Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52798.t1 | XP_003603845.1 | 95.1 | 428 | 21 | 0 | 1 | 428 | 1 | 428 | 9.50E-238 | 832.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52798.t1 | P50134 | 57.1 | 415 | 177 | 1 | 10 | 424 | 18 | 431 | 5.2e-136 | 485.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52798.t1 | G7J5X8 | 95.1 | 428 | 21 | 0 | 1 | 428 | 1 | 428 | 6.8e-238 | 832.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055251 | MS.gene52798 | 0.810706 | 1.01E-50 | -1.69E-46 |
| MS.gene056694 | MS.gene52798 | 0.800756 | 1.24E-48 | -1.69E-46 |
| MS.gene060076 | MS.gene52798 | 0.801643 | 8.17E-49 | -1.69E-46 |
| MS.gene061044 | MS.gene52798 | 0.821582 | 3.74E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52798.t1 | MTR_3g114870 | 95.093 | 428 | 21 | 0 | 1 | 428 | 1 | 428 | 0.0 | 843 |
| MS.gene52798.t1 | MTR_3g114890 | 72.986 | 422 | 83 | 4 | 1 | 422 | 38 | 428 | 0.0 | 609 |
| MS.gene52798.t1 | MTR_5g022700 | 25.148 | 338 | 229 | 9 | 84 | 407 | 121 | 448 | 3.31e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52798.t1 | AT5G11880 | 25.581 | 344 | 220 | 9 | 84 | 407 | 127 | 454 | 2.84e-14 | 75.1 |
| MS.gene52798.t1 | AT3G14390 | 24.709 | 344 | 223 | 8 | 84 | 407 | 122 | 449 | 4.97e-14 | 74.3 |
Find 95 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTTAGCGTTCTTGATTTA+AGG | 0.113656 | 3.1:-90914532 | MS.gene52798:CDS |
| TGGGCTTCAAGTTGGTAATT+TGG | 0.149477 | 3.1:+90914669 | None:intergenic |
| TTGGCTTGTGTTTCCAAATA+TGG | 0.194285 | 3.1:-90913538 | MS.gene52798:CDS |
| GTTGTATAAGCACCCATATT+TGG | 0.221677 | 3.1:+90913525 | None:intergenic |
| AACTTCTTTGGCCAATAATA+TGG | 0.232030 | 3.1:+90914013 | None:intergenic |
| CGGAGGAGGAGCTCGCATTT+TGG | 0.257621 | 3.1:+90914209 | None:intergenic |
| GATGAGGATCTTGTTGTTAT+TGG | 0.264779 | 3.1:-90913858 | MS.gene52798:CDS |
| GTGCCTATAAGTGAAATATT+AGG | 0.265004 | 3.1:+90914434 | None:intergenic |
| AACCCTAATATTTCACTTAT+AGG | 0.265351 | 3.1:-90914437 | MS.gene52798:CDS |
| AAAATGAAAATTCTTGATAT+TGG | 0.275753 | 3.1:-90913960 | MS.gene52798:CDS |
| GGGCTTCAAGTTGGTAATTT+GGG | 0.276695 | 3.1:+90914670 | None:intergenic |
| GGTGCTTATACAACTTCTTC+TGG | 0.278580 | 3.1:-90913516 | MS.gene52798:CDS |
| TTACACTTAACGGCATAAAA+AGG | 0.284731 | 3.1:+90914458 | None:intergenic |
| GGAGCTAAACCCATTGAAAT+TGG | 0.285597 | 3.1:+90913491 | None:intergenic |
