Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52804.t1 | XP_003603838.1 | 99.4 | 359 | 2 | 0 | 1 | 359 | 1 | 359 | 7.50E-212 | 746.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52804.t1 | Q39227 | 86.8 | 355 | 47 | 0 | 1 | 355 | 1 | 355 | 4.1e-190 | 665.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52804.t1 | G7J5X1 | 99.4 | 359 | 2 | 0 | 1 | 359 | 1 | 359 | 5.4e-212 | 746.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene92683 | MS.gene52804 | PPI |
| MS.gene77896 | MS.gene52804 | PPI |
| MS.gene91862 | MS.gene52804 | PPI |
| MS.gene52804 | MS.gene46629 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52804.t1 | MTR_3g114780 | 99.167 | 360 | 3 | 0 | 1 | 360 | 1 | 360 | 0.0 | 744 |
| MS.gene52804.t1 | MTR_3g032530 | 41.369 | 336 | 179 | 4 | 39 | 359 | 8 | 340 | 1.57e-87 | 268 |
| MS.gene52804.t1 | MTR_3g032530 | 43.144 | 299 | 154 | 3 | 74 | 359 | 2 | 297 | 2.24e-84 | 258 |
| MS.gene52804.t1 | MTR_1g014690 | 27.155 | 232 | 145 | 5 | 77 | 290 | 72 | 297 | 4.49e-15 | 75.9 |
| MS.gene52804.t1 | MTR_1g014690 | 28.743 | 167 | 115 | 2 | 127 | 290 | 77 | 242 | 3.56e-14 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52804.t1 | AT1G20330 | 86.761 | 355 | 47 | 0 | 1 | 355 | 1 | 355 | 0.0 | 665 |
| MS.gene52804.t1 | AT1G76090 | 81.742 | 356 | 65 | 0 | 1 | 356 | 1 | 356 | 0.0 | 643 |
| MS.gene52804.t1 | AT5G13710 | 40.729 | 329 | 183 | 2 | 39 | 355 | 8 | 336 | 5.81e-87 | 266 |
| MS.gene52804.t1 | AT5G13710 | 40.729 | 329 | 183 | 2 | 39 | 355 | 8 | 336 | 5.81e-87 | 266 |
| MS.gene52804.t1 | AT1G64970 | 23.607 | 305 | 204 | 7 | 66 | 354 | 56 | 347 | 1.47e-14 | 74.3 |
| MS.gene52804.t1 | AT1G73600 | 31.776 | 107 | 71 | 1 | 116 | 222 | 274 | 378 | 8.05e-11 | 63.5 |
| MS.gene52804.t1 | AT1G73600 | 31.776 | 107 | 71 | 1 | 116 | 222 | 288 | 392 | 9.75e-11 | 63.5 |
Find 95 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGCGGTTTCGATCTCTTT+TGG | 0.211288 | 3.1:+90851946 | None:intergenic |
| CGCGCCGTCGAAGCTGTTAT+TGG | 0.221898 | 3.1:+90851564 | None:intergenic |
| AAATGGGTCGGATTGCTTAT+TGG | 0.263397 | 3.1:-90851246 | MS.gene52804:CDS |
| GAAAGAGGTGATGCGCTTCC+TGG | 0.264267 | 3.1:-90851379 | MS.gene52804:CDS |
| CTCTTTACGTTTCATATGAA+TGG | 0.284632 | 3.1:-90851462 | MS.gene52804:CDS |
| ATGGTGGACCCGTTTGAAAA+TGG | 0.310972 | 3.1:-90851263 | MS.gene52804:CDS |
| TAAAATGTATCGACGAAATC+TGG | 0.322018 | 3.1:+90851916 | None:intergenic |
| CGATATTTACGAATGGGGTT+GGG | 0.323081 | 3.1:-90851881 | MS.gene52804:CDS |
