Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52670.t1 | XP_018459315.1 | 46.8 | 340 | 156 | 6 | 1 | 338 | 1 | 317 | 7.00E-66 | 261.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52670.t1 | A0A2N9I863 | 41.5 | 354 | 173 | 8 | 1 | 339 | 1 | 335 | 9.9e-62 | 246.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049378 | MS.gene52670 | 0.822429 | 2.38E-53 | -1.69E-46 |
MS.gene050227 | MS.gene52670 | 0.809735 | 1.63E-50 | -1.69E-46 |
MS.gene050228 | MS.gene52670 | 0.816225 | 6.17E-52 | -1.69E-46 |
MS.gene05468 | MS.gene52670 | 0.809152 | 2.18E-50 | -1.69E-46 |
MS.gene055701 | MS.gene52670 | 0.815325 | 9.80E-52 | -1.69E-46 |
MS.gene057026 | MS.gene52670 | 0.811668 | 6.24E-51 | -1.69E-46 |
MS.gene05761 | MS.gene52670 | 0.808059 | 3.73E-50 | -1.69E-46 |
MS.gene060520 | MS.gene52670 | 0.80633 | 8.67E-50 | -1.69E-46 |
MS.gene060572 | MS.gene52670 | 0.801673 | 8.06E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52670.t1 | MTR_7g062720 | 40.541 | 148 | 80 | 3 | 1 | 146 | 1 | 142 | 5.14e-31 | 115 |
MS.gene52670.t1 | MTR_4g037355 | 40.441 | 136 | 61 | 4 | 155 | 290 | 1 | 116 | 1.16e-21 | 89.7 |
MS.gene52670.t1 | MTR_5g061150 | 35.354 | 99 | 64 | 0 | 52 | 150 | 38 | 136 | 4.20e-18 | 80.1 |
MS.gene52670.t1 | MTR_4g112730 | 57.971 | 69 | 28 | 1 | 143 | 211 | 2 | 69 | 7.91e-18 | 78.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 61 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGATCAATGGAACAAATTA+AGG | 0.196151 | 7.2:-16065865 | MS.gene52670:CDS |
AGTCTTATTGCCCTCATTAA+TGG | 0.201947 | 7.2:-16065885 | MS.gene52670:CDS |
AAAGTTGTGGCGTTTATTTC+AGG | 0.203868 | 7.2:+16065569 | None:intergenic |
CAAAAGATCCCAAGATCTTA+TGG | 0.237847 | 7.2:-16065943 | MS.gene52670:CDS |
GATTCTTGAGGGAGAAGATT+TGG | 0.253340 | 7.2:-16066062 | MS.gene52670:CDS |
GACAAAATTAAGGCAAGATT+TGG | 0.257188 | 7.2:-16065920 | MS.gene52670:CDS |
CTCAATTAAGTTGTTGTTCC+AGG | 0.274617 | 7.2:+16066111 | None:intergenic |
CACGACCTCCACCACGAAAA+TGG | 0.277262 | 7.2:+16065453 | None:intergenic |
GATCTTATGGGACAAAATTA+AGG | 0.310971 | 7.2:-16065930 | MS.gene52670:CDS |
ATTTACTGAATACTCTGATT+TGG | 0.313227 | 7.2:-16065675 | MS.gene52670:CDS |
ATTCTTGAGGGAGAAGATTT+GGG | 0.333151 | 7.2:-16066061 | MS.gene52670:CDS |
AGACAGGTAGTGTCATTCTT+TGG | 0.342502 | 7.2:+16065197 | None:intergenic |
GGGAGATGTCCCAGAGGAAT+TGG | 0.345733 | 7.2:-16066041 | MS.gene52670:CDS |
