Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05958.t1 | XP_024629644.1 | 97.8 | 136 | 3 | 0 | 21 | 156 | 26 | 161 | 2.60E-64 | 255.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05958.t1 | Q84WJ9 | 75.9 | 137 | 33 | 0 | 21 | 157 | 19 | 155 | 1.4e-50 | 201.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05958.t1 | G7L846 | 97.8 | 136 | 3 | 0 | 21 | 156 | 26 | 161 | 1.9e-64 | 255.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05958.t1 | MTR_8g102770 | 97.697 | 304 | 6 | 1 | 1 | 304 | 7 | 309 | 0.0 | 588 |
| MS.gene05958.t1 | MTR_2g086950 | 29.771 | 262 | 143 | 7 | 64 | 294 | 1 | 252 | 2.93e-14 | 73.2 |
| MS.gene05958.t1 | MTR_2g048210 | 26.699 | 206 | 127 | 2 | 42 | 247 | 204 | 385 | 9.37e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05958.t1 | AT5G19680 | 79.514 | 288 | 59 | 0 | 17 | 304 | 15 | 302 | 2.57e-165 | 462 |
Find 62 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCTTCGATTGATTCTATT+TGG | 0.180392 | 4.3:+2625325 | None:intergenic |
| ATGTTCAATCTCCTCAATTT+TGG | 0.205248 | 4.3:+2627241 | None:intergenic |
| CGACGAATCATCAACCTTAT+TGG | 0.224346 | 4.3:-2627726 | MS.gene05958:CDS |
| CCGTCGTTCCTCTCTCTTCC+TGG | 0.241921 | 4.3:-2627538 | MS.gene05958:CDS |
| TCACAATGGTATCACTAAAA+TGG | 0.268063 | 4.3:-2625552 | MS.gene05958:CDS |
| GAGAGAGGAGAGGGTGTTCC+AGG | 0.304542 | 4.3:+2627520 | None:intergenic |
| GCAGACCCTGGTGAATTTGC+AGG | 0.321077 | 4.3:-2627065 | MS.gene05958:CDS |
| AACTCGGTTCCAACAAATTA+CGG | 0.328564 | 4.3:-2627196 | MS.gene05958:CDS |
| CGACGGCAGCGTCGGTGATT+AGG | 0.333569 | 4.3:+2627555 | None:intergenic |
| AAGCATATTTAAGAAGCTTT+TGG | 0.349027 | 4.3:-2627360 | MS.gene05958:CDS |
| TTAACTAACCCGTAATTTGT+TGG | 0.363726 | 4.3:+2627187 | None:intergenic |
| AATCGTCTTACTTCGATGAT+AGG | 0.364815 | 4.3:-2626962 | MS.gene05958:CDS |
| AGGAATAAACATACTGTGTT+AGG | 0.379864 | 4.3:+2625450 | None:intergenic |
| TGGTGAATTTGCAGGAGTTA+TGG | 0.389196 | 4.3:-2627057 | MS.gene05958:CDS |
| ATTGCAGATTAGAAGATTTG+TGG | 0.408097 | 4.3:-2625359 | MS.gene05958:intron |
| CTTCGTTACATGGTGTGGCT+AGG | 0.408654 | 4.3:-2627310 | MS.gene05958:CDS |
| TTCTTAAATATGCTTACATC+AGG | 0.411181 | 4.3:+2627368 | None:intergenic |
| AACTACAACGGCCACAGATC+TGG | 0.414641 | 4.3:-2627753 | MS.gene05958:CDS |
| AACGAAATTGCTTCGTTACA+TGG | 0.421794 | 4.3:-2627320 | MS.gene05958:CDS |
| TACTTCGATGATAGGATTTG+AGG | 0.426192 | 4.3:-2626954 | MS.gene05958:intron |
| TGTCATCTTTAGCCAATCTC+CGG | 0.426274 | 4.3:-2625523 | MS.gene05958:CDS |
| GTAACTGGTGAGATCCAATA+AGG | 0.442978 | 4.3:+2627712 | None:intergenic |
| TACATCTAAAACCCGGAGAT+TGG | 0.458207 | 4.3:+2625511 | None:intergenic |
| GAGATCGTGAAGCTGGTAAC+TGG | 0.459022 | 4.3:+2627697 | None:intergenic |
| TTCGTTACATGGTGTGGCTA+GGG | 0.464501 | 4.3:-2627309 | MS.gene05958:CDS |
| AGGTCTAACTCGGTGAGGTT+AGG | 0.467337 | 4.3:+2627656 | None:intergenic |
| ACTCGGTTCCAACAAATTAC+GGG | 0.472204 | 4.3:-2627195 | MS.gene05958:intron |
| GGATTTGCTGAGGCTGTCGC+TGG | 0.475973 | 4.3:-2625306 | MS.gene05958:CDS |