| ATTGGTGGTGGATTCACTTC+TGG | 0.295664 | 3.1:-90913942 | MS.gene52798:CDS |
| ACGTTAGCAACAAAAGTTAT+TGG | 0.304090 | 3.1:-90913801 | MS.gene52798:CDS |
| TGGATTGATGATGGAATTTA+CGG | 0.308997 | 3.1:-90913747 | MS.gene52798:CDS |
| CGTTAGCAACAAAAGTTATT+GGG | 0.309406 | 3.1:-90913800 | MS.gene52798:CDS |
| CTTAAATCAAGAACGCTAAA+TGG | 0.327499 | 3.1:+90914533 | None:intergenic |
| GTAGCTCGGGAACTTCATTT+AGG | 0.329117 | 3.1:+90914126 | None:intergenic |
| ACGACTGGCGCAGTCGAAAT+TGG | 0.333325 | 3.1:+90914394 | None:intergenic |
| TTACCACGGAGCCATATTAT+TGG | 0.335936 | 3.1:-90914024 | MS.gene52798:CDS |
| TCGTGTCTCGGTCTCAAATA+TGG | 0.352609 | 3.1:-90914155 | MS.gene52798:CDS |
| TTGTGATCCATTTGTTCATA+AGG | 0.365764 | 3.1:+90914498 | None:intergenic |
| CAATCGTTCACCTCAAGTTC+AGG | 0.366769 | 3.1:+90913558 | None:intergenic |
| TCTCTCCATGCAACATTCTC+AGG | 0.369816 | 3.1:+90913657 | None:intergenic |
| TGCTAAAACAGATTCAATTT+CGG | 0.376996 | 3.1:+90914370 | None:intergenic |
| TCTTCTGGAACCAATTTCAA+TGG | 0.383904 | 3.1:-90913501 | MS.gene52798:CDS |
| GAATGCAGCTTCATCAAATC+TGG | 0.392102 | 3.1:+90913917 | None:intergenic |
| TGCCTATAAGTGAAATATTA+GGG | 0.397312 | 3.1:+90914435 | None:intergenic |
| AGATTCAATTTCGGCACGAC+TGG | 0.397432 | 3.1:+90914379 | None:intergenic |
| ATTTAGCGTTCTTGATTTAA+GGG | 0.400399 | 3.1:-90914531 | MS.gene52798:CDS |
| AATATTAGGGTTACACTTAA+CGG | 0.401795 | 3.1:+90914448 | None:intergenic |
| AATTTGGGATTGAGATTCTT+CGG | 0.411334 | 3.1:+90914685 | None:intergenic |
| TGTTCAACTCCAACTCTTGT+CGG | 0.415484 | 3.1:-90913444 | MS.gene52798:CDS |
| CTTGTTGTTATTGGTGAACC+TGG | 0.430037 | 3.1:-90913849 | MS.gene52798:CDS |
| AAATGCATGCCACTTAGGTT+TGG | 0.433043 | 3.1:-90913687 | MS.gene52798:CDS |
| CTTCTGGAACCAATTTCAAT+GGG | 0.439459 | 3.1:-90913500 | MS.gene52798:CDS |
| TGGTCGTTACTTTGCGGAAA+CGG | 0.440992 | 3.1:-90913829 | MS.gene52798:CDS |
| CGCGCTCCACTGTCTTCCTC+CGG | 0.449143 | 3.1:+90914179 | None:intergenic |
| TGGCTTGTGTTTCCAAATAT+GGG | 0.454466 | 3.1:-90913537 | MS.gene52798:CDS |
| TGTCTTCCTCCGGTTTAATA+CGG | 0.456200 | 3.1:+90914189 | None:intergenic |
| AGTGGAGCGCGTTCGTGTCT+CGG | 0.462681 | 3.1:-90914167 | MS.gene52798:CDS |
| TGAACCTGGTCGTTACTTTG+CGG | 0.463370 | 3.1:-90913835 | MS.gene52798:CDS |
| TTTGAAACAGCTTCACAACT+TGG | 0.466293 | 3.1:-90913990 | MS.gene52798:CDS |
| TTGTCAAATGCATGCCACTT+AGG | 0.471188 | 3.1:-90913692 | MS.gene52798:CDS |