GAAGAGGTTATATGAATTAC+AGG | 0.363099 | 7.2:-16065430 | MS.gene52670:CDS |
GATTTCTAGAGGGACCTTCC+TGG | 0.373636 | 7.2:+16065354 | None:intergenic |
CATAGCCACCACGTCCTCTT+TGG | 0.374275 | 7.2:+16065519 | None:intergenic |
CGTGGTGGCTATGCTCGTTT+TGG | 0.395091 | 7.2:-16065509 | MS.gene52670:CDS |
ACAAAATTAAGGCAAGATTT+GGG | 0.416566 | 7.2:-16065919 | MS.gene52670:CDS |
TATAACTGAAAAGGAAAAGT+TGG | 0.422757 | 7.2:-16065762 | MS.gene52670:CDS |
TGCCCTCATTAATGGATCAA+TGG | 0.432677 | 7.2:-16065877 | MS.gene52670:CDS |
CGTGGTGGAGGTCGTGGAAG+AGG | 0.449888 | 7.2:-16065446 | MS.gene52670:CDS |
TCCTGCATGCTTTAGCCCAA+TGG | 0.457473 | 7.2:+16065297 | None:intergenic |
AAAAGATCCCAAGATCTTAT+GGG | 0.458748 | 7.2:-16065942 | MS.gene52670:CDS |
AACCATCAGTTGCGTCCTAC+AGG | 0.459311 | 7.2:-16065605 | MS.gene52670:CDS |
TGGCAAAACTATAACTGAAA+AGG | 0.467052 | 7.2:-16065771 | MS.gene52670:CDS |
ATCTGTGGATGGAAAGGAAA+GGG | 0.491819 | 7.2:-16065243 | MS.gene52670:CDS |
ATCAAGCACCACATTGATGA+TGG | 0.492315 | 7.2:-16065989 | MS.gene52670:CDS |
TGTTATAGATGCGGAAAGAA+AGG | 0.495634 | 7.2:-16065320 | MS.gene52670:CDS |
CTGGCGACAACTACATAACC+TGG | 0.502097 | 7.2:-16066129 | MS.gene52670:CDS |
GTTCCATTGATCCATTAATG+AGG | 0.509644 | 7.2:+16065874 | None:intergenic |
ATGCGGAAAGAAAGGCCATT+GGG | 0.516896 | 7.2:-16065312 | MS.gene52670:CDS |
TTTGATTGGTCATATTTGAG+AGG | 0.522357 | 7.2:+16065407 | None:intergenic |
CAAAGAATCTGTGGATGGAA+AGG | 0.532926 | 7.2:-16065249 | MS.gene52670:CDS |
TTCCATTGATCCATTAATGA+GGG | 0.533283 | 7.2:+16065875 | None:intergenic |
CGTGGACGAGGTAGAAATCA+TGG | 0.535808 | 7.2:-16065482 | MS.gene52670:CDS |
GGACTCGATAAGATTCTTGA+GGG | 0.539399 | 7.2:-16066073 | MS.gene52670:CDS |
GCCATTGGGCTAAAGCATGC+AGG | 0.539769 | 7.2:-16065298 | MS.gene52670:CDS |
CCCTCTAGAAATCATGATGA+TGG | 0.541875 | 7.2:-16065344 | MS.gene52670:CDS |
TTCCTGTAGGACGCAACTGA+TGG | 0.562606 | 7.2:+16065603 | None:intergenic |
AAAATCAGCAGCCTCAAGAC+AGG | 0.562896 | 7.2:+16065181 | None:intergenic |
AATTGAGTATCTTGCATGTG+AGG | 0.565013 | 7.2:-16066095 | MS.gene52670:CDS |
ATTGAGTATCTTGCATGTGA+GGG | 0.575966 | 7.2:-16066094 | MS.gene52670:CDS |
TTTGGTTGCAGCCCTTCTAG+TGG | 0.582793 | 7.2:-16065657 | MS.gene52670:CDS |
GATGCGGAAAGAAAGGCCAT+TGG | 0.583841 | 7.2:-16065313 | MS.gene52670:CDS |
TTGTGCAATAATTTGATGCA+TGG | 0.588693 | 7.2:+16065805 | None:intergenic |
TAAAAGATACAAAGAATCTG+TGG | 0.594054 | 7.2:-16065258 | MS.gene52670:CDS |