| TGAACATCAACGGTTCCTTT+AGG | 0.334532 | 3.1:+90851178 | None:intergenic |
| AGCATCACGGTCAGATTTAC+CGG | 0.346006 | 3.1:+90851828 | None:intergenic |
| TAAGTTGAATTATCTTCTTT+TGG | 0.351483 | 3.1:+90851067 | None:intergenic |
| CATTCACGCGCTAACGTTGT+TGG | 0.362166 | 3.1:-90851697 | MS.gene52804:CDS |
| TACTGGTTCGTTTGCGTCCT+CGG | 0.367782 | 3.1:-90852075 | MS.gene52804:CDS |
| GTAACGGTTCTGTCTGCTTT+GGG | 0.376596 | 3.1:-90851208 | MS.gene52804:CDS |
| GATCTACGGCCATTTCTTCA+TGG | 0.377423 | 3.1:+90851797 | None:intergenic |
| GGTTGGGTTTGAGGTTGTTA+AGG | 0.385526 | 3.1:-90851317 | MS.gene52804:CDS |
| TCCTCGCCGGCGGTCTCTAC+TGG | 0.391323 | 3.1:-90852092 | MS.gene52804:CDS |
| GGTTGTTAAGGAACGGGATC+TGG | 0.398392 | 3.1:-90851305 | MS.gene52804:CDS |
| GGTAACGGTTCTGTCTGCTT+TGG | 0.405488 | 3.1:-90851209 | MS.gene52804:CDS |
| GGCTAAGAAGGTTGGGTTTG+AGG | 0.408359 | 3.1:-90851326 | MS.gene52804:CDS |
| ACAGAACCGTTACCACAATA+TGG | 0.417640 | 3.1:+90851218 | None:intergenic |
| CCAACCCCATTCGTAAATAT+CGG | 0.433176 | 3.1:+90851882 | None:intergenic |
| GATCTAATCGAGGTTAAATC+TGG | 0.437762 | 3.1:-90851778 | MS.gene52804:CDS |
| CGTTACCGATATTTACGAAT+GGG | 0.442701 | 3.1:-90851887 | MS.gene52804:CDS |
| CCGATATTTACGAATGGGGT+TGG | 0.443208 | 3.1:-90851882 | MS.gene52804:CDS |
| TCTTTACGTTTCATATGAAT+GGG | 0.443318 | 3.1:-90851461 | MS.gene52804:CDS |
| GTTTGAGGTTGTTAAGGAAC+GGG | 0.444084 | 3.1:-90851311 | MS.gene52804:CDS |
| TGGTGGACCCGTTTGAAAAT+GGG | 0.448669 | 3.1:-90851262 | MS.gene52804:CDS |
| GAACATGTTGAGATTATTCA+AGG | 0.452409 | 3.1:-90851406 | MS.gene52804:CDS |
| GATATTTACGAATGGGGTTG+GGG | 0.457811 | 3.1:-90851880 | MS.gene52804:CDS |
| GCGCCGTCGAAGCTGTTATT+GGG | 0.458017 | 3.1:+90851565 | None:intergenic |
| CTCCGGTGCAGAAGAGAGAA+AGG | 0.458720 | 3.1:+90852118 | None:intergenic |
| CTGAAGCGGCTAAGAAGGTT+GGG | 0.459708 | 3.1:-90851333 | MS.gene52804:CDS |
| GCGTAAACTTCTTCAAGATT+AGG | 0.459835 | 3.1:+90851514 | None:intergenic |
| AGTATTTATCGTAACTGTCT+TGG | 0.460133 | 3.1:+90851986 | None:intergenic |
| CGGCCATTTCTTCATGGAGG+CGG | 0.460343 | 3.1:+90851803 | None:intergenic |
| TACCCGCCTCCATGAAGAAA+TGG | 0.461620 | 3.1:-90851806 | MS.gene52804:CDS |
| ACCGCCGGCGAGGAGGGCTC+CGG | 0.486822 | 3.1:+90852101 | None:intergenic |
| CTCGATGTAGGTTGCGGTGT+TGG | 0.487116 | 3.1:-90851745 | MS.gene52804:CDS |
| CTCAGCCACCGTCTCATCCA+TGG | 0.489785 | 3.1:-90851282 | MS.gene52804:CDS |
| AAACGCGCCACCGATCTATC+CGG | 0.493820 | 3.1:-90852033 | MS.gene52804:CDS |
| ATTATTCAAGGTATTGAAAG+AGG | 0.496602 | 3.1:-90851394 | MS.gene52804:CDS |