| CACTTGTGATTCAGTTGATA+CGG | 0.472833 | 3.1:-90913601 | MS.gene52798:CDS |
| AAAATTCTTGATATTGGTGG+TGG | 0.474122 | 3.1:-90913954 | MS.gene52798:CDS |
| CTCAAAGCTGCTGATGTGGC+TGG | 0.475343 | 3.1:-90914104 | MS.gene52798:CDS |
| GTGGCTGGACTTAAAGTAAC+CGG | 0.477454 | 3.1:-90914089 | MS.gene52798:CDS |
| TAATTGACCTTATGAACAAA+TGG | 0.478395 | 3.1:-90914505 | MS.gene52798:CDS |
| GTTCAACTCCAACTCTTGTC+GGG | 0.485449 | 3.1:-90913443 | MS.gene52798:CDS |
| GATTCTTCGGTTACTAGTGT+AGG | 0.490410 | 3.1:+90914698 | None:intergenic |
| GTTACAACTTTCGACTGTGT+TGG | 0.493514 | 3.1:-90914260 | MS.gene52798:CDS |
| TCCTAAAACTTATGCTTCAA+CGG | 0.496112 | 3.1:-90913634 | MS.gene52798:CDS |
| CGGCTCCTCCACTGCCTATG+TGG | 0.498519 | 3.1:+90914057 | None:intergenic |
| ATCAGCAGCTTTGAGTAGCT+CGG | 0.500239 | 3.1:+90914112 | None:intergenic |
| ATGTGTGACTCTGATTTACA+CGG | 0.500289 | 3.1:+90914311 | None:intergenic |
| GCTCCTCCTCCGTATTAAAC+CGG | 0.513408 | 3.1:-90914198 | MS.gene52798:CDS |
| ATGAAAATTCTTGATATTGG+TGG | 0.524512 | 3.1:-90913957 | MS.gene52798:CDS |
| GTTTCTTTCCACATAGGCAG+TGG | 0.526020 | 3.1:-90914065 | MS.gene52798:CDS |
| CTGAACTTGAGGTGAACGAT+TGG | 0.531047 | 3.1:-90913557 | MS.gene52798:CDS |
| GAGGTGAAATGAGAGAGTAT+TGG | 0.532786 | 3.1:-90913767 | MS.gene52798:CDS |
| TCAGCAGCTTTGAGTAGCTC+GGG | 0.534584 | 3.1:+90914113 | None:intergenic |
| AGTTAACGCCCGACAAGAGT+TGG | 0.541910 | 3.1:+90913435 | None:intergenic |
| AACATTTACACCAACACTTG+CGG | 0.545840 | 3.1:+90914280 | None:intergenic |
| AGAGAGTATTGGATTGATGA+TGG | 0.547610 | 3.1:-90913756 | MS.gene52798:CDS |
| TTGGCGTAAATGATTCTGTC+GGG | 0.548085 | 3.1:+90914335 | None:intergenic |
| GTTGGCGTAAATGATTCTGT+CGG | 0.557662 | 3.1:+90914334 | None:intergenic |
| CCTCCGGTTTAATACGGAGG+AGG | 0.565365 | 3.1:+90914195 | None:intergenic |
| TGACTCTGATTTACACGGGT+TGG | 0.567636 | 3.1:+90914316 | None:intergenic |
| ATGGATCACAAAACTTCCTA+CGG | 0.580901 | 3.1:-90914486 | MS.gene52798:CDS |
| GCTACTCAAAGCTGCTGATG+TGG | 0.584654 | 3.1:-90914108 | MS.gene52798:CDS |
| TCTTTCCACATAGGCAGTGG+AGG | 0.589805 | 3.1:-90914062 | MS.gene52798:CDS |
| GTATGAGTTACCTGAACTTG+AGG | 0.598744 | 3.1:-90913568 | MS.gene52798:CDS |
| GCCTATGTGGAAAGAAACGC+CGG | 0.604972 | 3.1:+90914070 | None:intergenic |
| AAGTCGAAAAGATCAAAAGA+TGG | 0.607083 | 3.1:-90914235 | MS.gene52798:CDS |