AGATACAAAGAATCTGTGGA+TGG | 0.602731 | 7.2:-16065254 | MS.gene52670:CDS |
GGGACTCGATAAGATTCTTG+AGG | 0.606176 | 7.2:-16066074 | MS.gene52670:CDS |
ACGCCCTTGATTAAAAGTTG+TGG | 0.608515 | 7.2:+16065556 | None:intergenic |
GCAATATCACTTGAGATGCA+TGG | 0.608661 | 7.2:+16065720 | None:intergenic |
TATAATCGCCAAAGAGGACG+TGG | 0.608957 | 7.2:-16065527 | MS.gene52670:CDS |
ACCATCATCATGATTTCTAG+AGG | 0.616492 | 7.2:+16065343 | None:intergenic |
GGATACGACATTGTTCCTGT+AGG | 0.627452 | 7.2:+16065590 | None:intergenic |
GGTGGTTATAATCGCCAAAG+AGG | 0.642086 | 7.2:-16065533 | MS.gene52670:CDS |
CCATCATCATGATTTCTAGA+GGG | 0.647682 | 7.2:+16065344 | None:intergenic |
GAATGACACTACCTGTCTTG+AGG | 0.649563 | 7.2:-16065192 | MS.gene52670:CDS |
AATCTGTGGATGGAAAGGAA+AGG | 0.653361 | 7.2:-16065244 | MS.gene52670:CDS |
GATGATGGTTGTTATAGATG+CGG | 0.696569 | 7.2:-16065329 | MS.gene52670:CDS |
AATCGCCAAAGAGGACGTGG+TGG | 0.698905 | 7.2:-16065524 | MS.gene52670:CDS |
TTTGTAATCCATCATCAATG+TGG | 0.715751 | 7.2:+16065981 | None:intergenic |
AGATTTGGGAGATGTCCCAG+AGG | 0.741186 | 7.2:-16066047 | MS.gene52670:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTCAAAATTTTAAGCATAAC+TGG | - | chr7.2:16065175-16065194 | MS.gene52670:CDS | 20.0% |
! | ACAAAATTAAGGCAAGATTT+GGG | - | chr7.2:16065404-16065423 | MS.gene52670:CDS | 25.0% |
! | ATTTACTGAATACTCTGATT+TGG | - | chr7.2:16065648-16065667 | MS.gene52670:CDS | 25.0% |
! | CAATCAAACAAAAATCATCA+GGG | - | chr7.2:16065931-16065950 | MS.gene52670:CDS | 25.0% |
! | TAAAAGATACAAAGAATCTG+TGG | - | chr7.2:16066065-16066084 | MS.gene52670:CDS | 25.0% |
! | TATAACTGAAAAGGAAAAGT+TGG | - | chr7.2:16065561-16065580 | MS.gene52670:CDS | 25.0% |
!! | ATTGCACAATTAGAATTTTG+TGG | - | chr7.2:16065532-16065551 | MS.gene52670:CDS | 25.0% |
!! | TATCTTTTACATAGATACTC+TGG | + | chr7.2:16066054-16066073 | None:intergenic | 25.0% |
!!! | CAACAACAGTTTTATAATCT+TGG | + | chr7.2:16065486-16065505 | None:intergenic | 25.0% |
!!! | TGTTGAAGGAGATTTTAATA+TGG | - | chr7.2:16066164-16066183 | MS.gene52670:CDS | 25.0% |
AAAAGATCCCAAGATCTTAT+GGG | - | chr7.2:16065381-16065400 | MS.gene52670:CDS | 30.0% | |
AACAAAAATCATCAGGGTAA+AGG | - | chr7.2:16065937-16065956 | MS.gene52670:CDS | 30.0% | |
CCAATCAAACAAAAATCATC+AGG | - | chr7.2:16065930-16065949 | MS.gene52670:CDS | 30.0% | |
GAAGAGGTTATATGAATTAC+AGG | - | chr7.2:16065893-16065912 | MS.gene52670:CDS | 30.0% | |