| ACCCTTTCTCTCTTCTGCAC+CGG | 0.497665 | 3.1:-90852120 | MS.gene52804:CDS |
| GGCCATTTCTTCATGGAGGC+GGG | 0.499788 | 3.1:+90851804 | None:intergenic |
| AAAGAGGTGATGCGCTTCCT+GGG | 0.500216 | 3.1:-90851378 | MS.gene52804:CDS |
| TCTCTATGCGATGTTGTTTG+TGG | 0.500320 | 3.1:-90851610 | MS.gene52804:CDS |
| CTCGGCCCTGCCGAACGAAA+AGG | 0.505038 | 3.1:-90852057 | MS.gene52804:CDS |
| GCTGAAGCGGCTAAGAAGGT+TGG | 0.506568 | 3.1:-90851334 | MS.gene52804:CDS |
| ATGAGACGCGATAGCTCTCA+TGG | 0.507512 | 3.1:+90851717 | None:intergenic |
| GATGTAGGTTGCGGTGTTGG+TGG | 0.513870 | 3.1:-90851742 | MS.gene52804:CDS |
| TATAGCTGAAGCGGCTAAGA+AGG | 0.514512 | 3.1:-90851338 | MS.gene52804:CDS |
| GGTGATAAAATTCTCGATGT+AGG | 0.518771 | 3.1:-90851757 | MS.gene52804:CDS |
| TTTAACCTCGATTAGATCTA+CGG | 0.521898 | 3.1:+90851783 | None:intergenic |
| AAGACAGTTACGATAAATAC+TGG | 0.522518 | 3.1:-90851984 | MS.gene52804:CDS |
| TTCAGCGGAAATTGAACCGC+CGG | 0.527269 | 3.1:+90852014 | None:intergenic |
| GCTTTGGGAATTGCACCTAA+AGG | 0.533645 | 3.1:-90851193 | MS.gene52804:CDS |
| ATGTAGGTTGCGGTGTTGGT+GGG | 0.535396 | 3.1:-90851741 | MS.gene52804:CDS |
| TCGAAGCTGTTATTGGGAAA+CGG | 0.537800 | 3.1:+90851571 | None:intergenic |
| GGTTTGAGGTTGTTAAGGAA+CGG | 0.540682 | 3.1:-90851312 | MS.gene52804:CDS |
| TCAGCGTAGGTTCTAAGCCC+AGG | 0.541956 | 3.1:+90851361 | None:intergenic |
| TCAGATTTACCGGGAATAGC+GGG | 0.543231 | 3.1:+90851838 | None:intergenic |
| GTAGAGACCGCCGGCGAGGA+GGG | 0.547296 | 3.1:+90852095 | None:intergenic |
| CTGCAGAGAATCATGTGCAT+AGG | 0.550727 | 3.1:+90851094 | None:intergenic |
| CTACGCTGATATAGCTGAAG+CGG | 0.552632 | 3.1:-90851347 | MS.gene52804:CDS |
| AATTGAACCGCCGGATAGAT+CGG | 0.553673 | 3.1:+90852023 | None:intergenic |
| ACCGGAGCCCTCCTCGCCGG+CGG | 0.554746 | 3.1:-90852102 | MS.gene52804:CDS |
| GTCAGATTTACCGGGAATAG+CGG | 0.555781 | 3.1:+90851837 | None:intergenic |
| GCGTAACCATATTGTGGTAA+CGG | 0.558003 | 3.1:-90851224 | MS.gene52804:CDS |
| TGCACCGGAGCCCTCCTCGC+CGG | 0.559092 | 3.1:-90852105 | MS.gene52804:CDS |
| AAAATTCTCGATGTAGGTTG+CGG | 0.567893 | 3.1:-90851751 | MS.gene52804:CDS |
| AAGATTAGGCGCGTGGCACG+TGG | 0.572185 | 3.1:+90851528 | None:intergenic |
| TCGTTACCGATATTTACGAA+TGG | 0.576012 | 3.1:-90851888 | MS.gene52804:CDS |
| CGGGTCCACCATGGATGAGA+CGG | 0.590737 | 3.1:+90851274 | None:intergenic |
| TTTCCCAATAACAGCTTCGA+CGG | 0.594298 | 3.1:-90851568 | MS.gene52804:CDS |
| TTATTGGCGTAACCATATTG+TGG | 0.596355 | 3.1:-90851230 | MS.gene52804:CDS |