| ATAAAGTACGCCGCAAGTGT+TGG | 0.614012 | 3.1:-90914290 | MS.gene52798:CDS |
| AACACATTTCGGAAATGATG+AGG | 0.619194 | 3.1:-90913874 | MS.gene52798:CDS |
| CGTATCAACTGAATCACAAG+TGG | 0.619653 | 3.1:+90913602 | None:intergenic |
| CTTCCTCCGGTTTAATACGG+AGG | 0.619904 | 3.1:+90914192 | None:intergenic |
| GTTTCCGCAAAGTAACGACC+AGG | 0.632820 | 3.1:+90913831 | None:intergenic |
| GTTATTGGGAAACGTGTGAG+AGG | 0.635688 | 3.1:-90913786 | MS.gene52798:CDS |
| ACCGGCGTTTCTTTCCACAT+AGG | 0.637950 | 3.1:-90914071 | MS.gene52798:CDS |
| TGTGTGACTCTGATTTACAC+GGG | 0.640151 | 3.1:+90914312 | None:intergenic |
| CCTCCTCCGTATTAAACCGG+AGG | 0.647197 | 3.1:-90914195 | MS.gene52798:CDS |
| AGTGACAACTTTGTCCTCAG+AGG | 0.649939 | 3.1:-90914615 | MS.gene52798:CDS |
| CAAAACCTGAGAATGTTGCA+TGG | 0.652437 | 3.1:-90913662 | MS.gene52798:CDS |
| ATAGGCACACTAGCTTCACT+CGG | 0.663733 | 3.1:-90914419 | MS.gene52798:CDS |
| ATTAAACCGGAGGAAGACAG+TGG | 0.674532 | 3.1:-90914185 | MS.gene52798:CDS |
| GCCGACGCAAAAGCTTACCA+CGG | 0.696059 | 3.1:-90914038 | MS.gene52798:CDS |
| AATGTAAATATGCTTAGCTG+TGG | 0.700126 | 3.1:+90913470 | None:intergenic |
| ATCTGAGATAGTAACCTCTG+AGG | 0.725873 | 3.1:+90914601 | None:intergenic |
| TGGCCAATAATATGGCTCCG+TGG | 0.745513 | 3.1:+90914021 | None:intergenic |
| GTATCAACTGAATCACAAGT+GGG | 0.753190 | 3.1:+90913603 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATGAAAATTCTTGATAT+TGG | - | chr3.1:90914178-90914197 | MS.gene52798:CDS | 15.0% |
| !!! | ATATCAAGAATTTTCATTTT+TGG | + | chr3.1:90914178-90914197 | None:intergenic | 15.0% |
| ! | AACCCTAATATTTCACTTAT+AGG | - | chr3.1:90913701-90913720 | MS.gene52798:CDS | 25.0% |
| ! | AATATTAGGGTTACACTTAA+CGG | + | chr3.1:90913693-90913712 | None:intergenic | 25.0% |
| ! | ATGAAAATTCTTGATATTGG+TGG | - | chr3.1:90914181-90914200 | MS.gene52798:CDS | 25.0% |
| ! | ATTTAGCGTTCTTGATTTAA+GGG | - | chr3.1:90913607-90913626 | MS.gene52798:CDS | 25.0% |
| ! | GATGCAATAAAAACACATTT+CGG | - | chr3.1:90914253-90914272 | MS.gene52798:CDS | 25.0% |
| ! | TAATTGACCTTATGAACAAA+TGG | - | chr3.1:90913633-90913652 | MS.gene52798:CDS | 25.0% |
| ! | TGCCTATAAGTGAAATATTA+GGG | + | chr3.1:90913706-90913725 | None:intergenic | 25.0% |
| ! | TGCTAAAACAGATTCAATTT+CGG | + | chr3.1:90913771-90913790 | None:intergenic | 25.0% |
| AAAATTCTTGATATTGGTGG+TGG | - | chr3.1:90914184-90914203 | MS.gene52798:CDS | 30.0% | |