| CTGAGTCGAGATCGTGAAGC+TGG | 0.502561 | 4.3:+2627690 | None:intergenic |
| AATTTGCAGGAGTTATGGCT+TGG | 0.505707 | 4.3:-2627052 | MS.gene05958:CDS |
| ATTAAAGTTGTGAATCTATG+TGG | 0.507176 | 4.3:-2627019 | MS.gene05958:CDS |
| AAATGAAGTTACCAAAATTG+AGG | 0.544893 | 4.3:-2627252 | MS.gene05958:CDS |
| GTCGAGAGTGGATAAACGAT+TGG | 0.547251 | 4.3:+2627628 | None:intergenic |
| CGGAGAGTTGGGCGATGCGA+GGG | 0.552820 | 4.3:+2627606 | None:intergenic |
| GTCATCTTTAGCCAATCTCC+GGG | 0.558464 | 4.3:-2625522 | MS.gene05958:CDS |
| AAGTACCTCGAGAGAGGAGA+GGG | 0.559541 | 4.3:+2627511 | None:intergenic |
| ATAACTCCTGCAAATTCACC+AGG | 0.560116 | 4.3:+2627059 | None:intergenic |
| TCTAACTCGGTGAGGTTAGG+AGG | 0.569923 | 4.3:+2627659 | None:intergenic |
| AATTGCTTCGTTACATGGTG+TGG | 0.573405 | 4.3:-2627315 | MS.gene05958:CDS |
| GAGAGGAACGACGGCAGCGT+CGG | 0.580408 | 4.3:+2627547 | None:intergenic |
| AATGGTATCACTAAAATGGA+AGG | 0.580869 | 4.3:-2625548 | MS.gene05958:CDS |
| TCGGAGAGTTGGGCGATGCG+AGG | 0.590093 | 4.3:+2627605 | None:intergenic |
| TGGATAAACGATTGGCGGTG+AGG | 0.593257 | 4.3:+2627636 | None:intergenic |
| GGCGATGCGAGGGTCGAGAG+TGG | 0.600398 | 4.3:+2627616 | None:intergenic |
| GAGGGAAAGTACCTCGAGAG+AGG | 0.606087 | 4.3:+2627505 | None:intergenic |
| GAGAGTGGATAAACGATTGG+CGG | 0.606923 | 4.3:+2627631 | None:intergenic |
| ATCAAATAAGCTAACCTCTG+TGG | 0.608445 | 4.3:-2625486 | MS.gene05958:CDS |
| AAAGTACCTCGAGAGAGGAG+AGG | 0.625909 | 4.3:+2627510 | None:intergenic |
| CCAGGAAGAGAGAGGAACGA+CGG | 0.627554 | 4.3:+2627538 | None:intergenic |
| AACCAAATAGAATCAATCGA+AGG | 0.629752 | 4.3:-2625327 | MS.gene05958:CDS |
| GAACACCCTCTCCTCTCTCG+AGG | 0.637399 | 4.3:-2627516 | MS.gene05958:intron |
| GAACTATACTTGAGTCACAA+TGG | 0.639462 | 4.3:-2625566 | MS.gene05958:CDS |
| TTCGTCGTCGTCCAGATCTG+TGG | 0.643101 | 4.3:+2627742 | None:intergenic |
| ATCATCAACAACAACTACAA+CGG | 0.654534 | 4.3:-2627765 | MS.gene05958:CDS |
| ATCAATCGAAGGATTTGCTG+AGG | 0.655166 | 4.3:-2625316 | MS.gene05958:CDS |
| TTGATGATACATCTAAAACC+CGG | 0.659966 | 4.3:+2625504 | None:intergenic |
| ATTGGCGGTGAGGTCTAACT+CGG | 0.662369 | 4.3:+2627646 | None:intergenic |
| CGGTGAGGTCTAACTCGGTG+AGG | 0.663976 | 4.3:+2627651 | None:intergenic |
| AGGGTGTTCCAGGAAGAGAG+AGG | 0.678547 | 4.3:+2627530 | None:intergenic |
| GATGGAGAATTTGCAGACCC+TGG | 0.702701 | 4.3:-2627077 | MS.gene05958:CDS |
| GTTATGAATGTCATCCACAG+AGG | 0.718539 | 4.3:+2625472 | None:intergenic |
| TAACTCCTGCAAATTCACCA+GGG | 0.734852 | 4.3:+2627060 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTTTTTTT+AGG | - | chr4.3:2625928-2625947 | MS.gene05958:intron | 0.0% |
| !! | TTATTAAAGAAAAATAAAGA+GGG | - | chr4.3:2626705-2626724 | MS.gene05958:intron | 10.0% |
| !! | TTTATTAAAGAAAAATAAAG+AGG | - | chr4.3:2626704-2626723 | MS.gene05958:intron | 10.0% |
| !! | AAATTTAAACATGAACATAT+GGG | - | chr4.3:2626459-2626478 | MS.gene05958:intron | 15.0% |