GACAAAATTAAGGCAAGATT+TGG | - | chr7.2:16065403-16065422 | MS.gene52670:CDS | 30.0% | |
GATCTTATGGGACAAAATTA+AGG | - | chr7.2:16065393-16065412 | MS.gene52670:CDS | 30.0% | |
TGGATCAATGGAACAAATTA+AGG | - | chr7.2:16065458-16065477 | MS.gene52670:CDS | 30.0% | |
TGGCAAAACTATAACTGAAA+AGG | - | chr7.2:16065552-16065571 | MS.gene52670:CDS | 30.0% | |
TTCCATTGATCCATTAATGA+GGG | + | chr7.2:16065451-16065470 | None:intergenic | 30.0% | |
TTGTGCAATAATTTGATGCA+TGG | + | chr7.2:16065521-16065540 | None:intergenic | 30.0% | |
TTTGTAATCCATCATCAATG+TGG | + | chr7.2:16065345-16065364 | None:intergenic | 30.0% | |
! | AATTTTGTCCCATAAGATCT+TGG | + | chr7.2:16065392-16065411 | None:intergenic | 30.0% |
! | ATTTTGTCCCATAAGATCTT+GGG | + | chr7.2:16065391-16065410 | None:intergenic | 30.0% |
! | TTTGATTGGTCATATTTGAG+AGG | + | chr7.2:16065919-16065938 | None:intergenic | 30.0% |
!! | CCTGATGATTTTTGTTTGAT+TGG | + | chr7.2:16065933-16065952 | None:intergenic | 30.0% |
AAAGGTAAAAACATCCAGGA+AGG | - | chr7.2:16065955-16065974 | MS.gene52670:CDS | 35.0% | |
AAAGTTGTGGCGTTTATTTC+AGG | + | chr7.2:16065757-16065776 | None:intergenic | 35.0% | |
AATTGAGTATCTTGCATGTG+AGG | - | chr7.2:16065228-16065247 | MS.gene52670:CDS | 35.0% | |
AGATACAAAGAATCTGTGGA+TGG | - | chr7.2:16066069-16066088 | MS.gene52670:CDS | 35.0% | |
ATTCTTGAGGGAGAAGATTT+GGG | - | chr7.2:16065262-16065281 | MS.gene52670:CDS | 35.0% | |
ATTGAGTATCTTGCATGTGA+GGG | - | chr7.2:16065229-16065248 | MS.gene52670:CDS | 35.0% | |
CAAAAGATCCCAAGATCTTA+TGG | - | chr7.2:16065380-16065399 | MS.gene52670:CDS | 35.0% | |
GTTCCATTGATCCATTAATG+AGG | + | chr7.2:16065452-16065471 | None:intergenic | 35.0% | |
TGTTATAGATGCGGAAAGAA+AGG | - | chr7.2:16066003-16066022 | MS.gene52670:CDS | 35.0% | |
! | AACGCCACAACTTTTAATCA+AGG | - | chr7.2:16065763-16065782 | MS.gene52670:CDS | 35.0% |
! | ACCATCATCATGATTTCTAG+AGG | + | chr7.2:16065983-16066002 | None:intergenic | 35.0% |
! | ACGCCACAACTTTTAATCAA+GGG | - | chr7.2:16065764-16065783 | MS.gene52670:CDS | 35.0% |
! | ATTTTGTTCAGCCACTAGAA+GGG | + | chr7.2:16065680-16065699 | None:intergenic | 35.0% |
! | CCATCATCATGATTTCTAGA+GGG | + | chr7.2:16065982-16066001 | None:intergenic | 35.0% |
! | CTCAATTAAGTTGTTGTTCC+AGG | + | chr7.2:16065215-16065234 | None:intergenic | 35.0% |
! | GATGATGGTTGTTATAGATG+CGG | - | chr7.2:16065994-16066013 | MS.gene52670:CDS | 35.0% |