| AACTTCTTTGGCCAATAATA+TGG | + | chr3.1:90914128-90914147 | None:intergenic | 30.0% | |
| AAGTCGAAAAGATCAAAAGA+TGG | - | chr3.1:90913903-90913922 | MS.gene52798:CDS | 30.0% | |
| AATGTAAATATGCTTAGCTG+TGG | + | chr3.1:90914671-90914690 | None:intergenic | 30.0% | |
| ACGTTAGCAACAAAAGTTAT+TGG | - | chr3.1:90914337-90914356 | MS.gene52798:CDS | 30.0% | |
| CATTTAGCGTTCTTGATTTA+AGG | - | chr3.1:90913606-90913625 | MS.gene52798:CDS | 30.0% | |
| CGTTAGCAACAAAAGTTATT+GGG | - | chr3.1:90914338-90914357 | MS.gene52798:CDS | 30.0% | |
| CTTAAATCAAGAACGCTAAA+TGG | + | chr3.1:90913608-90913627 | None:intergenic | 30.0% | |
| GTGCCTATAAGTGAAATATT+AGG | + | chr3.1:90913707-90913726 | None:intergenic | 30.0% | |
| TCCTAAAACTTATGCTTCAA+CGG | - | chr3.1:90914504-90914523 | MS.gene52798:CDS | 30.0% | |
| TTACACTTAACGGCATAAAA+AGG | + | chr3.1:90913683-90913702 | None:intergenic | 30.0% | |
| TTGTGATCCATTTGTTCATA+AGG | + | chr3.1:90913643-90913662 | None:intergenic | 30.0% | |
| ! | AATTTGGGATTGAGATTCTT+CGG | + | chr3.1:90913456-90913475 | None:intergenic | 30.0% |
| ! | AGCTGTTTCAAAAACTTCTT+TGG | + | chr3.1:90914140-90914159 | None:intergenic | 30.0% |
| !! | TGGATTGATGATGGAATTTA+CGG | - | chr3.1:90914391-90914410 | MS.gene52798:CDS | 30.0% |
| !!! | AGCTGGTTTGGTTTTAATAA+TGG | + | chr3.1:90913573-90913592 | None:intergenic | 30.0% |
| !!! | ATTGAATCTGTTTTAGCACT+TGG | - | chr3.1:90913773-90913792 | MS.gene52798:CDS | 30.0% |
| AACACATTTCGGAAATGATG+AGG | - | chr3.1:90914264-90914283 | MS.gene52798:CDS | 35.0% | |
| AACATTTACACCAACACTTG+CGG | + | chr3.1:90913861-90913880 | None:intergenic | 35.0% | |
| ACTCCTGAAGCACAAAAAAT+GGG | + | chr3.1:90913491-90913510 | None:intergenic | 35.0% | |
| ATGGATCACAAAACTTCCTA+CGG | - | chr3.1:90913652-90913671 | MS.gene52798:CDS | 35.0% | |
| ATGTGTGACTCTGATTTACA+CGG | + | chr3.1:90913830-90913849 | None:intergenic | 35.0% | |
| GTATCAACTGAATCACAAGT+GGG | + | chr3.1:90914538-90914557 | None:intergenic | 35.0% | |
| GTTGTATAAGCACCCATATT+TGG | + | chr3.1:90914616-90914635 | None:intergenic | 35.0% | |
| ! | ACAAAAAATGGGCTTCAAGT+TGG | + | chr3.1:90913480-90913499 | None:intergenic | 35.0% |
| ! | ACCGTTGAAGCATAAGTTTT+AGG | + | chr3.1:90914508-90914527 | None:intergenic | 35.0% |
| ! | ACTTATGCTTCAACGGTTTT+TGG | - | chr3.1:90914511-90914530 | MS.gene52798:CDS | 35.0% |
| ! | CACTTGTGATTCAGTTGATA+CGG | - | chr3.1:90914537-90914556 | MS.gene52798:CDS | 35.0% |