| !! | ATTACATTTAAGAATTGAAT+AGG | - | chr4.3:2626122-2626141 | MS.gene05958:intron | 15.0% |
| !! | ATTATAAATACAATAGCAAA+AGG | + | chr4.3:2625897-2625916 | None:intergenic | 15.0% |
| !! | TAAATTTAAACATGAACATA+TGG | - | chr4.3:2626458-2626477 | MS.gene05958:intron | 15.0% |
| !!! | AAAATGTTTATTTAGAATGA+GGG | + | chr4.3:2627612-2627631 | None:intergenic | 15.0% |
| !!! | AATACTTGATAATAATACTT+TGG | - | chr4.3:2627164-2627183 | MS.gene05958:intron | 15.0% |
| !!! | TAGCTATATAACTATTTTAA+AGG | + | chr4.3:2626208-2626227 | None:intergenic | 15.0% |
| !!! | TTTTTTTATTATTCAGGAAT+TGG | - | chr4.3:2625610-2625629 | MS.gene05958:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTAGGTGA+TGG | - | chr4.3:2625935-2625954 | MS.gene05958:intron | 15.0% |
| !! | AAACAAATTCAAATTACGAT+TGG | - | chr4.3:2626150-2626169 | MS.gene05958:intron | 20.0% |
| !! | AAATAGTAGTTATATATAGC+AGG | + | chr4.3:2626624-2626643 | None:intergenic | 20.0% |
| !! | AAATTATACTAGCGTATAAA+TGG | - | chr4.3:2626417-2626436 | MS.gene05958:intron | 20.0% |
| !! | ATGGAGAATTTCAAAATTAT+TGG | - | chr4.3:2626264-2626283 | MS.gene05958:intron | 20.0% |
| !! | GAGGAAAAAAAATGATTTAA+AGG | - | chr4.3:2627065-2627084 | MS.gene05958:CDS | 20.0% |
| !! | TTTATTGTATGAAAAGATAC+TGG | - | chr4.3:2626389-2626408 | MS.gene05958:intron | 20.0% |
| !! | TTTGAACTTATTGGTAAATA+GGG | - | chr4.3:2627355-2627374 | MS.gene05958:CDS | 20.0% |
| !!! | ATTTATAGCTGATAACTTTT+TGG | - | chr4.3:2627416-2627435 | MS.gene05958:intron | 20.0% |
| !!! | ATTTTAAATGATCTTTCAAG+AGG | + | chr4.3:2627122-2627141 | None:intergenic | 20.0% |
| !!! | CATTCTAAATAAACATTTTC+CGG | - | chr4.3:2627613-2627632 | MS.gene05958:CDS | 20.0% |
| !!! | GAAAATGTTTATTTAGAATG+AGG | + | chr4.3:2627613-2627632 | None:intergenic | 20.0% |
| ! | AAATGAAGTTACCAAAATTG+AGG | - | chr4.3:2625778-2625797 | MS.gene05958:intron | 25.0% |
| ! | AATAAATCATCATTATGTCG+AGG | - | chr4.3:2627222-2627241 | MS.gene05958:CDS | 25.0% |
| ! | ACAATGAAATTATCAACTCA+AGG | + | chr4.3:2627639-2627658 | None:intergenic | 25.0% |
| ! | ATGAACATATGGGAAAAATT+TGG | - | chr4.3:2626469-2626488 | MS.gene05958:intron | 25.0% |
| ! | ATTAAAGTTGTGAATCTATG+TGG | - | chr4.3:2626011-2626030 | MS.gene05958:intron | 25.0% |
| ! | ATTTCAATTTCAACCTTGTA+AGG | - | chr4.3:2626840-2626859 | MS.gene05958:intron | 25.0% |
| ! | CACTTGTAAAATCATTTGTT+TGG | - | chr4.3:2626343-2626362 | MS.gene05958:intron | 25.0% |
| ! | CATTTAAGAATTGAATAGGT+AGG | - | chr4.3:2626126-2626145 | MS.gene05958:intron | 25.0% |
| ! | CTCTAATTTCAATTGATGAA+TGG | + | chr4.3:2627324-2627343 | None:intergenic | 25.0% |
| ! | GAAAAATAAAGAGGGAAAAA+AGG | - | chr4.3:2626713-2626732 | MS.gene05958:intron | 25.0% |
| ! | GAAATTCTCCATATAATACA+GGG | + | chr4.3:2626256-2626275 | None:intergenic | 25.0% |
| ! | GTTTGAACTTATTGGTAAAT+AGG | - | chr4.3:2627354-2627373 | MS.gene05958:CDS | 25.0% |
| ! | TATTGGAAATTGTGAATACA+GGG | - | chr4.3:2626281-2626300 | MS.gene05958:intron | 25.0% |
| ! | TATTTATCACTCACTCAAAT+TGG | + | chr4.3:2627148-2627167 | None:intergenic | 25.0% |
