |
| GGAAATGCTGATGTGGCACA+TGG | - | chr4.1:3077505-3077524 | MS.gene049084:intron | 50.0% | |
| GGTCTGAATAGAGAGCGAGA+AGG | - | chr4.1:3077573-3077592 | MS.gene049084:intron | 50.0% | |
| TATGTGCGTTGTTGTGACGC+TGG | - | chr4.1:3077722-3077741 | MS.gene049084:intron | 50.0% | |
| TGGATAAACGATTGGCGGTG+AGG | + | chr4.1:3076169-3076188 | None:intergenic | 50.0% | |
| ! | AAAGTACCTCGAGAGAGGAG+AGG | + | chr4.1:3076295-3076314 | None:intergenic | 50.0% |
| ! | AGGTCTAACTCGGTGAGGTT+AGG | + | chr4.1:3076149-3076168 | None:intergenic | 50.0% |
| ! | TCTAACTCGGTGAGGTTAGG+AGG | + | chr4.1:3076146-3076165 | None:intergenic | 50.0% |
| AGCGAGAAGGGGGATCATTG+CGG | - | chr4.1:3077586-3077605 | MS.gene049084:intron | 55.0% | |
| AGTTGGGTGACTTAGCCTGC+AGG | + | chr4.1:3078986-3079005 | None:intergenic | 55.0% | |
| CAGTTTGCCATCGACCTCGT+AGG | + | chr4.1:3078756-3078775 | None:intergenic | 55.0% | |
| CCAGGAAGAGAGAGGAACGA+CGG | + | chr4.1:3076267-3076286 | None:intergenic | 55.0% | |
| CTGAGTCGAGATCGTGAAGC+TGG | + | chr4.1:3076115-3076134 | None:intergenic | 55.0% | |
| GCAGACCCTGGTGAATTTGC+AGG | - | chr4.1:3076736-3076755 | MS.gene049084:intron | 55.0% | |
| GGACCACCAAACCCACAATG+TGG | - | chr4.1:3077449-3077468 | MS.gene049084:intron | 55.0% | |
| TCCCCACATTGTGGGTTTGG+TGG | + | chr4.1:3077455-3077474 | None:intergenic | 55.0% | |
| TGCTGATGTGGCACATGGCA+AGG | - | chr4.1:3077510-3077529 | MS.gene049084:intron | 55.0% | |
| ! | AGGGTGTTCCAGGAAGAGAG+AGG | + | chr4.1:3076275-3076294 | None:intergenic | 55.0% |
| !! | GAGGGAAAGTACCTCGAGAG+AGG | + | chr4.1:3076300-3076319 | None:intergenic | 55.0% |
| CCGTCGTTCCTCTCTCTTCC+TGG | - | chr4.1:3076264-3076283 | MS.gene049084:intron | 60.0% | |
| GAACACCCTCTCCTCTCTCG+AGG | - | chr4.1:3076286-3076305 | MS.gene049084:intron | 60.0% | |
| ! | CGGTGAGGTCTAACTCGGTG+AGG | + | chr4.1:3076154-3076173 | None:intergenic | 60.0% |
| !! | GAGAGAGGAGAGGGTGTTCC+AGG | + | chr4.1:3076285-3076304 | None:intergenic | 60.0% |
| !! | GGATTTGCTGAGGCTGTCGC+TGG | - | chr4.1:3078495-3078514 | MS.gene049084:CDS | 60.0% |
| CGGAGAGTTGGGCGATGCGA+GGG | + | chr4.1:3076199-3076218 | None:intergenic | 65.0% | |
| GAGAGGAACGACGGCAGCGT+CGG | + | chr4.1:3076258-3076277 | None:intergenic | 65.0% | |
| TCGGAGAGTTGGGCGATGCG+AGG | + | chr4.1:3076200-3076219 | None:intergenic | 65.0% | |
| !! | CGACGGCAGCGTCGGTGATT+AGG | + | chr4.1:3076250-3076269 | None:intergenic | 65.0% |
| GGCGATGCGAGGGTCGAGAG+TGG | + | chr4.1:3076189-3076208 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 3076032 | 3079070 | 3076032 | ID=MS.gene049084 |
| chr4.1 | mRNA | 3076032 | 3079070 | 3076032 | ID=MS.gene049084.t1;Parent=MS.gene049084 |
| chr4.1 | exon | 3078795 | 3079070 | 3078795 | ID=MS.gene049084.t1.exon1;Parent=MS.gene049084.t1 |
| chr4.1 | CDS | 3078795 | 3079070 | 3078795 | ID=cds.MS.gene049084.t1;Parent=MS.gene049084.t1 |
| chr4.1 | exon | 3078477 | 3078707 | 3078477 | ID=MS.gene049084.t1.exon2;Parent=MS.gene049084.t1 |
| chr4.1 | CDS | 3078477 | 3078707 | 3078477 | ID=cds.MS.gene049084.t1;Parent=MS.gene049084.t1 |
| chr4.1 | exon | 3078234 | 3078380 | 3078234 | ID=MS.gene049084.t1.exon3;Parent=MS.gene049084.t1 |
| chr4.1 | CDS | 3078234 | 3078380 | 3078234 | ID=cds.MS.gene049084.t1;Parent=MS.gene049084.t1 |
| chr4.1 | exon | 3076743 | 3076885 | 3076743 | ID=MS.gene049084.t1.exon4;Parent=MS.gene049084.t1 |
| chr4.1 | CDS | 3076743 | 3076885 | 3076743 | ID=cds.MS.gene049084.t1;Parent=MS.gene049084.t1 |
| chr4.1 | exon | 3076539 | 3076653 | 3076539 | ID=MS.gene049084.t1.exon5;Parent=MS.gene049084.t1 |
| chr4.1 | CDS | 3076539 | 3076653 | 3076539 | ID=cds.MS.gene049084.t1;Parent=MS.gene049084.t1 |
| chr4.1 | exon | 3076032 | 3076112 | 3076032 | ID=MS.gene049084.t1.exon6;Parent=MS.gene049084.t1 |
| chr4.1 | CDS | 3076032 | 3076112 | 3076032 | ID=cds.MS.gene049084.t1;Parent=MS.gene049084.t1 |
| Gene Sequence |
| Protein sequence |