| ! | TGGCTTGTGTTTCCAAATAT+GGG | - | chr3.1:90914601-90914620 | MS.gene52798:CDS | 35.0% |
| ! | TTTGAAACAGCTTCACAACT+TGG | - | chr3.1:90914148-90914167 | MS.gene52798:CDS | 35.0% |
| !! | AGAGAGTATTGGATTGATGA+TGG | - | chr3.1:90914382-90914401 | MS.gene52798:CDS | 35.0% |
| !! | CTTCTGGAACCAATTTCAAT+GGG | - | chr3.1:90914638-90914657 | MS.gene52798:CDS | 35.0% |
| !! | GATGAGGATCTTGTTGTTAT+TGG | - | chr3.1:90914280-90914299 | MS.gene52798:CDS | 35.0% |
| !! | TCTTCTGGAACCAATTTCAA+TGG | - | chr3.1:90914637-90914656 | MS.gene52798:CDS | 35.0% |
| !! | TTGGCTTGTGTTTCCAAATA+TGG | - | chr3.1:90914600-90914619 | MS.gene52798:CDS | 35.0% |
| CAAAACCTGAGAATGTTGCA+TGG | - | chr3.1:90914476-90914495 | MS.gene52798:CDS | 40.0% | |
| CACTCCTGAAGCACAAAAAA+TGG | + | chr3.1:90913492-90913511 | None:intergenic | 40.0% | |
| CGTATCAACTGAATCACAAG+TGG | + | chr3.1:90914539-90914558 | None:intergenic | 40.0% | |
| GAATGCAGCTTCATCAAATC+TGG | + | chr3.1:90914224-90914243 | None:intergenic | 40.0% | |
| GATTCTTCGGTTACTAGTGT+AGG | + | chr3.1:90913443-90913462 | None:intergenic | 40.0% | |
| GCATAAAAAGGCTTAACCGT+AGG | + | chr3.1:90913671-90913690 | None:intergenic | 40.0% | |
| GGAGCTAAACCCATTGAAAT+TGG | + | chr3.1:90914650-90914669 | None:intergenic | 40.0% | |
| GGTGCTTATACAACTTCTTC+TGG | - | chr3.1:90914622-90914641 | MS.gene52798:CDS | 40.0% | |
| GTATGAGTTACCTGAACTTG+AGG | - | chr3.1:90914570-90914589 | MS.gene52798:CDS | 40.0% | |
| GTTACAACTTTCGACTGTGT+TGG | - | chr3.1:90913878-90913897 | MS.gene52798:CDS | 40.0% | |
| GTTGGCGTAAATGATTCTGT+CGG | + | chr3.1:90913807-90913826 | None:intergenic | 40.0% | |
| TGTCTTCCTCCGGTTTAATA+CGG | + | chr3.1:90913952-90913971 | None:intergenic | 40.0% | |
| TGTGTGACTCTGATTTACAC+GGG | + | chr3.1:90913829-90913848 | None:intergenic | 40.0% | |
| TGTTCAACTCCAACTCTTGT+CGG | - | chr3.1:90914694-90914713 | MS.gene52798:CDS | 40.0% | |
| TTACCACGGAGCCATATTAT+TGG | - | chr3.1:90914114-90914133 | MS.gene52798:CDS | 40.0% | |
| TTGGCGTAAATGATTCTGTC+GGG | + | chr3.1:90913806-90913825 | None:intergenic | 40.0% | |
| ! | AAATGCATGCCACTTAGGTT+TGG | - | chr3.1:90914451-90914470 | MS.gene52798:CDS | 40.0% |
| ! | ATCTGAGATAGTAACCTCTG+AGG | + | chr3.1:90913540-90913559 | None:intergenic | 40.0% |
| ! | GAGGTGAAATGAGAGAGTAT+TGG | - | chr3.1:90914371-90914390 | MS.gene52798:CDS | 40.0% |