| CGCTTCAGCTATATCAGCGT+AGG | 0.600324 | 3.1:+90851348 | None:intergenic |
| TATGAAACGTAAAGAGCACC+AGG | 0.603847 | 3.1:+90851469 | None:intergenic |
| GTTACCGATATTTACGAATG+GGG | 0.610865 | 3.1:-90851886 | MS.gene52804:CDS |
| AACGAACCAGTAGAGACCGC+CGG | 0.612867 | 3.1:+90852086 | None:intergenic |
| AGTAGAGACCGCCGGCGAGG+AGG | 0.613500 | 3.1:+90852094 | None:intergenic |
| CTTCTTCAAGATTAGGCGCG+TGG | 0.615214 | 3.1:+90851521 | None:intergenic |
| CATGGAGGCGGGTAGCATCA+CGG | 0.620837 | 3.1:+90851815 | None:intergenic |
| TCCGGTGCAGAAGAGAGAAA+GGG | 0.624782 | 3.1:+90852119 | None:intergenic |
| GGACCCGTTTGAAAATGGGT+CGG | 0.636433 | 3.1:-90851258 | MS.gene52804:CDS |
| ACCAGTAGAGACCGCCGGCG+AGG | 0.640194 | 3.1:+90852091 | None:intergenic |
| CAGCATCTCATGAACATCAA+CGG | 0.644005 | 3.1:+90851168 | None:intergenic |
| GCATCACGGTCAGATTTACC+GGG | 0.652128 | 3.1:+90851829 | None:intergenic |
| CGCGCCACCGATCTATCCGG+CGG | 0.666165 | 3.1:-90852030 | MS.gene52804:CDS |
| AGCCACCGTCTCATCCATGG+TGG | 0.669559 | 3.1:-90851279 | MS.gene52804:CDS |
| TGAGACGCGATAGCTCTCAT+GGG | 0.676213 | 3.1:+90851718 | None:intergenic |
| GTCCACCATGGATGAGACGG+TGG | 0.682031 | 3.1:+90851277 | None:intergenic |
| CTACGGCCATTTCTTCATGG+AGG | 0.696293 | 3.1:+90851800 | None:intergenic |
| TGAACCGCCGGATAGATCGG+TGG | 0.706847 | 3.1:+90852026 | None:intergenic |
| GAAATCTGGAACTTTCTCAG+CGG | 0.713889 | 3.1:+90851930 | None:intergenic |
| AATGGCCGTAGATCTAATCG+AGG | 0.723393 | 3.1:-90851788 | MS.gene52804:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAGTTGAATTATCTTCTTT+TGG | + | chr3.1:90852128-90852147 | None:intergenic | 20.0% |
| ! | AAATTACACAACAAAAAAGC+TGG | - | chr3.1:90851552-90851571 | MS.gene52804:CDS | 25.0% |
| ! | TCTTTACGTTTCATATGAAT+GGG | - | chr3.1:90851731-90851750 | MS.gene52804:CDS | 25.0% |
| !! | AAGTTTACGCTGAAATTTTT+AGG | - | chr3.1:90851691-90851710 | MS.gene52804:CDS | 25.0% |
| !! | AGTTTACGCTGAAATTTTTA+GGG | - | chr3.1:90851692-90851711 | MS.gene52804:CDS | 25.0% |
| !!! | ATTATTCAAGGTATTGAAAG+AGG | - | chr3.1:90851798-90851817 | MS.gene52804:CDS | 25.0% |
| AAGACAGTTACGATAAATAC+TGG | - | chr3.1:90851208-90851227 | MS.gene52804:CDS | 30.0% | |
| AGTATTTATCGTAACTGTCT+TGG | + | chr3.1:90851209-90851228 | None:intergenic | 30.0% | |
| CTCTTTACGTTTCATATGAA+TGG | - | chr3.1:90851730-90851749 | MS.gene52804:CDS | 30.0% | |
| GAACATGTTGAGATTATTCA+AGG | - | chr3.1:90851786-90851805 | MS.gene52804:CDS | 30.0% | |
| TTTAACCTCGATTAGATCTA+CGG | + | chr3.1:90851412-90851431 | None:intergenic | 30.0% | |