| ! | TCATATCAATCTCAACTATA+AGG | - | chr4.3:2626550-2626569 | MS.gene05958:intron | 25.0% |
| ! | TGAAATTCTCCATATAATAC+AGG | + | chr4.3:2626257-2626276 | None:intergenic | 25.0% |
| ! | TTATTGGAAATTGTGAATAC+AGG | - | chr4.3:2626280-2626299 | MS.gene05958:intron | 25.0% |
| ! | TTCTTAAATATGCTTACATC+AGG | + | chr4.3:2625665-2625684 | None:intergenic | 25.0% |
| ! | TTGTAAAATCATTTGTTTGG+AGG | - | chr4.3:2626346-2626365 | MS.gene05958:intron | 25.0% |
| !! | AAGCATATTTAAGAAGCTTT+TGG | - | chr4.3:2625670-2625689 | MS.gene05958:intron | 25.0% |
| !! | ATGATGATTTATTTCTTGCT+TGG | + | chr4.3:2627215-2627234 | None:intergenic | 25.0% |
| !! | TTATTTCTTGCTTGGATATT+TGG | + | chr4.3:2627207-2627226 | None:intergenic | 25.0% |
| !! | TTTATTTAGAATGAGGGAAA+TGG | + | chr4.3:2627606-2627625 | None:intergenic | 25.0% |
| !! | TTTTCATCATTTGCAGATTT+TGG | - | chr4.3:2625811-2625830 | MS.gene05958:intron | 25.0% |
| !!! | AAATATGCAGTGAAAGTATT+AGG | - | chr4.3:2626657-2626676 | MS.gene05958:intron | 25.0% |
| !!! | AAATTACGATTGGCTTAATA+TGG | - | chr4.3:2626160-2626179 | MS.gene05958:intron | 25.0% |
| AAAATGATGAGATTTACCAG+AGG | + | chr4.3:2627279-2627298 | None:intergenic | 30.0% | |
| AAATTGTGAATACAGGGAAT+AGG | - | chr4.3:2626287-2626306 | MS.gene05958:intron | 30.0% | |
| AACCAAATAGAATCAATCGA+AGG | - | chr4.3:2627703-2627722 | MS.gene05958:CDS | 30.0% | |
| AAGTTGAGGTATGAAATTGT+AGG | - | chr4.3:2626581-2626600 | MS.gene05958:intron | 30.0% | |
| AATGATTTAAAGGAACAGTC+TGG | - | chr4.3:2627075-2627094 | MS.gene05958:CDS | 30.0% | |
| AATGGTATCACTAAAATGGA+AGG | - | chr4.3:2627482-2627501 | MS.gene05958:intron | 30.0% | |
| AATTGTGAATACAGGGAATA+GGG | - | chr4.3:2626288-2626307 | MS.gene05958:intron | 30.0% | |
| AATTTCAACCTTGTAAGGTT+TGG | - | chr4.3:2626845-2626864 | MS.gene05958:intron | 30.0% | |
| AGAGGAATGTAAGTATTAAG+AGG | + | chr4.3:2627261-2627280 | None:intergenic | 30.0% | |
| AGGAATAAACATACTGTGTT+AGG | + | chr4.3:2627583-2627602 | None:intergenic | 30.0% | |
| AGTTGAGATTGATATGAACT+TGG | + | chr4.3:2626547-2626566 | None:intergenic | 30.0% | |
| ATAAAAAAGGACAATGCAGT+AGG | + | chr4.3:2626929-2626948 | None:intergenic | 30.0% | |
| ATCATCAACAACAACTACAA+CGG | - | chr4.3:2625265-2625284 | MS.gene05958:CDS | 30.0% | |
| ATGTGAATCCAAATTTATCG+TGG | - | chr4.3:2626518-2626537 | MS.gene05958:intron | 30.0% | |
| ATTGCAGATTAGAAGATTTG+TGG | - | chr4.3:2627671-2627690 | MS.gene05958:CDS | 30.0% | |
| ATTTCAACCTTGTAAGGTTT+GGG | - | chr4.3:2626846-2626865 | MS.gene05958:intron | 30.0% | |
| CAACGCACATAGTATAAAAA+AGG | + | chr4.3:2626942-2626961 | None:intergenic | 30.0% | |
| GTTGAGATTGATATGAACTT+GGG | + | chr4.3:2626546-2626565 | None:intergenic | 30.0% | |
| TAAAAAAGGACAATGCAGTA+GGG | + | chr4.3:2626928-2626947 | None:intergenic | 30.0% | |
| TCACAATGGTATCACTAAAA+TGG | - | chr4.3:2627478-2627497 | MS.gene05958:intron | 30.0% | |
| TCATCTTACCCTGTATTATA+TGG | - | chr4.3:2626245-2626264 | MS.gene05958:intron | 30.0% | |