| ! | TTGTCAAATGCATGCCACTT+AGG | - | chr3.1:90914446-90914465 | MS.gene52798:CDS | 40.0% |
| ! | TTTTGTGCTTCAGGAGTGAA+AGG | - | chr3.1:90913494-90913513 | MS.gene52798:CDS | 40.0% |
| !! | AATGGTGAGTCATTTTCAGC+TGG | + | chr3.1:90913590-90913609 | None:intergenic | 40.0% |
| !! | CTTGTTGTTATTGGTGAACC+TGG | - | chr3.1:90914289-90914308 | MS.gene52798:CDS | 40.0% |
| !! | GGGCTTCAAGTTGGTAATTT+GGG | + | chr3.1:90913471-90913490 | None:intergenic | 40.0% |
| !! | TGAGTCATTTTCAGCTGGTT+TGG | + | chr3.1:90913585-90913604 | None:intergenic | 40.0% |
| !! | TGGGCTTCAAGTTGGTAATT+TGG | + | chr3.1:90913472-90913491 | None:intergenic | 40.0% |
| !!! | AAGCCCATTTTTTGTGCTTC+AGG | - | chr3.1:90913485-90913504 | MS.gene52798:CDS | 40.0% |
| !!! | GGTTTTGAACCAAACCTAAG+TGG | + | chr3.1:90914463-90914482 | None:intergenic | 40.0% |
| AGATTCAATTTCGGCACGAC+TGG | + | chr3.1:90913762-90913781 | None:intergenic | 45.0% | |
| AGTGACAACTTTGTCCTCAG+AGG | - | chr3.1:90913523-90913542 | MS.gene52798:CDS | 45.0% | |
| ATAAAGTACGCCGCAAGTGT+TGG | - | chr3.1:90913848-90913867 | MS.gene52798:CDS | 45.0% | |
| ATTAAACCGGAGGAAGACAG+TGG | - | chr3.1:90913953-90913972 | MS.gene52798:CDS | 45.0% | |
| CAATCGTTCACCTCAAGTTC+AGG | + | chr3.1:90914583-90914602 | None:intergenic | 45.0% | |
| CTGAACTTGAGGTGAACGAT+TGG | - | chr3.1:90914581-90914600 | MS.gene52798:CDS | 45.0% | |
| GTAGCTCGGGAACTTCATTT+AGG | + | chr3.1:90914015-90914034 | None:intergenic | 45.0% | |
| GTGGCTGGACTTAAAGTAAC+CGG | - | chr3.1:90914049-90914068 | MS.gene52798:CDS | 45.0% | |
| GTTATTGGGAAACGTGTGAG+AGG | - | chr3.1:90914352-90914371 | MS.gene52798:CDS | 45.0% | |
| GTTCAACTCCAACTCTTGTC+GGG | - | chr3.1:90914695-90914714 | MS.gene52798:CDS | 45.0% | |
| GTTTCTTTCCACATAGGCAG+TGG | - | chr3.1:90914073-90914092 | MS.gene52798:CDS | 45.0% | |
| TCGTGTCTCGGTCTCAAATA+TGG | - | chr3.1:90913983-90914002 | MS.gene52798:CDS | 45.0% | |
| TCTCTCCATGCAACATTCTC+AGG | + | chr3.1:90914484-90914503 | None:intergenic | 45.0% | |
| TGACTCTGATTTACACGGGT+TGG | + | chr3.1:90913825-90913844 | None:intergenic | 45.0% | |
| ! | ATAGGCACACTAGCTTCACT+CGG | - | chr3.1:90913719-90913738 | MS.gene52798:CDS | 45.0% |
| ! | TGAACCTGGTCGTTACTTTG+CGG | - | chr3.1:90914303-90914322 | MS.gene52798:CDS | 45.0% |
| ! | TGGTCGTTACTTTGCGGAAA+CGG | - | chr3.1:90914309-90914328 | MS.gene52798:CDS | 45.0% |