! | TATTTTGTTCAGCCACTAGA+AGG | + | chr7.2:16065681-16065700 | None:intergenic | 35.0% |
! | TTTTCTTTGCCAATTCCTCT+GGG | + | chr7.2:16065294-16065313 | None:intergenic | 35.0% |
! | TTTTTCTTTGCCAATTCCTC+TGG | + | chr7.2:16065295-16065314 | None:intergenic | 35.0% |
!! | AGTCTTATTGCCCTCATTAA+TGG | - | chr7.2:16065438-16065457 | MS.gene52670:CDS | 35.0% |
AATCTGTGGATGGAAAGGAA+AGG | - | chr7.2:16066079-16066098 | MS.gene52670:CDS | 40.0% | |
ACGCCCTTGATTAAAAGTTG+TGG | + | chr7.2:16065770-16065789 | None:intergenic | 40.0% | |
ATCAAGCACCACATTGATGA+TGG | - | chr7.2:16065334-16065353 | MS.gene52670:CDS | 40.0% | |
ATCTGTGGATGGAAAGGAAA+GGG | - | chr7.2:16066080-16066099 | MS.gene52670:CDS | 40.0% | |
CAAAGAATCTGTGGATGGAA+AGG | - | chr7.2:16066074-16066093 | MS.gene52670:CDS | 40.0% | |
GATTCTTGAGGGAGAAGATT+TGG | - | chr7.2:16065261-16065280 | MS.gene52670:CDS | 40.0% | |
GCAATATCACTTGAGATGCA+TGG | + | chr7.2:16065606-16065625 | None:intergenic | 40.0% | |
GGACTCGATAAGATTCTTGA+GGG | - | chr7.2:16065250-16065269 | MS.gene52670:CDS | 40.0% | |
GGGTAAAGGTAAAAACATCC+AGG | - | chr7.2:16065951-16065970 | MS.gene52670:CDS | 40.0% | |
! | ACAACTTTTAATCAAGGGCG+TGG | - | chr7.2:16065769-16065788 | MS.gene52670:CDS | 40.0% |
! | AGACAGGTAGTGTCATTCTT+TGG | + | chr7.2:16066129-16066148 | None:intergenic | 40.0% |
! | CCCTCTAGAAATCATGATGA+TGG | - | chr7.2:16065979-16065998 | MS.gene52670:CDS | 40.0% |
! | TGCCCTCATTAATGGATCAA+TGG | - | chr7.2:16065446-16065465 | MS.gene52670:CDS | 40.0% |
AAAATCAGCAGCCTCAAGAC+AGG | + | chr7.2:16066145-16066164 | None:intergenic | 45.0% | |
ATGCGGAAAGAAAGGCCATT+GGG | - | chr7.2:16066011-16066030 | MS.gene52670:CDS | 45.0% | |
GAATGACACTACCTGTCTTG+AGG | - | chr7.2:16066131-16066150 | MS.gene52670:CDS | 45.0% | |
GGATACGACATTGTTCCTGT+AGG | + | chr7.2:16065736-16065755 | None:intergenic | 45.0% | |
GGGACTCGATAAGATTCTTG+AGG | - | chr7.2:16065249-16065268 | MS.gene52670:CDS | 45.0% | |
GGTGGTTATAATCGCCAAAG+AGG | - | chr7.2:16065790-16065809 | MS.gene52670:CDS | 45.0% | |
TATAATCGCCAAAGAGGACG+TGG | - | chr7.2:16065796-16065815 | MS.gene52670:CDS | 45.0% | |
! | CATGGTCGAAACCATTTTCG+TGG | - | chr7.2:16065859-16065878 | MS.gene52670:CDS | 45.0% |
!! | ACTTTTAATCAAGGGCGTGG+TGG | - | chr7.2:16065772-16065791 | MS.gene52670:CDS | 45.0% |
!!! | GAGGCTGCTGATTTTGTTGA+AGG | - | chr7.2:16066150-16066169 | MS.gene52670:CDS | 45.0% |