| TCTTAATACTTACATTCCTC+TGG | - | chr4.3:2627260-2627279 | MS.gene05958:CDS | 30.0% | |
| TGCTTTCAGTTTGAACTTAT+TGG | - | chr4.3:2627346-2627365 | MS.gene05958:CDS | 30.0% | |
| TTAATAAATCCCCACATTGT+GGG | + | chr4.3:2626692-2626711 | None:intergenic | 30.0% | |
| TTATACTAGCGTATAAATGG+AGG | - | chr4.3:2626420-2626439 | MS.gene05958:intron | 30.0% | |
| TTGAGATTGATATGAACTTG+GGG | + | chr4.3:2626545-2626564 | None:intergenic | 30.0% | |
| TTTAATAAATCCCCACATTG+TGG | + | chr4.3:2626693-2626712 | None:intergenic | 30.0% | |
| ! | ATCCTTCGATTGATTCTATT+TGG | + | chr4.3:2627708-2627727 | None:intergenic | 30.0% |
| ! | ATGTTCAATCTCCTCAATTT+TGG | + | chr4.3:2625792-2625811 | None:intergenic | 30.0% |
| ! | TTAACTAACCCGTAATTTGT+TGG | + | chr4.3:2625846-2625865 | None:intergenic | 30.0% |
| ! | TTCACTGCATATTTTCAAAC+TGG | + | chr4.3:2626651-2626670 | None:intergenic | 30.0% |
| ! | TTGATGATACATCTAAAACC+CGG | + | chr4.3:2627529-2627548 | None:intergenic | 30.0% |
| !! | ATTGATGAATGGCTATTTTC+TGG | + | chr4.3:2627313-2627332 | None:intergenic | 30.0% |
| !! | GTTATTTTCTAGGTAGATTG+TGG | + | chr4.3:2627767-2627786 | None:intergenic | 30.0% |
| !! | TGATAACTTTTTGGCATACA+GGG | - | chr4.3:2627425-2627444 | MS.gene05958:intron | 30.0% |
| !! | TTACGGGTTAGTTAATGTTA+TGG | - | chr4.3:2625851-2625870 | MS.gene05958:intron | 30.0% |
| AACGAAATTGCTTCGTTACA+TGG | - | chr4.3:2625710-2625729 | MS.gene05958:intron | 35.0% | |
| AACTCGGTTCCAACAAATTA+CGG | - | chr4.3:2625834-2625853 | MS.gene05958:intron | 35.0% | |
| AACTTATTGGTAAATAGGGC+TGG | - | chr4.3:2627359-2627378 | MS.gene05958:CDS | 35.0% | |
| AATCGTCTTACTTCGATGAT+AGG | - | chr4.3:2626068-2626087 | MS.gene05958:intron | 35.0% | |
| ACTTATTGGTAAATAGGGCT+GGG | - | chr4.3:2627360-2627379 | MS.gene05958:CDS | 35.0% | |
| ATCAAATAAGCTAACCTCTG+TGG | - | chr4.3:2627544-2627563 | MS.gene05958:CDS | 35.0% | |
| CAGAGAAATACTTTCTCTGA+AGG | - | chr4.3:2626869-2626888 | MS.gene05958:intron | 35.0% | |
| GAAAAAAGGAAATGCTGATG+TGG | - | chr4.3:2626727-2626746 | MS.gene05958:intron | 35.0% | |
| GAACTATACTTGAGTCACAA+TGG | - | chr4.3:2627464-2627483 | MS.gene05958:intron | 35.0% | |
| GATCTTTCAAGAGGTAGAAT+TGG | + | chr4.3:2627113-2627132 | None:intergenic | 35.0% | |
| GGATTCACATTAATTAGCAC+TGG | + | chr4.3:2626508-2626527 | None:intergenic | 35.0% | |
| TACTTCGATGATAGGATTTG+AGG | - | chr4.3:2626076-2626095 | MS.gene05958:intron | 35.0% | |
| TCAATCTCAACTATAAGGAC+TGG | - | chr4.3:2626555-2626574 | MS.gene05958:intron | 35.0% | |
| TGAAATTATCAACTCAAGGC+CGG | + | chr4.3:2627635-2627654 | None:intergenic | 35.0% | |
| TTAGGGGAGTCAGTTATATA+GGG | - | chr4.3:2626781-2626800 | MS.gene05958:intron | 35.0% | |
| ! | ACTGCATATTTTCAAACTGG+TGG | + | chr4.3:2626648-2626667 | None:intergenic | 35.0% |
| ! | ATAAGGACTGGTAAAAGTTG+AGG | - | chr4.3:2626567-2626586 | MS.gene05958:intron | 35.0% |
| ! | ATTTAGAATGAGGGAAATGG+AGG | + | chr4.3:2627603-2627622 | None:intergenic | 35.0% |