| !! | ATCAGCAGCTTTGAGTAGCT+CGG | + | chr3.1:90914029-90914048 | None:intergenic | 45.0% |
| !! | ATTGGTGGTGGATTCACTTC+TGG | - | chr3.1:90914196-90914215 | MS.gene52798:CDS | 45.0% |
| ACCGGCGTTTCTTTCCACAT+AGG | - | chr3.1:90914067-90914086 | MS.gene52798:CDS | 50.0% | |
| CTTCCTCCGGTTTAATACGG+AGG | + | chr3.1:90913949-90913968 | None:intergenic | 50.0% | |
| GCCTATGTGGAAAGAAACGC+CGG | + | chr3.1:90914071-90914090 | None:intergenic | 50.0% | |
| GCTACTCAAAGCTGCTGATG+TGG | - | chr3.1:90914030-90914049 | MS.gene52798:CDS | 50.0% | |
| GCTCCTCCTCCGTATTAAAC+CGG | - | chr3.1:90913940-90913959 | MS.gene52798:CDS | 50.0% | |
| GTTTCCGCAAAGTAACGACC+AGG | + | chr3.1:90914310-90914329 | None:intergenic | 50.0% | |
| TCTTTCCACATAGGCAGTGG+AGG | - | chr3.1:90914076-90914095 | MS.gene52798:CDS | 50.0% | |
| TGGCCAATAATATGGCTCCG+TGG | + | chr3.1:90914120-90914139 | None:intergenic | 50.0% | |
| ! | TCCGTGGTAAGCTTTTGCGT+CGG | + | chr3.1:90914104-90914123 | None:intergenic | 50.0% |
| !! | TCAGCAGCTTTGAGTAGCTC+GGG | + | chr3.1:90914028-90914047 | None:intergenic | 50.0% |
| ACGACTGGCGCAGTCGAAAT+TGG | + | chr3.1:90913747-90913766 | None:intergenic | 55.0% | |
| CCTCCGGTTTAATACGGAGG+AGG | + | chr3.1:90913946-90913965 | None:intergenic | 55.0% | |
| CCTCCTCCGTATTAAACCGG+AGG | - | chr3.1:90913943-90913962 | MS.gene52798:CDS | 55.0% | |
| CTCAAAGCTGCTGATGTGGC+TGG | - | chr3.1:90914034-90914053 | MS.gene52798:CDS | 55.0% | |
| GCCGACGCAAAAGCTTACCA+CGG | - | chr3.1:90914100-90914119 | MS.gene52798:CDS | 55.0% | |
| ! | GGAGGAGGAGCTCGCATTTT+GGG | + | chr3.1:90913931-90913950 | None:intergenic | 55.0% |
| AGTGGAGCGCGTTCGTGTCT+CGG | - | chr3.1:90913971-90913990 | MS.gene52798:CDS | 60.0% | |
| ! | CGGAGGAGGAGCTCGCATTT+TGG | + | chr3.1:90913932-90913951 | None:intergenic | 60.0% |
| CGCGCTCCACTGTCTTCCTC+CGG | + | chr3.1:90913962-90913981 | None:intergenic | 65.0% | |
| CGGCTCCTCCACTGCCTATG+TGG | + | chr3.1:90914084-90914103 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 90913437 | 90914723 | 90913437 | ID=MS.gene52798 |
| chr3.1 | mRNA | 90913437 | 90914723 | 90913437 | ID=MS.gene52798.t1;Parent=MS.gene52798 |
| chr3.1 | exon | 90913437 | 90914723 | 90913437 | ID=MS.gene52798.t1.exon1;Parent=MS.gene52798.t1 |
| chr3.1 | CDS | 90913437 | 90914723 | 90913437 | ID=cds.MS.gene52798.t1;Parent=MS.gene52798.t1 |
| Gene Sequence |
| Protein sequence |