AACCATCAGTTGCGTCCTAC+AGG | - | chr7.2:16065718-16065737 | MS.gene52670:CDS | 50.0% | |
AGATTTGGGAGATGTCCCAG+AGG | - | chr7.2:16065276-16065295 | MS.gene52670:CDS | 50.0% | |
CGTGGACGAGGTAGAAATCA+TGG | - | chr7.2:16065841-16065860 | MS.gene52670:CDS | 50.0% | |
CTGGCGACAACTACATAACC+TGG | - | chr7.2:16065194-16065213 | MS.gene52670:CDS | 50.0% | |
GATGCGGAAAGAAAGGCCAT+TGG | - | chr7.2:16066010-16066029 | MS.gene52670:CDS | 50.0% | |
TCCTGCATGCTTTAGCCCAA+TGG | + | chr7.2:16066029-16066048 | None:intergenic | 50.0% | |
TTCCTGTAGGACGCAACTGA+TGG | + | chr7.2:16065723-16065742 | None:intergenic | 50.0% | |
TTTGGTTGCAGCCCTTCTAG+TGG | - | chr7.2:16065666-16065685 | MS.gene52670:CDS | 50.0% | |
! | CGAAACCATTTTCGTGGTGG+AGG | - | chr7.2:16065865-16065884 | MS.gene52670:CDS | 50.0% |
! | GATTTCTAGAGGGACCTTCC+TGG | + | chr7.2:16065972-16065991 | None:intergenic | 50.0% |
! | GGTCGAAACCATTTTCGTGG+TGG | - | chr7.2:16065862-16065881 | MS.gene52670:CDS | 50.0% |
!! | TATGCTCGTTTTGGTGGTCG+TGG | - | chr7.2:16065823-16065842 | MS.gene52670:CDS | 50.0% |
AATCGCCAAAGAGGACGTGG+TGG | - | chr7.2:16065799-16065818 | MS.gene52670:CDS | 55.0% | |
CACGACCTCCACCACGAAAA+TGG | + | chr7.2:16065873-16065892 | None:intergenic | 55.0% | |
CATAGCCACCACGTCCTCTT+TGG | + | chr7.2:16065807-16065826 | None:intergenic | 55.0% | |
GCCATTGGGCTAAAGCATGC+AGG | - | chr7.2:16066025-16066044 | MS.gene52670:CDS | 55.0% | |
GGGAGATGTCCCAGAGGAAT+TGG | - | chr7.2:16065282-16065301 | MS.gene52670:CDS | 55.0% | |
! | CGTGGTGGCTATGCTCGTTT+TGG | - | chr7.2:16065814-16065833 | MS.gene52670:CDS | 55.0% |
! | GGTGGCTATGCTCGTTTTGG+TGG | - | chr7.2:16065817-16065836 | MS.gene52670:CDS | 55.0% |
!! | CATTTTCGTGGTGGAGGTCG+TGG | - | chr7.2:16065871-16065890 | MS.gene52670:CDS | 55.0% |
!! | CGTTTTGGTGGTCGTGGACG+AGG | - | chr7.2:16065829-16065848 | MS.gene52670:CDS | 60.0% |
! | CGTGGTGGAGGTCGTGGAAG+AGG | - | chr7.2:16065877-16065896 | MS.gene52670:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 16065154 | 16066191 | 16065154 | ID=MS.gene52670 |
chr7.2 | mRNA | 16065154 | 16066191 | 16065154 | ID=MS.gene52670.t1;Parent=MS.gene52670 |
chr7.2 | exon | 16065154 | 16066191 | 16065154 | ID=MS.gene52670.t1.exon1;Parent=MS.gene52670.t1 |
chr7.2 | CDS | 16065154 | 16066191 | 16065154 | ID=cds.MS.gene52670.t1;Parent=MS.gene52670.t1 |
Gene Sequence |
Protein sequence |