| !! | ATGGCTATTTTCTGGAAATG+TGG | + | chr4.3:2627305-2627324 | None:intergenic | 35.0% |
| !! | CTGATAACTTTTTGGCATAC+AGG | - | chr4.3:2627424-2627443 | MS.gene05958:intron | 35.0% |
| !! | TACGATTGGCTTAATATGGA+GGG | - | chr4.3:2626164-2626183 | MS.gene05958:intron | 35.0% |
| !! | TGGCTATTTTCTGGAAATGT+GGG | + | chr4.3:2627304-2627323 | None:intergenic | 35.0% |
| !! | TTACGATTGGCTTAATATGG+AGG | - | chr4.3:2626163-2626182 | MS.gene05958:intron | 35.0% |
| !!! | CATTTGCAGATTTTGGAACT+CGG | - | chr4.3:2625818-2625837 | MS.gene05958:intron | 35.0% |
| !!! | GAGAGAGAGTTTTTTGAGAT+CGG | + | chr4.3:2625447-2625466 | None:intergenic | 35.0% |
| !!! | TTTTTTGAGATCGGAGAGTT+GGG | + | chr4.3:2625438-2625457 | None:intergenic | 35.0% |
| AATTGCTTCGTTACATGGTG+TGG | - | chr4.3:2625715-2625734 | MS.gene05958:intron | 40.0% | |
| AATTTGCAGGAGTTATGGCT+TGG | - | chr4.3:2625978-2625997 | MS.gene05958:intron | 40.0% | |
| ACTCGGTTCCAACAAATTAC+GGG | - | chr4.3:2625835-2625854 | MS.gene05958:intron | 40.0% | |
| AGAACCTAGGAGAAGAAAGA+GGG | + | chr4.3:2625546-2625565 | None:intergenic | 40.0% | |
| AGAGAGTCATCATTCTGACA+AGG | - | chr4.3:2627010-2627029 | MS.gene05958:CDS | 40.0% | |
| AGATGCAATTCATGAGCAAG+AGG | - | chr4.3:2627046-2627065 | MS.gene05958:CDS | 40.0% | |
| ATAACTCCTGCAAATTCACC+AGG | + | chr4.3:2625974-2625993 | None:intergenic | 40.0% | |
| CGACGAATCATCAACCTTAT+TGG | - | chr4.3:2625304-2625323 | MS.gene05958:CDS | 40.0% | |
| CTTAGGGGAGTCAGTTATAT+AGG | - | chr4.3:2626780-2626799 | MS.gene05958:intron | 40.0% | |
| CTTATTGGTAAATAGGGCTG+GGG | - | chr4.3:2627361-2627380 | MS.gene05958:CDS | 40.0% | |
| CTTTGCTCTATGGGTAGTTA+GGG | - | chr4.3:2626894-2626913 | MS.gene05958:intron | 40.0% | |
| GTAACTGGTGAGATCCAATA+AGG | + | chr4.3:2625321-2625340 | None:intergenic | 40.0% | |
| GTTATGAATGTCATCCACAG+AGG | + | chr4.3:2627561-2627580 | None:intergenic | 40.0% | |
| TAACTCCTGCAAATTCACCA+GGG | + | chr4.3:2625973-2625992 | None:intergenic | 40.0% | |
| TGCGTGTGTTATCCAACTTA+GGG | - | chr4.3:2626764-2626783 | MS.gene05958:intron | 40.0% | |
| TGGTGAATTTGCAGGAGTTA+TGG | - | chr4.3:2625973-2625992 | MS.gene05958:intron | 40.0% | |
| TGTCATCTTTAGCCAATCTC+CGG | - | chr4.3:2627507-2627526 | MS.gene05958:intron | 40.0% | |
| TTATTGGTAAATAGGGCTGG+GGG | - | chr4.3:2627362-2627381 | MS.gene05958:CDS | 40.0% | |
| TTTGCTCTATGGGTAGTTAG+GGG | - | chr4.3:2626895-2626914 | MS.gene05958:intron | 40.0% | |
| ! | TACATCTAAAACCCGGAGAT+TGG | + | chr4.3:2627522-2627541 | None:intergenic | 40.0% |
| ! | TATAACTGACTCCCCTAAGT+TGG | + | chr4.3:2626779-2626798 | None:intergenic | 40.0% |
| !! | ATCAATCGAAGGATTTGCTG+AGG | - | chr4.3:2627714-2627733 | MS.gene05958:CDS | 40.0% |
| !!! | GTTTTTTGAGATCGGAGAGT+TGG | + | chr4.3:2625439-2625458 | None:intergenic | 40.0% |
| AAATCCCCACATTGTGGGTT+TGG | + | chr4.3:2626687-2626706 | None:intergenic | 45.0% | |
| AACGCATCGAAACAGAACCT+AGG | + | chr4.3:2625559-2625578 | None:intergenic | 45.0% | |