| ! | TAAAATGTATCGACGAAATC+TGG | + | chr3.1:90851279-90851298 | None:intergenic | 30.0% |
| !!! | ATTTTTAGGGTTTTGAAACC+TGG | - | chr3.1:90851705-90851724 | MS.gene52804:CDS | 30.0% |
| AAAATTCTCGATGTAGGTTG+CGG | - | chr3.1:90851441-90851460 | MS.gene52804:CDS | 35.0% | |
| CGTTACCGATATTTACGAAT+GGG | - | chr3.1:90851305-90851324 | MS.gene52804:CDS | 35.0% | |
| GATCTAATCGAGGTTAAATC+TGG | - | chr3.1:90851414-90851433 | MS.gene52804:CDS | 35.0% | |
| GCGTAAACTTCTTCAAGATT+AGG | + | chr3.1:90851681-90851700 | None:intergenic | 35.0% | |
| GGTGATAAAATTCTCGATGT+AGG | - | chr3.1:90851435-90851454 | MS.gene52804:CDS | 35.0% | |
| GTTACCGATATTTACGAATG+GGG | - | chr3.1:90851306-90851325 | MS.gene52804:CDS | 35.0% | |
| TCGTTACCGATATTTACGAA+TGG | - | chr3.1:90851304-90851323 | MS.gene52804:CDS | 35.0% | |
| TTATTGGCGTAACCATATTG+TGG | - | chr3.1:90851962-90851981 | MS.gene52804:CDS | 35.0% | |
| AAATGGGTCGGATTGCTTAT+TGG | - | chr3.1:90851946-90851965 | MS.gene52804:CDS | 40.0% | |
| ACAGAACCGTTACCACAATA+TGG | + | chr3.1:90851977-90851996 | None:intergenic | 40.0% | |
| CAGCATCTCATGAACATCAA+CGG | + | chr3.1:90852027-90852046 | None:intergenic | 40.0% | |
| CCAACCCCATTCGTAAATAT+CGG | + | chr3.1:90851313-90851332 | None:intergenic | 40.0% | |
| CGATATTTACGAATGGGGTT+GGG | - | chr3.1:90851311-90851330 | MS.gene52804:CDS | 40.0% | |
| GATATTTACGAATGGGGTTG+GGG | - | chr3.1:90851312-90851331 | MS.gene52804:CDS | 40.0% | |
| GCGTAACCATATTGTGGTAA+CGG | - | chr3.1:90851968-90851987 | MS.gene52804:CDS | 40.0% | |
| TCGAAGCTGTTATTGGGAAA+CGG | + | chr3.1:90851624-90851643 | None:intergenic | 40.0% | |
| TGAACATCAACGGTTCCTTT+AGG | + | chr3.1:90852017-90852036 | None:intergenic | 40.0% | |
| TTTCCCAATAACAGCTTCGA+CGG | - | chr3.1:90851624-90851643 | MS.gene52804:CDS | 40.0% | |
| ! | AATCCGACCCATTTTCAAAC+GGG | + | chr3.1:90851940-90851959 | None:intergenic | 40.0% |
| ! | CAATCCGACCCATTTTCAAA+CGG | + | chr3.1:90851941-90851960 | None:intergenic | 40.0% |
| ! | GAAATCTGGAACTTTCTCAG+CGG | + | chr3.1:90851265-90851284 | None:intergenic | 40.0% |
| ! | GGTTTGAGGTTGTTAAGGAA+CGG | - | chr3.1:90851880-90851899 | MS.gene52804:CDS | 40.0% |
| ! | GTTTGAGGTTGTTAAGGAAC+GGG | - | chr3.1:90851881-90851900 | MS.gene52804:CDS | 40.0% |
| ! | TCTCTATGCGATGTTGTTTG+TGG | - | chr3.1:90851582-90851601 | MS.gene52804:CDS | 40.0% |
| !! | AATAGCGGGTGAAAAATGGA+AGG | + | chr3.1:90851343-90851362 | None:intergenic | 40.0% |
| !! | TATGAAACGTAAAGAGCACC+AGG | + | chr3.1:90851726-90851745 | None:intergenic | 40.0% |