| CAGAACCTAGGAGAAGAAAG+AGG | + | chr4.3:2625547-2625566 | None:intergenic | 45.0% | |
| CTGAAGGAGCTTTGCTCTAT+GGG | - | chr4.3:2626885-2626904 | MS.gene05958:intron | 45.0% | |
| CTGCGTGTGTTATCCAACTT+AGG | - | chr4.3:2626763-2626782 | MS.gene05958:intron | 45.0% | |
| CTTGGGGACCACGATAAATT+TGG | + | chr4.3:2626529-2626548 | None:intergenic | 45.0% | |
| CTTTCCCTCTTTCTTCTCCT+AGG | - | chr4.3:2625539-2625558 | MS.gene05958:CDS | 45.0% | |
| GAGAGTGGATAAACGATTGG+CGG | + | chr4.3:2625402-2625421 | None:intergenic | 45.0% | |
| GCGTGTGTTATCCAACTTAG+GGG | - | chr4.3:2626765-2626784 | MS.gene05958:intron | 45.0% | |
| GCTTTGCTCTATGGGTAGTT+AGG | - | chr4.3:2626893-2626912 | MS.gene05958:intron | 45.0% | |
| GTCATCTTTAGCCAATCTCC+GGG | - | chr4.3:2627508-2627527 | MS.gene05958:intron | 45.0% | |
| GTCGAGAGTGGATAAACGAT+TGG | + | chr4.3:2625405-2625424 | None:intergenic | 45.0% | |
| GTCTGAATAGAGAGCGAGAA+GGG | - | chr4.3:2626803-2626822 | MS.gene05958:intron | 45.0% | |
| TCTGAAGGAGCTTTGCTCTA+TGG | - | chr4.3:2626884-2626903 | MS.gene05958:intron | 45.0% | |
| TCTGAATAGAGAGCGAGAAG+GGG | - | chr4.3:2626804-2626823 | MS.gene05958:intron | 45.0% | |
| TTCGTTACATGGTGTGGCTA+GGG | - | chr4.3:2625721-2625740 | MS.gene05958:intron | 45.0% | |
| TTCTCTGCCCAAACCTTACA+AGG | + | chr4.3:2626856-2626875 | None:intergenic | 45.0% | |
| !! | CGTCGGTGATTAGGTTTTGA+CGG | + | chr4.3:2625469-2625488 | None:intergenic | 45.0% |
| !! | TAATTAGCACTGGCAGTGCT+TGG | + | chr4.3:2626498-2626517 | None:intergenic | 45.0% |
| !!! | TTTTTTTTTTTTTATTATTC+AGG | - | chr4.3:2625604-2625623 | MS.gene05958:intron | 5.0% |
| AACTACAACGGCCACAGATC+TGG | - | chr4.3:2625277-2625296 | MS.gene05958:CDS | 50.0% | |
| AAGTACCTCGAGAGAGGAGA+GGG | + | chr4.3:2625522-2625541 | None:intergenic | 50.0% | |
| ACCACCAAACCCACAATGTG+GGG | - | chr4.3:2626680-2626699 | MS.gene05958:intron | 50.0% | |
| ATTGGCGGTGAGGTCTAACT+CGG | + | chr4.3:2625387-2625406 | None:intergenic | 50.0% | |
| CTGAATAGAGAGCGAGAAGG+GGG | - | chr4.3:2626805-2626824 | MS.gene05958:intron | 50.0% | |
| CTTCGTTACATGGTGTGGCT+AGG | - | chr4.3:2625720-2625739 | MS.gene05958:intron | 50.0% | |
| GACCACCAAACCCACAATGT+GGG | - | chr4.3:2626679-2626698 | MS.gene05958:intron | 50.0% | |
| GAGATCGTGAAGCTGGTAAC+TGG | + | chr4.3:2625336-2625355 | None:intergenic | 50.0% | |
| GATGGAGAATTTGCAGACCC+TGG | - | chr4.3:2625953-2625972 | MS.gene05958:intron | 50.0% | |
| GGAAATGCTGATGTGGCACA+TGG | - | chr4.3:2626734-2626753 | MS.gene05958:intron | 50.0% | |
| GGTCTGAATAGAGAGCGAGA+AGG | - | chr4.3:2626802-2626821 | MS.gene05958:intron | 50.0% | |
| TATGTGCGTTGTTGTGACGC+TGG | - | chr4.3:2626951-2626970 | MS.gene05958:intron | 50.0% | |
| TGGATAAACGATTGGCGGTG+AGG | + | chr4.3:2625397-2625416 | None:intergenic | 50.0% | |
| ! | AAAGTACCTCGAGAGAGGAG+AGG | + | chr4.3:2625523-2625542 | None:intergenic | 50.0% |
| ! | AGGTCTAACTCGGTGAGGTT+AGG | + | chr4.3:2625377-2625396 | None:intergenic | 50.0% |
| ! | TCTAACTCGGTGAGGTTAGG+AGG | + | chr4.3:2625374-2625393 | None:intergenic | 50.0% |