| !!! | ACTGCTGACTTTTTGACAAG+AGG | - | chr3.1:90852053-90852072 | MS.gene52804:CDS | 40.0% |
| !!! | ACTGTCTTGGACTTTTTCAG+CGG | + | chr3.1:90851196-90851215 | None:intergenic | 40.0% |
| !!! | CTGCTGACTTTTTGACAAGA+GGG | - | chr3.1:90852054-90852073 | MS.gene52804:CDS | 40.0% |
| !!! | TGCTGACTTTTTGACAAGAG+GGG | - | chr3.1:90852055-90852074 | MS.gene52804:CDS | 40.0% |
| AATGGCCGTAGATCTAATCG+AGG | - | chr3.1:90851404-90851423 | MS.gene52804:CDS | 45.0% | |
| AATTGAACCGCCGGATAGAT+CGG | + | chr3.1:90851172-90851191 | None:intergenic | 45.0% | |
| AGCATCACGGTCAGATTTAC+CGG | + | chr3.1:90851367-90851386 | None:intergenic | 45.0% | |
| CCGATATTTACGAATGGGGT+TGG | - | chr3.1:90851310-90851329 | MS.gene52804:CDS | 45.0% | |
| CTACGCTGATATAGCTGAAG+CGG | - | chr3.1:90851845-90851864 | MS.gene52804:CDS | 45.0% | |
| CTGCAGAGAATCATGTGCAT+AGG | + | chr3.1:90852101-90852120 | None:intergenic | 45.0% | |
| GATCTACGGCCATTTCTTCA+TGG | + | chr3.1:90851398-90851417 | None:intergenic | 45.0% | |
| GTAACGGTTCTGTCTGCTTT+GGG | - | chr3.1:90851984-90852003 | MS.gene52804:CDS | 45.0% | |
| GTCAGATTTACCGGGAATAG+CGG | + | chr3.1:90851358-90851377 | None:intergenic | 45.0% | |
| TATAGCTGAAGCGGCTAAGA+AGG | - | chr3.1:90851854-90851873 | MS.gene52804:CDS | 45.0% | |
| TCAGATTTACCGGGAATAGC+GGG | + | chr3.1:90851357-90851376 | None:intergenic | 45.0% | |
| ! | ATTTTCAAACGGGTCCACCA+TGG | + | chr3.1:90851930-90851949 | None:intergenic | 45.0% |
| ! | CAGCGGTTTCGATCTCTTTT+GGG | + | chr3.1:90851248-90851267 | None:intergenic | 45.0% |
| ! | CATTTTTCACCCGCTATTCC+CGG | - | chr3.1:90851345-90851364 | MS.gene52804:CDS | 45.0% |
| ! | GGTTGGGTTTGAGGTTGTTA+AGG | - | chr3.1:90851875-90851894 | MS.gene52804:CDS | 45.0% |
| ! | TCAGCGGTTTCGATCTCTTT+TGG | + | chr3.1:90851249-90851268 | None:intergenic | 45.0% |
| ! | TGGTGGACCCGTTTGAAAAT+GGG | - | chr3.1:90851930-90851949 | MS.gene52804:CDS | 45.0% |
| !! | ATGGTGGACCCGTTTGAAAA+TGG | - | chr3.1:90851929-90851948 | MS.gene52804:CDS | 45.0% |
| !! | GCTGACTTTTTGACAAGAGG+GGG | - | chr3.1:90852056-90852075 | MS.gene52804:CDS | 45.0% |
| !! | GCTTTGGGAATTGCACCTAA+AGG | - | chr3.1:90851999-90852018 | MS.gene52804:CDS | 45.0% |
| AAAGAGGTGATGCGCTTCCT+GGG | - | chr3.1:90851814-90851833 | MS.gene52804:CDS | 50.0% | |
| ACCCTTTCTCTCTTCTGCAC+CGG | - | chr3.1:90851072-90851091 | MS.gene52804:CDS | 50.0% | |
| ATGAGACGCGATAGCTCTCA+TGG | + | chr3.1:90851478-90851497 | None:intergenic | 50.0% | |
| CATTCACGCGCTAACGTTGT+TGG | - | chr3.1:90851495-90851514 | MS.gene52804:CDS | 50.0% | |
| CGCTTCAGCTATATCAGCGT+AGG | + | chr3.1:90851847-90851866 | None:intergenic | 50.0% | |
| CTACGGCCATTTCTTCATGG+AGG | + | chr3.1:90851395-90851414 | None:intergenic | 50.0% | |
| CTGAAGCGGCTAAGAAGGTT+GGG | - | chr3.1:90851859-90851878 | MS.gene52804:CDS | 50.0% | |
| CTTCTTCAAGATTAGGCGCG+TGG | + | chr3.1:90851674-90851693 | None:intergenic | 50.0% | |
| GCATCACGGTCAGATTTACC+GGG | + | chr3.1:90851366-90851385 | None:intergenic | 50.0% | |
| GGACCCGTTTGAAAATGGGT+CGG | - | chr3.1:90851934-90851953 | MS.gene52804:CDS | 50.0% | |
| GGCTAAGAAGGTTGGGTTTG+AGG | - | chr3.1:90851866-90851885 | MS.gene52804:CDS | 50.0% | |
| GGTTGTTAAGGAACGGGATC+TGG | - | chr3.1:90851887-90851906 | MS.gene52804:CDS | 50.0% | |
| TACCCGCCTCCATGAAGAAA+TGG | - | chr3.1:90851386-90851405 | MS.gene52804:CDS | 50.0% | |
| TCCGGTGCAGAAGAGAGAAA+GGG | + | chr3.1:90851076-90851095 | None:intergenic | 50.0% | |
| TGAGACGCGATAGCTCTCAT+GGG | + | chr3.1:90851477-90851496 | None:intergenic | 50.0% | |
| TTCAGCGGAAATTGAACCGC+CGG | + | chr3.1:90851181-90851200 | None:intergenic | 50.0% | |
| TTGACAAGAGGGGGTGATAC+TGG | - | chr3.1:90852065-90852084 | MS.gene52804:CDS | 50.0% | |
| ! | CGGTTTCGATCTCTTTTGGG+CGG | + | chr3.1:90851245-90851264 | None:intergenic | 50.0% |
| ! | GGTAACGGTTCTGTCTGCTT+TGG | - | chr3.1:90851983-90852002 | MS.gene52804:CDS | 50.0% |
| ! | GTTTGCCTTTTCGTTCGGCA+GGG | + | chr3.1:90851143-90851162 | None:intergenic | 50.0% |
| ! | TTTCGATCTCTTTTGGGCGG+CGG | + | chr3.1:90851242-90851261 | None:intergenic | 50.0% |
| !! | ATGTAGGTTGCGGTGTTGGT+GGG | - | chr3.1:90851451-90851470 | MS.gene52804:CDS | 50.0% |
| !! | CGGGAATAGCGGGTGAAAAA+TGG | + | chr3.1:90851347-90851366 | None:intergenic | 50.0% |
| !! | TACTGGTTCGTTTGCGTCCT+CGG | - | chr3.1:90851117-90851136 | MS.gene52804:CDS | 50.0% |
| AAACGCGCCACCGATCTATC+CGG | - | chr3.1:90851159-90851178 | MS.gene52804:CDS | 55.0% | |
| AACGAACCAGTAGAGACCGC+CGG | + | chr3.1:90851109-90851128 | None:intergenic | 55.0% | |
| CGGCCATTTCTTCATGGAGG+CGG | + | chr3.1:90851392-90851411 | None:intergenic | 55.0% | |
| CTCCGGTGCAGAAGAGAGAA+AGG | + | chr3.1:90851077-90851096 | None:intergenic | 55.0% | |
| CTCGATGTAGGTTGCGGTGT+TGG | - | chr3.1:90851447-90851466 | MS.gene52804:CDS | 55.0% | |
| GAAAGAGGTGATGCGCTTCC+TGG | - | chr3.1:90851813-90851832 | MS.gene52804:CDS | 55.0% | |
| GCGCCGTCGAAGCTGTTATT+GGG | + | chr3.1:90851630-90851649 | None:intergenic | 55.0% | |
| GCTGAAGCGGCTAAGAAGGT+TGG | - | chr3.1:90851858-90851877 | MS.gene52804:CDS | 55.0% | |