| AGCGAGAAGGGGGATCATTG+CGG | - | chr4.3:2626815-2626834 | MS.gene05958:intron | 55.0% | |
| CCAGGAAGAGAGAGGAACGA+CGG | + | chr4.3:2625495-2625514 | None:intergenic | 55.0% | |
| CTGAGTCGAGATCGTGAAGC+TGG | + | chr4.3:2625343-2625362 | None:intergenic | 55.0% | |
| GCAGACCCTGGTGAATTTGC+AGG | - | chr4.3:2625965-2625984 | MS.gene05958:intron | 55.0% | |
| GGACCACCAAACCCACAATG+TGG | - | chr4.3:2626678-2626697 | MS.gene05958:intron | 55.0% | |
| TCCCCACATTGTGGGTTTGG+TGG | + | chr4.3:2626684-2626703 | None:intergenic | 55.0% | |
| TGCTGATGTGGCACATGGCA+AGG | - | chr4.3:2626739-2626758 | MS.gene05958:intron | 55.0% | |
| TTCGTCGTCGTCCAGATCTG+TGG | + | chr4.3:2625291-2625310 | None:intergenic | 55.0% | |
| ! | AGGGTGTTCCAGGAAGAGAG+AGG | + | chr4.3:2625503-2625522 | None:intergenic | 55.0% |
| !! | GAGGGAAAGTACCTCGAGAG+AGG | + | chr4.3:2625528-2625547 | None:intergenic | 55.0% |
| CCGTCGTTCCTCTCTCTTCC+TGG | - | chr4.3:2625492-2625511 | MS.gene05958:CDS | 60.0% | |
| GAACACCCTCTCCTCTCTCG+AGG | - | chr4.3:2625514-2625533 | MS.gene05958:CDS | 60.0% | |
| ! | CGGTGAGGTCTAACTCGGTG+AGG | + | chr4.3:2625382-2625401 | None:intergenic | 60.0% |
| !! | GAGAGAGGAGAGGGTGTTCC+AGG | + | chr4.3:2625513-2625532 | None:intergenic | 60.0% |
| !! | GGATTTGCTGAGGCTGTCGC+TGG | - | chr4.3:2627724-2627743 | MS.gene05958:CDS | 60.0% |
| CGGAGAGTTGGGCGATGCGA+GGG | + | chr4.3:2625427-2625446 | None:intergenic | 65.0% | |
| GAGAGGAACGACGGCAGCGT+CGG | + | chr4.3:2625486-2625505 | None:intergenic | 65.0% | |
| TCGGAGAGTTGGGCGATGCG+AGG | + | chr4.3:2625428-2625447 | None:intergenic | 65.0% | |
| !! | CGACGGCAGCGTCGGTGATT+AGG | + | chr4.3:2625478-2625497 | None:intergenic | 65.0% |
| GGCGATGCGAGGGTCGAGAG+TGG | + | chr4.3:2625417-2625436 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 2625260 | 2627792 | 2625260 | ID=MS.gene05958 |
| chr4.3 | mRNA | 2625260 | 2627792 | 2625260 | ID=MS.gene05958.t1;Parent=MS.gene05958 |
| chr4.3 | exon | 2627517 | 2627792 | 2627517 | ID=MS.gene05958.t1.exon1;Parent=MS.gene05958.t1 |
| chr4.3 | CDS | 2627517 | 2627792 | 2627517 | ID=cds.MS.gene05958.t1;Parent=MS.gene05958.t1 |
| chr4.3 | exon | 2627196 | 2627426 | 2627196 | ID=MS.gene05958.t1.exon2;Parent=MS.gene05958.t1 |
| chr4.3 | CDS | 2627196 | 2627426 | 2627196 | ID=cds.MS.gene05958.t1;Parent=MS.gene05958.t1 |
| chr4.3 | exon | 2626955 | 2627101 | 2626955 | ID=MS.gene05958.t1.exon3;Parent=MS.gene05958.t1 |
| chr4.3 | CDS | 2626955 | 2627101 | 2626955 | ID=cds.MS.gene05958.t1;Parent=MS.gene05958.t1 |
| chr4.3 | exon | 2625464 | 2625606 | 2625464 | ID=MS.gene05958.t1.exon4;Parent=MS.gene05958.t1 |
| chr4.3 | CDS | 2625464 | 2625606 | 2625464 | ID=cds.MS.gene05958.t1;Parent=MS.gene05958.t1 |
| chr4.3 | exon | 2625260 | 2625374 | 2625260 | ID=MS.gene05958.t1.exon5;Parent=MS.gene05958.t1 |
| chr4.3 | CDS | 2625260 | 2625374 | 2625260 | ID=cds.MS.gene05958.t1;Parent=MS.gene05958.t1 |
| Gene Sequence |
| Protein sequence |