| GGCCATTTCTTCATGGAGGC+GGG | + | chr3.1:90851391-90851410 | None:intergenic | 55.0% | |
| ! | CGTTTGCCTTTTCGTTCGGC+AGG | + | chr3.1:90851144-90851163 | None:intergenic | 55.0% |
| ! | GATGTAGGTTGCGGTGTTGG+TGG | - | chr3.1:90851450-90851469 | MS.gene52804:CDS | 55.0% |
| ! | GGCGCGTTTGCCTTTTCGTT+CGG | + | chr3.1:90851148-90851167 | None:intergenic | 55.0% |
| !! | TCAGCGTAGGTTCTAAGCCC+AGG | + | chr3.1:90851834-90851853 | None:intergenic | 55.0% |
| AAGATTAGGCGCGTGGCACG+TGG | + | chr3.1:90851667-90851686 | None:intergenic | 60.0% | |
| AGCCACCGTCTCATCCATGG+TGG | - | chr3.1:90851913-90851932 | MS.gene52804:CDS | 60.0% | |
| CATGGAGGCGGGTAGCATCA+CGG | + | chr3.1:90851380-90851399 | None:intergenic | 60.0% | |
| CGCGCCGTCGAAGCTGTTAT+TGG | + | chr3.1:90851631-90851650 | None:intergenic | 60.0% | |
| CGGGTCCACCATGGATGAGA+CGG | + | chr3.1:90851921-90851940 | None:intergenic | 60.0% | |
| CTCAGCCACCGTCTCATCCA+TGG | - | chr3.1:90851910-90851929 | MS.gene52804:CDS | 60.0% | |
| GTCCACCATGGATGAGACGG+TGG | + | chr3.1:90851918-90851937 | None:intergenic | 60.0% | |
| TGAACCGCCGGATAGATCGG+TGG | + | chr3.1:90851169-90851188 | None:intergenic | 60.0% | |
| CTCGGCCCTGCCGAACGAAA+AGG | - | chr3.1:90851135-90851154 | MS.gene52804:CDS | 65.0% | |
| ! | CTTTTCGTTCGGCAGGGCCG+AGG | + | chr3.1:90851137-90851156 | None:intergenic | 65.0% |
| ACCAGTAGAGACCGCCGGCG+AGG | + | chr3.1:90851104-90851123 | None:intergenic | 70.0% | |
| AGTAGAGACCGCCGGCGAGG+AGG | + | chr3.1:90851101-90851120 | None:intergenic | 70.0% | |
| CGCGCCACCGATCTATCCGG+CGG | - | chr3.1:90851162-90851181 | MS.gene52804:CDS | 70.0% | |
| GTAGAGACCGCCGGCGAGGA+GGG | + | chr3.1:90851100-90851119 | None:intergenic | 70.0% | |
| TCCTCGCCGGCGGTCTCTAC+TGG | - | chr3.1:90851100-90851119 | MS.gene52804:CDS | 70.0% | |
| TGCACCGGAGCCCTCCTCGC+CGG | - | chr3.1:90851087-90851106 | MS.gene52804:CDS | 75.0% | |
| ! | ACCGCCGGCGAGGAGGGCTC+CGG | + | chr3.1:90851094-90851113 | None:intergenic | 80.0% |
| ! | ACCGGAGCCCTCCTCGCCGG+CGG | - | chr3.1:90851090-90851109 | MS.gene52804:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 90851066 | 90852148 | 90851066 | ID=MS.gene52804 |
| chr3.1 | mRNA | 90851066 | 90852148 | 90851066 | ID=MS.gene52804.t1;Parent=MS.gene52804 |
| chr3.1 | exon | 90851066 | 90852148 | 90851066 | ID=MS.gene52804.t1.exon1;Parent=MS.gene52804.t1 |
| chr3.1 | CDS | 90851066 | 90852148 | 90851066 | ID=cds.MS.gene52804.t1;Parent=MS.gene52804.t1 |
| Gene Sequence |
| Protein sequence |
